HHSEARCH alignment of GI: 254780854 and SCOP domain: d2fug51

Alignment
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=330.13  Aligned_cols=149  Identities=35%  Similarity=0.631  Sum_probs=127.5

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC-
Q ss_conf             999999861531145798479599998689899999998718789801475132568877----778579999966157-
Q gi|254780854|r    8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK-   82 (202)
Q Consensus         8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~-   82 (202)
                      |.+.|++.....+.......|+++|.|+++++.+++++||+   ++|++|+|||||||+.    .++||+|||||+|+. 
T Consensus         3 le~~Le~a~~~g~~ve~~~~g~l~I~V~~e~l~evl~~LKe---~gF~~L~dITaVD~~~~~e~~~~rfevvYhL~S~~~   79 (196)
T d2fug51           3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG   79 (196)
T ss_dssp             HHHHHHHHHTTTCCEEECSSSCEEEECCSTTHHHHHHHTTT---TTCCCCCCEEEEECTTCSSCCSSSEEEEEEEECCTT
T ss_pred             HHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf             89999986733770101348838999859999999999986---799816578848688767676640699987888864


Q ss_pred             ----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC----C
Q ss_conf             ----5205998212057-850101223302553101121011382735679876778899898787113377898----4
Q gi|254780854|r   83 ----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTG----F  153 (202)
Q Consensus        83 ----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG----~  153 (202)
                          .+.+|+|||.+++ ++.||||++|||+|||+|||+||||||.|+|||||||||++++|+||||||||||.|    |
T Consensus        80 ~~~~~~~~v~vkv~vp~~~p~ipSi~~i~p~A~w~ERE~~dmfGi~f~ghpd~rr~llpd~~~g~PlRKdfpl~~~~~~~  159 (196)
T d2fug51          80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF  159 (196)
T ss_dssp             SSSCCCCEEEEEEEECSSCCCCCCCCC-----CCCHHHHHHHHHHSSCCCSSCSCCCCSSCSSSCSSSTTSCCCCCCEEC
T ss_pred             CCCCCCCEEEEEEEECCCCCEEEEEECCEECCEEEECCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             04788638999997235663122342318065101303526608697898888565579999989877676688865555


Q ss_pred             EEEEEC
Q ss_conf             478876
Q gi|254780854|r  154 VELHYD  159 (202)
Q Consensus       154 ~evryd  159 (202)
                      .|+||+
T Consensus       160 ~~~~~~  165 (196)
T d2fug51         160 REGRYI  165 (196)
T ss_dssp             TTSCEE
T ss_pred             CCCCCC
T ss_conf             255307


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]