RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus str. psy62] (202 letters) >3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* (5:1-141) Length = 141 Score = 126 bits (319), Expect = 1e-30 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%) Query: 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66 L + + + N +G L + + + + F + D+ G+D+L Sbjct: 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMG---FNFLADIVGLDYL 58 Query: 67 SRSN----RFDVVYHFLSPKY-----NRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREV 116 + + RF VVY +S R V++ V E +P++ ++ A++ EREV Sbjct: 59 TYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREV 118 Query: 117 WDMYGIFFEGHPDLRRILTDYGF 139 +D++GI FEGHPDLR+ILT Sbjct: 119 YDLFGIVFEGHPDLRKILTPEDL 141 >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} (A:) Length = 292 Score = 28.6 bits (63), Expect = 0.56 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178 G+F E HP+ + D + V+ + DD VK + H Sbjct: 235 GLFLEAHPNPNQAKCDGPSALPLSALEGFVSQXKAI--DDLVKSFPELDTSIGSHHHH 290 >1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:1-193) Length = 193 Score = 28.5 bits (63), Expect = 0.70 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 7/46 (15%) Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64 VN + E +L VD L LR V G + Sbjct: 3 QKVITVNGI-EQNLFVDAEA--LLSDVLRQQLGLTGVK----VGCE 41 >1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300) Length = 300 Score = 27.6 bits (61), Expect = 1.2 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179 I D D+ F +P V G + + ++K+ + +PV Y Sbjct: 244 LIEKHFTIDKNLPGADHSFALNPDELKEXVDGIRKT--EAELKQGITKPVSEKLLGSSY 300 >1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa PAO1} (A:) Length = 134 Score = 27.4 bits (60), Expect = 1.4 Identities = 6/62 (9%), Positives = 11/62 (17%), Gaps = 2/62 (3%) Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177 D Y F P +R + ++ R + Sbjct: 25 DFYRHFLASSPQIRAKFATTDMTAQKHLL-RAGIMNLVMYARGM-SDSKLRALGASHSRA 82 Query: 178 DY 179 Sbjct: 83 AL 84 >2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} (A:) Length = 97 Score = 27.1 bits (60), Expect = 1.7 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%) Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147 + R V + + RR+LTD G H LR D Sbjct: 58 ILEGSLGVIPRRVL----VHEDDLAGARRLLTDAGLA-HELRSD 96 >1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (A:1-88) Length = 88 Score = 26.7 bits (59), Expect = 2.3 Identities = 6/44 (13%), Positives = 10/44 (22%), Gaps = 5/44 (11%) Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62 + +N V+ L LR+ C Sbjct: 11 RISATINGK-PRVFYVEPRM--HLADALREVVGLTGTK--IGCE 49 >1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} (A:1-77) Length = 77 Score = 25.9 bits (57), Expect = 3.6 Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 5/45 (11%) Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63 + VN + L V D L LR V CG Sbjct: 3 TKTLIVNGM-ARRLLVSPND--LLVDVLRSQLQLTSVK--VGCGK 42 >2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} (A:) Length = 256 Score = 25.3 bits (54), Expect = 5.7 Identities = 7/65 (10%), Positives = 15/65 (23%) Query: 11 YIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSN 70 + +SF+ F + V + RD D + + Sbjct: 65 DLKDSFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDNNGP 124 Query: 71 RFDVV 75 + Sbjct: 125 LGPTL 129 >1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (A:) Length = 163 Score = 25.5 bits (55), Expect = 5.9 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 5/44 (11%) Query: 20 VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63 + VN V+ L FLR++ + + C Sbjct: 6 ITVNVNGK-AQEKAVEPRT--LLIHFLREELNLTGAH--IGCET 44 >1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (C:1-77) Length = 77 Score = 25.1 bits (55), Expect = 6.4 Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 5/43 (11%) Query: 20 VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62 +R +N V L +LR+ C Sbjct: 5 LRLTLNGR-AREDLVPDNM--LLLDYLRETVGLTGTK--QGCD 42 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.144 0.457 Gapped Lambda K H 0.267 0.0585 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,784,872 Number of extensions: 86955 Number of successful extensions: 337 Number of sequences better than 10.0: 1 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 25 Length of query: 202 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 118 Effective length of database: 2,116,429 Effective search space: 249738622 Effective search space used: 249738622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 52 (24.1 bits)