RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C
[Candidatus Liberibacter asiaticus str. psy62]
(202 letters)
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_5* 3iam_5* 3ias_5* (5:1-141)
Length = 141
Score = 126 bits (319), Expect = 1e-30
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFL 66
L + + + N +G L + + + + F + D+ G+D+L
Sbjct: 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAMG---FNFLADIVGLDYL 58
Query: 67 SRSN----RFDVVYHFLSPKY-----NRRLRVKIAVAEGK-SVPSIVGIYPGADWFEREV 116
+ + RF VVY +S R V++ V E +P++ ++ A++ EREV
Sbjct: 59 TYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREV 118
Query: 117 WDMYGIFFEGHPDLRRILTDYGF 139
+D++GI FEGHPDLR+ILT
Sbjct: 119 YDLFGIVFEGHPDLRKILTPEDL 141
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural
genomics, transferase; 1.80A {Haemophilus influenzae}
(A:)
Length = 292
Score = 28.6 bits (63), Expect = 0.56
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
G+F E HP+ + D + V+ + DD VK + H
Sbjct: 235 GLFLEAHPNPNQAKCDGPSALPLSALEGFVSQXKAI--DDLVKSFPELDTSIGSHHHH 290
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD;
1.28A {Desulfovibrio gigas} (A:1-193)
Length = 193
Score = 28.5 bits (63), Expect = 0.70
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD 64
VN + E +L VD L LR V G +
Sbjct: 3 QKVITVNGI-EQNLFVDAEA--LLSDVLRQQLGLTGVK----VGCE 41
>1vli_A Spore coat polysaccharide biosynthesis protein SPSE;
2636322, structural genomics, JCSG, protein structure
initiative, BSU37870, PSI; 2.38A {Bacillus subtilis}
(A:1-300)
Length = 300
Score = 27.6 bits (61), Expect = 1.2
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 121 GIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDY 179
I D D+ F +P V G + + ++K+ + +PV Y
Sbjct: 244 LIEKHFTIDKNLPGADHSFALNPDELKEXVDGIRKT--EAELKQGITKPVSEKLLGSSY 300
>1tu9_A Hypothetical protein PA3967; structural genomics, heme,
hemoglobin, PSI, protein structure initiative; HET: HEM;
1.20A {Pseudomonas aeruginosa PAO1} (A:)
Length = 134
Score = 27.4 bits (60), Expect = 1.4
Identities = 6/62 (9%), Positives = 11/62 (17%), Gaps = 2/62 (3%)
Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHR 177
D Y F P +R + ++ R +
Sbjct: 25 DFYRHFLASSPQIRAKFATTDMTAQKHLL-RAGIMNLVMYARGM-SDSKLRALGASHSRA 82
Query: 178 DY 179
Sbjct: 83 AL 84
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Pseudomonas aeruginosa} (A:)
Length = 97
Score = 27.1 bits (60), Expect = 1.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147
+ R V + + RR+LTD G H LR D
Sbjct: 58 ILEGSLGVIPRRVL----VHEDDLAGARRLLTDAGLA-HELRSD 96
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum,
MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (A:1-88)
Length = 88
Score = 26.7 bits (59), Expect = 2.3
Identities = 6/44 (13%), Positives = 10/44 (22%), Gaps = 5/44 (11%)
Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
+ +N V+ L LR+ C
Sbjct: 11 RISATINGK-PRVFYVEPRM--HLADALREVVGLTGTK--IGCE 49
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix
bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio
desulfuricans} (A:1-77)
Length = 77
Score = 25.9 bits (57), Expect = 3.6
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 19 SVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
+ VN + L V D L LR V CG
Sbjct: 3 TKTLIVNGM-ARRLLVSPND--LLVDVLRSQLQLTSVK--VGCGK 42
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein,
cargo receptor, structural genomics, NPPSFA; 1.42A
{Saccharomyces cerevisiae} (A:)
Length = 256
Score = 25.3 bits (54), Expect = 5.7
Identities = 7/65 (10%), Positives = 15/65 (23%)
Query: 11 YIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSN 70
+ +SF+ F + V + RD D + +
Sbjct: 65 DLKDSFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDNNGP 124
Query: 71 RFDVV 75
+
Sbjct: 125 LGPTL 129
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide
dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A
{Hydrogenophaga pseudoflava} (A:)
Length = 163
Score = 25.5 bits (55), Expect = 5.9
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 20 VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV 63
+ VN V+ L FLR++ + + C
Sbjct: 6 ITVNVNGK-AQEKAVEPRT--LLIHFLREELNLTGAH--IGCET 44
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine
oxidase family, dimer heterotrimers, oxidoreductase;
HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica}
(C:1-77)
Length = 77
Score = 25.1 bits (55), Expect = 6.4
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 5/43 (11%)
Query: 20 VRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62
+R +N V L +LR+ C
Sbjct: 5 LRLTLNGR-AREDLVPDNM--LLLDYLRETVGLTGTK--QGCD 42
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.144 0.457
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,784,872
Number of extensions: 86955
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 25
Length of query: 202
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 118
Effective length of database: 2,116,429
Effective search space: 249738622
Effective search space used: 249738622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.1 bits)