RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C
[Candidatus Liberibacter asiaticus str. psy62]
(202 letters)
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
Nqo5 {Thermus thermophilus [TaxId: 274]}
Length = 196
Score = 119 bits (300), Expect = 1e-28
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 25 NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLS 80
N +G L + + + + F + D+ G+D+L+ R RF VVY +S
Sbjct: 20 NGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVS 76
Query: 81 PKY-----NRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRIL 134
R V++ V E +P++ ++ A++ EREV+D++GI FEGHPDLR+IL
Sbjct: 77 LPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKIL 136
Query: 135 TDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRDYDFLSPWEG 187
T EGHPLRKD+P+ L + + ++ +D G
Sbjct: 137 TPEDLEGHPLRKDYPLGETPTLFRE--GRYIIPAEFRAALTGKDPGLTFYKGG 187
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 240
Score = 29.6 bits (66), Expect = 0.22
Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 15/126 (11%)
Query: 70 NRFDVVYHFLSPKYN-----RRLRVKIAVAEGKSVPSIVGIYPGADWFEREVWDMYG--I 122
+R DV+ + ++ RV V EG + + ++ G + G
Sbjct: 61 DRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGL---IVLHSGHFSK--IFKKLMGTTC 115
Query: 123 FFEGHPDLRRILTDYGFEGHPLRKDFPVTGFV---ELHYDDKVKKVVYRPVELMQEHRDY 179
+ + GHP+ + + E++ + + +
Sbjct: 116 NLKWREADEKERLWVVAPGHPIVEGIGPYIELEQEEMYGEFFDIPEPDETIFISWFEGGE 175
Query: 180 DFLSPW 185
F S
Sbjct: 176 VFRSGC 181
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 150
Score = 27.3 bits (60), Expect = 1.0
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 118 DMYGIFFEGHPDLRRILTDYG--FEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQ 174
Y FE HP+L+ + V + E + + + V+ +
Sbjct: 27 CFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKN---IAN 83
Query: 175 EHRDYDF 181
+H
Sbjct: 84 KHASLGV 90
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 146
Score = 26.5 bits (58), Expect = 1.8
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVE-LHYDDKVKKVVYRPVELMQE 175
Y F +P+L+ I ++ + + + + V + + Q+
Sbjct: 28 FYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEK---IAQK 84
Query: 176 HRDY 179
H +
Sbjct: 85 HTSF 88
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 26.1 bits (57), Expect = 2.3
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 59 DLCGVDFLSRSNRFDVVYHFLSPKYNR 85
+ V FL R D F P
Sbjct: 379 SITDVTFLKRHFHMDYGTGFYKPVMAS 405
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta
chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Length = 238
Score = 25.4 bits (55), Expect = 3.5
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 104 GIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVE 155
G YP + +R+++ + FEG L P+ +
Sbjct: 143 GPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIP 194
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.5 bits (55), Expect = 3.8
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 12/91 (13%)
Query: 27 VGELSLDVDCGDLVSLCSF---LRDDPHCCFVNIIDLCGVDFLSRSNRFDVV------YH 77
VG L L + + G F++ ++R
Sbjct: 15 VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 74
Query: 78 FLSPKYNRRLRVKIAVAEGKSVPSIVGIYPG 108
+ R+ V +A K G G
Sbjct: 75 II---DGRKANVNLAYLGAKPRSLQTGFAIG 102
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin)
{Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Length = 110
Score = 25.0 bits (54), Expect = 4.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 118 DMYGIFFEGHPDLRRILTDYGFEGHPLRKD 147
D Y F+ HP+ + G L+ +
Sbjct: 10 DFYQELFKAHPEYQNKFGFKGVALGSLKGN 39
>d1mpxa1 b.18.1.13 (A:405-637) Alpha-amino acid ester hydrolase
{Xanthomonas citri [TaxId: 346]}
Length = 233
Score = 24.8 bits (53), Expect = 5.4
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 97 KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVEL 156
K VP + D+ +R +W + + + D R + F PL + + G ++
Sbjct: 44 KPVPFVPR---PVDFADRAMWTTWLVHDQRFVDGRPDVLT--FVTEPLTEPLQIAGAPDV 98
Query: 157 H 157
H
Sbjct: 99 H 99
>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
stercoraria [TaxId: 61]}
Length = 144
Score = 24.9 bits (54), Expect = 5.5
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 119 MYGIFFEGHPDLRRIL--TDYGFEGHPLRKDFPVTGFVELHYDD 160
Y F HP++R + P V + + ++
Sbjct: 27 FYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQ-NIEN 69
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia
sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 162
Score = 24.5 bits (53), Expect = 6.2
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 119 MYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDDKVKKVVYRPVELMQEHRD 178
M +F +G + RI+T F + ++ + ++ + +++ +
Sbjct: 85 MVHVFKDGVTNWGRIVTLISFGAFVAKH------LKSVNQESFIEPLAETITDVLVRTKR 138
Query: 179 YDFLSP---WEGVNSLFAKED 196
D+L W+G F +D
Sbjct: 139 -DWLVKQRGWDGFVEFFHVQD 158
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 24.5 bits (52), Expect = 6.5
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 160 DKVKKVVYRPVELMQEHRDY 179
+++KK Y P+E +++D
Sbjct: 336 EELKKKAYAPMERFMQYKDL 355
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 79
Score = 23.9 bits (52), Expect = 9.2
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 125 EGHPDLRRILTDYGFE 140
+ HP++ IL + GF+
Sbjct: 18 DKHPEVLEILVELGFK 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.144 0.457
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,899
Number of extensions: 43399
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 16
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)