HHsearch alignment for GI: 254780855 and conserved domain: COG3259

>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=506.85  Aligned_cols=384  Identities=17%  Similarity=0.071  Sum_probs=286.0

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5998406868666775599999839-989999988041157889874098987855443121234488899999999999
Q gi|254780855|r    8 SFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK   86 (396)
Q Consensus         8 ~~~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~   86 (396)
T Consensus         2 ~~~I~I~p~T-RiEGhakv~i~vdd~G~V~~~~~~-it~~RgfEk~~~Gkp~EeaP~i~~RICgiC~~sH~LAs~eA~e~   79 (441)
T COG3259           2 MMRIEIDPVT-RIEGHAKVTIEVDDDGIVEDARFH-ITEVRGFEKFVLGKPIEEAPRIVPRICGICPASHHLASVEAAEA   79 (441)
T ss_pred             CEEEEECCCC-CCCCCEEEEEEECCCCCEEEEEEE-ECCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             5059835544-557722799998688853335788-41451187885389867735776433005753778889999998


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             83885788899999999999999988999874334305641-------------89999999999997899755976476
Q gi|254780855|r   87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT-------------PPLWGFEEREKLMVFYERASGSRMHA  153 (396)
Q Consensus        87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~-------------~~~~~~~~r~~~~~~~~~~gG~~~Hp  153 (396)
T Consensus        80 a~gveip~~~~~LREl~~~g~~i~SHALh~y~La~PDfl~~~d~~~~~i~~~~e~~k~~i~Lr~~gq~Iv~~lGGk~IHp  159 (441)
T COG3259          80 ALGVEIPEEAEKLRELLNIGNIIESHALHLYFLAAPDFLGPPDADPGMIDEYPELAKEAIRLRKIGQTIVEVLGGKAIHP  159 (441)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             52875782899999998777787664778888607622478666725544428999999999999999999866877788


Q ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC--CCCHH
Q ss_conf             3365362000789899999999999999999999999844833344212211230333310235665101367--60102
Q gi|254780855|r  154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG--AAWDL  231 (396)
Q Consensus       154 ~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g--~~~~~  231 (396)
T Consensus       160 ~~~~pGG~~~~lsee~~~~l~~~ake~~~lA~~~~e~~~~l~er~~~~~~~~~g~v~~g~~~~~y~~~~~~~d~~~~fd~  239 (441)
T COG3259         160 VNAVPGGVAKNLSEEAREKLLDRAKEALELADRTVELFKELLERMEEEESYHLGLVKKGDHPEPYDGSIRAYDDREKFDP  239 (441)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCH
T ss_conf             76677744788987899999999999999999999999999997641343200346777645654644885264134898


Q ss_pred             HHCCCCCCCCCCCCCCEEEC----CCCCH---HHHHCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHCCH--HH
Q ss_conf             10175443346775400101----23201---221100011687589999999621035-7867201111230304--48
Q gi|254780855|r  232 RKSQPYECYSELDFDIPIGK----HGDCY---DRYLVRMMEMRESVKIIRQCVNRLLGK-NKVGPVSASDPKIVPP--KR  301 (396)
Q Consensus       232 r~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~  301 (396)
T Consensus       240 ~~y~d~i~E~~~~~s~~K~~y~k~lG~p~y~vg~larl~~~~~~~~p~Ar~~~~e~~~~~g~~~~~~~h~ARaiEi~~~~  319 (441)
T COG3259         240 DEYEDIIPESVYPYSYLKHPYYKDLGYPDYRVGPLARLDGCPVMVGPRARELYEENFEELGGTHSFAYHLARAIEILYAL  319 (441)
T ss_pred             HHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99866333101253231264454558843033531110377644671799999976875177637999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCC----
Q ss_conf             9999756754305755577761589748999988951179999987998088999835875686889999708805----
Q gi|254780855|r  302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL----  377 (396)
Q Consensus       302 ~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i----  377 (396)
T Consensus       320 e~a~~lL~~ld~~~-k~r~~~e~~~geGvg~vEAPRGtlvH~~~vdenG~I~~~niIvaT~~N~~ame~~v~~~a~~~~~  398 (441)
T COG3259         320 ERAIELLDELDITG-KVRADVEPKAGEGVGVVEAPRGTLVHHYRVDENGRIKKANIIVATTFNVPAMEKAVRGVAERYIE  398 (441)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999862323478-75443667777314778647614899999748980777878840314567788999999999973


Q ss_pred             -------CHHHHHHHHCCCCCCCC
Q ss_conf             -------75999897609120553
Q gi|254780855|r  378 -------ADVSAILGSLDIVFGEV  394 (396)
Q Consensus       378 -------~D~~~iirSfDpC~sC~  394 (396)
T Consensus       399 ~~~~~~~~~~E~viRAyDPC~sCa  422 (441)
T COG3259         399 TVPEGLLNLVEMVIRAYDPCLSCA  422 (441)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             022777778887776417268889