HHsearch alignment for GI: 254780855 and conserved domain: COG3259
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=506.85 Aligned_cols=384 Identities=17% Similarity=0.071 Sum_probs=286.0
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5998406868666775599999839-989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 8 SFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 8 ~~~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
T Consensus 2 ~~~I~I~p~T-RiEGhakv~i~vdd~G~V~~~~~~-it~~RgfEk~~~Gkp~EeaP~i~~RICgiC~~sH~LAs~eA~e~ 79 (441)
T COG3259 2 MMRIEIDPVT-RIEGHAKVTIEVDDDGIVEDARFH-ITEVRGFEKFVLGKPIEEAPRIVPRICGICPASHHLASVEAAEA 79 (441)
T ss_pred CEEEEECCCC-CCCCCEEEEEEECCCCCEEEEEEE-ECCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 5059835544-557722799998688853335788-41451187885389867735776433005753778889999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 83885788899999999999999988999874334305641-------------89999999999997899755976476
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT-------------PPLWGFEEREKLMVFYERASGSRMHA 153 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~-------------~~~~~~~~r~~~~~~~~~~gG~~~Hp 153 (396)
T Consensus 80 a~gveip~~~~~LREl~~~g~~i~SHALh~y~La~PDfl~~~d~~~~~i~~~~e~~k~~i~Lr~~gq~Iv~~lGGk~IHp 159 (441)
T COG3259 80 ALGVEIPEEAEKLRELLNIGNIIESHALHLYFLAAPDFLGPPDADPGMIDEYPELAKEAIRLRKIGQTIVEVLGGKAIHP 159 (441)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52875782899999998777787664778888607622478666725544428999999999999999999866877788
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC--CCCHH
Q ss_conf 3365362000789899999999999999999999999844833344212211230333310235665101367--60102
Q gi|254780855|r 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG--AAWDL 231 (396)
Q Consensus 154 ~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g--~~~~~ 231 (396)
T Consensus 160 ~~~~pGG~~~~lsee~~~~l~~~ake~~~lA~~~~e~~~~l~er~~~~~~~~~g~v~~g~~~~~y~~~~~~~d~~~~fd~ 239 (441)
T COG3259 160 VNAVPGGVAKNLSEEAREKLLDRAKEALELADRTVELFKELLERMEEEESYHLGLVKKGDHPEPYDGSIRAYDDREKFDP 239 (441)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCH
T ss_conf 76677744788987899999999999999999999999999997641343200346777645654644885264134898
Q ss_pred HHCCCCCCCCCCCCCCEEEC----CCCCH---HHHHCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHCCH--HH
Q ss_conf 10175443346775400101----23201---221100011687589999999621035-7867201111230304--48
Q gi|254780855|r 232 RKSQPYECYSELDFDIPIGK----HGDCY---DRYLVRMMEMRESVKIIRQCVNRLLGK-NKVGPVSASDPKIVPP--KR 301 (396)
Q Consensus 232 r~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~ 301 (396)
T Consensus 240 ~~y~d~i~E~~~~~s~~K~~y~k~lG~p~y~vg~larl~~~~~~~~p~Ar~~~~e~~~~~g~~~~~~~h~ARaiEi~~~~ 319 (441)
T COG3259 240 DEYEDIIPESVYPYSYLKHPYYKDLGYPDYRVGPLARLDGCPVMVGPRARELYEENFEELGGTHSFAYHLARAIEILYAL 319 (441)
T ss_pred HHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99866333101253231264454558843033531110377644671799999976875177637999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCC----
Q ss_conf 9999756754305755577761589748999988951179999987998088999835875686889999708805----
Q gi|254780855|r 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL---- 377 (396)
Q Consensus 302 ~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i---- 377 (396)
T Consensus 320 e~a~~lL~~ld~~~-k~r~~~e~~~geGvg~vEAPRGtlvH~~~vdenG~I~~~niIvaT~~N~~ame~~v~~~a~~~~~ 398 (441)
T COG3259 320 ERAIELLDELDITG-KVRADVEPKAGEGVGVVEAPRGTLVHHYRVDENGRIKKANIIVATTFNVPAMEKAVRGVAERYIE 398 (441)
T ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999862323478-75443667777314778647614899999748980777878840314567788999999999973
Q ss_pred -------CHHHHHHHHCCCCCCCC
Q ss_conf -------75999897609120553
Q gi|254780855|r 378 -------ADVSAILGSLDIVFGEV 394 (396)
Q Consensus 378 -------~D~~~iirSfDpC~sC~ 394 (396)
T Consensus 399 ~~~~~~~~~~E~viRAyDPC~sCa 422 (441)
T COG3259 399 TVPEGLLNLVEMVIRAYDPCLSCA 422 (441)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 022777778887776417268889