HHsearch alignment for GI: 254780855 and conserved domain: PRK10467

>PRK10467 hydrogenase 2 large subunit; Provisional.
Probab=100.00  E-value=0  Score=590.89  Aligned_cols=382  Identities=15%  Similarity=0.142  Sum_probs=255.1

Q ss_pred             EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r   10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG   89 (396)
Q Consensus        10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g   89 (396)
T Consensus         4 rI~IdPvT-RIEGhl~i~v~ve~G~V~dA~~~-~~~fRGFE~~l~GR~p~dap~it~RICGIC~~sH~~As~~Ale~a~G   81 (567)
T PRK10467          4 RITIDPVT-RIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALN   81 (567)
T ss_pred             EEEECCCC-CCCCCEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             38968866-32265489999989999999990-57654188986799877988875831441847799999999999709


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------------------------
Q ss_conf             8578889999999999999998899987433430564-------------------------------------------
Q gi|254780855|r   90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-------------------------------------------  126 (396)
Q Consensus        90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-------------------------------------------  126 (396)
T Consensus        82 v~vp~~a~~lR~L~~~~~~iqsH~lHfy~L~~PDf~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  161 (567)
T PRK10467         82 IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPEKASEMLKGVSTWHLNSAEEFTKVQNKIKDLVAS  161 (567)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             97887799999999999998888999998606421365102113867787775202434443167799999999987502


Q ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHH--------
Q ss_conf             ---------------------------189999999999997899755976476336536200078989999--------
Q gi|254780855|r  127 ---------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE--------  171 (396)
Q Consensus       127 ---------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~--------  171 (396)
T Consensus       162 g~~gi~~~g~~~h~~~~~p~~~~~~~~~~y~~al~~~r~~~~i~ai~gGk~pHp~~~vpGGvt~~~~~d~~~~l~~~rl~  241 (567)
T PRK10467        162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM  241 (567)
T ss_pred             CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             30000057767881211780234677888999999999999999998264557442204746677871124343089999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHCCEEEECC------------CCCCCCCCCCCCCCCCCCC----------
Q ss_conf             999999999999999999984-48333442122112303------------3331023566510136760----------
Q gi|254780855|r  172 DIGCWCDSFPSALNDISDLLT-GNRIFKQRNVNIGTVKL------------EDAWGWGFSGVMIRGSGAA----------  228 (396)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~------------~~~~~~~~~G~~~~~~g~~----------  228 (396)
T Consensus       242 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~g~~~~ls~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  321 (567)
T PRK10467        242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSTYRPITSHSDE  321 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCH
T ss_conf             99999999999999987656999987555777517564562331453457877503236753524753332335443320


Q ss_pred             CH---HHHC------------CCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-------
Q ss_conf             10---2101------------7544334677540010123201221100011687589999999621035786-------
Q gi|254780855|r  229 WD---LRKS------------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV-------  286 (396)
Q Consensus       229 ~~---~r~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------  286 (396)
T Consensus       322 ~~~~~i~e~~~~s~y~~~~~~~P~~~~t~P~~~~~~~~~~YSw~Kapry~g~~~EvGPLARl~v~~~~~~~~~~~~~~~~  401 (567)
T PRK10467        322 YLIKGIQESAKHAWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI  401 (567)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             13323400366443047877798654035675555666776423246538962022777887643203785578999998


Q ss_pred             ---------C-----CCCCCCHHHCCHHH------HHHHHHHHHH----HCCCCC-CCCCCCCCCC--CEEEEEECCCCE
Q ss_conf             ---------7-----20111123030448------9999756754----305755-5777615897--489999889511
Q gi|254780855|r  287 ---------G-----PVSASDPKIVPPKR------ADMKRSMESL----IHHFKL-YTEGYHVPVG--EVYAAVEAPKGE  339 (396)
Q Consensus       287 ---------~-----~~~~~~~~~~~~~~------~~~~~~~e~l----~~~~~~-~~~~~~~~~G--~GvG~vEAPRG~  339 (396)
T Consensus       402 ~~~~~~l~~~~~~~~~~~s~~~R~iaR~~e~~~~~~~l~~~~~~l~~~i~~~d~~~~~~~~~p~~~~~~GvG~~EAPRG~  481 (567)
T PRK10467        402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM  481 (567)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             88887640366543445458999999999999999999999999987531577531357889888874379998778767


Q ss_pred             EEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             799999879980889998358756868---------8999970880575------999897609120553
Q gi|254780855|r  340 FGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       340 L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
T Consensus       482 L~H~~~i-e~G~I~~yqiIvPTtwN~sprd~~~~~g~~e~alig~~i~d~~~p~ev~~~iRSfDPClsCa  550 (567)
T PRK10467        482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA  550 (567)
T ss_pred             EEEEEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf             0547996-39929898798978766342254678569999854999899754687655541688534216