HHsearch alignment for GI: 254780855 and conserved domain: PRK10467
>PRK10467 hydrogenase 2 large subunit; Provisional.
Probab=100.00 E-value=0 Score=590.89 Aligned_cols=382 Identities=15% Similarity=0.142 Sum_probs=255.1
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396)
T Consensus 4 rI~IdPvT-RIEGhl~i~v~ve~G~V~dA~~~-~~~fRGFE~~l~GR~p~dap~it~RICGIC~~sH~~As~~Ale~a~G 81 (567)
T PRK10467 4 RITIDPVT-RIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALN 81 (567)
T ss_pred EEEECCCC-CCCCCEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 38968866-32265489999989999999990-57654188986799877988875831441847799999999999709
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------------------------
Q ss_conf 8578889999999999999998899987433430564-------------------------------------------
Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------------------------------------- 126 (396)
Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~------------------------------------------- 126 (396)
T Consensus 82 v~vp~~a~~lR~L~~~~~~iqsH~lHfy~L~~PDf~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 161 (567)
T PRK10467 82 IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPEKASEMLKGVSTWHLNSAEEFTKVQNKIKDLVAS 161 (567)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97887799999999999998888999998606421365102113867787775202434443167799999999987502
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHH--------
Q ss_conf ---------------------------189999999999997899755976476336536200078989999--------
Q gi|254780855|r 127 ---------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE-------- 171 (396)
Q Consensus 127 ---------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~-------- 171 (396)
T Consensus 162 g~~gi~~~g~~~h~~~~~p~~~~~~~~~~y~~al~~~r~~~~i~ai~gGk~pHp~~~vpGGvt~~~~~d~~~~l~~~rl~ 241 (567)
T PRK10467 162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 (567)
T ss_pred CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30000057767881211780234677888999999999999999998264557442204746677871124343089999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHCCEEEECC------------CCCCCCCCCCCCCCCCCCC----------
Q ss_conf 999999999999999999984-48333442122112303------------3331023566510136760----------
Q gi|254780855|r 172 DIGCWCDSFPSALNDISDLLT-GNRIFKQRNVNIGTVKL------------EDAWGWGFSGVMIRGSGAA---------- 228 (396)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~------------~~~~~~~~~G~~~~~~g~~---------- 228 (396)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~g~~~~ls~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (567)
T PRK10467 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSTYRPITSHSDE 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCH
T ss_conf 99999999999999987656999987555777517564562331453457877503236753524753332335443320
Q ss_pred CH---HHHC------------CCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-------
Q ss_conf 10---2101------------7544334677540010123201221100011687589999999621035786-------
Q gi|254780855|r 229 WD---LRKS------------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------- 286 (396)
Q Consensus 229 ~~---~r~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------- 286 (396)
T Consensus 322 ~~~~~i~e~~~~s~y~~~~~~~P~~~~t~P~~~~~~~~~~YSw~Kapry~g~~~EvGPLARl~v~~~~~~~~~~~~~~~~ 401 (567)
T PRK10467 322 YLIKGIQESAKHAWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 (567)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 13323400366443047877798654035675555666776423246538962022777887643203785578999998
Q ss_pred ---------C-----CCCCCCHHHCCHHH------HHHHHHHHHH----HCCCCC-CCCCCCCCCC--CEEEEEECCCCE
Q ss_conf ---------7-----20111123030448------9999756754----305755-5777615897--489999889511
Q gi|254780855|r 287 ---------G-----PVSASDPKIVPPKR------ADMKRSMESL----IHHFKL-YTEGYHVPVG--EVYAAVEAPKGE 339 (396)
Q Consensus 287 ---------~-----~~~~~~~~~~~~~~------~~~~~~~e~l----~~~~~~-~~~~~~~~~G--~GvG~vEAPRG~ 339 (396)
T Consensus 402 ~~~~~~l~~~~~~~~~~~s~~~R~iaR~~e~~~~~~~l~~~~~~l~~~i~~~d~~~~~~~~~p~~~~~~GvG~~EAPRG~ 481 (567)
T PRK10467 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 (567)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 88887640366543445458999999999999999999999999987531577531357889888874379998778767
Q ss_pred EEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 799999879980889998358756868---------8999970880575------999897609120553
Q gi|254780855|r 340 FGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 340 L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
T Consensus 482 L~H~~~i-e~G~I~~yqiIvPTtwN~sprd~~~~~g~~e~alig~~i~d~~~p~ev~~~iRSfDPClsCa 550 (567)
T PRK10467 482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 (567)
T ss_pred EEEEEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 0547996-39929898798978766342254678569999854999899754687655541688534216