HHsearch alignment for GI: 254780855 and conserved domain: PRK13292
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional.
Probab=100.00 E-value=0 Score=559.37 Aligned_cols=389 Identities=44% Similarity=0.792 Sum_probs=372.1
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45615998406868666775599999839989999988041157889874098987855443121234488899999999
Q gi|254780855|r 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83 (396)
Q Consensus 4 ~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~A 83 (396)
T Consensus 396 ~~~~~~vlNiGPqHPstHGvlr~~l~ldGE~Iv~~dp~iGYlHRG~EKlaE~~ty~Q~ip~tDRidyi~~~~n~~aY~~A 475 (784)
T PRK13292 396 VDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNS 475 (784)
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78874998679998766775579999718689885456562110668874348710352424602120041788999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 99983885788899999999999999988999874334305641899999999999978997559764763365362000
Q gi|254780855|r 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163 (396)
Q Consensus 84 iE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~ 163 (396)
T Consensus 476 VEkL~GIEVPeRAqyIRvIl~EL~RI~SHLl~lG~~a~DlG~~T~f~~~fr~RE~imdl~E~lTGaR~~~~~~rIGGVr~ 555 (784)
T PRK13292 476 VETLCGITVPDRAIYIRVMLAELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAE 555 (784)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCCC
T ss_conf 99993898777999899999999999999999999999877678999999999999999999742052506642188537
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 78989999999999999999999999984483334421221123033331023566510136760102101754433467
Q gi|254780855|r 164 DIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~ 243 (396)
T Consensus 556 DLp~~~~~~i~~~l~~~~~~l~e~~~ll~~N~i~~~Rt~GVGvls~e~A~~~G~tGP~lRASGv~~DlRk~~PY~~Yd~l 635 (784)
T PRK13292 556 DLPEGWDEAVKAFLRWFPGRLKEYEDLLKGNPIFKARLKGVGAITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYERF 635 (784)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf 89979999999999999999999999971795577643765887799999857866411356750254403774310258
Q ss_pred CCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 75400101232012211000116875899999996210357867201111230304489999756754305755577761
Q gi|254780855|r 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~ 323 (396)
T Consensus 636 dFeVpv~~~GD~yaR~lVRieEm~qSi~IIrQ~L~~mP~Gp----~~~~~~~~~lP~k~~~~~~iE~lI~hF~~v~~g~~ 711 (784)
T PRK13292 636 HFEVPTAEGGDCYARYLVRVEEMRQSLHIVRQAAAGMPGGR----WITDDYRYVLPKKRDTLHDIESLIHHFVNVTRGMA 711 (784)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 86542488888799889999999999999999997489998----44676543688455554227887665000356766
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 5897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 324 ~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
T Consensus 712 ~P~GE~y~~vEapRGE~g~yvvSdGs~~PYR~kIRtPSF~Nlqal~~~~~G~~iAD~vaIigSiD~V~gevDR 784 (784)
T PRK13292 712 PPKGECYSAIEAPKGENGYFVVSDGLNVAYRVRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 784 (784)
T ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9997779988468843899999789995378998488736999999997799188999997574877677899