HHsearch alignment for GI: 254780855 and conserved domain: TIGR03295
>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=100.00 E-value=0 Score=597.98 Aligned_cols=373 Identities=17% Similarity=0.127 Sum_probs=282.2
Q ss_pred EEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98406868666775599999839-98999998804115788987409898785544312123448889999999999983
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396)
T Consensus 4 ~i~IdPit-RiEGh~~i~v~v~~~g~v~~a~~~~~~~~RGfE~il~GR~~~da~~it~RICGIC~~sH~~As~~AvE~a~ 82 (411)
T TIGR03295 4 RIEISPTT-RHEGHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLASVEAIEDSI 82 (411)
T ss_pred EEEECCCC-EEECCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH
T ss_conf 49958857-24445579999966982998645336766369999769998898897583428683788999999999982
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 88578889999999999999998899987433430564--------1899999999999978997559764763365362
Q gi|254780855|r 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG 160 (396)
Q Consensus 89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGG 160 (396)
T Consensus 83 gi~vP~~a~~lR~L~~~~e~iqsH~lh~~-L~~pDf~~~~~~~~~~~~~~~~~~~r~~g~~i~~iigGr~~H~~~~v~GG 161 (411)
T TIGR03295 83 DCEVPKDGLLLRELTGCANRLHSHALHHF-LIAPDFIPETDTKLVREVIKRIQRMRKIGQTVVDIVGGEGIHPPNIRIGG 161 (411)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99889789999999999999999999999-85711047532699999999999999999999998668988998822387
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCC--CCCCCCCCCCCCCHH---HHCC
Q ss_conf 00078989999999999999999999999984483334421221123033331023--566510136760102---1017
Q gi|254780855|r 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG--FSGVMIRGSGAAWDL---RKSQ 235 (396)
Q Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~G~~~~~~g~~~~~---r~~~ 235 (396)
T Consensus 162 v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~d~~~i~e~~ 238 (411)
T TIGR03295 162 MYYNITEQAKSRLYYLLKQYEPLAIEHVEFMIAL--IENGKTEVGIPEKLGWHDQPYIATHPT-YGDRPKIDPDRVTEVS 238 (411)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHCEECC
T ss_conf 8578999999999999999999999999999999--996544278676554333665455676-6875554889965448
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHC
Q ss_conf 544334677540010123201221100011687589999999621035786720111123030--448999975675430
Q gi|254780855|r 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIH 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~ 313 (396)
T Consensus 239 ~~s~y~~~~~~------~~~~~~~p~y~g~~~evGplAR~~~~~--~~~~~~~~~~~~AR~~E~~~~~~~~~e~l~~l~~ 310 (411)
T TIGR03295 239 PYNWYDDAEYA------MQACTTIPLYDGRPVEVGPRARMVKFK--NFKEKGAMAIHIARAMENPDALYRAIEILDELDC 310 (411)
T ss_pred CHHHHCCCCCC------CEEEEECCCCCCCCCCCCHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 82761685545------043100333189301215889999866--9775862888999999999999999999972655
Q ss_pred CCCCCCCCCCCCCCC-EEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf 575557776158974-8999988951179999987998088999835875686889999708805759998976091205
Q gi|254780855|r 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392 (396)
Q Consensus 314 ~~~~~~~~~~~~~G~-GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~s 392 (396)
T Consensus 311 ~~~~~~~~~~~~~~~~GvG~vEAPRG~L~H~~~i~-dG~I~~y~ii~PTt~N~~~~e~~l~g~~~~~~e~iiRSfDPCis 389 (411)
T TIGR03295 311 NGKVRADEIEQGDGKLGWGAHEAPRGCDVHMARVK-DGKIQEYTALVPTTWNFPTCGKATEGAPWQYAEVIMRAYDPCVS 389 (411)
T ss_pred CCCEECCCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHEECCCCHH
T ss_conf 79702577776889878999977871307899980-99995899988462127778866266753254053231785420
Q ss_pred CCCC
Q ss_conf 5359
Q gi|254780855|r 393 EVDR 396 (396)
Q Consensus 393 C~dr 396 (396)
T Consensus 390 Ca~H 393 (411)
T TIGR03295 390 CATH 393 (411)
T ss_pred HHHC
T ss_conf 1736