HHsearch alignment for GI: 254780855 and conserved domain: TIGR03295

>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=100.00  E-value=0  Score=597.98  Aligned_cols=373  Identities=17%  Similarity=0.127  Sum_probs=282.2

Q ss_pred             EEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98406868666775599999839-98999998804115788987409898785544312123448889999999999983
Q gi|254780855|r   10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL   88 (396)
Q Consensus        10 ~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~   88 (396)
T Consensus         4 ~i~IdPit-RiEGh~~i~v~v~~~g~v~~a~~~~~~~~RGfE~il~GR~~~da~~it~RICGIC~~sH~~As~~AvE~a~   82 (411)
T TIGR03295         4 RIEISPTT-RHEGHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLASVEAIEDSI   82 (411)
T ss_pred             EEEECCCC-EEECCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH
T ss_conf             49958857-24445579999966982998645336766369999769998898897583428683788999999999982


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             88578889999999999999998899987433430564--------1899999999999978997559764763365362
Q gi|254780855|r   89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG  160 (396)
Q Consensus        89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGG  160 (396)
T Consensus        83 gi~vP~~a~~lR~L~~~~e~iqsH~lh~~-L~~pDf~~~~~~~~~~~~~~~~~~~r~~g~~i~~iigGr~~H~~~~v~GG  161 (411)
T TIGR03295        83 DCEVPKDGLLLRELTGCANRLHSHALHHF-LIAPDFIPETDTKLVREVIKRIQRMRKIGQTVVDIVGGEGIHPPNIRIGG  161 (411)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99889789999999999999999999999-85711047532699999999999999999999998668988998822387


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCC--CCCCCCCCCCCCCHH---HHCC
Q ss_conf             00078989999999999999999999999984483334421221123033331023--566510136760102---1017
Q gi|254780855|r  161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG--FSGVMIRGSGAAWDL---RKSQ  235 (396)
Q Consensus       161 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~G~~~~~~g~~~~~---r~~~  235 (396)
T Consensus       162 v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~d~~~i~e~~  238 (411)
T TIGR03295       162 MYYNITEQAKSRLYYLLKQYEPLAIEHVEFMIAL--IENGKTEVGIPEKLGWHDQPYIATHPT-YGDRPKIDPDRVTEVS  238 (411)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHCEECC
T ss_conf             8578999999999999999999999999999999--996544278676554333665455676-6875554889965448


Q ss_pred             CCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHC
Q ss_conf             544334677540010123201221100011687589999999621035786720111123030--448999975675430
Q gi|254780855|r  236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIH  313 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~  313 (396)
T Consensus       239 ~~s~y~~~~~~------~~~~~~~p~y~g~~~evGplAR~~~~~--~~~~~~~~~~~~AR~~E~~~~~~~~~e~l~~l~~  310 (411)
T TIGR03295       239 PYNWYDDAEYA------MQACTTIPLYDGRPVEVGPRARMVKFK--NFKEKGAMAIHIARAMENPDALYRAIEILDELDC  310 (411)
T ss_pred             CHHHHCCCCCC------CEEEEECCCCCCCCCCCCHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             82761685545------043100333189301215889999866--9775862888999999999999999999972655


Q ss_pred             CCCCCCCCCCCCCCC-EEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf             575557776158974-8999988951179999987998088999835875686889999708805759998976091205
Q gi|254780855|r  314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG  392 (396)
Q Consensus       314 ~~~~~~~~~~~~~G~-GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~s  392 (396)
T Consensus       311 ~~~~~~~~~~~~~~~~GvG~vEAPRG~L~H~~~i~-dG~I~~y~ii~PTt~N~~~~e~~l~g~~~~~~e~iiRSfDPCis  389 (411)
T TIGR03295       311 NGKVRADEIEQGDGKLGWGAHEAPRGCDVHMARVK-DGKIQEYTALVPTTWNFPTCGKATEGAPWQYAEVIMRAYDPCVS  389 (411)
T ss_pred             CCCEECCCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHEECCCCHH
T ss_conf             79702577776889878999977871307899980-99995899988462127778866266753254053231785420


Q ss_pred             CCCC
Q ss_conf             5359
Q gi|254780855|r  393 EVDR  396 (396)
Q Consensus       393 C~dr  396 (396)
T Consensus       390 Ca~H  393 (411)
T TIGR03295       390 CATH  393 (411)
T ss_pred             HHHC
T ss_conf             1736