Query gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs 127 out of 1943
Neff 9.2
Searched_HMMs 39220
Date Mon May 30 02:17:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780855.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03295 frhA coenzyme F420 h 100.0 0 0 598.0 31.9 373 10-396 4-393 (411)
2 PRK10170 hydrogenase 1 large s 100.0 0 0 598.9 28.0 383 6-394 16-580 (597)
3 PRK10467 hydrogenase 2 large s 100.0 0 0 590.9 32.0 382 10-394 4-550 (567)
4 PRK06075 NADH dehydrogenase su 100.0 0 0 585.7 35.8 391 3-396 2-392 (392)
5 PRK11742 bifunctional NADH:ubi 100.0 0 0 574.2 34.5 388 5-396 188-575 (575)
6 PRK07415 NAD(P)H-quinone oxido 100.0 0 0 566.2 35.4 389 3-396 5-394 (394)
7 PRK12322 NADH dehydrogenase su 100.0 0 0 560.5 34.3 365 4-396 2-366 (366)
8 PRK13292 trifunctional NADH de 100.0 0 0 559.4 34.8 389 4-396 396-784 (784)
9 CHL00017 ndhH NADH dehydrogena 100.0 0 0 557.1 36.1 389 3-396 5-393 (393)
10 COG3261 HycE Ni,Fe-hydrogenase 100.0 0 0 545.8 35.1 365 2-396 2-367 (382)
11 TIGR01962 NuoD NADH dehydrogen 100.0 0 0 553.0 28.3 387 7-396 1-408 (408)
12 COG0374 HyaB Ni,Fe-hydrogenase 100.0 0 0 550.3 24.4 382 10-394 3-528 (545)
13 pfam00374 NiFeSe_Hases Nickel- 100.0 0 0 539.0 26.2 347 47-394 1-502 (504)
14 COG0649 NuoD NADH:ubiquinone o 100.0 0 0 521.0 31.5 391 2-396 8-398 (398)
15 COG3259 FrhA Coenzyme F420-red 100.0 0 0 506.9 29.0 384 8-394 2-422 (441)
16 KOG2870 consensus 100.0 0 0 403.3 26.3 386 7-396 67-452 (452)
17 pfam00346 Complex1_49kDa Respi 100.0 4.9E-44 0 326.0 22.1 272 122-396 1-272 (272)
18 KOG3078 consensus 83.2 1.5 3.7E-05 23.0 3.5 119 47-168 14-157 (235)
19 PRK12449 acyl carrier protein; 78.5 2.3 5.9E-05 21.7 3.1 37 77-113 42-79 (80)
20 pfam10437 Lip_prot_lig_C Bacte 76.4 5.4 0.00014 19.1 4.6 38 22-59 16-57 (85)
21 pfam03450 CO_deh_flav_C CO deh 75.6 5.6 0.00014 18.9 5.3 34 27-60 21-61 (103)
22 TIGR03419 NifU_clost FeS clust 75.5 5.7 0.00014 18.9 6.1 40 23-66 35-84 (121)
23 CHL00124 acpP acyl carrier pro 74.9 3.7 9.4E-05 20.2 3.4 38 77-114 42-80 (84)
24 TIGR01264 tyr_amTase_E tyrosin 66.3 8.9 0.00023 17.5 4.8 17 360-376 292-308 (415)
25 TIGR02639 ClpA ATP-dependent C 65.6 2 5.1E-05 22.1 0.4 16 145-160 571-586 (774)
26 KOG1748 consensus 65.0 4.6 0.00012 19.6 2.1 33 81-113 94-127 (131)
27 PRK10819 transport protein Ton 58.6 12 0.00031 16.6 3.9 28 338-365 178-205 (243)
28 pfam05910 DUF868 Plant protein 56.2 7.6 0.00019 18.0 2.0 21 341-365 174-194 (272)
29 PRK00982 acpP acyl carrier pro 52.9 13 0.00034 16.3 2.8 44 69-113 33-77 (78)
30 TIGR01994 SUF_scaf_2 SUF syste 52.9 15 0.00038 16.0 5.2 52 24-103 40-92 (139)
31 PRK08172 acyl carrier protein; 48.6 17 0.00044 15.6 3.8 35 79-113 36-71 (75)
32 TIGR00700 GABAtrnsam 4-aminobu 47.8 3.8 9.7E-05 20.1 -0.7 36 56-91 73-114 (427)
33 pfam02746 MR_MLE_N Mandelate r 44.2 20 0.00051 15.1 5.9 78 7-88 14-100 (117)
34 PRK03822 lplA lipoate-protein 43.4 21 0.00053 15.0 4.6 42 336-378 261-304 (338)
35 pfam01592 NifU_N NifU-like N t 40.9 22 0.00057 14.8 6.3 46 14-66 30-87 (126)
36 pfam00948 Flavi_NS1 Flavivirus 40.4 12 0.0003 16.7 0.9 31 66-96 51-82 (355)
37 pfam02593 DUF166 Uncharacteriz 39.7 23 0.0006 14.6 6.2 58 338-396 128-189 (215)
38 KOG0821 consensus 37.8 15 0.00038 16.0 1.1 61 113-173 16-76 (326)
39 COG0361 InfA Translation initi 37.5 16 0.00041 15.8 1.2 36 19-55 15-50 (75)
40 cd03329 MR_like_4 Mandelate ra 35.3 27 0.00069 14.2 5.4 64 6-69 7-85 (368)
41 pfam03544 TonB Gram-negative b 35.2 27 0.0007 14.2 3.8 25 338-362 16-40 (79)
42 PRK06508 acyl carrier protein; 34.9 23 0.00058 14.7 1.6 17 79-95 42-58 (93)
43 TIGR01352 tonB_Cterm TonB fami 34.6 28 0.00071 14.1 4.2 27 338-364 14-40 (81)
44 PRK11325 scaffold protein; Pro 34.3 28 0.00072 14.1 5.0 39 23-65 40-89 (127)
45 pfam06415 iPGM_N BPG-independe 34.0 29 0.00073 14.0 4.1 69 108-176 40-123 (223)
46 TIGR02274 dCTP_deam deoxycytid 31.9 28 0.00071 14.1 1.7 24 10-33 126-151 (198)
47 pfam01599 Ribosomal_S27 Riboso 31.7 31 0.00079 13.8 2.5 21 341-361 3-23 (47)
48 pfam04268 SoxG Sarcosine oxida 31.3 22 0.00057 14.8 1.1 11 354-364 125-135 (148)
49 cd06664 IscU_like Iron-sulfur 30.4 32 0.00083 13.6 5.4 20 23-42 36-55 (123)
50 COG0810 TonB Periplasmic prote 30.0 33 0.00084 13.6 4.2 29 337-365 179-207 (244)
51 TIGR03199 pucC xanthine dehydr 28.7 35 0.00088 13.4 5.5 48 342-389 186-243 (264)
52 PRK06342 transcription elongat 28.5 35 0.00089 13.4 4.5 40 341-380 98-146 (160)
53 TIGR02963 xanthine_xdhA xanthi 28.1 36 0.00091 13.4 4.2 45 342-386 430-480 (515)
54 PRK05434 phosphoglyceromutase; 25.9 39 0.00098 13.1 4.5 69 108-176 122-205 (511)
55 KOG2276 consensus 25.6 39 0.001 13.1 2.4 18 329-346 429-446 (473)
56 COG4977 Transcriptional regula 25.5 19 0.00048 15.3 -0.1 25 61-85 104-128 (328)
57 PRK05350 acyl carrier protein; 25.0 40 0.001 13.0 3.1 34 79-112 45-79 (82)
58 cd03316 MR_like Mandelate race 23.5 43 0.0011 12.8 6.0 23 48-70 59-81 (357)
59 PRK13468 F0F1 ATP synthase sub 23.5 43 0.0011 12.8 5.1 48 72-120 24-71 (82)
60 COG0822 IscU NifU homolog invo 22.8 44 0.0011 12.7 6.1 21 22-42 41-61 (150)
61 COG0179 MhpD 2-keto-4-pentenoa 22.6 43 0.0011 12.8 1.3 11 343-353 249-259 (266)
62 PRK09971 xanthine dehydrogenas 22.2 45 0.0012 12.6 4.5 55 334-389 186-257 (292)
63 COG1924 Activator of 2-hydroxy 22.1 46 0.0012 12.6 1.5 11 364-374 378-388 (396)
64 KOG3233 consensus 21.3 17 0.00044 15.6 -1.0 14 138-151 88-101 (297)
No 1
>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=100.00 E-value=0 Score=597.98 Aligned_cols=373 Identities=17% Similarity=0.127 Sum_probs=282.2
Q ss_pred EEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98406868666775599999839-98999998804115788987409898785544312123448889999999999983
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396)
+|.+.|++ ++|||++++++||| ++|.++++..+++|||||+||+||||+|+++||||||||||++|++||++|+|+|+
T Consensus 4 ~i~IdPit-RiEGh~~i~v~v~~~g~v~~a~~~~~~~~RGfE~il~GR~~~da~~it~RICGIC~~sH~~As~~AvE~a~ 82 (411)
T TIGR03295 4 RIEISPTT-RHEGHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLASVEAIEDSI 82 (411)
T ss_pred EEEECCCC-EEECCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH
T ss_conf 49958857-24445579999966982998645336766369999769998898897583428683788999999999982
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 88578889999999999999998899987433430564--------1899999999999978997559764763365362
Q gi|254780855|r 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGG 160 (396)
Q Consensus 89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGG 160 (396)
|++||++|+++|||++++|+||||++|+| |+.+++.+ ....+..++|+.++++++++|||+|||++++|||
T Consensus 83 gi~vP~~a~~lR~L~~~~e~iqsH~lh~~-L~~pDf~~~~~~~~~~~~~~~~~~~r~~g~~i~~iigGr~~H~~~~v~GG 161 (411)
T TIGR03295 83 DCEVPKDGLLLRELTGCANRLHSHALHHF-LIAPDFIPETDTKLVREVIKRIQRMRKIGQTVVDIVGGEGIHPPNIRIGG 161 (411)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99889789999999999999999999999-85711047532699999999999999999999998668988998822387
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCC--CCCCCCCCCCCCCHH---HHCC
Q ss_conf 00078989999999999999999999999984483334421221123033331023--566510136760102---1017
Q gi|254780855|r 161 VHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG--FSGVMIRGSGAAWDL---RKSQ 235 (396)
Q Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~G~~~~~~g~~~~~---r~~~ 235 (396)
+++.+++..+.++...++..+.++....+.+... +.......+.........++ ..++. .+....+|. .+..
T Consensus 162 v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~d~~~i~e~~ 238 (411)
T TIGR03295 162 MYYNITEQAKSRLYYLLKQYEPLAIEHVEFMIAL--IENGKTEVGIPEKLGWHDQPYIATHPT-YGDRPKIDPDRVTEVS 238 (411)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHCEECC
T ss_conf 8578999999999999999999999999999999--996544278676554333665455676-6875554889965448
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHC
Q ss_conf 544334677540010123201221100011687589999999621035786720111123030--448999975675430
Q gi|254780855|r 236 PYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVP--PKRADMKRSMESLIH 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~ 313 (396)
+|++|...+.. ..++...+.+.....+.++++|..... .....+....+.++++. .+.+.++++++.+..
T Consensus 239 ~~s~y~~~~~~------~~~~~~~p~y~g~~~evGplAR~~~~~--~~~~~~~~~~~~AR~~E~~~~~~~~~e~l~~l~~ 310 (411)
T TIGR03295 239 PYNWYDDAEYA------MQACTTIPLYDGRPVEVGPRARMVKFK--NFKEKGAMAIHIARAMENPDALYRAIEILDELDC 310 (411)
T ss_pred CHHHHCCCCCC------CEEEEECCCCCCCCCCCCHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 82761685545------043100333189301215889999866--9775862888999999999999999999972655
Q ss_pred CCCCCCCCCCCCCCC-EEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCC
Q ss_conf 575557776158974-8999988951179999987998088999835875686889999708805759998976091205
Q gi|254780855|r 314 HFKLYTEGYHVPVGE-VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFG 392 (396)
Q Consensus 314 ~~~~~~~~~~~~~G~-GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~s 392 (396)
..+........++|+ |+|++|||||+|+|||+++ ||+|++||||||||||++++|++++|+++.+++++|||||||+|
T Consensus 311 ~~~~~~~~~~~~~~~~GvG~vEAPRG~L~H~~~i~-dG~I~~y~ii~PTt~N~~~~e~~l~g~~~~~~e~iiRSfDPCis 389 (411)
T TIGR03295 311 NGKVRADEIEQGDGKLGWGAHEAPRGCDVHMARVK-DGKIQEYTALVPTTWNFPTCGKATEGAPWQYAEVIMRAYDPCVS 389 (411)
T ss_pred CCCEECCCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHEECCCCHH
T ss_conf 79702577776889878999977871307899980-99995899988462127778866266753254053231785420
Q ss_pred CCCC
Q ss_conf 5359
Q gi|254780855|r 393 EVDR 396 (396)
Q Consensus 393 C~dr 396 (396)
|+.+
T Consensus 390 Ca~H 393 (411)
T TIGR03295 390 CATH 393 (411)
T ss_pred HHHC
T ss_conf 1736
No 2
>PRK10170 hydrogenase 1 large subunit; Provisional
Probab=100.00 E-value=0 Score=598.86 Aligned_cols=383 Identities=15% Similarity=0.130 Sum_probs=254.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 615998406868666775599999839-9899999880411578898740989878554431212344888999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai 84 (396)
+|. |-|+|++ ++||||+|+++||| ++|++|.. .++||||||+||+||||+||++||||||||||+||++||++|+
T Consensus 16 gkr--ivIdPvT-RIEGhL~i~v~vdd~gvV~dA~~-~~t~fRGFE~iL~GRdP~DA~~it~RICGIC~~sH~~As~~Al 91 (597)
T PRK10170 16 GRR--LVVDPIT-RIEGHMRCEVNINDQNVITNAVS-CGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 (597)
T ss_pred CCE--EEECCCC-CCCCCEEEEEEEECCCEEEEEEE-CCCCCCCHHHHHCCCCHHHHHHHHCCCCEECCHHHHHHHHHHH
T ss_conf 886--9978976-42365589999927985999998-4553012749857998668778766636318578999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------
Q ss_conf 998388578889999999999999998899987433430564--------------------------------------
Q gi|254780855|r 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-------------------------------------- 126 (396)
Q Consensus 85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-------------------------------------- 126 (396)
|+|+|++||+||++||||++.+++||||++|||+|+.+|+..
T Consensus 92 e~a~Gi~~P~na~llRnL~~~a~~l~dH~~Hfy~L~~pD~v~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~i~~rl~ 171 (597)
T PRK10170 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK 171 (597)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99709988862999999999999998899999872361343010111047277899987503454456277899999999
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------------------189999999999997899755976476336536200078989999999
Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIG 174 (396)
Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~ 174 (396)
.+|.+++++++.+.+++++||||+|||+++ +||+++.++.+....+.
T Consensus 172 ~~~~~g~~~~~~~g~~~~~~y~l~~e~~l~~~~~yl~al~~~r~~~~i~ai~GGk~pHps~i-VGGv~~~i~~~~~~~~~ 250 (597)
T PRK10170 172 KFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVG 250 (597)
T ss_pred HHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCHHHHHH
T ss_conf 87522432222477788802107814556788889999999999999999871778786642-27614666732233320
Q ss_pred ----HHHHHHHHHHHHHHHHHHCC--------HHHHHHHCCEE------------EECCCC-----CCCCCCCCCCCCCC
Q ss_conf ----99999999999999998448--------33344212211------------230333-----31023566510136
Q gi|254780855|r 175 ----CWCDSFPSALNDISDLLTGN--------RIFKQRNVNIG------------TVKLED-----AWGWGFSGVMIRGS 225 (396)
Q Consensus 175 ----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g------------~~~~~~-----~~~~~~~G~~~~~~ 225 (396)
..+...+.......+++... ..+...+...| .+.... ...+...|.+..++
T Consensus 251 ~~~~e~l~~~~~~~~~~~df~~~~~~~d~l~i~~~~~~~~~~G~G~~~~~~lsyg~fp~~~~~~g~~~~~~p~G~~~~g~ 330 (597)
T PRK10170 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGD 330 (597)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 20299999999999999999997341229999875111887188867765002256645567656433234785786685
Q ss_pred CCC---C---HH---HHCCCCCCC---------------CCCCC------------CCEEECCCCCHHHHHCCCHHHHHH
Q ss_conf 760---1---02---101754433---------------46775------------400101232012211000116875
Q gi|254780855|r 226 GAA---W---DL---RKSQPYECY---------------SELDF------------DIPIGKHGDCYDRYLVRMMEMRES 269 (396)
Q Consensus 226 g~~---~---~~---r~~~~~~~~---------------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s 269 (396)
... . |. .++..+++| ....+ .......+++|.+.+.+.....|.
T Consensus 331 ~~~~~~~d~~D~~~I~E~v~~swy~~~~~~~g~hP~~g~T~P~y~p~~~~g~~~~~~~~~~~~kYSW~KaPRY~g~~~Ev 410 (597)
T PRK10170 331 FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEV 410 (597)
T ss_pred CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 44446556568445188345432017787566787665126777776556777762224666651157433237976231
Q ss_pred HHHHHHHHHHHCCCCC-------------------CCCCCCCCHHHCCH--HHHHHHHHHHHHHCCCCC----------C
Q ss_conf 8999999962103578-------------------67201111230304--489999756754305755----------5
Q gi|254780855|r 270 VKIIRQCVNRLLGKNK-------------------VGPVSASDPKIVPP--KRADMKRSMESLIHHFKL----------Y 318 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~~~----------~ 318 (396)
++++|+.+.+..+... ...+....++.... ....++.+++.+....+. .
T Consensus 411 GPLAR~~v~~~~g~~~~~~~~d~~~~~~~l~~~~~~s~l~R~~AR~~E~~~~~~~~~~~l~~l~~~l~~g~~~~~~~~~~ 490 (597)
T PRK10170 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 (597)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 67888887524687478888999987507871000016999999999999999999999999998654577444554556
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHH
Q ss_conf 777615897489999889511799999879980889998358756868---------8999970880575------9998
Q gi|254780855|r 319 TEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAI 383 (396)
Q Consensus 319 ~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~i 383 (396)
.+...|.+|+|+|++|||||+|+||+++ +||||+|||||+|||||+| ++|+||+|++|.| +.++
T Consensus 491 ~p~~~P~~~~GvG~~EApRGaL~Hw~~I-~dGkI~nYQiivPTTWN~sPrD~~g~~Gp~E~aLigt~i~~~~~Pvei~r~ 569 (597)
T PRK10170 491 EPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRT 569 (597)
T ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEE-ECCEEECCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCEE
T ss_conf 8888987746999988787773468998-799990517889888868886989696889998479977899987411244
Q ss_pred HHHCCCCCCCC
Q ss_conf 97609120553
Q gi|254780855|r 384 LGSLDIVFGEV 394 (396)
Q Consensus 384 irSfDpC~sC~ 394 (396)
|||||||++|+
T Consensus 570 vrSfDPClaCa 580 (597)
T PRK10170 570 LHSFDPCLACS 580 (597)
T ss_pred EECCCCCCCCC
T ss_conf 34388630453
No 3
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=100.00 E-value=0 Score=590.89 Aligned_cols=382 Identities=15% Similarity=0.142 Sum_probs=255.1
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396)
+|.|.|++ ++|||++|+++||||+|+||+++ +++|||||+||+||||+||++||||||||||+||++||++|+|+|+|
T Consensus 4 rI~IdPvT-RIEGhl~i~v~ve~G~V~dA~~~-~~~fRGFE~~l~GR~p~dap~it~RICGIC~~sH~~As~~Ale~a~G 81 (567)
T PRK10467 4 RITIDPVT-RIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALN 81 (567)
T ss_pred EEEECCCC-CCCCCEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 38968866-32265489999989999999990-57654188986799877988875831441847799999999999709
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------------------------
Q ss_conf 8578889999999999999998899987433430564-------------------------------------------
Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------------------------------------- 126 (396)
Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~------------------------------------------- 126 (396)
++||++|++||||++.+++||||++|||+|+.+|+..
T Consensus 82 v~vp~~a~~lR~L~~~~~~iqsH~lHfy~L~~PDf~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 161 (567)
T PRK10467 82 IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPEKASEMLKGVSTWHLNSAEEFTKVQNKIKDLVAS 161 (567)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97887799999999999998888999998606421365102113867787775202434443167799999999987502
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHH--------
Q ss_conf ---------------------------189999999999997899755976476336536200078989999--------
Q gi|254780855|r 127 ---------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE-------- 171 (396)
Q Consensus 127 ---------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~-------- 171 (396)
.+|.+++++++.++++++++|||+|||++++|||+++.++.+...
T Consensus 162 g~~gi~~~g~~~h~~~~~p~~~~~~~~~~y~~al~~~r~~~~i~ai~gGk~pHp~~~vpGGvt~~~~~d~~~~l~~~rl~ 241 (567)
T PRK10467 162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 (567)
T ss_pred CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30000057767881211780234677888999999999999999998264557442204746677871124343089999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHCCEEEECC------------CCCCCCCCCCCCCCCCCCC----------
Q ss_conf 999999999999999999984-48333442122112303------------3331023566510136760----------
Q gi|254780855|r 172 DIGCWCDSFPSALNDISDLLT-GNRIFKQRNVNIGTVKL------------EDAWGWGFSGVMIRGSGAA---------- 228 (396)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~------------~~~~~~~~~G~~~~~~g~~---------- 228 (396)
.++..++...++.+..+..-. ....++..+...|.... .........|.....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~g~~~~ls~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (567)
T PRK10467 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSTYRPITSHSDE 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCH
T ss_conf 99999999999999987656999987555777517564562331453457877503236753524753332335443320
Q ss_pred CH---HHHC------------CCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-------
Q ss_conf 10---2101------------7544334677540010123201221100011687589999999621035786-------
Q gi|254780855|r 229 WD---LRKS------------QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKV------- 286 (396)
Q Consensus 229 ~~---~r~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------- 286 (396)
+. .++. .||.......+........++|.+.+.+....++.++++|..+.........
T Consensus 322 ~~~~~i~e~~~~s~y~~~~~~~P~~~~t~P~~~~~~~~~~YSw~Kapry~g~~~EvGPLARl~v~~~~~~~~~~~~~~~~ 401 (567)
T PRK10467 322 YLIKGIQESAKHAWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 (567)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 13323400366443047877798654035675555666776423246538962022777887643203785578999998
Q ss_pred ---------C-----CCCCCCHHHCCHHH------HHHHHHHHHH----HCCCCC-CCCCCCCCCC--CEEEEEECCCCE
Q ss_conf ---------7-----20111123030448------9999756754----305755-5777615897--489999889511
Q gi|254780855|r 287 ---------G-----PVSASDPKIVPPKR------ADMKRSMESL----IHHFKL-YTEGYHVPVG--EVYAAVEAPKGE 339 (396)
Q Consensus 287 ---------~-----~~~~~~~~~~~~~~------~~~~~~~e~l----~~~~~~-~~~~~~~~~G--~GvG~vEAPRG~ 339 (396)
. .......+.+.+.. ..+.++.+.+ ...... ...+..++.| +|+|++|||||+
T Consensus 402 ~~~~~~l~~~~~~~~~~~s~~~R~iaR~~e~~~~~~~l~~~~~~l~~~i~~~d~~~~~~~~~p~~~~~~GvG~~EAPRG~ 481 (567)
T PRK10467 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 (567)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 88887640366543445458999999999999999999999999987531577531357889888874379998778767
Q ss_pred EEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 799999879980889998358756868---------8999970880575------999897609120553
Q gi|254780855|r 340 FGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 340 L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|+||+++ +||+|++||||+|||||.+ ++|++|+|+++.| ++++|||||||+||+
T Consensus 482 L~H~~~i-e~G~I~~yqiIvPTtwN~sprd~~~~~g~~e~alig~~i~d~~~p~ev~~~iRSfDPClsCa 550 (567)
T PRK10467 482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 (567)
T ss_pred EEEEEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 0547996-39929898798978766342254678569999854999899754687655541688534216
No 4
>PRK06075 NADH dehydrogenase subunit D; Validated
Probab=100.00 E-value=0 Score=585.74 Aligned_cols=391 Identities=70% Similarity=1.187 Sum_probs=374.2
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
.+..++|+||+||+||+++||+|+.+++|||.|+++++++||+|||+||++++|++.+++.+++||||+|+++|.+|+|+
T Consensus 2 ~~~~~~~~l~vGP~Hp~~~G~~r~~l~~~GE~I~~~e~~~Gy~HRGiEKl~E~r~~~q~~~l~eRi~~~~s~~~~~ay~~ 81 (392)
T PRK06075 2 EEIDRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYAL 81 (392)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCCHHHCCEEECCCCCCCCCHHHHHHHH
T ss_conf 87686489714898999987608999963988988676158000008998747987764622023445441167899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
|+|+++||+||++|+++|.|+.++|||+||++++..++.+.|+.+.+.++++.|+.+.++++.++|.|.|+++++|||+.
T Consensus 82 AvE~l~gievp~RA~~iR~i~~ELeRI~sHL~~lg~~~~diG~~t~~~~~~~~RE~il~l~e~~tG~R~~~~~~~~GGv~ 161 (392)
T PRK06075 82 AVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTPFLWGFREREKLLDLYEAVSGARMHHAYIRPGGVR 161 (392)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 99999389988889989999999999999999999888750220788999999999999999971767454753468754
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
+++++..++++...++...+...++.+++..++.+..++.++|.++.+.+..++.+||..|+||+++|.|+..||..|+.
T Consensus 162 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~l~~~n~i~~~R~~gvGvls~e~A~~~g~~GP~~RASGv~~D~R~~~PY~~Y~~ 241 (392)
T PRK06075 162 RDLPDGLLEDIEDFLDYFPKRLDDYETLLTDNRIWKQRLVDIGVVSKEDALALGFTGPMLRGSGVAWDLRKSQPYEVYDE 241 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 57986899999999999999999999999609899998867073069999983986854123685023311577654343
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
.++...+...+|+++|...+..+..||.++.+|++++.+ +.+++..................++.+....+.....+
T Consensus 242 l~f~v~~~~~GD~~aR~~VR~~Ei~eSl~II~q~l~~l~---~~G~~~~~~~~~~~p~~~~~~~~~~~~i~~f~~~~~g~ 318 (392)
T PRK06075 242 LDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIRQCLDKLP---PPGPVMVDDPKIAPPPREEMKTSMEALIHHFKLFTEGF 318 (392)
T ss_pred CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCC
T ss_conf 675652056787899899999999999999999998478---99982036665579955654014576654131345665
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
++|+|++++.+|||||.++||+.+|+++++++++|++||+.|+++++.+++|+.++|++.|+.|||||++|+||
T Consensus 319 ~~P~Ge~~~~vE~prGe~~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~~~DR 392 (392)
T PRK06075 319 RVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMLRGHMLADVVAIIGSLDIVFGEVDR 392 (392)
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 58995289998738842899999779995589999698845899999997799302698996174767678789
No 5
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=100.00 E-value=0 Score=574.16 Aligned_cols=388 Identities=40% Similarity=0.727 Sum_probs=371.3
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56159984068686667755999998399899999880411578898740989878554431212344888999999999
Q gi|254780855|r 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84 (396)
Q Consensus 5 ~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai 84 (396)
..+.++||+||+||+++||+|+.+.+|||.|+++++.+||+|||+||++++|++.+.+.+|.||||+|+++|.+|.|+|+
T Consensus 188 ~~~~~~lnvGP~HP~~hG~~R~~l~ldGE~I~~~ep~iGy~HRGiEKl~E~~~~~q~i~~~dRi~y~~~~~~~~ay~~AV 267 (575)
T PRK11742 188 NEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAV 267 (575)
T ss_pred CCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECEEECCHHHHHCCCCHHHCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88748830589888765752799996697899877664313201788756587401524101033304657689999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 99838857888999999999999999889998743343056418999999999999789975597647633653620007
Q gi|254780855|r 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164 (396)
Q Consensus 85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~ 164 (396)
|+++||+||++|+.+|.|+.+++||+||+++++.++.+.|+.+.+..+++.|++++++++.++|.|.|+++.++||+..+
T Consensus 268 E~l~gievP~RA~~iR~il~ELeRI~sHLl~lG~~~~diG~~t~~~~~f~~RE~i~dl~E~ltG~R~~~~~~riGGV~~D 347 (575)
T PRK11742 268 EKLAGITVPDRVNVIRVMLSELFRINSHLLFIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHD 347 (575)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 99948987778988999999999999999999998877401689999999999999999997454762264455987525
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 89899999999999999999999999844833344212211230333310235665101367601021017544334677
Q gi|254780855|r 165 IPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELD 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~ 244 (396)
+++...+.+...++...+...++.+++..++.+..+..++|..+.+.+..++.+||.+|+||+++|.|+..||..|+..+
T Consensus 348 lp~~~~~~~~~~l~~~~~~l~e~~~l~~~n~i~~~R~~gVGvls~e~A~~~G~tGP~aRASGv~~DlRk~~PY~~Y~~ld 427 (575)
T PRK11742 348 LPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFD 427 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 98789999999999999999999999856967642227773544999998098465634578654112217764302376
Q ss_pred CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 54001012320122110001168758999999962103578672011112303044899997567543057555777615
Q gi|254780855|r 245 FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHV 324 (396)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~ 324 (396)
+...+...+|+++|..++.++..||.++.+|++++.+. |++....+......+...+..+|.+..+...++....+
T Consensus 428 F~vpv~~~GD~~aR~~VR~~E~~qSi~IIrQ~l~~mP~----Gpi~~d~p~~~~p~k~~~~~~ie~li~hf~~~~~g~~~ 503 (575)
T PRK11742 428 FEVPVGGNGDCYDRVMVKVEEIRQSLRIIEQCLDNMPE----GPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVM 503 (575)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 32120467765775778999999999999999974899----97435664457883455443278876651210357768
Q ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 325 PVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 325 ~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
|+|++++.+|||||.++||+.+|++++++|++|++||+.|+++++.+++|..|+|++.|+.|+|||++|+||
T Consensus 504 P~Ge~~~~vEapRGE~g~~v~sdG~~~pyR~kiR~PSf~nl~~l~~~~~G~~iaD~~~i~gSiD~v~~e~DR 575 (575)
T PRK11742 504 PANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575 (575)
T ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 995189966548814999999789996588998587746999999996799165799997072867678789
No 6
>PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
Probab=100.00 E-value=0 Score=566.24 Aligned_cols=389 Identities=41% Similarity=0.728 Sum_probs=356.3
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
..|+++|+||+||+||+++||+|+.+++|||.|+++++++||+|||+||++++|++.++..++.|+||+|+.+|.+|+++
T Consensus 5 ~~~~~~~~l~~GP~HP~~~g~~r~~l~ldGE~I~~~e~~iGy~HRG~EKl~E~r~~~~~i~l~eRi~~~~~~~~~~~~~~ 84 (394)
T PRK07415 5 ETRTEPMVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVN 84 (394)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEHHHHHHHHCCCCHHHCCEEEHHHCCCHHHHHHHHHHH
T ss_conf 55673489806898888887628999966978999760467102478998736976445232000024105178899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEECCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976-47633653620
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSR-MHAAYFRPGGV 161 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~-~Hp~~~vpGGv 161 (396)
|+|+++||++|++|+++|.|+.+++||+||+++++.++.+.|+.+.+.++++.|+.++++++.++|.| +|+++++|||+
T Consensus 85 AvE~l~gievP~RA~~iR~il~ELeRI~sHLl~lg~~~~diG~~t~~~~~~~~RE~i~~l~E~~tG~R~~~~~~~~iGGv 164 (394)
T PRK07415 85 APEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGV 164 (394)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99999489978899989999999999999999999999885141688899999999999999981776433675476877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 00789899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
.++++...++++.+.++...+...++.+++..++.+..+..++|..+.+.+..++.+||.+|+||+++|.|++.||..|+
T Consensus 165 ~~Dl~~~~~~~~~~~l~~~~~~i~~~~~l~~~n~i~~~R~~gvGvls~e~A~~~g~~GP~aRASGv~~D~Rk~~pY~~Y~ 244 (394)
T PRK07415 165 AADLPYGWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYD 244 (394)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 43688679999999999999999999999966961666509888589999998488364301267875021016752101
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67754001012320122110001168758999999962103578672011112303044899997567543057555777
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 321 (396)
..++...+...+|+++|...+..+..||.++.+|++++.+..+....... ............. + .....+...+.
T Consensus 245 ~~~f~v~~~~~GD~~aR~~VR~~Ei~eSl~II~q~l~~lP~Gp~~~~~~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~ 319 (394)
T PRK07415 245 DFDWDVAWETEGDCFARYRVRIEEMRESLKIIRQACKMIPGGPYENLEAK---RMAEGKKSEWNGF-D-YQYVAKKVAPT 319 (394)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCHHHHHHH-H-HHHHHCCCCCC
T ss_conf 47756716889878988998999999989999999974889986544432---3477732332000-2-66641235666
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 615897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 322 ~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
.++|+|+.++.+|||||.++||+.+|++++++|++|++||+.|+++++.+++|+.++|++.++.|+|||++|+||
T Consensus 320 ~~~P~Ge~~~~vEaprGE~~~yv~sdg~~~pyR~kiR~PSf~n~~~l~~~l~G~~iaD~~~i~~S~D~~~~~~DR 394 (394)
T PRK07415 320 FKIPNGELYTRLESGKGELGVFIQGNNDVTPWRWKIRAADFNNLQILPHILKGAKVADIMAILGSIDVIMGSVDR 394 (394)
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 658997089999658730899999789994688999698726999999997799353899997182877678788
No 7
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=100.00 E-value=0 Score=560.54 Aligned_cols=365 Identities=43% Similarity=0.804 Sum_probs=348.9
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45615998406868666775599999839989999988041157889874098987855443121234488899999999
Q gi|254780855|r 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83 (396)
Q Consensus 4 ~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~A 83 (396)
.|+++++||+||+||+++||+|+.+.+|||.|+++++++||+|||+||++++|++.+++.+++||||+||.+|.+|+|+|
T Consensus 2 ~~~~~~~l~~GP~Hp~~~g~~r~~l~~~GE~V~~~e~~~Gy~HRG~EKl~E~r~~~q~i~l~eRi~~~~s~~~~~a~~~A 81 (366)
T PRK12322 2 IRTEEMLLNVGPQHPSTHGVFRLVIKIDGEIIKEATPVIGYLHRGTEKIAESLQYTQIIPYTDRMDYLSAMTNNYVICHA 81 (366)
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCHHHCCEECCCCCCHHHHHHHHHHHHH
T ss_conf 76653898538989999876479999709689997841462217899997479877727311323300040789999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 99983885788899999999999999988999874334305641899999999999978997559764763365362000
Q gi|254780855|r 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163 (396)
Q Consensus 84 iE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~ 163 (396)
+|+++||++|++|+++|.|+.++|||+||++++..++.+.|+.+.+..+++.|+.++++++.++|.|.|+++++|||+..
T Consensus 82 vE~~~gievp~Ra~~iR~i~~ELeRI~sHL~~lg~~~~diG~~t~~~~~~~~RE~i~~~~e~itG~R~~~~~~~~GGv~~ 161 (366)
T PRK12322 82 VETMMGLEIPERAEYLRVLAMELGRIASHLVWWGTNLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKW 161 (366)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
T ss_conf 99994899888999999999999999999999999998762001788999999999999998728780027635675337
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 78989999999999999999999999984483334421221123033331023566510136760102101754433467
Q gi|254780855|r 164 DIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~ 243 (396)
++++...+++...++..++...++.+++..++.+..+..++|.++.+.+..++.+||..|+||+++|.|+..||..|+..
T Consensus 162 Dl~~~~~~~i~~~l~~~~~~~~~~~~~~~~n~i~~~R~~gvGvl~~~~A~~~g~~GP~~RASGv~~D~Rk~~pY~~Y~~l 241 (366)
T PRK12322 162 DAPDGWIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGANLRCTGVNWDLRKDEPYSIYDRF 241 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHCCEEECHHCCCCCCCHHCCCCCCCCCCC
T ss_conf 79868999999999999999999999984583877661782615699999849672203005775001103786432456
Q ss_pred CCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 75400101232012211000116875899999996210357867201111230304489999756754305755577761
Q gi|254780855|r 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~ 323 (396)
++...+...+|+++|...+.++..+|.++.+|++++.+.. +++....+ ...+
T Consensus 242 ~f~v~~~~~GD~~aR~~VR~~Ei~eSi~iI~q~l~~lp~~---g~~~~~~~-------------------------~~~~ 293 (366)
T PRK12322 242 DFDIPVGSVGDCWDRYVCRMQEIEESLKIIEQAVEQFPKE---GPVLAKVP-------------------------KIIK 293 (366)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCC-------------------------CCCC
T ss_conf 7555135777668767889999999999999999748866---87415576-------------------------5568
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 5897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 324 ~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
+|+|++++.+|||||.++||+.+|+++++++++|++||+.|+++++.+++|+.++|++.|+.|+|||++|+|-
T Consensus 294 ~p~Ge~~~~vE~pRGe~~~~v~sdg~~~p~R~kiR~Psf~n~~~l~~~~~G~~vaD~~~i~~S~d~~~ge~D~ 366 (366)
T PRK12322 294 APKGEAFVRIESPRGEIGCYIASDGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLITILGSVDIVLGEVDG 366 (366)
T ss_pred CCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9983799997569827999999889994799999798836999999997799240699997286856668899
No 8
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=100.00 E-value=0 Score=559.37 Aligned_cols=389 Identities=44% Similarity=0.792 Sum_probs=372.1
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45615998406868666775599999839989999988041157889874098987855443121234488899999999
Q gi|254780855|r 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALA 83 (396)
Q Consensus 4 ~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~A 83 (396)
.+.+.++||+||+||+.+|++|+.+++|||.|+++++.+||+|||+||+.+.|++.+.+.+|.|||++|+.+|.+|.++|
T Consensus 396 ~~~~~~vlNiGPqHPstHGvlr~~l~ldGE~Iv~~dp~iGYlHRG~EKlaE~~ty~Q~ip~tDRidyi~~~~n~~aY~~A 475 (784)
T PRK13292 396 VDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNS 475 (784)
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78874998679998766775579999718689885456562110668874348710352424602120041788999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 99983885788899999999999999988999874334305641899999999999978997559764763365362000
Q gi|254780855|r 84 VEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ 163 (396)
Q Consensus 84 iE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~ 163 (396)
+|+++||+||++|+.+|.|+.+++||+||+++++.++.+.|+.+.+..+++.|+++.++++.++|.|.|+++.++||+.+
T Consensus 476 VEkL~GIEVPeRAqyIRvIl~EL~RI~SHLl~lG~~a~DlG~~T~f~~~fr~RE~imdl~E~lTGaR~~~~~~rIGGVr~ 555 (784)
T PRK13292 476 VETLCGITVPDRAIYIRVMLAELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAE 555 (784)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCCC
T ss_conf 99993898777999899999999999999999999999877678999999999999999999742052506642188537
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 78989999999999999999999999984483334421221123033331023566510136760102101754433467
Q gi|254780855|r 164 DIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSEL 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~ 243 (396)
++++...+++...++...+...++.+++..++.+..+..++|.++.+.+..++.+||.+|+||+++|.|+..||..|+..
T Consensus 556 DLp~~~~~~i~~~l~~~~~~l~e~~~ll~~N~i~~~Rt~GVGvls~e~A~~~G~tGP~lRASGv~~DlRk~~PY~~Yd~l 635 (784)
T PRK13292 556 DLPEGWDEAVKAFLRWFPGRLKEYEDLLKGNPIFKARLKGVGAITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYERF 635 (784)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf 89979999999999999999999999971795577643765887799999857866411356750254403774310258
Q ss_pred CCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 75400101232012211000116875899999996210357867201111230304489999756754305755577761
Q gi|254780855|r 244 DFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYH 323 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~ 323 (396)
++...++..+|+++|..++.++..||.++.+|++++.+... ..............+.+..+|.+..+...++...+
T Consensus 636 dFeVpv~~~GD~yaR~lVRieEm~qSi~IIrQ~L~~mP~Gp----~~~~~~~~~lP~k~~~~~~iE~lI~hF~~v~~g~~ 711 (784)
T PRK13292 636 HFEVPTAEGGDCYARYLVRVEEMRQSLHIVRQAAAGMPGGR----WITDDYRYVLPKKRDTLHDIESLIHHFVNVTRGMA 711 (784)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 86542488888799889999999999999999997489998----44676543688455554227887665000356766
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 5897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 324 VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 324 ~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
+|.|++++.+|||||.++||+.+|++++++|++|++||+.|++++..+++|..++|++.|+.|+|+|++.+||
T Consensus 712 ~P~GE~y~~vEapRGE~g~yvvSdGs~~PYR~kIRtPSF~Nlqal~~~~~G~~iAD~vaIigSiD~V~gevDR 784 (784)
T PRK13292 712 PPKGECYSAIEAPKGENGYFVVSDGLNVAYRVRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 784 (784)
T ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9997779988468843899999789995378998488736999999997799188999997574877677899
No 9
>CHL00017 ndhH NADH dehydrogenase subunit 7
Probab=100.00 E-value=0 Score=557.06 Aligned_cols=389 Identities=42% Similarity=0.691 Sum_probs=355.9
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
.+|...++||+||+||+++||+|+.+++|||.|+++++++||+|||+||++++|++.+.+.++.|+|++|+.+|..++++
T Consensus 5 ~~~~~~~~l~vGP~Hp~~~g~~r~~l~ldGE~I~~~e~~~Gy~HRGiEKl~E~~~~~q~~~~~~R~~~~~~~~~~~~~~~ 84 (393)
T CHL00017 5 ATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN 84 (393)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCCHHHCCEEEEECCCCHHHHHHHHHHH
T ss_conf 87774499705897899977747999965978999784068010308677546976444242100002017678899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
|+|+++||++|++|+++|.|+.+++||+||++++..++.+.|+.+.+.++++.|+.++++++.++|.|.|+++++|||+.
T Consensus 85 AvE~l~gievP~RA~~iR~i~~ELeRI~sHl~~lg~~~~diG~~t~~~~~~~~RE~i~~l~e~ltG~R~~~~~~~iGGv~ 164 (393)
T CHL00017 85 APEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVA 164 (393)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99998389999999999999999999999999999999986416899999999999999999973877644650138866
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
.+++...+++++..++..++...++.+++..++.+..+..++|.++.+.+..++.+||.+|+||+++|.|+..||..|+.
T Consensus 165 ~Dl~~~~~~~~~~~l~~~~~~l~~~~~l~~~n~i~~~R~~gvGvls~e~A~~~g~~GP~aRASGv~~DvRk~~pY~~Y~~ 244 (393)
T CHL00017 165 ADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDE 244 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEECCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 78987899999999999999999999998579789998457301569999983981601012687421012277566331
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
.++...+...+|++++...+..+..||.++.+|++++.+..+.............. ..... .+. ....+...+.+
T Consensus 245 l~f~v~~~~~GD~~aR~~VR~~Ei~eSi~iI~q~l~~lP~Gp~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~ 319 (393)
T CHL00017 245 FDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKD---PEWND-FEY-RFISKKPSPTF 319 (393)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---HHHHH-HHH-HHHCCCCCCCC
T ss_conf 47677566676468878999999999999999999858899865543112466541---13444-456-64103556665
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
++|+|+.++.+|||||.|+||+.+|++++++|++|++||+.|+++++.+++|+.++|++.++.|+|||++|+||
T Consensus 320 ~~P~ge~y~~vEapRGE~g~~~~sdg~~~pyR~kiR~Psf~n~~~l~~~~~G~~iaD~~~i~~S~D~v~ge~DR 393 (393)
T CHL00017 320 ELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393 (393)
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 58997779988568822899999789994479999798715899999997799065899997180877688788
No 10
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=545.80 Aligned_cols=365 Identities=34% Similarity=0.489 Sum_probs=346.4
Q ss_pred CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74456159984068686667755999998399899999880411578898740989878554431212344888999999
Q gi|254780855|r 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81 (396)
Q Consensus 2 ~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~ 81 (396)
.++--.+|++|+||+||++++|.|+.+.|+||+|+++++..||.|||+|++++|+++.++..+++|||||||.+|++|++
T Consensus 2 ~~~~~g~~~ip~GP~H~gl~EP~~frl~v~GE~Iv~~di~~~y~hRGIEki~~g~~~~~a~~LaERVcGicS~aH~~~f~ 81 (382)
T COG3261 2 GKGGEGEFEIPVGPVHPGLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKALFLAERVCGICSFAHAVAFV 81 (382)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77787448975278874556762599985794577777899875000578743798899999999873224778899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 99999838857888999999999999999889998743343056418999999999999789975597647633653620
Q gi|254780855|r 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161 (396)
Q Consensus 82 ~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv 161 (396)
.|+|+++||++|++|+.+|-|++++||||||++.+..++.+.|+.....+.+.+|++.+++++.++|.|...++.++||+
T Consensus 82 ~avE~~~~IEvPera~~iRai~~ELERihSHLl~l~~~~~~vg~~t~~~~~~~~RE~vm~~~e~iTG~R~~~G~n~iGGV 161 (382)
T COG3261 82 LAVEDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHDVGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGGV 161 (382)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCE
T ss_conf 99999737998818889999999999999999988655331364068889999999999999987376324055202444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 00789899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
.+++.+..++.+...++...+.++...+.+...+.+.++...+|....+.+..+...||..++||...|.|..+++.+|.
T Consensus 162 r~Di~~~~~~~~~~~i~~~~~e~~~~~e~~l~~p~i~~R~~~vGvi~~~~a~~~~~vGP~aRaSGi~~D~R~d~~~~~y~ 241 (382)
T COG3261 162 RRDILESDLEQILELIEDIREEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSAVGPTARASGIADDARIDHPPVYYD 241 (382)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHCCCCCCHHHCCCCCCCCC
T ss_conf 13551778999999999999999999999834838999742575558899876326683121367830333147776657
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67754001012320122110001168758999999962103578672011112303044899997567543057555777
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 321 (396)
..++.......+|+.++...+..+..+|.++.+++++..+..+ .+... +.
T Consensus 242 ~l~f~~i~~~eGDvfaR~~VR~~Ei~~S~~lI~~~ld~lp~~~-~~~~~-----------------------------~~ 291 (382)
T COG3261 242 ELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQALDNLPGGP-GGLLR-----------------------------EK 291 (382)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC-----------------------------CC
T ss_conf 7885202215752788889899999999999999998488988-76557-----------------------------42
Q ss_pred CCCC-CCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 6158-97489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 322 YHVP-VGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 322 ~~~~-~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
...+ .|+|.|.+|||||.|.||+++++||+|++++|+|||..|+++++.+|+|.+|+|+++++.|||||+|||||
T Consensus 292 ~~~~~~g~g~~~vEApRGel~h~v~l~~~g~i~r~~irtPS~~Nl~a~~~ml~g~~V~Da~l~~~S~dpc~sctdr 367 (382)
T COG3261 292 LELKGHGEGLGRVEAPRGELVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADAPLIIASLDPCYSCTDR 367 (382)
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCEE
T ss_conf 0235876313565437774799999568985888897478636889999985788655433554136744001306
No 11
>TIGR01962 NuoD NADH dehydrogenase I, D subunit; InterPro: IPR010219 This entry recognises specifically the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a subunit C/D fusion.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=100.00 E-value=0 Score=553.00 Aligned_cols=387 Identities=61% Similarity=1.081 Sum_probs=375.2
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
++++||+||+||..||-||+.+++|||.|++|++++||+|||+||+++.|.+.++...|.|+-=+||.+|-+|+|+|||+
T Consensus 1 ~~~~lNlGPQHPStHGvLRLiLelDGE~v~~a~P~IGYLHRG~EK~~E~~tY~q~~Py~DRlDYls~~~ne~AY~LAVEK 80 (408)
T TIGR01962 1 EEMILNLGPQHPSTHGVLRLILELDGEQVVRADPHIGYLHRGTEKLAENRTYTQAIPYTDRLDYLSPFSNELAYALAVEK 80 (408)
T ss_pred CEEEEECCCCCCHHHCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 91578458888221111014466058589885267776212578876433333116734325551510100488888787
Q ss_pred HHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 838--857888999999999999999889998743343056418999999999999789975597647633653620007
Q gi|254780855|r 87 LLG--IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD 164 (396)
Q Consensus 87 a~g--i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~ 164 (396)
++| ++||.+|+.+|.|+.|+.||.||++.+....++.|+-++.+.+|+.||+++++++.++|-|.|+++++||||..+
T Consensus 81 LlGit~evP~RA~vIRV~l~EL~RI~sHLl~igt~~lD~GAmTp~lyaFr~RE~~~DL~E~~~G~RM~~~y~R~GGV~~D 160 (408)
T TIGR01962 81 LLGITIEVPRRAQVIRVILLELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVAED 160 (408)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 70761246731589999999988998899999998777877769999888799999999876300246676345871321
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 89---899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 165 IP---PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 165 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
++ +.+++.+.++++++.+-..+..+++..+..|+.|.+++|+.+.+.+-.+|.+|+.+|+||++||.||..||..|+
T Consensus 161 LPdf~~n~l~~i~~Fl~~~p~~l~~~e~Ll~~NrIwk~R~~gVGvv~~~~A~~~G~tG~~LRgsGi~~D~RK~~PY~~Y~ 240 (408)
T TIGR01962 161 LPDFMENWLEEIREFLEQFPKRLKDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKEEPYEGYD 240 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEECHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHH
T ss_conf 03454338999999998614559999999872616775215763007699984489864521236420256677632020
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHH----------------HHHHH
Q ss_conf 67754001012320122110001168758999999962103578672011112303044----------------89999
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK----------------RADMK 305 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 305 (396)
..++...+...+|+++|...+..|..||.++.+|++.+.+. .|++....+..+... +.+++
T Consensus 241 ~~DFdVp~~~~GDcY~Ry~~r~~E~~ES~kIieQC~~~~~~---~GP~~~~~p~~~~P~Dlq~GPdGlGnsPkhik~~~~ 317 (408)
T TIGR01962 241 ELDFDVPVGENGDCYDRYLLRVLEMRESIKIIEQCLEKLRT---PGPIKADNPKLAPPPDLQVGPDGLGNSPKHIKEEMK 317 (408)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 26565431888862045566788899899999998873588---588031788630671002577656777489999986
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 75675430575557776158974899998895117999998799808899983587568688999970880575999897
Q gi|254780855|r 306 RSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILG 385 (396)
Q Consensus 306 ~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iir 385 (396)
..+|.+..+.+.+++...+|.||.+.+||||||.|+.|+.+|+.++.+|.+|++||+||++.++.++.|.-++|+-.++.
T Consensus 318 ~~mEaLI~HF~L~t~G~~vP~GEvY~~~EsPKGElG~yi~SDG~~~PYR~k~RaPSF~hLQ~l~~~~~G~~lAD~ia~~g 397 (408)
T TIGR01962 318 TSMEALIHHFKLVTEGFRVPAGEVYVAIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMLVGHYLADLIAILG 397 (408)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 44678888887753377288986000045248730378884188985367763864366888999860206888899876
Q ss_pred HCCCCCCCCCC
Q ss_conf 60912055359
Q gi|254780855|r 386 SLDIVFGEVDR 396 (396)
Q Consensus 386 SfDpC~sC~dr 396 (396)
|.||-++.+||
T Consensus 398 s~D~V~GeVDR 408 (408)
T TIGR01962 398 SIDIVMGEVDR 408 (408)
T ss_pred HCCCCCCCCCC
T ss_conf 05733346689
No 12
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=550.28 Aligned_cols=382 Identities=17% Similarity=0.207 Sum_probs=271.8
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396)
+|.+-|+. ++|||||++++||+++|++|. +.|+||||||+||+||||+||+.|||||||||+++|++||++|+|+|+|
T Consensus 3 rIvvDPvT-RIEGhlrievevd~~~ItdA~-ssgtlfRG~E~ILkgRDPrDA~~~tqRICGVCt~~Ha~Asv~AlE~Alg 80 (545)
T COG0374 3 RIVVDPVT-RIEGHLRIEVEVEDGVITDAW-SSGTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALG 80 (545)
T ss_pred EEEECCCC-EEEEEEEEEEEECCCCEEEEE-ECCEEHHHHHHHHCCCCHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 47845753-042047889997378533502-2211150699997389802556653400105751889999999998658
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------------------
Q ss_conf 857888999999999999999889998743343056--------------------------------------------
Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA-------------------------------------------- 125 (396)
Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~-------------------------------------------- 125 (396)
|+||+||.++|||+++++++|||+.|||.|+.++..
T Consensus 81 ItvP~nA~~~Rni~~~~~~v~dHivhfY~L~~~D~~~~~~~l~~dp~~~~~~a~~~s~~~~~~~g~~~~vq~~~~~~v~~ 160 (545)
T COG0374 81 ITVPVNALLIRNIMQAALFVHDHIVHFYQLHGLDWVDVVSALKADPYKASELAQSYSSWPKNSPGYFKEVQNRLKDFVES 160 (545)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88880179999999999999888888864215113436764125836666665413467556863034566666652243
Q ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH----HHHHHHH
Q ss_conf --------------------------4189999999999997899755976476336536200078989----9999999
Q gi|254780855|r 126 --------------------------LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPE----LVEDIGC 175 (396)
Q Consensus 126 --------------------------~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~----~~~~~~~ 175 (396)
..+|..++..++.+.+++++||||.|||++..+||++..++.. .+..+..
T Consensus 161 g~lg~f~~g~w~h~~y~l~p~~nli~~ahyl~~l~~qr~~~~~~a~fggk~Ph~~~~~vggv~~~~~~d~~~e~l~~~~~ 240 (545)
T COG0374 161 GQLGIFANGYWGHPAYKLPPEVNLIVVAHYLEALEFQREIVKIVALFGGKNPHPQNLAVGGVTCPINLDSPMERLNEVKS 240 (545)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 31223135556786556786678457632388999999999999864365766766656754125575318999999999
Q ss_pred HHHHHHHHHHHHH--HHHHCCHHHHHH---------HCCEEEECC--CCCCCCCCCCCCCC---CCCCCCHHH-------
Q ss_conf 9999999999999--998448333442---------122112303--33310235665101---367601021-------
Q gi|254780855|r 176 WCDSFPSALNDIS--DLLTGNRIFKQR---------NVNIGTVKL--EDAWGWGFSGVMIR---GSGAAWDLR------- 232 (396)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~g~~~~--~~~~~~~~~G~~~~---~~g~~~~~r------- 232 (396)
.......+....+ |.......+.++ +...|.+.. .....+...|+... ..-...|..
T Consensus 241 ~i~~~~~f~~~~~~~D~~~~a~~y~~~~~~g~g~~~~ls~g~~pd~~~~~~~l~p~g~~~~~~~~~~~~~d~~~I~E~vt 320 (545)
T COG0374 241 IIKKLADFINNVYLPDLEAIAAFYKEWVTIGGGLSNMLSYGEFPDDVDNGSLLDPGGVIINNNLSPSDELDISKIQEFVT 320 (545)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99988988887231209999998788776065621010324367866743042676310378766422045888877654
Q ss_pred --------HCCCCCCCCCCCCCCEE--ECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------C
Q ss_conf --------01754433467754001--01232012211000116875899999996210357867--------------2
Q gi|254780855|r 233 --------KSQPYECYSELDFDIPI--GKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVG--------------P 288 (396)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------------~ 288 (396)
.-+|+.......+.... ...+++|.+++.+.....|.++++|+.+.+........ .
T Consensus 321 HsWY~~~~~lhP~dg~T~p~~~~~~~d~~~~YSWiKAPry~g~~~EVGPLAR~li~~~~~~~~~~~~~~~~~~~~~~~St 400 (545)
T COG0374 321 HSWYDDENGLHPWDGTTNPDYDGRSLDEKSKYSWIKAPRYDGKPVEVGPLARMLIAYAPGSTNLQEAKFTELPLEGIFST 400 (545)
T ss_pred HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 10364578779877876888886544655674465467648844541718999986367863212320004665432027
Q ss_pred CCCCCHHHCCH--HHHHHHHHHHHHHCCCCCC----CCCCC--CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECC
Q ss_conf 01111230304--4899997567543057555----77761--5897489999889511799999879980889998358
Q gi|254780855|r 289 VSASDPKIVPP--KRADMKRSMESLIHHFKLY----TEGYH--VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360 (396)
Q Consensus 289 ~~~~~~~~~~~--~~~~~~~~~e~l~~~~~~~----~~~~~--~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~P 360 (396)
..+..++..+. ....++.+..++....+.. ..... -.+++|+|++|||||+|+||+.++ ||+|++||+|+|
T Consensus 401 ~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~~~~~t~~~~~~~t~e~kG~G~~EApRGaL~HWi~I~-~gkI~nYQ~VvP 479 (545)
T COG0374 401 LGRTAARVLEAKAAANILLKWLEELMENLKKGDATTFNPENPATWEGKGVGLTEAPRGALGHWVVIK-DGKIKNYQAVVP 479 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEC-CCEEECCEEECC
T ss_conf 8899999999999999999999999845655443513667866544554110023654320018956-968606605655
Q ss_pred CCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 756868---------8999970880575------999897609120553
Q gi|254780855|r 361 GYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 361 T~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
||||++ ++|++|+||.++| +.+++||||||++|+
T Consensus 480 STWN~sPRd~kG~~G~~E~aLiGtki~~~~~Pleilr~~rSFDPClaCa 528 (545)
T COG0374 480 STWNASPRDAKGQRGPYEQALIGTKIADPEQPLEILRTIHSFDPCLACA 528 (545)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHCE
T ss_conf 5444678665789876778870788776656552310001367333203
No 13
>pfam00374 NiFeSe_Hases Nickel-dependent hydrogenase.
Probab=100.00 E-value=0 Score=539.03 Aligned_cols=347 Identities=17% Similarity=0.134 Sum_probs=238.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898740989878554431212344888999999999998388578889999999999999998899987433430564
Q gi|254780855|r 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126 (396)
Q Consensus 47 RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~ 126 (396)
||||+||+||+|+||++||||||||||+||++||++|+|+|+|++||++|++||||++.+++||||++|||+|+.||+..
T Consensus 1 RGFE~~L~GR~~~dap~it~RICGIC~~aH~~Aa~~Ale~a~Gv~~p~~a~~lR~L~~~~e~iqsH~lhfy~L~~PDf~~ 80 (504)
T pfam00374 1 RGLEVILKGRDPRDAWAFVQRICGVCTGTHALASVRAVEDALGIKIPKNARLIRNLMLAALYLHDHIVHFYHLHALDWVD 80 (504)
T ss_pred CCCCHHHCCCCHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 97205517998768889866734309078999999999987099779789999999999999989999999850640055
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q ss_conf ---------------------------------------------------------------------18999999999
Q gi|254780855|r 127 ---------------------------------------------------------------------TPPLWGFEERE 137 (396)
Q Consensus 127 ---------------------------------------------------------------------~~~~~~~~~r~ 137 (396)
.+|.+++++++
T Consensus 81 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~al~~~~ 160 (504)
T pfam00374 81 VTSALKADPKKASELAQSVSPWPKSSGYFKAVQNRLKKFVESGQLGIFTNAYWGHPAYKLPPEANLIAVAHYLEALDVQR 160 (504)
T ss_pred CHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 02222248366777754315554431689999999998763143122466556673123783330467787999999999
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHCCEE-----
Q ss_conf 999789975597647633653620007898-----999999999999999999999--99844833344212211-----
Q gi|254780855|r 138 KLMVFYERASGSRMHAAYFRPGGVHQDIPP-----ELVEDIGCWCDSFPSALNDIS--DLLTGNRIFKQRNVNIG----- 205 (396)
Q Consensus 138 ~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g----- 205 (396)
.++++++++|||+|||++++|||+++.++. +.+..+...++...++..... +.+.....+.+.....|
T Consensus 161 ~~~ei~~i~gGr~~Hp~~~vpGGvt~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~ 240 (504)
T pfam00374 161 DAVKIHAIFGGKNPHPQNTVVGGVTCAINLDGLGAERLAEVKALIKEVAEFVENVYLPDVLAIGGFYKDWLYGGGLSGKN 240 (504)
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999738788868746687767888784689999999999999999999876266999999877776505777776
Q ss_pred -----EECCC---CCCCCCCCCCCCCCCC---CCCHH---HHCCCCCCCCCC--------------CCCC-EEECCCCCH
Q ss_conf -----23033---3310235665101367---60102---101754433467--------------7540-010123201
Q gi|254780855|r 206 -----TVKLE---DAWGWGFSGVMIRGSG---AAWDL---RKSQPYECYSEL--------------DFDI-PIGKHGDCY 256 (396)
Q Consensus 206 -----~~~~~---~~~~~~~~G~~~~~~g---~~~~~---r~~~~~~~~~~~--------------~~~~-~~~~~~~~~ 256 (396)
.+... ....+...|....... ..+|. .++.++++|+.. .+.. ......++|
T Consensus 241 ~l~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~i~E~~~~s~y~~~~~~~~hp~~~~t~p~~~~~~~~~~~YSw 320 (504)
T pfam00374 241 VLSYGEFPKDDYDKKSFLLPGGVIINGDLTEVHPVDEDLIEEFVKHSWYDYGDEKGLHPWDGVTDPKYTLGPDEDGKYSW 320 (504)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35536755565664300137853765864300245311002115630001466545676456677664556555677430
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCC----------------C---CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCC
Q ss_conf 221100011687589999999621035----------------7---86720111123030--44899997567543057
Q gi|254780855|r 257 DRYLVRMMEMRESVKIIRQCVNRLLGK----------------N---KVGPVSASDPKIVP--PKRADMKRSMESLIHHF 315 (396)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~ 315 (396)
++.+.+.+...+.++++|..+...... . ....+.++++++++ .+.+.++++++.+....
T Consensus 321 ~Kapry~g~~~evGPLARl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~r~~AR~iE~~~~~e~~~~~l~~l~~~~ 400 (504)
T pfam00374 321 IKAPRYKGKAMEVGPLARMLVAYAKGRERVKEQVDRVLKKLNLPLSALFSTLGRTAARALECKLAADYMQVALDKLVTNI 400 (504)
T ss_pred EECCCCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 02532689633425999999734149957899999999982788510036899999999999999999999999998625
Q ss_pred CCCC---------CCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCC
Q ss_conf 5557---------77615897489999889511799999879980889998358756868---------89999708805
Q gi|254780855|r 316 KLYT---------EGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQL 377 (396)
Q Consensus 316 ~~~~---------~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i 377 (396)
+... ....+.+|+|+|++|||||+|+||+++ +||+|++||||||||||++ ++|++|+|+++
T Consensus 401 ~~~~~~~~~~~~~~~~~p~~g~GvG~~EAPRG~L~H~~~i-e~G~I~~y~iIvPTtwN~sprd~~~~~g~~E~aligt~i 479 (504)
T pfam00374 401 KAGDSSTNVEKWEPSTWPKEAKGVGFTEAPRGALSHWIRI-KDGKIENYQAVVPTTWNAGPRDAKGNIGPYEASLIGTPM 479 (504)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE-CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 4677655456657778987617999987787660458998-398697877989887772323668894899998469977
Q ss_pred CH------HHHHHHHCCCCCCCC
Q ss_conf 75------999897609120553
Q gi|254780855|r 378 AD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 378 ~D------~~~iirSfDpC~sC~ 394 (396)
.| ++++|||||||+||+
T Consensus 480 ~~~~~~~e~~~~iRsfDPClsCa 502 (504)
T pfam00374 480 ADPEQPVEILRTVHSFDPCLACA 502 (504)
T ss_pred CCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 89885375541321588740000
No 14
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=100.00 E-value=0 Score=521.03 Aligned_cols=391 Identities=61% Similarity=1.049 Sum_probs=377.9
Q ss_pred CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74456159984068686667755999998399899999880411578898740989878554431212344888999999
Q gi|254780855|r 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYA 81 (396)
Q Consensus 2 ~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~ 81 (396)
.+++.+.+.|+|||+||+.+|++|+.+++|||.|++|++.+||+|||+||+.+.|.+.+...++.|+|=+++..+.+|.+
T Consensus 8 ~~~~~~~~~ln~GPqHPs~hG~lRlil~ldGE~Vv~~~p~iGylHRg~EKl~E~r~y~q~ipy~dR~dy~~~~~ne~ay~ 87 (398)
T COG0649 8 SEENTENMFLNFGPQHPSTHGVLRLILELDGEIVVDADPDIGYLHRGMEKLAENRTYLQNIPYTDRLDYLSAMNNELAYV 87 (398)
T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHH
T ss_conf 21355544896479998878717999996385888605866630011788764144043645542654214221158999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 99999838857888999999999999999889998743343056418999999999999789975597647633653620
Q gi|254780855|r 82 LAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGV 161 (396)
Q Consensus 82 ~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv 161 (396)
.|+|+++||+||++|++||.|+.++.||.||++++..++.+.|+-+.+..+++.|+++.++++.++|.|.|+++.+||||
T Consensus 88 ~AvEkLlgieVPeRAq~IRvm~~EL~RI~sHLl~lg~~~~dlGa~T~f~yaf~eRE~i~~l~E~~tGaRm~~~y~rpGGV 167 (398)
T COG0649 88 LAVEKLLGIEVPERAQYIRVMLSELNRIASHLLWLGTFALDLGAMTPFLYAFREREKIMDLFEAITGARMHHAYFRPGGV 167 (398)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999838987647899999999999999999998766664113306664267889999999997464310154325771
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 00789899999999999999999999999844833344212211230333310235665101367601021017544334
Q gi|254780855|r 162 HQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~ 241 (396)
.+++++..++.+...++...+-..++..++..++.+..+.+++|+.+.+.+..+|.+||.+++||+.||.|+.+||..|+
T Consensus 168 ~~DlP~~~~e~i~~f~d~~~~~l~eye~l~~~N~I~~~R~~gVGv~s~e~A~~~G~tGp~lR~SGv~~DvRK~~PY~~Yd 247 (398)
T COG0649 168 RRDLPEGWLELIREFLDYFPKRLDEYEKLLTKNRIWRARLEGVGVLSKEEALEWGVTGPMLRASGVDYDVRKDEPYEAYD 247 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 24688779999999999877767899998750868887505600532999998388675523557743120467333414
Q ss_pred CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67754001012320122110001168758999999962103578672011112303044899997567543057555777
Q gi|254780855|r 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEG 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 321 (396)
..++...++..+|++++...+.++..||.++.+|++++.+ .++............++.++..++.+....+..+..
T Consensus 248 ~~dFdVpv~~~GD~yaR~lvR~~EmrqS~rIIeQcl~~l~----~gP~~~~~~~~~~p~~~~~~~~~e~li~~f~l~~~g 323 (398)
T COG0649 248 ELDFDVPVGKNGDCYARYLVRMEEMRQSIRIIEQCLDKLP----KGPVKNEDPKTTPPSKERMKESMEALIHHFKLVTEG 323 (398)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECC
T ss_conf 3504053367875055420109998988999999997576----999776433347985577664399875413410036
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 615897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 322 ~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
+++|+||.++.+|||||.++.++.+|++.+.+|.+|++||++|+++++.+++|..++|+..|+.|+|+|++.+||
T Consensus 324 ~~vP~GE~y~~vE~~kGE~g~yv~SDG~~kPYR~kiR~Psf~~L~~~~~~~~G~~~AD~~ailGS~D~v~gEvDR 398 (398)
T COG0649 324 FKVPAGEVYAAVEAPKGELGVYIVSDGSNKPYRVKIRAPSFAHLQALPELLKGHRLADLIAILGSIDIVMGEVDR 398 (398)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 448998657765347750799999579988515786487766899889884787478789998156766787789
No 15
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=506.85 Aligned_cols=384 Identities=17% Similarity=0.071 Sum_probs=286.0
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEC-CEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5998406868666775599999839-989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 8 SFTINFGPQHPAAHGVLRLILELDG-EIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 8 ~~~~~~gp~~~~~~g~l~~~~~v~~-~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
+.+|.+-|+. +++||+++.++||+ |+|.+++++ .+.+||||+|++||++++||.|++||||||+++|++||++|+|+
T Consensus 2 ~~~I~I~p~T-RiEGhakv~i~vdd~G~V~~~~~~-it~~RgfEk~~~Gkp~EeaP~i~~RICgiC~~sH~LAs~eA~e~ 79 (441)
T COG3259 2 MMRIEIDPVT-RIEGHAKVTIEVDDDGIVEDARFH-ITEVRGFEKFVLGKPIEEAPRIVPRICGICPASHHLASVEAAEA 79 (441)
T ss_pred CEEEEECCCC-CCCCCEEEEEEECCCCCEEEEEEE-ECCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 5059835544-557722799998688853335788-41451187885389867735776433005753778889999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 83885788899999999999999988999874334305641-------------89999999999997899755976476
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT-------------PPLWGFEEREKLMVFYERASGSRMHA 153 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~-------------~~~~~~~~r~~~~~~~~~~gG~~~Hp 153 (396)
|+|++||+.+++||+|++.+++|+||++|||+|+.||+... ..+.++++|+.+|.+++.+|||.+||
T Consensus 80 a~gveip~~~~~LREl~~~g~~i~SHALh~y~La~PDfl~~~d~~~~~i~~~~e~~k~~i~Lr~~gq~Iv~~lGGk~IHp 159 (441)
T COG3259 80 ALGVEIPEEAEKLRELLNIGNIIESHALHLYFLAAPDFLGPPDADPGMIDEYPELAKEAIRLRKIGQTIVEVLGGKAIHP 159 (441)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52875782899999998777787664778888607622478666725544428999999999999999999866877788
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC--CCCHH
Q ss_conf 3365362000789899999999999999999999999844833344212211230333310235665101367--60102
Q gi|254780855|r 154 AYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG--AAWDL 231 (396)
Q Consensus 154 ~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g--~~~~~ 231 (396)
++.+|||+.+.+++..++++.+.+++....+....+++.........-+............+...+...+..+ ..|+.
T Consensus 160 ~~~~pGG~~~~lsee~~~~l~~~ake~~~lA~~~~e~~~~l~er~~~~~~~~~g~v~~g~~~~~y~~~~~~~d~~~~fd~ 239 (441)
T COG3259 160 VNAVPGGVAKNLSEEAREKLLDRAKEALELADRTVELFKELLERMEEEESYHLGLVKKGDHPEPYDGSIRAYDDREKFDP 239 (441)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCH
T ss_conf 76677744788987899999999999999999999999999997641343200346777645654644885264134898
Q ss_pred HHCCCCCCCCCCCCCCEEEC----CCCCH---HHHHCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHCCH--HH
Q ss_conf 10175443346775400101----23201---221100011687589999999621035-7867201111230304--48
Q gi|254780855|r 232 RKSQPYECYSELDFDIPIGK----HGDCY---DRYLVRMMEMRESVKIIRQCVNRLLGK-NKVGPVSASDPKIVPP--KR 301 (396)
Q Consensus 232 r~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~ 301 (396)
.++..+-+....++++.... .+... .....+........+.++...+..... .......++.++++.. .+
T Consensus 240 ~~y~d~i~E~~~~~s~~K~~y~k~lG~p~y~vg~larl~~~~~~~~p~Ar~~~~e~~~~~g~~~~~~~h~ARaiEi~~~~ 319 (441)
T COG3259 240 DEYEDIIPESVYPYSYLKHPYYKDLGYPDYRVGPLARLDGCPVMVGPRARELYEENFEELGGTHSFAYHLARAIEILYAL 319 (441)
T ss_pred HHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99866333101253231264454558843033531110377644671799999976875177637999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCC----
Q ss_conf 9999756754305755577761589748999988951179999987998088999835875686889999708805----
Q gi|254780855|r 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQL---- 377 (396)
Q Consensus 302 ~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i---- 377 (396)
+.+.++++.+.... .+.....++.|+|+|++|||||+|+|++++++||+|..|+|||||+||.++|+.++.+...
T Consensus 320 e~a~~lL~~ld~~~-k~r~~~e~~~geGvg~vEAPRGtlvH~~~vdenG~I~~~niIvaT~~N~~ame~~v~~~a~~~~~ 398 (441)
T COG3259 320 ERAIELLDELDITG-KVRADVEPKAGEGVGVVEAPRGTLVHHYRVDENGRIKKANIIVATTFNVPAMEKAVRGVAERYIE 398 (441)
T ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999862323478-75443667777314778647614899999748980777878840314567788999999999973
Q ss_pred -------CHHHHHHHHCCCCCCCC
Q ss_conf -------75999897609120553
Q gi|254780855|r 378 -------ADVSAILGSLDIVFGEV 394 (396)
Q Consensus 378 -------~D~~~iirSfDpC~sC~ 394 (396)
.-+|++||+||||+||.
T Consensus 399 ~~~~~~~~~~E~viRAyDPC~sCa 422 (441)
T COG3259 399 TVPEGLLNLVEMVIRAYDPCLSCA 422 (441)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 022777778887776417268889
No 16
>KOG2870 consensus
Probab=100.00 E-value=0 Score=403.29 Aligned_cols=386 Identities=65% Similarity=1.163 Sum_probs=376.2
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
+.+++++||+||..+|-||+.+++|||.|++|++++|++|||.||+.+.|.+.+++...-|.--+.-.....|.+.|+|+
T Consensus 67 ~n~~~NfGPqHPaaHGVlRlvleldgE~V~~a~PhiGlLHRgtEKliEykty~QaLPYfdRlDYvsmM~nE~a~slavEk 146 (452)
T KOG2870 67 RNMILNFGPQHPAAHGVLRLVLELDGEVVVKAEPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQAYSLAVEK 146 (452)
T ss_pred HEEEECCCCCCCCHHCHHHEEEEECCCEEEECCCCHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10365158898320111330344067156505752104440489887778887634631178899999888887766998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 83885788899999999999999988999874334305641899999999999978997559764763365362000789
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP 166 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~ 166 (396)
.++|+||.+|+++|.|+.+..||+||++++.-...+.|+-+++++.++.|++..+..+...|.+.|.++++|||+..+++
T Consensus 147 Llni~vP~RA~yIRvlf~EitRi~nH~malgt~alDvGA~TPffw~FeEREkl~ef~ErvsGaRmha~yiRpGGva~DlP 226 (452)
T KOG2870 147 LLNIDVPLRAKYIRVLFGEITRIANHIMALGTHALDVGAMTPFFWLFEEREKLYEFYERVSGARMHANYIRPGGVAQDLP 226 (452)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 51888860788999999999999877876322122015566065666889999999987410576775207775201477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 89999999999999999999999984483334421221123033331023566510136760102101754433467754
Q gi|254780855|r 167 PELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~ 246 (396)
-..+.++.++.+.......+..++++.++.+..+..++|......+..++.+|+..++||+.+|.|+..||+.|+..++.
T Consensus 227 lG~~ddi~~f~~~F~~rldE~e~~~T~NrIw~~R~~~iGiv~aeeAlnwGfSG~mlRgsGi~wDlRk~~pYd~yd~~efd 306 (452)
T KOG2870 227 LGLMDDIYDFCDQFAERLDELEDMLTRNRIWKQRTIDIGIVTAEEALNWGFSGVMLRGSGIKWDLRKTQPYDAYDEMEFD 306 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEHHHHHCCCCCCEEECCCCCCCHHHCCCCCCCHHHCEEC
T ss_conf 32787899999999999999999874275777640450123088864237753254168877212026865201101001
Q ss_pred CEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 00101232012211000116875899999996210357867201111230304489999756754305755577761589
Q gi|254780855|r 247 IPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPV 326 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 326 (396)
...+..++++++.+.+.++..||.++..|+++..+ .|.+.....++....+..+++.+|.+..+.+..++.+.+|+
T Consensus 307 v~vgt~GDcydRYl~R~eEMrqSl~II~Qcln~mP----~Geik~dd~k~~ppkR~~mk~~mE~lihhfk~~t~gf~vpp 382 (452)
T KOG2870 307 VPVGTKGDCYDRYLCRVEEMRQSLRIIQQCLNKMP----PGEIKVDDSKVCPPKRAEMKESMESLIHHFKLFTEGFQVPP 382 (452)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 20146755687778859999998999999983299----87620453456884426455316887650443676521598
Q ss_pred CCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 7489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 327 GEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 327 G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
|+-+-.||||.|.++.+...|++|+.++++|.+|.+.|++.++++.+...++|+..||.|.|..+..+||
T Consensus 383 g~tY~avEaPKGEfGvfLisdgS~rPyRckIrapgfahla~l~~m~k~h~lADvvaIiGt~DIvfGEvDR 452 (452)
T KOG2870 383 GATYVAVEAPKGEFGVFLISDGSGRPYRCKIRAPGFAHLAALDKMSKRHMLADVVAIIGTLDIVFGEVDR 452 (452)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7525876358871468996069999534554597247888788887754378899864221055411579
No 17
>pfam00346 Complex1_49kDa Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
Probab=100.00 E-value=4.9e-44 Score=326.01 Aligned_cols=272 Identities=63% Similarity=1.102 Sum_probs=254.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 30564189999999999997899755976476336536200078989999999999999999999999984483334421
Q gi|254780855|r 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN 201 (396)
Q Consensus 122 ~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (396)
+.|+.+.+.++++.||+++++++.++|.|.|+++++|||+..++++..++++...++...+...++.+++..++.+..+.
T Consensus 1 dlG~~T~fm~~f~~RE~ildl~E~itG~R~~~~~~~iGGv~~Dl~~~~~~~i~~~l~~~~~~~~~~~~l~~~n~i~~~R~ 80 (272)
T pfam00346 1 DVGALTPFFWIFEEREKLMDFYEAVSGARMHAAYFRIGGVAQDLPYGWMDDLLEFCDYFLKRVDEYEELLTQNRIFKLRL 80 (272)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 97723098999999999999999987554123987768798689978999999999999999999999863596488752
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 22112303333102356651013676010210175443346775400101232012211000116875899999996210
Q gi|254780855|r 202 VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281 (396)
Q Consensus 202 ~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 281 (396)
.++|.++.+.+..++.+||.+|+||+++|.|+..||..|+..++...+...+|++++...+..+..||.++.+|++++.+
T Consensus 81 ~gvGvls~e~A~~~g~tGP~~RASGv~~D~R~~~PY~~Y~~ldf~v~~~~~GD~~aR~~VR~~Ei~eS~~IIrq~l~~lp 160 (272)
T pfam00346 81 RGVGFVTAEDALNWGLSGVMLRGSGIQWDLRKSQPYECYDQFDFDVPVGFNGDCYDRYLLRVEEMRQSLRIIQQCLNKMP 160 (272)
T ss_pred CCCCEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45418889999985786500002688862133477746300561353246776788788479999999999999997588
Q ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 35786720111123030448999975675430575557776158974899998895117999998799808899983587
Q gi|254780855|r 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361 (396)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT 361 (396)
..+... ............+....++.+..+.+..++...+|+|++++.+|||||.++||+.+|+++++++++|++||
T Consensus 161 ~gp~~~---~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~P~Ge~~~~vE~pRGE~~~~~~sdg~~~p~R~kiR~PS 237 (272)
T pfam00346 161 GGPGEK---VEAFKLTPPKRSEMKDFIETLIHHFKLYSPGFKVPAGESYAAVEAPKGELGVYLVSDGSTFPYRWKIRAPG 237 (272)
T ss_pred CCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCC
T ss_conf 999632---44555678856666441898876310145665579973999985598128999998899957889997988
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 56868899997088057599989760912055359
Q gi|254780855|r 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 362 ~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
+.|+++++.+++|+.|+|++.++.|||||++|+||
T Consensus 238 f~N~~~l~~~~~G~~iaD~p~i~~S~d~~~~~~DR 272 (272)
T pfam00346 238 FAHLQILDHLSRGHLLADLVAILGSIDIVFGEVDR 272 (272)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 26999999997799440799997070767668789
No 18
>KOG3078 consensus
Probab=83.21 E-value=1.5 Score=23.01 Aligned_cols=119 Identities=13% Similarity=-0.019 Sum_probs=84.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 788987409898785544312123448889999999999983885788899999999999999988999874334-----
Q gi|254780855|r 47 RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM----- 121 (396)
Q Consensus 47 RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~----- 121 (396)
|++-.++.|.+..---.+++||+=--++.|..+.-..-+... ..++.++.+-..+..+..+-||+.+. .+..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia--~~telg~~~~~~~~~g~lvpDeiv~~-~l~~~l~~~ 90 (235)
T KOG3078 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIA--SGTELGKEAKEAIDKGKLVPDEVVVR-LLEKRLENP 90 (235)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCCHHHHHH-HHHHHCCCC
T ss_conf 464799971899997743779998447750034788999985--15817899999997327675999999-998602564
Q ss_pred -------HHCCCHHHHHHHHHHHH-------------HHHHHHHHCCCCCCCCEEEECCCCCCCCHH
Q ss_conf -------30564189999999999-------------997899755976476336536200078989
Q gi|254780855|r 122 -------DVGALTPPLWGFEEREK-------------LMVFYERASGSRMHAAYFRPGGVHQDIPPE 168 (396)
Q Consensus 122 -------~~~~~~~~~~~~~~r~~-------------~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~ 168 (396)
.++++.....+.++.+. -..+++.+.|+++||.+...=.....|+..
T Consensus 91 ~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~ 157 (235)
T KOG3078 91 RCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKV 157 (235)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCC
T ss_conf 2225600478886348899999706883337884388899999975023357533200100269765
No 19
>PRK12449 acyl carrier protein; Provisional
Probab=78.51 E-value=2.3 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999983885788-8999999999999999889
Q gi|254780855|r 77 EHAYALAVEKLLGIEIPI-RGQLIRVLYSEIGRILSHL 113 (396)
Q Consensus 77 ~~Aa~~AiE~a~gi~vp~-~a~llR~Ll~~~e~i~sH~ 113 (396)
.+-.+.|+|+.||+++|. .+..++.+-...+||.+|+
T Consensus 42 ~vElvm~lEdeFgi~IpDe~ae~i~Tv~d~vdYI~~kl 79 (80)
T PRK12449 42 LVEFIINVEDEFHLAIPDEDVEDMVFMGDLLDYLVQRL 79 (80)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999999999799788899987787999999999864
No 20
>pfam10437 Lip_prot_lig_C Bacterial lipoate protein ligase C-terminus. This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C-terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with the domain BPL_LipA_LipB pfam03099, further upstream. This C-terminal domain is more stable than the BPL_LipA_LipB and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues.
Probab=76.39 E-value=5.4 Score=19.07 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=21.1
Q ss_pred CCEEEEEEEECCEEEEEEEEECCCH----HHHHHHHCCCCHH
Q ss_conf 7559999983998999998804115----7889874098987
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGLLH----RGTEKLIETKTFL 59 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~~~----RGfE~il~Gr~~~ 59 (396)
|.+.+.+.|++|+|.++.+..-.+. ..+|..|+|.++.
T Consensus 16 G~ve~~l~V~~G~I~~iki~gDf~~~~~i~~le~~L~G~~y~ 57 (85)
T pfam10437 16 GTIEVHLNVEKGKIKDIKIFGDFLGPGDLEELEEKLIGVKYD 57 (85)
T ss_pred CEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 479999997389998999984569835499999986799869
No 21
>pfam03450 CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain.
Probab=75.62 E-value=5.6 Score=18.94 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=19.0
Q ss_pred EEEEE-CCEEEEEEEEECCCH------HHHHHHHCCCCHHH
Q ss_conf 99983-998999998804115------78898740989878
Q gi|254780855|r 27 ILELD-GEIVERVDPHIGLLH------RGTEKLIETKTFLQ 60 (396)
Q Consensus 27 ~~~v~-~~~V~~a~~~~g~~~------RGfE~il~Gr~~~d 60 (396)
.+.++ |++|.++++..|.+- .-.|..|+|+++.+
T Consensus 21 ~~~~~~~g~i~~~ria~Ggv~~~p~r~~~~E~~L~Gk~~~~ 61 (103)
T pfam03450 21 RVTLDEDGTVTDARIAFGGVAPTPLRATAAEAALVGKPLDE 61 (103)
T ss_pred EEEECCCCEEEEEEEEEECCCCCEEEHHHHHHHHCCCCCCH
T ss_conf 99985998098999987547674576899999871898423
No 22
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=75.49 E-value=5.7 Score=18.91 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=31.8
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHHH
Q ss_conf 55999998399899999880411578----------898740989878554431
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYFD 66 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it~ 66 (396)
-+++.+.+++++|+++.+.. +| +=.+++||+..+|..|++
T Consensus 35 ~i~i~l~i~~~~I~di~F~~----~GCais~AsaS~~~e~i~Gk~l~ea~~i~~ 84 (121)
T TIGR03419 35 IMKIFLKVEDDIIKDVKFKT----FGCGAAIASSSMATEMIKGKTLEEAWELTN 84 (121)
T ss_pred EEEEEEEECCCCEEEEEEEE----ECCHHHHHHHHHHHHHHCCCCHHHHHHCCH
T ss_conf 89999998899678899996----555889999999999984994999986354
No 23
>CHL00124 acpP acyl carrier protein; Validated
Probab=74.87 E-value=3.7 Score=20.22 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999983885788-89999999999999998899
Q gi|254780855|r 77 EHAYALAVEKLLGIEIPI-RGQLIRVLYSEIGRILSHLL 114 (396)
Q Consensus 77 ~~Aa~~AiE~a~gi~vp~-~a~llR~Ll~~~e~i~sH~~ 114 (396)
.+--+.++|+.|||++|. .+..++.+-....+|++|+-
T Consensus 42 ~vElvm~lE~~F~IeIpded~~~l~TV~d~v~yI~~~l~ 80 (84)
T CHL00124 42 TVELVMAIEEEFDIEIPDEAAEKIATVQEAVDFISQKIN 80 (84)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999998997788999877989999999999886
No 24
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=66.28 E-value=8.9 Score=17.55 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=6.8
Q ss_pred CCCCCHHHHHHHHCCCC
Q ss_conf 87568688999970880
Q gi|254780855|r 360 PGYAHLQAMEFLCKGHQ 376 (396)
Q Consensus 360 PT~~N~~~~e~al~G~~ 376 (396)
|-|-=.+|+.++|..||
T Consensus 292 pntlvQGAl~~iL~~TP 308 (415)
T TIGR01264 292 PNTLVQGALPEILLKTP 308 (415)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 20114421798864065
No 25
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=65.59 E-value=2 Score=22.06 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=5.2
Q ss_pred HHCCCCCCCCEEEECC
Q ss_conf 7559764763365362
Q gi|254780855|r 145 RASGSRMHAAYFRPGG 160 (396)
Q Consensus 145 ~~gG~~~Hp~~~vpGG 160 (396)
+|-|.-|-.+..-=||
T Consensus 571 RLIGsPPGYVGfEqGG 586 (774)
T TIGR02639 571 RLIGSPPGYVGFEQGG 586 (774)
T ss_pred HHHCCCCCCCCCCCCC
T ss_conf 7416888851316777
No 26
>KOG1748 consensus
Probab=64.96 E-value=4.6 Score=19.58 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998388578-88999999999999999889
Q gi|254780855|r 81 ALAVEKLLGIEIP-IRGQLIRVLYSEIGRILSHL 113 (396)
Q Consensus 81 ~~AiE~a~gi~vp-~~a~llR~Ll~~~e~i~sH~ 113 (396)
+.|+|+=||+++| ..|..+...-..+++|.+|.
T Consensus 94 VMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748 94 VMALEEEFGIEIPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCC
T ss_conf 0100787597267414566279999999998263
No 27
>PRK10819 transport protein TonB; Provisional
Probab=58.62 E-value=12 Score=16.63 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=21.8
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCCH
Q ss_conf 1179999987998088999835875686
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAHL 365 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N~ 365 (396)
|.....+.++.+|++.+.+|+.-+--|.
T Consensus 178 G~V~v~fdV~~~G~V~nv~Vv~s~p~~~ 205 (243)
T PRK10819 178 GQVKVKFDVDEDGRVDNVQILSAQPANM 205 (243)
T ss_pred CEEEEEEEECCCCCEEEEEEEECCCCCH
T ss_conf 4799999989999884569993689453
No 28
>pfam05910 DUF868 Plant protein of unknown function (DUF868). This family consists of several hypothetical proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=56.25 E-value=7.6 Score=18.03 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=10.6
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCH
Q ss_conf 9999987998088999835875686
Q gi|254780855|r 341 GVYLISDGGNKPYRCKIRAPGYAHL 365 (396)
Q Consensus 341 ~H~~~~~~~g~i~~~~ii~PT~~N~ 365 (396)
.-|+.+|+. ++-+.+= =.||+
T Consensus 174 ~l~v~VDgk-~v~~Vkr---L~WkF 194 (272)
T pfam05910 174 ELWISVDGK-VVVQVKR---LQWKF 194 (272)
T ss_pred EEEEEECCE-EEEEEEE---EEEEC
T ss_conf 799999999-9999987---23313
No 29
>PRK00982 acpP acyl carrier protein; Provisional
Probab=52.92 E-value=13 Score=16.32 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 23448889999999999983885788-8999999999999999889
Q gi|254780855|r 69 DYVAPMNQEHAYALAVEKLLGIEIPI-RGQLIRVLYSEIGRILSHL 113 (396)
Q Consensus 69 CGIC~~aH~~Aa~~AiE~a~gi~vp~-~a~llR~Ll~~~e~i~sH~ 113 (396)
.|+-|.. .+--+.++|+.||+++|. ....++.+--..++|+.|.
T Consensus 33 Lg~DSLd-~velv~~lEe~F~i~Ipde~~~~~~TV~dlv~yI~~~~ 77 (78)
T PRK00982 33 LGADSLD-TVELVMALEEEFGVEIPDEEAEKIKTVGDAVDYIEEHQ 77 (78)
T ss_pred CCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCC
T ss_conf 4997899-99999999999699268999974898999999998832
No 30
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family; InterPro: IPR011341 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This family represents SufU, NifU-like proteins that are part of the SUF system, one of the two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.; GO: 0005506 iron ion binding, 0005515 protein binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly.
Probab=52.87 E-value=15 Score=16.00 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=39.3
Q ss_pred EEEEEEEECC-EEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5999998399-899999880411578898740989878554431212344888999999999998388578889999999
Q gi|254780855|r 24 LRLILELDGE-IVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102 (396)
Q Consensus 24 l~~~~~v~~~-~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~L 102 (396)
+.+.|.+||+ +|+|+.+. |. =|++|.+=||.. +|...|-++.+.-.++...
T Consensus 40 I~L~~k~~~~~~i~D~~F~-G~--------------------------GCsIS~ASaSmM-~e~i~Gk~~~eA~~~~~~F 91 (139)
T TIGR01994 40 ITLTVKLEGDRVIEDIAFE-GE--------------------------GCSISQASASMM-TELIKGKTVEEALKLVEAF 91 (139)
T ss_pred EEEEEEECCCCEEEEEEEE-CC--------------------------CCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHH
T ss_conf 7899987498888888873-57--------------------------670899889999-9974598988999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780855|r 103 Y 103 (396)
Q Consensus 103 l 103 (396)
-
T Consensus 92 ~ 92 (139)
T TIGR01994 92 S 92 (139)
T ss_pred H
T ss_conf 9
No 31
>PRK08172 acyl carrier protein; Validated
Probab=48.63 E-value=17 Score=15.55 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983885788-8999999999999999889
Q gi|254780855|r 79 AYALAVEKLLGIEIPI-RGQLIRVLYSEIGRILSHL 113 (396)
Q Consensus 79 Aa~~AiE~a~gi~vp~-~a~llR~Ll~~~e~i~sH~ 113 (396)
--+.|+|+.|||++|. .+..++..--...+|..|+
T Consensus 36 elvMalEeeF~ieIpded~e~i~TV~Dvv~yie~~l 71 (75)
T PRK08172 36 DIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSL 71 (75)
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999889788889975661999999999987
No 32
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=47.76 E-value=3.8 Score=20.12 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCC
Q ss_conf 89878554431212344888999------9999999983885
Q gi|254780855|r 56 KTFLQAVPYFDRLDYVAPMNQEH------AYALAVEKLLGIE 91 (396)
Q Consensus 56 r~~~da~~it~RICGIC~~aH~~------Aa~~AiE~a~gi~ 91 (396)
.+|+-=..++++||+|.|+||.- +.+.|||+|-.|-
T Consensus 73 ~pYe~Yv~lAEkln~iaPgSg~kk~~ffnsGAEAVENAVKIA 114 (427)
T TIGR00700 73 VPYESYVELAEKLNAIAPGSGEKKAVFFNSGAEAVENAVKIA 114 (427)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCHHEEEECCCHHHHHHHHHHH
T ss_conf 216258999999715788973100021115437888899999
No 33
>pfam02746 MR_MLE_N Mandelate racemase / muconate lactonizing enzyme, N-terminal domain. SCOP reports fold similarity with enolase N-terminal domain.
Probab=44.21 E-value=20 Score=15.10 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEC---------CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1599840686866677559999983998999998804---------1157889874098987855443121234488899
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIG---------LLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQE 77 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g---------~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~ 77 (396)
|-|++..|.++ .. ..+=++++.+||.+=--++... .+.+.|-..|.|+++.+.-.+.+++.-.+...
T Consensus 14 rP~~~S~g~~~-~~-~~vlV~l~t~dGi~G~Ge~~~~~~~~~~~~~~i~~~l~p~lig~~~~~~~~~~~~~~~~~~~~-- 89 (117)
T pfam02746 14 RPIQMAFGTVQ-QQ-SLVIVRIETSEGVVGIGEATSVGGRAETIKAILDDHLAPLLIGRDAANISDLWQLMYRAALGN-- 89 (117)
T ss_pred CCEEEECEEEE-EE-EEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH--
T ss_conf 99898488998-52-599999998999899988847889779999999999999975899659999999976635541--
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999983
Q gi|254780855|r 78 HAYALAVEKLL 88 (396)
Q Consensus 78 ~Aa~~AiE~a~ 88 (396)
.++.-|||.|+
T Consensus 90 ~~A~aaiD~Al 100 (117)
T pfam02746 90 MSAKAAIDMAL 100 (117)
T ss_pred HHHHHHHHHHH
T ss_conf 88999999999
No 34
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=43.38 E-value=21 Score=15.01 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=31.7
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCCC--HHHHHHHHCCCCCC
Q ss_conf 95117999998799808899983587568--68899997088057
Q gi|254780855|r 336 PKGEFGVYLISDGGNKPYRCKIRAPGYAH--LQAMEFLCKGHQLA 378 (396)
Q Consensus 336 PRG~L~H~~~~~~~g~i~~~~ii~PT~~N--~~~~e~al~G~~i~ 378 (396)
+-|.+=-++.++ +|+|++++|-....-. +..+|++|+|.+-.
T Consensus 261 ~~G~ve~~l~V~-~G~I~~~ki~gDff~~~~i~~le~~L~G~~y~ 304 (338)
T PRK03822 261 TWGGVELHFDVE-KGHITRAQIFTDSLNPAPLEALAGRLQGCLYR 304 (338)
T ss_pred CCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 673699999982-89898999986689942599999985699778
No 35
>pfam01592 NifU_N NifU-like N terminal domain. This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters.
Probab=40.93 E-value=22 Score=14.76 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=31.2
Q ss_pred CCCCCCCCCCEEEEEEEEC--CEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHHH
Q ss_conf 6868666775599999839--9899999880411578----------898740989878554431
Q gi|254780855|r 14 GPQHPAAHGVLRLILELDG--EIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYFD 66 (396)
Q Consensus 14 gp~~~~~~g~l~~~~~v~~--~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it~ 66 (396)
.|..+. .+++.+.|++ ++|.++.+.. +| +=.+++|++..++..|+.
T Consensus 30 np~CGD---~i~i~l~i~~~~~~I~di~F~~----~GCais~AsaS~l~e~i~Gk~~~ea~~i~~ 87 (126)
T pfam01592 30 SPACGD---AMRLQIKVDEDTDRIEDAKFKT----FGCGSAIASSSALTELVKGKTLDEALKITN 87 (126)
T ss_pred CCCCCC---EEEEEEEEECCCCEEEEEEEEE----ECCHHHHHHHHHHHHHHCCCCHHHHHHCCH
T ss_conf 999774---8999999707999499989986----376888999999999986993999986169
No 36
>pfam00948 Flavi_NS1 Flavivirus non-structural Protein NS1. The NS1 protein is well conserved amongst the flaviviruses. It contains 12 cysteines, and undergoes glycosylation in a similar manner to other NS proteins. Mutational analysis has strongly implied a role for NS1 in the early stages of RNA replication.
Probab=40.41 E-value=12 Score=16.67 Aligned_cols=31 Identities=3% Similarity=-0.026 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHH
Q ss_conf 1212344888999999-999998388578889
Q gi|254780855|r 66 DRLDYVAPMNQEHAYA-LAVEKLLGIEIPIRG 96 (396)
Q Consensus 66 ~RICGIC~~aH~~Aa~-~AiE~a~gi~vp~~a 96 (396)
.-+|||||++.+.++. +++++.++.-..+|.
T Consensus 51 ~G~CGi~s~~rlE~~MW~si~~ElN~il~en~ 82 (355)
T pfam00948 51 EGVCGIRSVTRLEHAMWRSIADELNAILSENE 82 (355)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89314211549999999998999987642327
No 37
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=39.66 E-value=23 Score=14.63 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=35.1
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCC-HHHHHHHHCCCCCCHHHHHHH---HCCCCCCCCCC
Q ss_conf 117999998799808899983587568-688999970880575999897---60912055359
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAH-LQAMEFLCKGHQLADVSAILG---SLDIVFGEVDR 396 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N-~~~~e~al~G~~i~D~~~iir---SfDpC~sC~dr 396 (396)
|.=--.+.+ +||+|..++++--+--- .--+.+-|+|.++.|.+..+. ..=||.+-.+|
T Consensus 128 G~P~~ev~v-~~~~I~~V~VlR~aPCGsT~~vAk~l~G~~~~d~~~~~g~~~q~YPC~Asm~~ 189 (215)
T pfam02593 128 GRPELEVEV-EDGKIKDVRVLRGAPCGSTWFVAKELRGKDVDEAEEKAGLAHQHYPCRASMER 189 (215)
T ss_pred CCCEEEEEE-CCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 996699997-49949999898478986399999981696250667787788603875466332
No 38
>KOG0821 consensus
Probab=37.84 E-value=15 Score=16.01 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 9998743343056418999999999999789975597647633653620007898999999
Q gi|254780855|r 113 LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173 (396)
Q Consensus 113 ~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~ 173 (396)
+.|+|-|-...-...+|.+-+++..++.+-...+.-.|.--...-|||+|+.+.+....++
T Consensus 16 ~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL 76 (326)
T KOG0821 16 IIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARL 76 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHCCHHHE
T ss_conf 9999999999988676765537889999861655524058846998720489886252352
No 39
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=37.48 E-value=16 Score=15.75 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=26.7
Q ss_pred CCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCC
Q ss_conf 6677559999983998999998804115788987409
Q gi|254780855|r 19 AAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55 (396)
Q Consensus 19 ~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~G 55 (396)
.+.|..+++|.++|+.++-|+++ |-|-+-.=+|+.|
T Consensus 15 e~L~~~~f~v~~eng~~~~ahI~-GKmr~~~i~I~~G 50 (75)
T COG0361 15 EMLPNGRFRVELENGHERLAHIS-GKMRKNRIRILPG 50 (75)
T ss_pred EECCCCEEEEEECCCCEEEEECC-CCCCEEEEEECCC
T ss_conf 97389789999469969998825-8744004885799
No 40
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.34 E-value=27 Score=14.18 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCEEEEEECCCC-------CCCCCC---EEEEEEEECCEEEEEEEEE-----CCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 615998406868-------666775---5999998399899999880-----411578898740989878554431212
Q gi|254780855|r 6 SRSFTINFGPQH-------PAAHGV---LRLILELDGEIVERVDPHI-----GLLHRGTEKLIETKTFLQAVPYFDRLD 69 (396)
Q Consensus 6 ~~~~~~~~gp~~-------~~~~g~---l~~~~~v~~~~V~~a~~~~-----g~~~RGfE~il~Gr~~~da~~it~RIC 69 (396)
...|.+|+=|.+ ++..+. .=|+++.|+|.+=-..... -.+-+-|..+|.|+||.+.-.+-+++.
T Consensus 7 ~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~lV~i~TD~Gi~G~g~~~~~~~~~~~i~~~lap~liG~dp~~~e~~~~~m~ 85 (368)
T cd03329 7 VTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRPVTDPALVDRFLKKVLIGQDPLDRERLWQDLW 85 (368)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999976887567666426887635899999999689998999668747789999999899868998314999999999
No 41
>pfam03544 TonB Gram-negative bacterial tonB protein.
Probab=35.24 E-value=27 Score=14.17 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=18.2
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 1179999987998088999835875
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGY 362 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~ 362 (396)
|...-.+.++++|+|.+++|+.+|.
T Consensus 16 G~v~v~~~I~~~G~v~~~~v~~ss~ 40 (79)
T pfam03544 16 GTVTVRFTIDPDGSVKDVKVVKSSG 40 (79)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCC
T ss_conf 6999999997999999999995379
No 42
>PRK06508 acyl carrier protein; Provisional
Probab=34.87 E-value=23 Score=14.72 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCCCCHH
Q ss_conf 99999999838857888
Q gi|254780855|r 79 AYALAVEKLLGIEIPIR 95 (396)
Q Consensus 79 Aa~~AiE~a~gi~vp~~ 95 (396)
=-+.|+|+.|||++|..
T Consensus 42 elVmalEeeFgIeIP~e 58 (93)
T PRK06508 42 DIVFAIDKAFGIKLPLE 58 (93)
T ss_pred HHHHHHHHHHCCCCCHH
T ss_conf 99999999869736478
No 43
>TIGR01352 tonB_Cterm TonB family C-terminal domain; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria . Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins . The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores . An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin . To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane. ; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space.
Probab=34.60 E-value=28 Score=14.10 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=12.8
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 117999998799808899983587568
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAH 364 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N 364 (396)
|.-.--+.++.+|+|++.+|.-+|-..
T Consensus 14 G~V~v~~~v~~~G~v~~~~v~~Ssg~~ 40 (81)
T TIGR01352 14 GTVVVRFTVDASGRVTSVRVLKSSGNR 40 (81)
T ss_pred CEEEEEEEECCCCCEEEEEEECCCCCH
T ss_conf 568999986899835578883057987
No 44
>PRK11325 scaffold protein; Provisional
Probab=34.31 E-value=28 Score=14.07 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=27.4
Q ss_pred CEEEEEEEECC-EEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHH
Q ss_conf 55999998399-899999880411578----------89874098987855443
Q gi|254780855|r 23 VLRLILELDGE-IVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYF 65 (396)
Q Consensus 23 ~l~~~~~v~~~-~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it 65 (396)
.+++.+.|+++ +|.|+.+.. .| +=.+++||+..+|..|+
T Consensus 40 ~i~i~l~v~~~~~I~d~~F~~----~GC~is~AsaS~~te~~~Gkt~~ea~~i~ 89 (127)
T PRK11325 40 VMKLQIKVNDEGIIEDAKFKT----YGCGSAIASSSLVTEWVKGKTLDEALAIK 89 (127)
T ss_pred EEEEEEEECCCCEEEEEEEEE----CCCHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 899999987998498888971----28589999999999998399799998555
No 45
>pfam06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N). This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with pfam01676 (located in the C-terminal region of the protein).
Probab=33.97 E-value=29 Score=14.03 Aligned_cols=69 Identities=19% Similarity=0.016 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHH---------------HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 99988999874334---------------305641899999999999978997559764763365362000789899999
Q gi|254780855|r 108 RILSHLLNVTTQAM---------------DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172 (396)
Q Consensus 108 ~i~sH~~h~~~l~~---------------~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~ 172 (396)
-+|||+-|++.|.. .+|....-..+...-++..+.+...+..++-.+.-+-=.+-++-.++..++
T Consensus 40 GVHShidHl~al~~~a~~~gv~~v~lH~f~DGRDt~P~Sa~~yl~~l~~~l~~~~~~~IASi~GRyyAMDRD~rWeRv~~ 119 (223)
T pfam06415 40 GVHSHIDHLFALLKLAKERGVKKVYIHAFTDGRDVAPKSAKGFLEELEAFLKELGVGRIATISGRYYAMDRDKRWERVEK 119 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCHHHHHH
T ss_conf 76324799999999999718870899986068888836799999999997654058169887451166325245278999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780855|r 173 IGCW 176 (396)
Q Consensus 173 ~~~~ 176 (396)
....
T Consensus 120 ay~~ 123 (223)
T pfam06415 120 AYDA 123 (223)
T ss_pred HHHH
T ss_conf 9999
No 46
>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase; InterPro: IPR011962 Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13 from EC)/dUTP diphosphatase (3.6.1.23 from EC). For additional information please see .; GO: 0008829 dCTP deaminase activity, 0006229 dUTP biosynthetic process.
Probab=31.89 E-value=28 Score=14.09 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=13.5
Q ss_pred EEEE--CCCCCCCCCCEEEEEEEECC
Q ss_conf 9840--68686667755999998399
Q gi|254780855|r 10 TINF--GPQHPAAHGVLRLILELDGE 33 (396)
Q Consensus 10 ~~~~--gp~~~~~~g~l~~~~~v~~~ 33 (396)
.++. |.+.||++|++.+|+.=-+.
T Consensus 126 ~~~~TAg~iDPGf~G~ITLEl~N~~~ 151 (198)
T TIGR02274 126 FIHVTAGWIDPGFEGNITLELFNAGK 151 (198)
T ss_pred ECCCCCCEECCCCCCEEEEEEECCCC
T ss_conf 40662117868987649999876878
No 47
>pfam01599 Ribosomal_S27 Ribosomal protein S27a. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins.
Probab=31.73 E-value=31 Score=13.78 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.2
Q ss_pred EEEEEECCCCCEEEEEEECCC
Q ss_conf 999998799808899983587
Q gi|254780855|r 341 GVYLISDGGNKPYRCKIRAPG 361 (396)
Q Consensus 341 ~H~~~~~~~g~i~~~~ii~PT 361 (396)
.-+|++|+||+|.+-+---|+
T Consensus 3 LkyYkVd~~GKv~Rlr~eCp~ 23 (47)
T pfam01599 3 LKYYKVDGEGKVVRLRRECPN 23 (47)
T ss_pred CEEEEECCCCEEEEECCCCCC
T ss_conf 216888799739885055989
No 48
>pfam04268 SoxG Sarcosine oxidase, gamma subunit family. Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyses the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.
Probab=31.26 E-value=22 Score=14.78 Aligned_cols=11 Identities=0% Similarity=-0.266 Sum_probs=5.5
Q ss_pred EEEEECCCCCC
Q ss_conf 99983587568
Q gi|254780855|r 354 RCKIRAPGYAH 364 (396)
Q Consensus 354 ~~~ii~PT~~N 364 (396)
.|+|+++.+.-
T Consensus 125 ~f~l~~~RSfa 135 (148)
T pfam04268 125 SFELLVFRSFA 135 (148)
T ss_pred EEEEEEECCHH
T ss_conf 29999978579
No 49
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=30.45 E-value=32 Score=13.64 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=15.6
Q ss_pred CEEEEEEEECCEEEEEEEEE
Q ss_conf 55999998399899999880
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHI 42 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~ 42 (396)
-+++.+.+++++|.++.+..
T Consensus 36 ~i~l~l~i~~~~I~~i~f~~ 55 (123)
T cd06664 36 EITLYLKVEDGRITDAKFQG 55 (123)
T ss_pred EEEEEEEECCCEEEEEEEEE
T ss_conf 79999998089577889995
No 50
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=29.97 E-value=33 Score=13.59 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=25.2
Q ss_pred CCEEEEEEEECCCCCEEEEEEECCCCCCH
Q ss_conf 51179999987998088999835875686
Q gi|254780855|r 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL 365 (396)
Q Consensus 337 RG~L~H~~~~~~~g~i~~~~ii~PT~~N~ 365 (396)
.|....-+.+|.+|.|.+++|+..|-.+.
T Consensus 179 ~G~V~V~f~i~~~G~v~~v~v~~SSg~~~ 207 (244)
T COG0810 179 EGTVKVKFTIDPDGNVTNVRVLKSSGSPA 207 (244)
T ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCHH
T ss_conf 40699999989999784578862389678
No 51
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=28.66 E-value=35 Score=13.44 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=34.6
Q ss_pred EEEEECCCCCEEEEEEE----CCCCCCHHHHHHHHCCCCCCHH------HHHHHHCCC
Q ss_conf 99998799808899983----5875686889999708805759------998976091
Q gi|254780855|r 342 VYLISDGGNKPYRCKIR----APGYAHLQAMEFLCKGHQLADV------SAILGSLDI 389 (396)
Q Consensus 342 H~~~~~~~g~i~~~~ii----~PT~~N~~~~e~al~G~~i~D~------~~iirSfDp 389 (396)
-.+..++||+|..+.|- .|+.+-+...|++|.|.++++- +.+...++|
T Consensus 186 ~~~~~~~~~~i~~~ria~Ggv~~~p~r~~~~E~~L~G~~~~~~~i~~a~~~~~~~~~p 243 (264)
T TIGR03199 186 GRFLLDGSQTIKEIRLAVGGADITPRRLLDSEAKLMAPPWDPHLLAELYKTIIQELPF 243 (264)
T ss_pred EEEEEECCCCEEEEEEEEECCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8999907992999999987898813449999998759999999999999999757999
No 52
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.48 E-value=35 Score=13.41 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=31.0
Q ss_pred EEEEEE-CCCCCEEEEEEECCCCCC--------HHHHHHHHCCCCCCHH
Q ss_conf 999998-799808899983587568--------6889999708805759
Q gi|254780855|r 341 GVYLIS-DGGNKPYRCKIRAPGYAH--------LQAMEFLCKGHQLADV 380 (396)
Q Consensus 341 ~H~~~~-~~~g~i~~~~ii~PT~~N--------~~~~e~al~G~~i~D~ 380 (396)
+-|+++ +++|....|+|+-+.-.+ .+|+..+|.|..+.|.
T Consensus 98 GatVt~~~e~g~~~t~~IVG~dEaD~~~g~IS~~SPlaraLlgk~vGD~ 146 (160)
T PRK06342 98 GSTVTFSRDDGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDV 146 (160)
T ss_pred EEEEEEEECCCCEEEEEEECHHHCCCCCCEEECCCHHHHHHHCCCCCCE
T ss_conf 3599999289999999996834447358967535989999838999998
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=28.06 E-value=36 Score=13.37 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=33.9
Q ss_pred EEEEECCCCCEEEEEE----ECCCCCCHHHHHHHHCCCCCCH--HHHHHHH
Q ss_conf 9999879980889998----3587568688999970880575--9998976
Q gi|254780855|r 342 VYLISDGGNKPYRCKI----RAPGYAHLQAMEFLCKGHQLAD--VSAILGS 386 (396)
Q Consensus 342 H~~~~~~~g~i~~~~i----i~PT~~N~~~~e~al~G~~i~D--~~~iirS 386 (396)
-.+++|++|+|...+| -+||.==.+..|++|.|.+++. ++....+
T Consensus 430 F~~~ld~~~~V~~~riAFGGMAATPKRA~~~EaaL~G~~W~~~~~~~A~~a 480 (515)
T TIGR02963 430 FNIELDAGGVVAEIRIAFGGMAATPKRAAAVEAALLGKPWDEATVEAAMAA 480 (515)
T ss_pred EEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 387864788351364403678751156999999853885337999999999
No 54
>PRK05434 phosphoglyceromutase; Provisional
Probab=25.94 E-value=39 Score=13.11 Aligned_cols=69 Identities=19% Similarity=0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHH---------------HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 9998899987433---------------4305641899999999999978997559764763365362000789899999
Q gi|254780855|r 108 RILSHLLNVTTQA---------------MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVED 172 (396)
Q Consensus 108 ~i~sH~~h~~~l~---------------~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~ 172 (396)
-+|||+-|++.+. ..+|.+..-..+...-++..+.+...+..++-.+.-+-=.+-++-.++..++
T Consensus 122 GVHSH~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~Sa~~yl~~le~~l~~~~~g~IASi~GRyyAMDRD~rWeRv~~ 201 (511)
T PRK05434 122 GVHSHIDHLFALLELAAKEGVKKVYLHAFLDGRDTPPKSALGYLEELEAKLAELGVGRIASVSGRYYAMDRDKRWDRVEK 201 (511)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCHHHHHH
T ss_conf 43133789999999999708884899985168888842589999999998886188339997354131166666889999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780855|r 173 IGCW 176 (396)
Q Consensus 173 ~~~~ 176 (396)
..+.
T Consensus 202 Ay~a 205 (511)
T PRK05434 202 AYDA 205 (511)
T ss_pred HHHH
T ss_conf 9999
No 55
>KOG2276 consensus
Probab=25.64 E-value=39 Score=13.08 Aligned_cols=18 Identities=17% Similarity=-0.092 Sum_probs=8.1
Q ss_pred EEEEEECCCCEEEEEEEE
Q ss_conf 899998895117999998
Q gi|254780855|r 329 VYAAVEAPKGEFGVYLIS 346 (396)
Q Consensus 329 GvG~vEAPRG~L~H~~~~ 346 (396)
|..++=-|=|+.-.-..+
T Consensus 429 ~~~V~llP~G~~dD~aHs 446 (473)
T KOG2276 429 GKSVLLLPYGASDDGAHS 446 (473)
T ss_pred CCCEEEECCCCCCCCHHH
T ss_conf 997588235645651022
No 56
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=25.46 E-value=19 Score=15.27 Aligned_cols=25 Identities=20% Similarity=-0.100 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5544312123448889999999999
Q gi|254780855|r 61 AVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 61 a~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+-.---+++|||+.++.+|.+--+|
T Consensus 104 ~~~~G~~l~gictGaf~LA~aGLLd 128 (328)
T COG4977 104 AARRGARLGGLCTGAFVLAEAGLLD 128 (328)
T ss_pred HHHCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 9846995888608699999711537
No 57
>PRK05350 acyl carrier protein; Provisional
Probab=25.04 E-value=40 Score=13.00 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983885788-899999999999999988
Q gi|254780855|r 79 AYALAVEKLLGIEIPI-RGQLIRVLYSEIGRILSH 112 (396)
Q Consensus 79 Aa~~AiE~a~gi~vp~-~a~llR~Ll~~~e~i~sH 112 (396)
=-+-++|+.+|+++|+ ..+.+|.+--...+|++-
T Consensus 45 dLvv~le~~fG~kI~~E~~~~irTV~D~v~~I~~~ 79 (82)
T PRK05350 45 DLVVKLQELTGKKIKPEEFKSVRTVNDVVNAVEGL 79 (82)
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999978988989985776099999999998
No 58
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=23.52 E-value=43 Score=12.81 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=11.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 88987409898785544312123
Q gi|254780855|r 48 GTEKLIETKTFLQAVPYFDRLDY 70 (396)
Q Consensus 48 GfE~il~Gr~~~da~~it~RICG 70 (396)
-|...|.|++|.+.-.+-+++..
T Consensus 59 ~~~~~liG~~~~~~~~i~~~l~~ 81 (357)
T cd03316 59 LLAPLLIGRDPLDIERLWEKLYR 81 (357)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999779980439999999996
No 59
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=23.48 E-value=43 Score=12.80 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4888999999999998388578889999999999999998899987433
Q gi|254780855|r 72 APMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120 (396)
Q Consensus 72 C~~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~ 120 (396)
+......|+.+|+|. .+-+|-..+++.|.++.+.-.++|-...-....
T Consensus 24 p~iG~G~a~~~A~e~-iaRqPea~g~i~~tm~iglA~iEs~~IYalVia 71 (82)
T PRK13468 24 PALAEGRAVAAALDA-IAQQPDASGTISRTLFVGLAMIESMAIYCFVVA 71 (82)
T ss_pred CHHHHHHHHHHHHHH-HHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 235587999999999-865930102139999999999999999999999
No 60
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=22.75 E-value=44 Score=12.71 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.8
Q ss_pred CCEEEEEEEECCEEEEEEEEE
Q ss_conf 755999998399899999880
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHI 42 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~ 42 (396)
--+++.+.+++++|.|+.+..
T Consensus 41 D~i~l~lkv~~~~I~d~~F~~ 61 (150)
T COG0822 41 DVITLYLKVDNGVIEDAKFKG 61 (150)
T ss_pred CEEEEEEEECCCEEEEEEEEE
T ss_conf 547999997199899988641
No 61
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.61 E-value=43 Score=12.81 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=4.1
Q ss_pred EEEECCCCCEE
Q ss_conf 99987998088
Q gi|254780855|r 343 YLISDGGNKPY 353 (396)
Q Consensus 343 ~~~~~~~g~i~ 353 (396)
.+++++-|.++
T Consensus 249 ~~~iegiG~l~ 259 (266)
T COG0179 249 EVEIEGIGELE 259 (266)
T ss_pred EEEECCEEEEE
T ss_conf 99843502788
No 62
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=22.16 E-value=45 Score=12.63 Aligned_cols=55 Identities=16% Similarity=0.024 Sum_probs=37.7
Q ss_pred ECCCCE-------EEEEEEECCCCCEEEEEEE----CCCCCCHHHHHHHHCCCCCCHH------HHHHHHCCC
Q ss_conf 889511-------7999998799808899983----5875686889999708805759------998976091
Q gi|254780855|r 334 EAPKGE-------FGVYLISDGGNKPYRCKIR----APGYAHLQAMEFLCKGHQLADV------SAILGSLDI 389 (396)
Q Consensus 334 EAPRG~-------L~H~~~~~~~g~i~~~~ii----~PT~~N~~~~e~al~G~~i~D~------~~iirSfDp 389 (396)
.+.|-+ +.-+++.+ +|+|.+++|. .|+.+-+...|++|.|.++++- +.+...++|
T Consensus 186 ~~~R~~~d~a~v~~A~~~~~~-~~~i~~~ria~Ggv~~~p~r~~~~E~~L~g~~~~~~~i~~a~~~~~~~~~p 257 (292)
T PRK09971 186 YAMRDAMDIATIGCAVHCRLD-NGNFSDLRLAFGVAAPTPIRCQHAEQTAQNAPLNLETLEAISELALQDVAP 257 (292)
T ss_pred EEECCCCCEEEEEEEEEEEEC-CCEEEEEEEEEECCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 952464411427889999974-993999999750567862668999999659999989999999998756998
No 63
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=22.05 E-value=46 Score=12.61 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=4.4
Q ss_pred CHHHHHHHHCC
Q ss_conf 86889999708
Q gi|254780855|r 364 HLQAMEFLCKG 374 (396)
Q Consensus 364 N~~~~e~al~G 374 (396)
-++++..||.+
T Consensus 378 l~GAiGAAL~a 388 (396)
T COG1924 378 LMGAIGAALIA 388 (396)
T ss_pred HHHHHHHHHHH
T ss_conf 33388889987
No 64
>KOG3233 consensus
Probab=21.28 E-value=17 Score=15.58 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99978997559764
Q gi|254780855|r 138 KLMVFYERASGSRM 151 (396)
Q Consensus 138 ~~~~~~~~~gG~~~ 151 (396)
....+++.-||+.+
T Consensus 88 ~vy~lIe~sg~~GI 101 (297)
T KOG3233 88 LVYSLIEESGNEGI 101 (297)
T ss_pred HHHHHHHHCCCCCE
T ss_conf 99999997389835
Done!