HHsearch alignment for GI: 254780855 and conserved domain: pfam00346
>pfam00346 Complex1_49kDa Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
Probab=100.00 E-value=4.9e-44 Score=326.01 Aligned_cols=272 Identities=63% Similarity=1.102 Sum_probs=254.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 30564189999999999997899755976476336536200078989999999999999999999999984483334421
Q gi|254780855|r 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRN 201 (396)
Q Consensus 122 ~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (396)
T Consensus 1 dlG~~T~fm~~f~~RE~ildl~E~itG~R~~~~~~~iGGv~~Dl~~~~~~~i~~~l~~~~~~~~~~~~l~~~n~i~~~R~ 80 (272)
T pfam00346 1 DVGALTPFFWIFEEREKLMDFYEAVSGARMHAAYFRIGGVAQDLPYGWMDDLLEFCDYFLKRVDEYEELLTQNRIFKLRL 80 (272)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 97723098999999999999999987554123987768798689978999999999999999999999863596488752
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 22112303333102356651013676010210175443346775400101232012211000116875899999996210
Q gi|254780855|r 202 VNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281 (396)
Q Consensus 202 ~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 281 (396)
T Consensus 81 ~gvGvls~e~A~~~g~tGP~~RASGv~~D~R~~~PY~~Y~~ldf~v~~~~~GD~~aR~~VR~~Ei~eS~~IIrq~l~~lp 160 (272)
T pfam00346 81 RGVGFVTAEDALNWGLSGVMLRGSGIQWDLRKSQPYECYDQFDFDVPVGFNGDCYDRYLLRVEEMRQSLRIIQQCLNKMP 160 (272)
T ss_pred CCCCEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45418889999985786500002688862133477746300561353246776788788479999999999999997588
Q ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 35786720111123030448999975675430575557776158974899998895117999998799808899983587
Q gi|254780855|r 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361 (396)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT 361 (396)
T Consensus 161 ~gp~~~---~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~P~Ge~~~~vE~pRGE~~~~~~sdg~~~p~R~kiR~PS 237 (272)
T pfam00346 161 GGPGEK---VEAFKLTPPKRSEMKDFIETLIHHFKLYSPGFKVPAGESYAAVEAPKGELGVYLVSDGSTFPYRWKIRAPG 237 (272)
T ss_pred CCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCC
T ss_conf 999632---44555678856666441898876310145665579973999985598128999998899957889997988
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 56868899997088057599989760912055359
Q gi|254780855|r 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 362 ~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
T Consensus 238 f~N~~~l~~~~~G~~iaD~p~i~~S~d~~~~~~DR 272 (272)
T pfam00346 238 FAHLQILDHLSRGHLLADLVAILGSIDIVFGEVDR 272 (272)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 26999999997799440799997070767668789