HHsearch alignment of GI: 254780855 and MMDB domain: 3i9v_4_109-308_384-409

>3i9v_4 (4:109-308,4:384-409) NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4*
Probab=99.95  E-value=1.2e-26  Score=204.42  Aligned_cols=192  Identities=40%  Similarity=0.738  Sum_probs=188.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHH
Q ss_conf             78889999999999999998899987433430564189999999999997899755976476336536200078989999
Q gi|254780855|r   92 IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE  171 (396)
Q Consensus        92 vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~  171 (396)
                      ||++|+++|.|+.|+|||+||++++..++...|+...+.+++++|+.++++++.++|.|.|.++++|||+.+++++..++
T Consensus         1 VP~RA~~iRvil~ELeRI~sHL~~lg~~~~dvG~~t~~~~~~~~RE~il~~~e~~tG~R~~~~~~~pGGv~~Dl~~~~~~   80 (226)
T 3i9v_4            1 VPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVP   80 (226)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBSSCCCTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCCCCHHHHH
T ss_conf             88899999999999999876888998725523463276778999999999999850650222126741013579756769


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf             99999999999999999998448333442122112303333102356651013676010210175443346775400101
Q gi|254780855|r  172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK  251 (396)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~  251 (396)
                      .+...++...+...+..+.+..++.+.+++.++|..+.+.+..++.+||..++||+.+|.|+.+||..|+..++...+..
T Consensus        81 ~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~aRASGi~~D~R~~~PY~~Y~~l~f~v~v~~  160 (226)
T 3i9v_4           81 ELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGE  160 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSSGGGSCCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             99998988999999999987427401211588402354303323665543355753410023477554456677503245


Q ss_pred             CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             23201221100011687589999999621035
Q gi|254780855|r  252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK  283 (396)
Q Consensus       252 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  283 (396)
                      .+|+++++..+..+..+|..+..+++++.+..
T Consensus       161 ~GDv~aR~~vR~~Ei~eSl~li~~~l~~l~~~  192 (226)
T 3i9v_4          161 RGDVFDRMLVRIREMRESVKIIKQALERLEPG  192 (226)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             67642100234444443234567787508887