HHsearch alignment of GI: 254780855 and MMDB domain: 3i9v_4_109-308_384-409
>3i9v_4 (4:109-308,4:384-409) NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4*
Probab=99.95 E-value=1.2e-26 Score=204.42 Aligned_cols=192 Identities=40% Similarity=0.738 Sum_probs=188.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 78889999999999999998899987433430564189999999999997899755976476336536200078989999
Q gi|254780855|r 92 IPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVE 171 (396)
Q Consensus 92 vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~ 171 (396)
||++|+++|.|+.|+|||+||++++..++...|+...+.+++++|+.++++++.++|.|.|.++++|||+.+++++..++
T Consensus 1 VP~RA~~iRvil~ELeRI~sHL~~lg~~~~dvG~~t~~~~~~~~RE~il~~~e~~tG~R~~~~~~~pGGv~~Dl~~~~~~ 80 (226)
T 3i9v_4 1 VPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVP 80 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBSSCCCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEECCCCCCHHHHH
T ss_conf 88899999999999999876888998725523463276778999999999999850650222126741013579756769
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 99999999999999999998448333442122112303333102356651013676010210175443346775400101
Q gi|254780855|r 172 DIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGK 251 (396)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~ 251 (396)
.+...++...+...+..+.+..++.+.+++.++|..+.+.+..++.+||..++||+.+|.|+.+||..|+..++...+..
T Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~aRASGi~~D~R~~~PY~~Y~~l~f~v~v~~ 160 (226)
T 3i9v_4 81 ELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGE 160 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSSGGGSCCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99998988999999999987427401211588402354303323665543355753410023477554456677503245
Q ss_pred CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23201221100011687589999999621035
Q gi|254780855|r 252 HGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK 283 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (396)
.+|+++++..+..+..+|..+..+++++.+..
T Consensus 161 ~GDv~aR~~vR~~Ei~eSl~li~~~l~~l~~~ 192 (226)
T 3i9v_4 161 RGDVFDRMLVRIREMRESVKIIKQALERLEPG 192 (226)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67642100234444443234567787508887