HHsearch results for GI: 254780855 and protein with PDBid: 1e3d_B
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=100.00 E-value=0 Score=575.82 Aligned_cols=386 Identities=14% Similarity=0.111 Sum_probs=276.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+.+-.|.|.|++ ++|||+++++++|||+|++|++. +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|
T Consensus 10 ~~~~~I~IdP~t-RiEGh~~i~v~~d~g~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~it~RICGIC~~sH~lA~~~AvE 87 (542)
T 1e3d_B 10 NYTGPIVVDPLT-RIEGHLRIEVEVEGGVIKEARSC-ATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLE 87 (542)
T ss_dssp CCCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHH
T ss_pred CCCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-EECCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 886466988866-31213899999969999999993-1035389998779998898887514430086689999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf 98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396)
Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396)
+|+|++||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 88 ~a~gi~~P~~a~~lR~L~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (542)
T 1e3d_B 88 DAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLKTF 167 (542)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98099989899999999999999998999887640761035532333685789998630364224728899988777766
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--CCHHHHHH
Q ss_conf --------------------------------18999999999999789975597647633653620007--89899999
Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD--IPPELVED 172 (396)
Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~--~~~~~~~~ 172 (396)
..|.+++++|+.++++++++||+++||++++|||+++. ++++.+.+
T Consensus 168 ~~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~gG~~~h~~~~vpGGv~~~~~l~~~~l~~ 247 (542)
T 1e3d_B 168 VASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPERIKQ 247 (542)
T ss_dssp HHTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEECCCCCCHHHHHH
T ss_conf 53022476542212477632346733303577899999999999999999984888666717616770577899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEE---------EECCCCCCC-----CCCCCCCC---CCCCCCCHHH--
Q ss_conf 9999999999999999998-44833344212211---------230333310-----23566510---1367601021--
Q gi|254780855|r 173 IGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIG---------TVKLEDAWG-----WGFSGVMI---RGSGAAWDLR-- 232 (396)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g---------~~~~~~~~~-----~~~~G~~~---~~~g~~~~~r-- 232 (396)
+...+....++.+..+... .....+...+...+ .+....... +...|... ......+|..
T Consensus 248 ~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~gg~~~~~s~g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~d~~~i 327 (542)
T 1e3d_B 248 FRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKI 327 (542)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGCBCCCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHCEECCCEEEECCCCEEEECCHHHH
T ss_conf 99999999999999777799999987555775178554023325456665543011000586799567771653457860
Q ss_pred -HCCCCCCCCC-----------CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC-----------------
Q ss_conf -0175443346-----------77540010123201221100011687589999999621035-----------------
Q gi|254780855|r 233 -KSQPYECYSE-----------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK----------------- 283 (396)
Q Consensus 233 -~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----------------- 283 (396)
++.++++|.. ..+........++|.+.+.+....+++++++|+........
T Consensus 328 ~e~v~~s~y~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~pry~g~~~evGPlAR~~~~~~~~~~~~~p~~~~~~~~~~~~ 407 (542)
T 1e3d_B 328 EEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLG 407 (542)
T ss_dssp EEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHHHHHHHTCC
T ss_pred HCCCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 03464243055556886664577710015445654234500068863201999987343447523368999999981898
Q ss_pred --CCCCCCCCCCHHHCC--HHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
Q ss_conf --786720111123030--448999975675430----575557776158974899998895117999998799808899
Q gi|254780855|r 284 --NKVGPVSASDPKIVP--PKRADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396)
Q Consensus 284 --~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~----~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396)
.......+..+++++ .+...++++++.+.. ......+...+++|+|+|++|||||+|+||++++ ||+|++|
T Consensus 408 ~~~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~~~~p~~G~GvG~vEAPRG~L~H~~~ie-~GkI~~~ 486 (542)
T 1e3d_B 408 PEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTIE-DGKIDNF 486 (542)
T ss_dssp GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC-CCEEEEE
T ss_conf 655687387899999999999999999999766336678740577779998479999988552058999985-9989898
Q ss_pred EEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 9835875686---------88999970880575------999897609120553
Q gi|254780855|r 356 KIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 356 ~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|||+|||||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 487 ~ii~PTt~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~v~~iiRsfDPC~sC~ 540 (542)
T 1e3d_B 487 QLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACS 540 (542)
T ss_dssp EEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 998957232563222556549999948998788640555656750278750210