HHsearch results for GI: 254780855 and protein with PDBid: 1wui_L

>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=100.00  E-value=0  Score=595.59  Aligned_cols=385  Identities=15%  Similarity=0.102  Sum_probs=304.4

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r    7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK   86 (396)
Q Consensus         7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~   86 (396)
                      -|-.|.|.|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|+
T Consensus         3 ~~~~i~IdPit-RiEG~l~l~l~vd~g~V~~a~~~-~~~~RGfE~~l~gr~~~d~~~it~RICGiC~~sH~~a~~~A~E~   80 (534)
T 1wui_L            3 YSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDN   80 (534)
T ss_dssp             CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHH
T ss_pred             CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHCEEECHHHHHHHHHHHHHH
T ss_conf             56657988876-03424899999829999999984-56642699987799978977664100031745899999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf             8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r   87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL----------------------------------------  126 (396)
Q Consensus        87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~----------------------------------------  126 (396)
                      |+||+||++|++||+|++++|+||||++|||+++.+++..                                        
T Consensus        81 a~Gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  160 (534)
T 1wui_L           81 AVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFV  160 (534)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             95998897799999999999999999988887504143055321226836799987530653342357899889999998


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHHH
Q ss_conf             -------------------------------189999999999997899755976476336536200078--98999999
Q gi|254780855|r  127 -------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDI  173 (396)
Q Consensus       127 -------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~~  173 (396)
                                                     .++.+++++|+.+++++++++|+++|+++++|||+++.+  +...++++
T Consensus       161 ~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~G~~~h~~~~~~GGv~~~~~~~~~~~~~~  240 (534)
T 1wui_L          161 ETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEF  240 (534)
T ss_dssp             HTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf             75004776665445887523477122035678999999999999999999808774444565154414677798999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-----CCH----------------------HHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999999984-----483----------------------3344212211230333310235665101367
Q gi|254780855|r  174 GCWCDSFPSALNDISDLLT-----GNR----------------------IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG  226 (396)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~-----~~~----------------------~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g  226 (396)
                      ...++....+.........     ...                      ....++...|.............++..+.++
T Consensus       241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~r~~~~Gv~~~~~~~~~~~~d~~~i~e~  320 (534)
T 1wui_L          241 EALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEH  320 (534)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCEEECCCCCCCCCCCHHHHHCC
T ss_conf             99999999999998767899997643046652886552100224566554110221265488675560345587886425


Q ss_pred             CCCHHHH----CCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC------------------
Q ss_conf             6010210----175443346775400101232012211000116875899999996210357------------------
Q gi|254780855|r  227 AAWDLRK----SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------------------  284 (396)
Q Consensus       227 ~~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------------------  284 (396)
                      +.++.+.    .+||..+....+.......+++|++.+.+.+..+++++++|+.+.......                  
T Consensus       321 v~~~~~~~~~~~~P~~~~t~p~~~~~~~~~~yS~~k~pry~g~~~evGPlAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~  400 (534)
T 1wui_L          321 VRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPE  400 (534)
T ss_dssp             CTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             74343157543586445776673113455676201032017874030229999975023782078999999986199874


Q ss_pred             -CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCCC-CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEE
Q ss_conf             -86720111123030--4489999756754305----755577761-589748999988951179999987998088999
Q gi|254780855|r  285 -KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK  356 (396)
Q Consensus       285 -~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~~-~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~  356 (396)
                       ......+..+++++  .+...++++++.+...    ...+..+.. |++|+|+|+||||||+|+||++++ ||+|++||
T Consensus       401 ~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~GkI~~y~  479 (534)
T 1wui_L          401 ALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNFQ  479 (534)
T ss_dssp             GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE-CCEEEEEE
T ss_conf             55753887999999999999999999997353033578640378778987089999988661069999991-99897989


Q ss_pred             EECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             835875686---------88999970880575------999897609120553
Q gi|254780855|r  357 IRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       357 ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
                      ||+||+||+         +++|++|+|++++|      ++++|||||||+||+
T Consensus       480 ii~PTt~N~~pr~~~~~~~~~e~~l~G~~v~d~~~~~~i~~iiRsfDPCisCa  532 (534)
T 1wui_L          480 LVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG  532 (534)
T ss_dssp             EECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             98987232663433556669999837998788531665645640157850421