HHsearch results for GI: 254780855 and protein with PDBid: 1wui_L
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=100.00 E-value=0 Score=595.59 Aligned_cols=385 Identities=15% Similarity=0.102 Sum_probs=304.4
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
-|-.|.|.|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|+
T Consensus 3 ~~~~i~IdPit-RiEG~l~l~l~vd~g~V~~a~~~-~~~~RGfE~~l~gr~~~d~~~it~RICGiC~~sH~~a~~~A~E~ 80 (534)
T 1wui_L 3 YSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDN 80 (534)
T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHCEEECHHHHHHHHHHHHHH
T ss_conf 56657988876-03424899999829999999984-56642699987799978977664100031745899999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf 8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396)
|+||+||++|++||+|++++|+||||++|||+++.+++..
T Consensus 81 a~Gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 160 (534)
T 1wui_L 81 AVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFV 160 (534)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 95998897799999999999999999988887504143055321226836799987530653342357899889999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHHH
Q ss_conf -------------------------------189999999999997899755976476336536200078--98999999
Q gi|254780855|r 127 -------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDI 173 (396)
Q Consensus 127 -------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~~ 173 (396)
.++.+++++|+.+++++++++|+++|+++++|||+++.+ +...++++
T Consensus 161 ~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~G~~~h~~~~~~GGv~~~~~~~~~~~~~~ 240 (534)
T 1wui_L 161 ETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEF 240 (534)
T ss_dssp HTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 75004776665445887523477122035678999999999999999999808774444565154414677798999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-----CCH----------------------HHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999984-----483----------------------3344212211230333310235665101367
Q gi|254780855|r 174 GCWCDSFPSALNDISDLLT-----GNR----------------------IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226 (396)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-----~~~----------------------~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g 226 (396)
...++....+......... ... ....++...|.............++..+.++
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~r~~~~Gv~~~~~~~~~~~~d~~~i~e~ 320 (534)
T 1wui_L 241 EALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEH 320 (534)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCEEECCCCCCCCCCCHHHHHCC
T ss_conf 99999999999998767899997643046652886552100224566554110221265488675560345587886425
Q ss_pred CCCHHHH----CCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC------------------
Q ss_conf 6010210----175443346775400101232012211000116875899999996210357------------------
Q gi|254780855|r 227 AAWDLRK----SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------------------ 284 (396)
Q Consensus 227 ~~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------------------ 284 (396)
+.++.+. .+||..+....+.......+++|++.+.+.+..+++++++|+.+.......
T Consensus 321 v~~~~~~~~~~~~P~~~~t~p~~~~~~~~~~yS~~k~pry~g~~~evGPlAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (534)
T 1wui_L 321 VRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPE 400 (534)
T ss_dssp CTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 74343157543586445776673113455676201032017874030229999975023782078999999986199874
Q ss_pred -CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCCC-CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEE
Q ss_conf -86720111123030--4489999756754305----755577761-589748999988951179999987998088999
Q gi|254780855|r 285 -KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356 (396)
Q Consensus 285 -~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~~-~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ 356 (396)
......+..+++++ .+...++++++.+... ...+..+.. |++|+|+|+||||||+|+||++++ ||+|++||
T Consensus 401 ~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~GkI~~y~ 479 (534)
T 1wui_L 401 ALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNFQ 479 (534)
T ss_dssp GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE-CCEEEEEE
T ss_conf 55753887999999999999999999997353033578640378778987089999988661069999991-99897989
Q ss_pred EECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 835875686---------88999970880575------999897609120553
Q gi|254780855|r 357 IRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 357 ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
||+||+||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 480 ii~PTt~N~~pr~~~~~~~~~e~~l~G~~v~d~~~~~~i~~iiRsfDPCisCa 532 (534)
T 1wui_L 480 LVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG 532 (534)
T ss_dssp EECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 98987232663433556669999837998788531665645640157850421