HHsearch results for GI: 254780855 and protein with PDBid: 2wpn_B
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=100.00 E-value=0 Score=597.86 Aligned_cols=384 Identities=16% Similarity=0.101 Sum_probs=306.1
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59984068686667755999998399899999880411578898740989878554431212344888999999999998
Q gi|254780855|r 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87 (396)
Q Consensus 8 ~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a 87 (396)
+-+|.|.|++ ++|||+++++++|||+|++|+++ |++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|
T Consensus 16 ~~~I~Idpvt-RiEGh~~l~v~~e~~~V~~a~~~-~~~~RGfEk~l~Gr~~~~a~~i~~RICGiC~~aH~lA~~~AvE~a 93 (495)
T 2wpn_B 16 RTTIAIDPVT-RIEGHLKAEVVVENGKVVDARLS-GGMYRGFETILRGRDPRDASQIVQRICGVCPTAHSTASVLALDEA 93 (495)
T ss_dssp EEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCC-CEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6589968966-03310799999829989999991-322307999977999889998862655107868999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHHH
Q ss_conf 388578889999999999999998899987433430564---------------------------18999999999999
Q gi|254780855|r 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------TPPLWGFEEREKLM 140 (396)
Q Consensus 88 ~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------~~~~~~~~~r~~~~ 140 (396)
+||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+.+++++|+.++
T Consensus 94 ~gi~vp~~a~~lR~l~~~~e~i~sH~lh~~~L~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~ 173 (495)
T 2wpn_B 94 FGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICH 173 (495)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09988988999999999999999889999875161320462112444526515666365665452799999999999999
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHC--------CEEEE
Q ss_conf 789975597647633653620007898999999999999999999999998-----44833344212--------21123
Q gi|254780855|r 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-----TGNRIFKQRNV--------NIGTV 207 (396)
Q Consensus 141 ~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~g~~ 207 (396)
++++++||+++||++++|||+++.++.+.+.++...++...++++...... ..+..+..... ..+..
T Consensus 174 ~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (495)
T 2wpn_B 174 EMVALFGGRMPHVQGQVVGGATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPL 253 (495)
T ss_dssp HHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCGGGGSSCCTTCCEEECCEEEC
T ss_pred HHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999709984558512561058899999999999999999999997889999998763788863776102444155566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC-------------CEEECCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 033331023566510136760102101754433467754-------------0010123201221100011687589999
Q gi|254780855|r 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD-------------IPIGKHGDCYDRYLVRMMEMRESVKIIR 274 (396)
Q Consensus 208 ~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 274 (396)
.......++..|+..++++..+|.++..+|..+...... .......++|.+.+.+....++.++++|
T Consensus 254 ~~~~~~~l~~~G~~~~g~~~~~d~~~i~e~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ys~~k~pry~g~~~evGplAR 333 (495)
T 2wpn_B 254 DNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAGAYSFVKAPRYDGLSLEVGPLAR 333 (495)
T ss_dssp STTSCCEEECCEEEETTEEECCCGGGEEEECTTBSBCGGGTTBCGGGCCCCBCTTCTTCCBSSCEEEETTBCCBCSHHHH
T ss_pred CCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHH
T ss_conf 86333663377214568404457320355555232346567777334763014442456630027653783015068789
Q ss_pred HHHHHHCC-------------CCC-----------CCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99962103-------------578-----------6720111123030--448999975675430575557776158974
Q gi|254780855|r 275 QCVNRLLG-------------KNK-----------VGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE 328 (396)
Q Consensus 275 ~~~~~~~~-------------~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~ 328 (396)
..+..... ... .....+..+++.+ .+...+.++++.+.........+..+++|+
T Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~~~p~~Ge 413 (495)
T 2wpn_B 334 MWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPASAE 413 (495)
T ss_dssp HHHHCCBCCHHHHHHHHHHHCCCCSBGGGGCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCCCCCSSEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 98743214822589999865311101112566556588999999999999999999999972535897523678899828
Q ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCC
Q ss_conf 89999889511799999879980889998358756868---------8999970880575------99989760912055
Q gi|254780855|r 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGE 393 (396)
Q Consensus 329 GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC 393 (396)
|+|++|||||+|+|||+++ ||+|++||||+||+||++ ++|++|.|++++| ++++|||||||+||
T Consensus 414 G~G~vEAPRG~L~H~~~i~-dg~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~~~~iirs~DPCisC 492 (495)
T 2wpn_B 414 GTGFTEAPRGSLLHYVKVK-DSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDPXLGC 492 (495)
T ss_dssp EEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHSCCCCTTCCCCHHHHHTTTCBCSCTTSCHHHHHHHHHTCCBHHH
T ss_pred EEEEEECCCEEEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHEEECCCCCCCC
T ss_conf 9999988874079999996-998989999888722354210123477999985699876741056575620125987436
Q ss_pred C
Q ss_conf 3
Q gi|254780855|r 394 V 394 (396)
Q Consensus 394 ~ 394 (396)
+
T Consensus 493 a 493 (495)
T 2wpn_B 493 A 493 (495)
T ss_dssp H
T ss_pred C
T ss_conf 3