Query gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs 127 out of 1943
Neff 9.2
Searched_HMMs 23785
Date Tue May 31 21:39:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780855.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_4 NADH-quinone oxidoreduc 100.0 0 0 653.8 15.7 390 3-396 20-409 (409)
2 1wui_L Periplasmic [NIFE] hydr 100.0 0 0 595.6 31.7 385 7-394 3-532 (534)
3 2wpn_B Periplasmic [nifese] hy 100.0 0 0 597.9 29.8 384 8-394 16-493 (495)
4 1cc1_L Hydrogenase (large subu 100.0 0 0 594.0 29.8 387 5-394 8-496 (498)
5 1yqw_Q Periplasmic [NIFE] hydr 100.0 0 0 581.3 30.9 386 6-394 11-547 (549)
6 1e3d_B [NIFE] hydrogenase larg 100.0 0 0 575.8 32.5 386 6-394 10-540 (542)
7 1yq9_H Periplasmic [NIFE] hydr 100.0 0 0 570.3 29.6 389 1-394 1-534 (536)
8 3myr_B Nickel-dependent hydrog 100.0 0 0 562.5 29.5 380 11-394 5-559 (561)
9 2poz_A Putative dehydratase; o 64.4 5.9 0.00025 17.3 4.9 115 4-160 6-130 (392)
10 1xjs_A NIFU-like protein; SR17 54.6 8.5 0.00036 16.2 3.1 51 23-101 44-94 (147)
11 1t3q_C Quinoline 2-oxidoreduct 51.9 9.3 0.00039 15.9 4.8 38 341-379 196-237 (288)
12 1su0_B NIFU like protein ISCU; 47.4 11 0.00046 15.4 4.6 50 23-100 43-92 (159)
13 2qq4_A Iron-sulfur cluster bio 42.1 13 0.00055 14.9 5.2 52 23-102 42-93 (138)
14 2z7e_A ISCU protein, NIFU-like 40.0 14 0.00059 14.7 5.1 38 24-65 40-89 (157)
15 3a7r_A Lipoate-protein ligase 38.9 15 0.00061 14.6 8.1 62 328-390 252-317 (337)
16 3n4e_A Mandelate racemase/muco 38.2 15 0.00063 14.5 6.8 38 127-164 99-138 (393)
17 1u07_A TONB protein; beta-hair 37.2 15 0.00065 14.4 3.4 27 338-364 25-51 (90)
18 1ah9_A IF1, initiation factor 37.0 11 0.00047 15.4 1.4 40 14-55 10-49 (71)
19 3fxg_A Rhamnonate dehydratase; 35.6 16 0.00069 14.2 5.0 48 22-69 65-117 (455)
20 1vqz_A Lipoate-protein ligase, 35.2 17 0.0007 14.2 3.8 56 332-388 263-322 (341)
21 2w3s_A Xanthine dehydrogenase; 34.9 17 0.0007 14.1 4.0 48 331-379 350-408 (462)
22 1ufi_A CENP-B, major centromer 34.7 14 0.0006 14.6 1.7 13 106-118 29-41 (64)
23 3o6u_A Uncharacterized protein 33.6 18 0.00074 14.0 2.6 21 22-42 19-39 (128)
24 2k9k_A TONB2; metal transport; 32.6 18 0.00076 13.9 3.8 26 338-363 40-65 (106)
25 3lvl_A NIFU-like protein; prot 31.7 19 0.00079 13.8 4.3 39 23-65 41-90 (129)
26 2o56_A Putative mandelate race 31.4 19 0.0008 13.7 5.0 46 25-70 29-83 (407)
27 2a15_A Hypothetical protein RV 31.1 19 0.00081 13.7 3.0 25 340-368 109-133 (139)
28 2e5a_A Lipoyltransferase 1; li 29.9 20 0.00084 13.6 4.3 45 334-379 264-312 (347)
29 1kcz_A Beta-methylaspartase; b 29.9 20 0.00084 13.6 3.0 36 12-48 35-76 (413)
30 2p3z_A L-rhamnonate dehydratas 29.8 20 0.00085 13.6 4.1 49 21-69 69-122 (415)
31 1saw_A Hypothetical protein FL 29.8 19 0.00082 13.7 1.7 10 344-353 208-217 (225)
32 3lzk_A Fumarylacetoacetate hyd 29.0 6.9 0.00029 16.8 -0.7 10 337-346 346-355 (359)
33 2ehs_A ACP, acyl carrier prote 27.5 22 0.00092 13.3 2.2 42 70-112 32-74 (77)
34 1rvk_A Isomerase/lactonizing e 26.3 23 0.00097 13.2 3.6 24 128-151 106-129 (382)
35 3hrd_C Nicotinate dehydrogenas 25.8 24 0.00099 13.1 5.4 54 326-379 179-244 (296)
36 2qnw_A Acyl carrier protein; m 24.6 25 0.001 12.9 2.4 57 55-112 21-80 (82)
37 2ox4_A Putative mandelate race 22.9 27 0.0011 12.7 7.3 63 5-69 7-78 (403)
38 3bjs_A Mandelate racemase/muco 22.4 27 0.0011 12.7 3.3 32 332-365 387-418 (428)
39 2kzx_A Uncharacterized protein 22.2 27 0.0012 12.6 3.7 21 22-42 18-38 (131)
40 2og9_A Mandelate racemase/muco 20.5 30 0.0012 12.4 5.0 21 49-69 83-103 (393)
41 2oz8_A MLL7089 protein; struct 20.0 30 0.0013 12.3 3.2 24 128-151 108-131 (389)
No 1
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=100.00 E-value=0 Score=653.85 Aligned_cols=390 Identities=45% Similarity=0.831 Sum_probs=357.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44561599840686866677559999983998999998804115788987409898785544312123448889999999
Q gi|254780855|r 3 KKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYAL 82 (396)
Q Consensus 3 ~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~ 82 (396)
+.+++.|+|++||+||+++||+|++++||||+|+++++++||+|||||+||+||+|+|++.||+|||||||+||++|+++
T Consensus 20 ~~~~~~~~~~~Gp~hp~~~g~~r~~~~vdGe~V~~~~~~~G~~hRGfEkil~gr~~~~a~~i~~RICGiC~~aH~~A~~~ 99 (409)
T 3i9v_4 20 ELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYAL 99 (409)
T ss_dssp ------CBCCBC-------CCCEECCBCSSSSCCBCCEECCTTCCCHHHHGGGSCTTGGGGTSTTSSSSSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 45775699832898888888718999970989999788357643789999759996881002162012248689999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99998388578889999999999999998899987433430564189999999999997899755976476336536200
Q gi|254780855|r 83 AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162 (396)
Q Consensus 83 AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~ 162 (396)
|+|+|+|++||++++++|+|++++++||||++|+|.++.+++....+..+++.|++++++++.++|.++|+...++||+.
T Consensus 100 AvE~a~gi~vp~ra~~lR~ll~e~~~i~sHll~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~ggv~ 179 (409)
T 3i9v_4 100 AVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVK 179 (409)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCEE
T ss_conf 99998299788789999999999999999999871236313561588889999999999999860763110331224430
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 07898999999999999999999999998448333442122112303333102356651013676010210175443346
Q gi|254780855|r 163 QDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSE 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~ 242 (396)
..++......+...++.......+..+++...+.+..+....|..........+..|+..++++++++.++..||..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~g~~~~~~a~~~g~~~~~~~~~~v~~d~~~~~p~~~~~~ 259 (409)
T 3i9v_4 180 EDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYET 259 (409)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSSGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 36871677999999999999999999987508366763288600037889854877654566530343322366434566
Q ss_pred CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77540010123201221100011687589999999621035786720111123030448999975675430575557776
Q gi|254780855|r 243 LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGY 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 322 (396)
.++...+...++.+++...+..+..+|..+..+...+.+.... ..............+....+.+........+..
T Consensus 260 ~~~~~~~~~~Gd~~~~~~v~~~~~~~s~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (409)
T 3i9v_4 260 YTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPV----RDPNPQITPPPRHLLETSMEAVIYHFKHYTEGF 335 (409)
T ss_dssp SCCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----BCCCTTTSCCCGGGGGTCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6766677558862112122355555556778999975778761----000023130679999986664331354566677
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 15897489999889511799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 323 HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 323 ~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
++|+|+|+|+||||||+|+|||++|++|+|++||||+||+||++++|++|+|++++|++++|||||||+|||||
T Consensus 336 ~~p~Geg~g~vEAPRG~L~H~~~~d~~G~i~~~~ii~PT~~N~~~le~al~G~~i~D~~~iirS~DpC~sc~dr 409 (409)
T 3i9v_4 336 HPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409 (409)
T ss_dssp CCCSEEEECCEEETTEEEEEEEEECSSSSCSEEEEECHHHHTTTTTTTTTSSSCSGGGTHHHHTTCCCHHHHHC
T ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 58986799999858710899999979984999999898888999999997799178999998525975237789
No 2
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=100.00 E-value=0 Score=595.59 Aligned_cols=385 Identities=15% Similarity=0.102 Sum_probs=304.4
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
-|-.|.|.|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|+
T Consensus 3 ~~~~i~IdPit-RiEG~l~l~l~vd~g~V~~a~~~-~~~~RGfE~~l~gr~~~d~~~it~RICGiC~~sH~~a~~~A~E~ 80 (534)
T 1wui_L 3 YSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDN 80 (534)
T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHCEEECHHHHHHHHHHHHHH
T ss_conf 56657988876-03424899999829999999984-56642699987799978977664100031745899999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf 8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396)
|+||+||++|++||+|++++|+||||++|||+++.+++..
T Consensus 81 a~Gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 160 (534)
T 1wui_L 81 AVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFV 160 (534)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 95998897799999999999999999988887504143055321226836799987530653342357899889999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHHH
Q ss_conf -------------------------------189999999999997899755976476336536200078--98999999
Q gi|254780855|r 127 -------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVEDI 173 (396)
Q Consensus 127 -------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~~ 173 (396)
.++.+++++|+.+++++++++|+++|+++++|||+++.+ +...++++
T Consensus 161 ~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~G~~~h~~~~~~GGv~~~~~~~~~~~~~~ 240 (534)
T 1wui_L 161 ETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEF 240 (534)
T ss_dssp HTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 75004776665445887523477122035678999999999999999999808774444565154414677798999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-----CCH----------------------HHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999984-----483----------------------3344212211230333310235665101367
Q gi|254780855|r 174 GCWCDSFPSALNDISDLLT-----GNR----------------------IFKQRNVNIGTVKLEDAWGWGFSGVMIRGSG 226 (396)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-----~~~----------------------~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g 226 (396)
...++....+......... ... ....++...|.............++..+.++
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~r~~~~Gv~~~~~~~~~~~~d~~~i~e~ 320 (534)
T 1wui_L 241 EALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEH 320 (534)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCEEECCCCCCCCCCCHHHHHCC
T ss_conf 99999999999998767899997643046652886552100224566554110221265488675560345587886425
Q ss_pred CCCHHHH----CCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC------------------
Q ss_conf 6010210----175443346775400101232012211000116875899999996210357------------------
Q gi|254780855|r 227 AAWDLRK----SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN------------------ 284 (396)
Q Consensus 227 ~~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------------------ 284 (396)
+.++.+. .+||..+....+.......+++|++.+.+.+..+++++++|+.+.......
T Consensus 321 v~~~~~~~~~~~~P~~~~t~p~~~~~~~~~~yS~~k~pry~g~~~evGPlAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (534)
T 1wui_L 321 VRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPE 400 (534)
T ss_dssp CTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 74343157543586445776673113455676201032017874030229999975023782078999999986199874
Q ss_pred -CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCCC-CCCCCEEEEEECCCCEEEEEEEECCCCCEEEEE
Q ss_conf -86720111123030--4489999756754305----755577761-589748999988951179999987998088999
Q gi|254780855|r 285 -KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGYH-VPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCK 356 (396)
Q Consensus 285 -~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~~-~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ 356 (396)
......+..+++++ .+...++++++.+... ...+..+.. |++|+|+|+||||||+|+||++++ ||+|++||
T Consensus 401 ~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~GkI~~y~ 479 (534)
T 1wui_L 401 ALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNFQ 479 (534)
T ss_dssp GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEE-CCEEEEEE
T ss_conf 55753887999999999999999999997353033578640378778987089999988661069999991-99897989
Q ss_pred EECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 835875686---------88999970880575------999897609120553
Q gi|254780855|r 357 IRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 357 ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
||+||+||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 480 ii~PTt~N~~pr~~~~~~~~~e~~l~G~~v~d~~~~~~i~~iiRsfDPCisCa 532 (534)
T 1wui_L 480 LVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG 532 (534)
T ss_dssp EECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 98987232663433556669999837998788531665645640157850421
No 3
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=100.00 E-value=0 Score=597.86 Aligned_cols=384 Identities=16% Similarity=0.101 Sum_probs=306.1
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59984068686667755999998399899999880411578898740989878554431212344888999999999998
Q gi|254780855|r 8 SFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKL 87 (396)
Q Consensus 8 ~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a 87 (396)
+-+|.|.|++ ++|||+++++++|||+|++|+++ |++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|
T Consensus 16 ~~~I~Idpvt-RiEGh~~l~v~~e~~~V~~a~~~-~~~~RGfEk~l~Gr~~~~a~~i~~RICGiC~~aH~lA~~~AvE~a 93 (495)
T 2wpn_B 16 RTTIAIDPVT-RIEGHLKAEVVVENGKVVDARLS-GGMYRGFETILRGRDPRDASQIVQRICGVCPTAHSTASVLALDEA 93 (495)
T ss_dssp EEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCC-CEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6589968966-03310799999829989999991-322307999977999889998862655107868999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHHH
Q ss_conf 388578889999999999999998899987433430564---------------------------18999999999999
Q gi|254780855|r 88 LGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------TPPLWGFEEREKLM 140 (396)
Q Consensus 88 ~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------~~~~~~~~~r~~~~ 140 (396)
+||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+.+++++|+.++
T Consensus 94 ~gi~vp~~a~~lR~l~~~~e~i~sH~lh~~~L~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~ 173 (495)
T 2wpn_B 94 FGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICH 173 (495)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09988988999999999999999889999875161320462112444526515666365665452799999999999999
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHC--------CEEEE
Q ss_conf 789975597647633653620007898999999999999999999999998-----44833344212--------21123
Q gi|254780855|r 141 VFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-----TGNRIFKQRNV--------NIGTV 207 (396)
Q Consensus 141 ~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~g~~ 207 (396)
++++++||+++||++++|||+++.++.+.+.++...++...++++...... ..+..+..... ..+..
T Consensus 174 ~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (495)
T 2wpn_B 174 EMVALFGGRMPHVQGQVVGGATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPL 253 (495)
T ss_dssp HHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCGGGGSSCCTTCCEEECCEEEC
T ss_pred HHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999709984558512561058899999999999999999999997889999998763788863776102444155566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC-------------CEEECCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 033331023566510136760102101754433467754-------------0010123201221100011687589999
Q gi|254780855|r 208 KLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD-------------IPIGKHGDCYDRYLVRMMEMRESVKIIR 274 (396)
Q Consensus 208 ~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 274 (396)
.......++..|+..++++..+|.++..+|..+...... .......++|.+.+.+....++.++++|
T Consensus 254 ~~~~~~~l~~~G~~~~g~~~~~d~~~i~e~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ys~~k~pry~g~~~evGplAR 333 (495)
T 2wpn_B 254 DNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAGAYSFVKAPRYDGLSLEVGPLAR 333 (495)
T ss_dssp STTSCCEEECCEEEETTEEECCCGGGEEEECTTBSBCGGGTTBCGGGCCCCBCTTCTTCCBSSCEEEETTBCCBCSHHHH
T ss_pred CCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHH
T ss_conf 86333663377214568404457320355555232346567777334763014442456630027653783015068789
Q ss_pred HHHHHHCC-------------CCC-----------CCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99962103-------------578-----------6720111123030--448999975675430575557776158974
Q gi|254780855|r 275 QCVNRLLG-------------KNK-----------VGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEGYHVPVGE 328 (396)
Q Consensus 275 ~~~~~~~~-------------~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~ 328 (396)
..+..... ... .....+..+++.+ .+...+.++++.+.........+..+++|+
T Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~~~p~~Ge 413 (495)
T 2wpn_B 334 MWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPASAE 413 (495)
T ss_dssp HHHHCCBCCHHHHHHHHHHHCCCCSBGGGGCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCCCCCSSEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 98743214822589999865311101112566556588999999999999999999999972535897523678899828
Q ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCC
Q ss_conf 89999889511799999879980889998358756868---------8999970880575------99989760912055
Q gi|254780855|r 329 VYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGE 393 (396)
Q Consensus 329 GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC 393 (396)
|+|++|||||+|+|||+++ ||+|++||||+||+||++ ++|++|.|++++| ++++|||||||+||
T Consensus 414 G~G~vEAPRG~L~H~~~i~-dg~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~~~~iirs~DPCisC 492 (495)
T 2wpn_B 414 GTGFTEAPRGSLLHYVKVK-DSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDPXLGC 492 (495)
T ss_dssp EEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHSCCCCTTCCCCHHHHHTTTCBCSCTTSCHHHHHHHHHTCCBHHH
T ss_pred EEEEEECCCEEEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHEEECCCCCCCC
T ss_conf 9999988874079999996-998989999888722354210123477999985699876741056575620125987436
Q ss_pred C
Q ss_conf 3
Q gi|254780855|r 394 V 394 (396)
Q Consensus 394 ~ 394 (396)
+
T Consensus 493 a 493 (495)
T 2wpn_B 493 A 493 (495)
T ss_dssp H
T ss_pred C
T ss_conf 3
No 4
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=100.00 E-value=0 Score=594.01 Aligned_cols=387 Identities=17% Similarity=0.144 Sum_probs=296.3
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56159984068686667755999998399899999880411578898740989878554431212344888999999999
Q gi|254780855|r 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAV 84 (396)
Q Consensus 5 ~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~Ai 84 (396)
+..+.+|.++|++ ++|||++++++||||+|++|+++ |++|||||+||+||+|+|++.||+|||||||++|++|+++|+
T Consensus 8 ~~~~~~I~idPit-RiEGh~~l~v~vd~~~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~i~~RICGiC~~aH~lA~~~Av 85 (498)
T 1cc1_L 8 ADGKVKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQ 85 (498)
T ss_dssp ----CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 7981699988866-25403899999809989999990-432325999977999889898861410027878999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHH
Q ss_conf 998388578889999999999999998899987433430564-----------------------------------189
Q gi|254780855|r 85 EKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPP 129 (396)
Q Consensus 85 E~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~ 129 (396)
|+|+||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+
T Consensus 86 E~a~gi~vp~~a~~lR~ll~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (498)
T 1cc1_L 86 DDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQY 165 (498)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99809988988999999999999999989999875111321554335021200112566677652010000212358999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HC----CH------HHH
Q ss_conf 99999999999789975597647633653620007898999999999999999999999998-44----83------334
Q gi|254780855|r 130 LWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TG----NR------IFK 198 (396)
Q Consensus 130 ~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~------~~~ 198 (396)
.+++++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++......+ .. .. ...
T Consensus 166 ~~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (498)
T 1cc1_L 166 LKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGW 245 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999997499846584346885788999999999999999999999877899999999877776537773
Q ss_pred HHHCCEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCC
Q ss_conf 4212211230333310235--66510136760102101754433467754--------------0010123201221100
Q gi|254780855|r 199 QRNVNIGTVKLEDAWGWGF--SGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVR 262 (396)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~~--~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 262 (396)
.++...|.+........+. .|....+++..+|.++..+|..+...++. .......++|.+.+.+
T Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~g~~~~g~~~~~d~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~~ 325 (498)
T 1cc1_L 246 KNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRY 325 (498)
T ss_dssp CCEEECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEE
T ss_pred CCEEEEEECCCCCCHHHCCCCCCEEEECCCEECCHHHEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 31367410036653444013684586077635345571542673145235666657656534204555554431036211
Q ss_pred CHHHHHHHHHHHHHHHHHC-------------CC----------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 0116875899999996210-------------35----------786720111123030--4489999756754305755
Q gi|254780855|r 263 MMEMRESVKIIRQCVNRLL-------------GK----------NKVGPVSASDPKIVP--PKRADMKRSMESLIHHFKL 317 (396)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~-------------~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~ 317 (396)
....+++++++|..+.... .. ..........++..+ .+...+.++++.+......
T Consensus 326 ~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~ 405 (498)
T 1cc1_L 326 KDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAET 405 (498)
T ss_dssp TTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCC
T ss_pred CCCCHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 58612125889997532335820689988765410243035676445729999999999999999999999727899974
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCH---------HHHHHHHCCCCCCH------HHH
Q ss_conf 577761589748999988951179999987998088999835875686---------88999970880575------999
Q gi|254780855|r 318 YTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSA 382 (396)
Q Consensus 318 ~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~---------~~~e~al~G~~i~D------~~~ 382 (396)
......+++|+|+|+||||||+|+|||++| ||+|++||||+||+||+ +++|++|+|++++| +++
T Consensus 406 ~~~~~~p~~G~G~G~vEApRG~L~H~~~i~-dg~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~~~~ 484 (498)
T 1cc1_L 406 YVKSEIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGR 484 (498)
T ss_dssp BCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEE-CCEEEEEEEECCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 466899998289999987531218999997-9999888998987222521000245349999857998788534576757
Q ss_pred HHHHCCCCCCCC
Q ss_conf 897609120553
Q gi|254780855|r 383 ILGSLDIVFGEV 394 (396)
Q Consensus 383 iirSfDpC~sC~ 394 (396)
+|||||||+||+
T Consensus 485 iirs~DPCisCa 496 (498)
T 1cc1_L 485 LVRSYDPXLGCA 496 (498)
T ss_dssp HHHHTCCBHHHH
T ss_pred HHCCCCCCCCCC
T ss_conf 112469874364
No 5
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=100.00 E-value=0 Score=581.25 Aligned_cols=386 Identities=15% Similarity=0.110 Sum_probs=286.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+++-.|.|.|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|
T Consensus 11 ~~~~~i~IdP~t-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~it~RICGiC~~aH~~A~~~AvE 88 (549)
T 1yqw_Q 11 TFTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVD 88 (549)
T ss_dssp CCCEEEEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHEECHHHHHHHHHHHHH
T ss_conf 875006977867-02321799999969999999991-5656469999779998898877503423484589999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf 98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396)
Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396)
+|+||+||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 89 ~a~gi~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 168 (549)
T 1yqw_Q 89 DAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLK 168 (549)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHHHHTTSCCCGGGSHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98299889789999999999999998899998751530012100022342289997420145566543015789999999
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHH
Q ss_conf ----------------------------------189999999999997899755976476336536200078--98999
Q gi|254780855|r 127 ----------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELV 170 (396)
Q Consensus 127 ----------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~ 170 (396)
.+|.+++++|+.+++++++++|+++||++++|||++..+ +.+.+
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~r~~~~~~~~~l~G~~~h~~~~~~GGv~~~~~~~~~~l 248 (549)
T 1yqw_Q 169 AFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPL 248 (549)
T ss_dssp HHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECEECCCCCCCHHHH
T ss_conf 87740334434454446787512467332013568899999999999999999749874556167142705577899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCCCCCCCCCCCCCC----------CCH
Q ss_conf 999999999999999999998-448333442122112---------303333102356651013676----------010
Q gi|254780855|r 171 EDIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGWGFSGVMIRGSGA----------AWD 230 (396)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~~~~G~~~~~~g~----------~~~ 230 (396)
.+++..++...++..+.+..+ .....+...+...+. +...........+.....+|. .+|
T Consensus 249 ~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~D 328 (549)
T 1yqw_Q 249 ANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVD 328 (549)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999999999999987899999999999988652785442013014677655533456432467248767455443257
Q ss_pred ----------------HHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCC------------
Q ss_conf ----------------2101754433467754001012320122110001168758999999962103------------
Q gi|254780855|r 231 ----------------LRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------ 282 (396)
Q Consensus 231 ----------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------ 282 (396)
....+||......++........++|++.+.+.....++++++|+.......
T Consensus 329 ~~~i~E~v~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~p~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~ 408 (549)
T 1yqw_Q 329 LGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVL 408 (549)
T ss_dssp GGGEEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCEECCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 21027615611025787666765676777643223345522430533438840123899875022015811378899766
Q ss_pred -------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCC
Q ss_conf -------57867201111230304--489999756754305----75557776158974899998895117999998799
Q gi|254780855|r 283 -------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGG 349 (396)
Q Consensus 283 -------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~ 349 (396)
........+..+++.+. +...+.++++.+... .........+++|+|+|++|||||+|+||++++ |
T Consensus 409 ~~~~~~~~~~~~~~~R~~AR~~E~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~p~~g~G~G~vEAPRG~L~H~~~i~-~ 487 (549)
T 1yqw_Q 409 GKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIK-G 487 (549)
T ss_dssp HHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEEE-T
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-C
T ss_conf 532787666689499999999999999999999998460246778750677889997389999988772059999997-9
Q ss_pred CCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 80889998358756868---------8999970880575------999897609120553
Q gi|254780855|r 350 NKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 350 g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|+|++||||+||+||++ ++|++|.|++++| ++++|||||||+||+
T Consensus 488 G~I~~~~ii~PTt~N~~p~~~~~~~~~~e~al~g~~v~d~~~~~~i~~viRs~DPC~sCa 547 (549)
T 1yqw_Q 488 KKIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG 547 (549)
T ss_dssp TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 999798898886021462011457439999967998788742788878982078750210
No 6
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=100.00 E-value=0 Score=575.82 Aligned_cols=386 Identities=14% Similarity=0.111 Sum_probs=276.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+.+-.|.|.|++ ++|||+++++++|||+|++|++. +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|
T Consensus 10 ~~~~~I~IdP~t-RiEGh~~i~v~~d~g~V~~a~~~-~~~~RGfEk~l~Gr~~~da~~it~RICGIC~~sH~lA~~~AvE 87 (542)
T 1e3d_B 10 NYTGPIVVDPLT-RIEGHLRIEVEVEGGVIKEARSC-ATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLE 87 (542)
T ss_dssp CCCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHH
T ss_pred CCCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-EECCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 886466988866-31213899999969999999993-1035389998779998898887514430086689999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf 98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396)
Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396)
+|+|++||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 88 ~a~gi~~P~~a~~lR~L~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (542)
T 1e3d_B 88 DAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLKTF 167 (542)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98099989899999999999999998999887640761035532333685789998630364224728899988777766
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--CCHHHHHH
Q ss_conf --------------------------------18999999999999789975597647633653620007--89899999
Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD--IPPELVED 172 (396)
Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~--~~~~~~~~ 172 (396)
..|.+++++|+.++++++++||+++||++++|||+++. ++++.+.+
T Consensus 168 ~~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~gG~~~h~~~~vpGGv~~~~~l~~~~l~~ 247 (542)
T 1e3d_B 168 VASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPERIKQ 247 (542)
T ss_dssp HHTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEECCCCCCHHHHHH
T ss_conf 53022476542212477632346733303577899999999999999999984888666717616770577899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEE---------EECCCCCCC-----CCCCCCCC---CCCCCCCHHH--
Q ss_conf 9999999999999999998-44833344212211---------230333310-----23566510---1367601021--
Q gi|254780855|r 173 IGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIG---------TVKLEDAWG-----WGFSGVMI---RGSGAAWDLR-- 232 (396)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g---------~~~~~~~~~-----~~~~G~~~---~~~g~~~~~r-- 232 (396)
+...+....++.+..+... .....+...+...+ .+....... +...|... ......+|..
T Consensus 248 ~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~gg~~~~~s~g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~d~~~i 327 (542)
T 1e3d_B 248 FRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKI 327 (542)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGCBCCCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHCEECCCEEEECCCCEEEECCHHHH
T ss_conf 99999999999999777799999987555775178554023325456665543011000586799567771653457860
Q ss_pred -HCCCCCCCCC-----------CCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC-----------------
Q ss_conf -0175443346-----------77540010123201221100011687589999999621035-----------------
Q gi|254780855|r 233 -KSQPYECYSE-----------LDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK----------------- 283 (396)
Q Consensus 233 -~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----------------- 283 (396)
++.++++|.. ..+........++|.+.+.+....+++++++|+........
T Consensus 328 ~e~v~~s~y~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~pry~g~~~evGPlAR~~~~~~~~~~~~~p~~~~~~~~~~~~ 407 (542)
T 1e3d_B 328 EEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLG 407 (542)
T ss_dssp EEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHHHHHHHTCC
T ss_pred HCCCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 03464243055556886664577710015445654234500068863201999987343447523368999999981898
Q ss_pred --CCCCCCCCCCHHHCC--HHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
Q ss_conf --786720111123030--448999975675430----575557776158974899998895117999998799808899
Q gi|254780855|r 284 --NKVGPVSASDPKIVP--PKRADMKRSMESLIH----HFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396)
Q Consensus 284 --~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~----~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396)
.......+..+++++ .+...++++++.+.. ......+...+++|+|+|++|||||+|+||++++ ||+|++|
T Consensus 408 ~~~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~~~~p~~G~GvG~vEAPRG~L~H~~~ie-~GkI~~~ 486 (542)
T 1e3d_B 408 PEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTIE-DGKIDNF 486 (542)
T ss_dssp GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC-CCEEEEE
T ss_conf 655687387899999999999999999999766336678740577779998479999988552058999985-9989898
Q ss_pred EEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 9835875686---------88999970880575------999897609120553
Q gi|254780855|r 356 KIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 356 ~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|||+|||||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 487 ~ii~PTt~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~v~~iiRsfDPC~sC~ 540 (542)
T 1e3d_B 487 QLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACS 540 (542)
T ss_dssp EEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 998957232563222556549999948998788640555656750278750210
No 7
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=100.00 E-value=0 Score=570.32 Aligned_cols=389 Identities=16% Similarity=0.149 Sum_probs=280.9
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97445615998406868666775599999839989999988041157889874098987855443121234488899999
Q gi|254780855|r 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80 (396)
Q Consensus 1 ~~~~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa 80 (396)
|.+-.+|+ |.|.|++ ++|||+++++++|||+|++|+. .+++|||||+||+||+|+|++.||+|||||||++|++||
T Consensus 1 ~~~~~~~~--I~IdPit-RiEGh~~i~v~~e~g~V~~a~~-~~~~~RGfE~~l~Gr~~~da~~it~RICGIC~~aH~~A~ 76 (536)
T 1yq9_H 1 MSEMQGNK--IVVDPIT-RIEGHLRIEVEVEGGKIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALAS 76 (536)
T ss_dssp ------CE--EEECSCC-SSBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHH
T ss_pred CCCCCCCE--EEECCCC-CEEEEEEEEEEEECCEEEEEEE-ECCCCCHHHHHHCCCCHHHHHHHHHHHHEECHHHHHHHH
T ss_conf 98678974--8978987-5020389999982998999999-037652698986799988988775133130786899999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------
Q ss_conf 9999998388578889999999999999998899987433430564----------------------------------
Q gi|254780855|r 81 ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------- 126 (396)
Q Consensus 81 ~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------- 126 (396)
++|+|+|+||+||++|++||||++++|+||||++|||+|+.||+..
T Consensus 77 ~~AvE~a~gi~vp~~a~~lR~L~~~~e~i~sH~l~l~~l~~PD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (536)
T 1yq9_H 77 VRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQA 156 (536)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999982999798899999999999999999999987614032044223436868898775322753344589999999
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--H
Q ss_conf -------------------------------------1899999999999978997559764763365362000789--8
Q gi|254780855|r 127 -------------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--P 167 (396)
Q Consensus 127 -------------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~--~ 167 (396)
..+.+++++++.+++++++++|+++|+++++|||+++.++ +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~gh~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~G~~~h~~~~v~GGv~~~~~~~~ 236 (536)
T 1yq9_H 157 KVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRP 236 (536)
T ss_dssp HHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEEECCCCCCH
T ss_conf 99888875430444444334788620155200124578999999999999999999728875677426454714676588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHCCEEE----EC-----CCC---CCCCCCCCCCCCCCCCCC-----
Q ss_conf 99999999999999999999999844-8333442122112----30-----333---310235665101367601-----
Q gi|254780855|r 168 ELVEDIGCWCDSFPSALNDISDLLTG-NRIFKQRNVNIGT----VK-----LED---AWGWGFSGVMIRGSGAAW----- 229 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~----~~-----~~~---~~~~~~~G~~~~~~g~~~----- 229 (396)
+.+.+++..++....+.+.....+.. ...+......++. .. ... ...+...|.+...+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 316 (536)
T 1yq9_H 237 ERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNP 316 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCH
T ss_conf 99999999999999999998888999999887766650575541202655566665003035750798897442566588
Q ss_pred -------------HHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC-------------
Q ss_conf -------------021017544334677540010123201221100011687589999999621035-------------
Q gi|254780855|r 230 -------------DLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK------------- 283 (396)
Q Consensus 230 -------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------- 283 (396)
+....+||.......+.......+++|++.+.+....+++++++|+........
T Consensus 317 ~~i~e~v~~s~y~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~pry~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~ 396 (536)
T 1yq9_H 317 DLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKT 396 (536)
T ss_dssp GGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHEECHHHHCCCHHHHHHHHHHHH
T ss_conf 88750355132057543587667567765434444553010002435776302420411200221380267899998886
Q ss_pred ------CCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf ------7867201111230304--4899997567543057-----55577761589748999988951179999987998
Q gi|254780855|r 284 ------NKVGPVSASDPKIVPP--KRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350 (396)
Q Consensus 284 ------~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~-----~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g 350 (396)
.......+..++.... +...++++++.+.... +...+...+++|+|+|++|||||+|+||+++ +||
T Consensus 397 ~~~~~~~~~~~~~R~~aR~~E~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~p~~g~GvG~vEApRG~L~H~~~~-~~G 475 (536)
T 1yq9_H 397 LGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQ-RGG 475 (536)
T ss_dssp HTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEE-ETT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE-CCC
T ss_conf 2888765678899999999999999999999997223206556776557788999717999998833033899998-899
Q ss_pred CEEEEEEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 088999835875686---------88999970880575------999897609120553
Q gi|254780855|r 351 KPYRCKIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 351 ~i~~~~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
+|++||||+||+||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 476 ~I~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~i~~~iRs~DPCisCa 534 (536)
T 1yq9_H 476 KIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACG 534 (536)
T ss_dssp EEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 89898898987010364222556009999847998888631777757872267650200
No 8
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum}
Probab=100.00 E-value=0 Score=562.52 Aligned_cols=380 Identities=17% Similarity=0.177 Sum_probs=260.5
Q ss_pred EEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 84068686667755999998399899999880411578898740989878554431212344888999999999998388
Q gi|254780855|r 11 INFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGI 90 (396)
Q Consensus 11 ~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi 90 (396)
|.|.|++ ++|||+++++++||++|++|+++ +++|||||+||+||+|+||++||||||||||+||++||++|+|+|+|+
T Consensus 5 I~IdPit-RiEGh~~l~v~~d~g~V~~a~~~-~~~~RGfE~~l~Gr~~~da~~it~RICGIC~~aH~lAs~~AlE~a~Gv 82 (561)
T 3myr_B 5 IVVDPIT-RIEGHLRIEAQMDGATIAQAYSS-GTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRI 82 (561)
T ss_dssp EEECSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTC
T ss_pred EEECCCC-CEECCEEEEEEEECCEEEEEEEC-CCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8968977-20132689999989989899990-577650889857998789999860426568468999999999998499
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------------------------------------------
Q ss_conf 5788899999999999999988999874334305641-------------------------------------------
Q gi|254780855|r 91 EIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALT------------------------------------------- 127 (396)
Q Consensus 91 ~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~------------------------------------------- 127 (396)
+||++|++||||++.+|+||||++|||+|+.||+...
T Consensus 83 ~~p~~a~~lR~L~~~~e~iqsH~lh~y~L~~PD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (561)
T 3myr_B 83 ELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVESG 162 (561)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCHHHHTTCCHHHHHHHHHHHCCCSBCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88878999999999999998899999987410331354322257177899987621342237267999999999876640
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCH--------HHHHH
Q ss_conf ---------------------------8999999999999789975597647633653620007898--------99999
Q gi|254780855|r 128 ---------------------------PPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP--------ELVED 172 (396)
Q Consensus 128 ---------------------------~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~--------~~~~~ 172 (396)
+|.+++++++.++++++++|||+|||+++ +||+++.++. +.+.+
T Consensus 163 ~l~~~~~g~~~h~~~~~~~~~~~~~~~~~~~al~~~~~~~ei~~l~gGr~~Hp~~~-vgG~~~~~~~~~~~~~~~~~l~~ 241 (561)
T 3myr_B 163 QLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPNFV-VGGVPSPIDLDSDSALNAKRLAE 241 (561)
T ss_dssp CCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCCCB-TTBCSCCBCTTCTTSBCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-ECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 22000477678830127811222236779999999999999999653744453204-77773346510056778999999
Q ss_pred HHHHHHHHHHHHHHHH--HHH---HCCHHHHHHHCCEEEECCC----------CCCCCCCCCCCCCCCCCCC--------
Q ss_conf 9999999999999999--998---4483334421221123033----------3310235665101367601--------
Q gi|254780855|r 173 IGCWCDSFPSALNDIS--DLL---TGNRIFKQRNVNIGTVKLE----------DAWGWGFSGVMIRGSGAAW-------- 229 (396)
Q Consensus 173 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~~~~----------~~~~~~~~G~~~~~~g~~~-------- 229 (396)
+...++....+..... +.+ .....+.......+.+... ........|.+........
T Consensus 242 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~d~~~~ 321 (561)
T 3myr_B 242 VRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDLSTIHEVDLEAT 321 (561)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCGGGGSSSCCCCCEEECCEEESSSSCCGGGEEECCEEECTTCTTCCBCCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999999999996330569999988788886365756541233565655568763212686265076433343443454
Q ss_pred -HHHHCCCCCCCC----------------CCC----------CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHC-
Q ss_conf -021017544334----------------677----------5400101232012211000116875899999996210-
Q gi|254780855|r 230 -DLRKSQPYECYS----------------ELD----------FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL- 281 (396)
Q Consensus 230 -~~r~~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~- 281 (396)
...++.++++|+ ... +.......+++|++.+.+....+++++++|..+.+..
T Consensus 322 ~~i~E~v~~s~y~~~~~~~~~~~p~~g~t~~~~~~~~~~~~~~~~~~~~~~yS~~K~pry~g~~~evGPLARl~~~~~~~ 401 (561)
T 3myr_B 322 GEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGPLARVLMLYATG 401 (561)
T ss_dssp TTEEEECTTSSBCCTTCTTSCBCGGGCCCCBCSTTTTCCCSSCSSCCTTSCCCSSCEEEETTBCCBCSHHHHHHHHHHTT
T ss_pred CCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 44378447201120257766668878745556664557678743455335676102544589850138499999886028
Q ss_pred ------------C------CCCCCCCCCCCHHHCCH--HHHHHHHHHHHHHCC----CCC------CCCCCCCCCCCEEE
Q ss_conf ------------3------57867201111230304--489999756754305----755------57776158974899
Q gi|254780855|r 282 ------------G------KNKVGPVSASDPKIVPP--KRADMKRSMESLIHH----FKL------YTEGYHVPVGEVYA 331 (396)
Q Consensus 282 ------------~------~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~----~~~------~~~~~~~~~G~GvG 331 (396)
. ......+.+++++++.. ....+.++++.+... ... ..+...+.+|+|+|
T Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~AR~~E~~~~~~~~~~~l~~l~~~~~~~d~~~~~~~~~~~~~~p~~g~GvG 481 (561)
T 3myr_B 402 HDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVG 481 (561)
T ss_dssp CHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTTCSGGGSCSEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 87899999999875178854221569999999998999999999999999765323885334655567768987527999
Q ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCC-CCH------HHHHHHHCCCCCCCC
Q ss_conf 99889511799999879980889998358756868---------8999970880-575------999897609120553
Q gi|254780855|r 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQ-LAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 332 ~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~-i~D------~~~iirSfDpC~sC~ 394 (396)
+||||||+|+||++++ ||+|++||||+|||||++ ++|++|+|++ +.| ++++|||||||+||+
T Consensus 482 ~vEAPRG~L~H~~~ie-~G~I~~y~iI~PTt~N~~p~d~~~~~g~~e~al~g~~~~~~~~~~ve~~~vIRsfDPClsCa 559 (561)
T 3myr_B 482 IMEAPRGALGHWIVIE-DGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559 (561)
T ss_dssp EEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHHSSCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCCCCEEEEEEC-CCEEEEEEEECCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 9887874616799987-99897878989873211122766663499998548876778532688877762588850000
No 9
>2poz_A Putative dehydratase; octamer, structural genomics, PSI-2, protein structure initiative; 2.04A {Mesorhizobium loti MAFF303099}
Probab=64.39 E-value=5.9 Score=17.31 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCH----------HHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4561599840686866677559999983998999998804115----------788987409898785544312123448
Q gi|254780855|r 4 KKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLH----------RGTEKLIETKTFLQAVPYFDRLDYVAP 73 (396)
Q Consensus 4 ~~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~----------RGfE~il~Gr~~~da~~it~RICGIC~ 73 (396)
.+-+.|++..|-.|+ .=|+++.|+|.+=--++...+.+ +-|...|.||+|.+.-.+..++...-.
T Consensus 6 ~~i~~~~~~~~~~~~-----viV~i~t~~G~~G~GE~~~~~~~~~~~~~~~i~~~~~p~liG~d~~~ie~l~~~l~~~~~ 80 (392)
T 2poz_A 6 TGVNIYLLKSGRLHP-----VLVEISTDEGITGAGEAGIAYGVGGTAAAGMIKDLSERFLIGKDPSRIEELWSTMYDHSF 80 (392)
T ss_dssp EEEEEEECCBTTBCC-----EEEEEEETTSCCEEEEESCSSSSCHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHSS
T ss_pred EEEEEEEECCCCEEE-----EEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 389999978898436-----999999799998999640788877899999999987887469986789999999998312
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88999999999998388578889999999999999998899987433430564189999999999997899755976476
Q gi|254780855|r 74 MNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHA 153 (396)
Q Consensus 74 ~aH~~Aa~~AiE~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp 153 (396)
-.. +.+...... ...-..+.+-+.-|...+-+..++||+..-.
T Consensus 81 ---------------~~~--~~~~~~~~a--------------------~sAid~AlwDl~gK~~~~pv~~LLgg~~~~~ 123 (392)
T 2poz_A 81 ---------------WAK--NGGAIIFAG--------------------ISAIEQALWDIKGKCLGVPVYELFGGKIRDR 123 (392)
T ss_dssp ---------------TTT--TCCHHHHHH--------------------HHHHHHHHHHHHHHHHTSBHHHHTTCCSCSE
T ss_pred ---------------HCC--CCCHHHHHH--------------------HHHHHHHHHHHHHHHHCCCEEHHCCCCCCCC
T ss_conf ---------------203--673377888--------------------9999999999999984998002258865664
Q ss_pred CEEEECC
Q ss_conf 3365362
Q gi|254780855|r 154 AYFRPGG 160 (396)
Q Consensus 154 ~~~vpGG 160 (396)
....+.+
T Consensus 124 ~~~~~~~ 130 (392)
T 2poz_A 124 VRAYANG 130 (392)
T ss_dssp EEEEECS
T ss_pred CEEEECC
T ss_conf 3023202
No 10
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=54.62 E-value=8.5 Score=16.19 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=31.9
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 5599999839989999988041157889874098987855443121234488899999999999838857888999999
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRV 101 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~ 101 (396)
.+++.+.+++++|+++.+.. +| |.||-. +++...|.+-|-.+.....+...
T Consensus 44 ~i~i~l~i~~~~I~d~~f~~----~G--------------------Cai~~A----Sasil~e~~~gk~~~ea~~l~~~ 94 (147)
T 1xjs_A 44 RIRLTMKLDGDIVEDAKFEG----EG--------------------CSISMA----SASMMTQAIKGKDIETALSMSKI 94 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEE----ES--------------------SHHHHH----HHHHHHHHHTTSBHHHHHHHHHH
T ss_pred EEEEEEEECCCEEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 89999998289778867785----67--------------------498999----99999999859989999999999
No 11
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=51.89 E-value=9.3 Score=15.89 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=29.1
Q ss_pred EEEEEECCCCCEEEEEEE----CCCCCCHHHHHHHHCCCCCCH
Q ss_conf 999998799808899983----587568688999970880575
Q gi|254780855|r 341 GVYLISDGGNKPYRCKIR----APGYAHLQAMEFLCKGHQLAD 379 (396)
Q Consensus 341 ~H~~~~~~~g~i~~~~ii----~PT~~N~~~~e~al~G~~i~D 379 (396)
.-.+..+ +|+|+.++|. .|+.+-+...|++|.|.++++
T Consensus 196 a~~~~~~-~g~i~~~ria~Ggv~~~p~r~~~~E~~L~G~~~~~ 237 (288)
T 1t3q_C 196 AAGLSMQ-GGRCVAARIALGAVEERAHQAIRANDFLVGKVIDE 237 (288)
T ss_dssp EEEEEEE-TTEEEEEEEEEESSSSSCEECHHHHHHHTTCCCCH
T ss_pred EEEEEEE-CCEEEEEEEECCCCCCCEEEEHHHHHHHCCCCCCH
T ss_conf 8999998-99999998740565674376364788854899998
No 12
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=47.43 E-value=11 Score=15.43 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=32.8
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 559999983998999998804115788987409898785544312123448889999999999983885788899999
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIR 100 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR 100 (396)
.+++.+.+++++|.++.+.. +| |.+|-. +++...|.+-|-.+.....+..
T Consensus 43 ~i~i~l~i~~~~I~di~f~~----~G--------------------Cai~~A----Sasi~~e~i~Gk~~~e~~~l~~ 92 (159)
T 1su0_B 43 VISLTVKFDEDKIEDIAFAG----NG--------------------CTISTA----SSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp EEEEEEEESSSSEEEEEEEE----EC--------------------CHHHHH----HHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEECCCEEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 79999997299889989997----17--------------------789899----9999999984998999999999
No 13
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=42.10 E-value=13 Score=14.88 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=33.0
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 55999998399899999880411578898740989878554431212344888999999999998388578889999999
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~L 102 (396)
-+++.+.+++++|+++.+.. +| |.+|-. +++...|.+-|-++.....+....
T Consensus 42 ~i~i~l~i~~~~I~d~~f~~----~G--------------------Cai~~A----Sas~l~e~i~gk~~~ea~~l~~~~ 93 (138)
T 2qq4_A 42 QVEVMVLLEGDTIADIRFQG----QG--------------------CAISTA----SASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEEEEETTEEEEEEEEE----EC--------------------CHHHHH----HHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEEEECCCEEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89999997376788888996----48--------------------589999----999999998499999999999999
No 14
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=40.01 E-value=14 Score=14.67 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=24.5
Q ss_pred EEEEEEEE--CCEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHH
Q ss_conf 59999983--99899999880411578----------89874098987855443
Q gi|254780855|r 24 LRLILELD--GEIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYF 65 (396)
Q Consensus 24 l~~~~~v~--~~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it 65 (396)
+++.+.|+ +++|.++.+.. +| +=.+++|++..+|..|+
T Consensus 40 i~i~l~Id~e~~~I~di~f~~----~GCais~AsaSil~e~i~Gktl~ea~~I~ 89 (157)
T 2z7e_A 40 MLFTIKVNPENDVIEDVRFKT----FGCGSAIAVSSMLTEMVKGKPIQYALNLT 89 (157)
T ss_dssp EEEEEEECTTTCBEEEEEEEE----ESCTTHHHHHHHHHHHHTTSBHHHHHHCC
T ss_pred EEEEEEEECCCCEEEEEEEEE----CCCHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 999999955999797889997----68756678999999997699599998512
No 15
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=38.90 E-value=15 Score=14.55 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=43.6
Q ss_pred CEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCC--HHHHHHHHCCCCCC--HHHHHHHHCCCC
Q ss_conf 4899998895117999998799808899983587568--68899997088057--599989760912
Q gi|254780855|r 328 EVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAH--LQAMEFLCKGHQLA--DVSAILGSLDIV 390 (396)
Q Consensus 328 ~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N--~~~~e~al~G~~i~--D~~~iirSfDpC 390 (396)
.-......+.|.+-..+.++ +|+|++++|-...... +..+|+.|+|.+.. ++..++.+++.-
T Consensus 252 ~~~~~~~~~~g~v~v~~~v~-~G~I~~~~i~gD~~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~~~ 317 (337)
T 3a7r_A 252 SHLLDERFTWGGVELHFDVE-KGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVD 317 (337)
T ss_dssp EEEEEEEETTEEEEEEEEEE-TTEEEEEEEEECCSCCHHHHHHHHHTTTCBSSHHHHHHHHHHTTTT
T ss_pred HHHHEEECCCCEEEEEEEEE-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 43300016785499999985-9999999997677872149999998779988999999999998764
No 16
>3n4e_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics; HET: MSE; 2.40A {Paracoccus denitrificans}
Probab=38.17 E-value=15 Score=14.48 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--CCEEEECCCCCC
Q ss_conf 18999999999999789975597647--633653620007
Q gi|254780855|r 127 TPPLWGFEEREKLMVFYERASGSRMH--AAYFRPGGVHQD 164 (396)
Q Consensus 127 ~~~~~~~~~r~~~~~~~~~~gG~~~H--p~~~vpGGv~~~ 164 (396)
..+.+-+.-+....-+.+++||+... +.+...++-...
T Consensus 99 d~AlwDl~gK~~g~pl~~lLGG~~r~~i~~y~s~~~~~~~ 138 (393)
T 3n4e_A 99 DIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAAR 138 (393)
T ss_dssp HHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCCC
T ss_conf 9999999987639984110588566555311212677521
No 17
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=37.18 E-value=15 Score=14.37 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=20.4
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 117999998799808899983587568
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAH 364 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N 364 (396)
|.....+.+|+||+|.+++|+-.|-..
T Consensus 25 G~v~v~f~I~~~G~v~~~~v~~s~~~~ 51 (90)
T 1u07_A 25 GQVKVKFDVTPDGRVDNVQILSAKPAN 51 (90)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEESSS
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCH
T ss_conf 489999999599989799999888976
No 18
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=37.03 E-value=11 Score=15.35 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=29.1
Q ss_pred CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCC
Q ss_conf 686866677559999983998999998804115788987409
Q gi|254780855|r 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55 (396)
Q Consensus 14 gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~G 55 (396)
|-+. ...|..++++.++|+..+-|.++ |-|-+..-+++.|
T Consensus 10 G~V~-e~lg~~~f~V~l~dg~~~la~i~-GkmRk~ri~i~~G 49 (71)
T 1ah9_A 10 GTVL-ETLPNTMFRVELENGHVVTAHIS-GKMRKNYIRILTG 49 (71)
T ss_dssp EEEE-EECSSSEEEEEETTSCEEEEEEC-SSGGGTTCCCCTT
T ss_pred EEEE-EECCCCEEEEEECCCCEEEEEEC-CHHEEEEEEECCC
T ss_conf 9999-98899699999889979999937-3450214997699
No 19
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Probab=35.55 E-value=16 Score=14.20 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCEEEEEEEECCEEEEEEEEECC-----CHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75599999839989999988041-----1578898740989878554431212
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGL-----LHRGTEKLIETKTFLQAVPYFDRLD 69 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~-----~~RGfE~il~Gr~~~da~~it~RIC 69 (396)
+.+=|+++.|+|.+=-.+...+. ..+-|..+|.|+||.+.-.|..++.
T Consensus 65 ~sviVrV~tddGi~G~GE~~~~~~~~~~i~~~lap~LiG~dp~~ie~l~~~m~ 117 (455)
T 3fxg_A 65 GSFLVEIEATDGTVGFATGFGGPPACWLVHQHFERFLIGADPRNTNLLFEQMY 117 (455)
T ss_dssp CEEEEEEEETTSCEEEEEEECHHHHHHHHHHTTHHHHTTCCTTCHHHHHHHHH
T ss_pred CEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 76999999799988999740858999999999999977998002999999999
No 20
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=35.21 E-value=17 Score=14.16 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=41.8
Q ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECCCC--CCHHHHHHHHCCCCCC--HHHHHHHHCC
Q ss_conf 9988951179999987998088999835875--6868899997088057--5999897609
Q gi|254780855|r 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGY--AHLQAMEFLCKGHQLA--DVSAILGSLD 388 (396)
Q Consensus 332 ~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~--~N~~~~e~al~G~~i~--D~~~iirSfD 388 (396)
....+.|.+--.+.++ +|+|+..+|--.-. ..+..+|++|+|.+.. ++..++..+|
T Consensus 263 ~~~~~~G~v~v~~~v~-~g~I~~i~i~gDf~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 322 (341)
T 1vqz_A 263 GIKFTSGKVEVFANVT-ESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTID 322 (341)
T ss_dssp EEEETTEEEEEEEEEE-TTEEEEEEEEESCCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSC
T ss_pred EEECCCCEEEEEEEEE-CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 5432685699999994-79999999987788734599999986799888999999997344
No 21
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=34.88 E-value=17 Score=14.13 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=35.3
Q ss_pred EEEECCCCE-------EEEEEEECCCCCEEEEEE----ECCCCCCHHHHHHHHCCCCCCH
Q ss_conf 999889511-------799999879980889998----3587568688999970880575
Q gi|254780855|r 331 AAVEAPKGE-------FGVYLISDGGNKPYRCKI----RAPGYAHLQAMEFLCKGHQLAD 379 (396)
Q Consensus 331 G~vEAPRG~-------L~H~~~~~~~g~i~~~~i----i~PT~~N~~~~e~al~G~~i~D 379 (396)
..-.++|-. ..-.+..+ +|+|+.++| +.|+.+-+...|++|.|.++++
T Consensus 350 ~~K~~~R~~~d~a~v~~a~~~~~~-~~~I~~~rIa~Ggv~~~P~ra~~~E~~L~Gk~l~~ 408 (462)
T 2w3s_A 350 CYKLSKRFDQDISAVCGCLNLTLK-GSKIETARIAFGGMAGVPKRAAAFEAALIGQDFRE 408 (462)
T ss_dssp EEEECSSSSSCCCSEEEEEEEEEE-TTEEEEEEEEEESSSSSCEECHHHHHTTTTSBCSH
T ss_pred HHHCCCCCCCCEEEEEEEEEEEEC-CCEEEEEEEEEECCCCEEEEHHHHHHHHCCCCCCH
T ss_conf 442056666662269999999964-99598999999887890444999999865999899
No 22
>1ufi_A CENP-B, major centromere autoantigen B; dimerization domain, salt bridge, riken structural genomics/proteomics initiative, RSGI; 1.65A {Homo sapiens} SCOP: a.30.4.1
Probab=34.72 E-value=14 Score=14.63 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999988999874
Q gi|254780855|r 106 IGRILSHLLNVTT 118 (396)
Q Consensus 106 ~e~i~sH~~h~~~ 118 (396)
-+++|||++|+-.
T Consensus 29 d~rvqshilhleh 41 (64)
T 1ufi_A 29 DDRVQSHILHLEH 41 (64)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 3899989988532
No 23
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR 2; 2.50A {Clostridium perfringens}
Probab=33.59 E-value=18 Score=13.99 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=18.3
Q ss_pred CCEEEEEEEECCEEEEEEEEE
Q ss_conf 755999998399899999880
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHI 42 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~ 42 (396)
+...++++|+||+|+++++..
T Consensus 19 ~~~~v~vtVkdGKI~~v~~~~ 39 (128)
T 3o6u_A 19 YKAKLSIKVSDGKITEAKYNE 39 (128)
T ss_dssp EEEEEEEEESSSSEEEEEEEE
T ss_pred CEEEEEEEEECCEEEEEEEEE
T ss_conf 769999999899699999976
No 24
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=32.61 E-value=18 Score=13.88 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=20.5
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 11799999879980889998358756
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYA 363 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~ 363 (396)
|...-.+.++++|+|.+.+|+-.+-.
T Consensus 40 G~V~v~f~I~~~G~v~~~~v~~ss~~ 65 (106)
T 2k9k_A 40 GFVTLSFTIDTTGKAVDINVVDANPK 65 (106)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEESSS
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 49999999928998988899864793
No 25
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 1q48_A 1r9p_A 1wfz_A
Probab=31.70 E-value=19 Score=13.78 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=28.3
Q ss_pred CEEEEEEEEC-CEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHH
Q ss_conf 5599999839-9899999880411578----------89874098987855443
Q gi|254780855|r 23 VLRLILELDG-EIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYF 65 (396)
Q Consensus 23 ~l~~~~~v~~-~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it 65 (396)
.+++.+.|++ +.|.|+.+.. +| +=.+++|++..++..|+
T Consensus 41 ~i~i~l~i~~~~iI~di~F~~----~GC~is~Asas~~~e~i~Gkt~~ea~~i~ 90 (129)
T 3lvl_A 41 VMKLQIKVNDEGIIEDARFKT----YGCGSAIASSSLVTEWVKGKSLDEAQAIK 90 (129)
T ss_dssp EEEEEEEECSSSCEEEEEEEE----ESCHHHHHHHHHHHHHHTTCCHHHHHTCC
T ss_pred EEEEEEEECCCCEEEEEEEEE----CCCHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 899999973785587787773----58889999999999998599699998653
No 26
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiative, PSI-2; 2.00A {Salmonella typhimurium LT2}
Probab=31.39 E-value=19 Score=13.75 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=24.6
Q ss_pred EEEEEEECCEEEEEEEEECC---------CHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999839989999988041---------15788987409898785544312123
Q gi|254780855|r 25 RLILELDGEIVERVDPHIGL---------LHRGTEKLIETKTFLQAVPYFDRLDY 70 (396)
Q Consensus 25 ~~~~~v~~~~V~~a~~~~g~---------~~RGfE~il~Gr~~~da~~it~RICG 70 (396)
=|+++.|+|.+=--++...+ +.+-+-.+|.|+||.|.-.|..++..
T Consensus 29 lV~I~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~p~liG~d~~di~~i~~~l~~ 83 (407)
T 2o56_A 29 VVKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKMLK 83 (407)
T ss_dssp EEEEEETTSCEEEEEESCSSSSCHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999989999899972078887489999999999998679996569999999997
No 27
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=31.10 E-value=19 Score=13.71 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCEEEEEEECCCCCCHHHH
Q ss_conf 79999987998088999835875686889
Q gi|254780855|r 340 FGVYLISDGGNKPYRCKIRAPGYAHLQAM 368 (396)
Q Consensus 340 L~H~~~~~~~g~i~~~~ii~PT~~N~~~~ 368 (396)
.+++++++++|||.+.+- .||+++|
T Consensus 109 ~~~v~~~~~dGkI~~~~~----y~D~~~~ 133 (139)
T 2a15_A 109 GVFTYRVNKAGLITNMRG----YWNLDMM 133 (139)
T ss_dssp EEEEEEECTTSCEEEEEE----ECCGGGC
T ss_pred EEEEEEECCCCEEEEEEE----EECHHHH
T ss_conf 899999989986999999----9882684
No 28
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=29.95 E-value=20 Score=13.58 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=34.4
Q ss_pred ECCCCEEEEEEEECCCCCEEEEEEECCC-CCC---HHHHHHHHCCCCCCH
Q ss_conf 8895117999998799808899983587-568---688999970880575
Q gi|254780855|r 334 EAPKGEFGVYLISDGGNKPYRCKIRAPG-YAH---LQAMEFLCKGHQLAD 379 (396)
Q Consensus 334 EAPRG~L~H~~~~~~~g~i~~~~ii~PT-~~N---~~~~e~al~G~~i~D 379 (396)
-.+.|.+--++.++ +|+|+.++|-.+- ..+ +.-+|++|+|.+...
T Consensus 264 ~~~~g~i~v~l~v~-~G~I~~~~i~gd~~~~~~~~~~~le~~L~G~~~~~ 312 (347)
T 2e5a_A 264 EQSHVEIKVFIDVK-NGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSP 312 (347)
T ss_dssp --CEEEEEEEEEEE-TTEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSCS
T ss_pred CCCCEEEEEEEEEE-CCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 36745899999996-99999999994232367459999999758998788
No 29
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A*
Probab=29.88 E-value=20 Score=13.58 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=25.0
Q ss_pred EECCCCCCCC------CCEEEEEEEECCEEEEEEEEECCCHHH
Q ss_conf 4068686667------755999998399899999880411578
Q gi|254780855|r 12 NFGPQHPAAH------GVLRLILELDGEIVERVDPHIGLLHRG 48 (396)
Q Consensus 12 ~~gp~~~~~~------g~l~~~~~v~~~~V~~a~~~~g~~~RG 48 (396)
.-=|++||+. +-+.|+++++||.|---+|.. ..|-|
T Consensus 35 ~~~p~t~gf~~v~~~~e~i~V~i~l~DG~~G~GEcaa-v~~~g 76 (413)
T 1kcz_A 35 TGSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAA-VQYSG 76 (413)
T ss_dssp ESCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECC-CTTTT
T ss_pred CCCCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECC-CCCCC
T ss_conf 4787777632022347169999997899889985314-56777
No 30
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiative; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Probab=29.82 E-value=20 Score=13.57 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCCEEEEEEEECCEEEEEEEEECC-----CHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 775599999839989999988041-----1578898740989878554431212
Q gi|254780855|r 21 HGVLRLILELDGEIVERVDPHIGL-----LHRGTEKLIETKTFLQAVPYFDRLD 69 (396)
Q Consensus 21 ~g~l~~~~~v~~~~V~~a~~~~g~-----~~RGfE~il~Gr~~~da~~it~RIC 69 (396)
.+.+=|+++.|+|.+=-.+...|. ..+-|..+|.|+||.|.-.|-+++.
T Consensus 69 ~~~v~VeIetddG~~G~Ge~~~g~~~~~~i~~~l~~~liG~dp~die~i~~~m~ 122 (415)
T 2p3z_A 69 LGTLIVEVEAENRQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQML 122 (415)
T ss_dssp SCEEEEEEEETTSCEEEEEEECHHHHHHHHHHTTHHHHTTSBTTCHHHHHHHHH
T ss_pred CCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 867999999899998999737817799999999999976999757899999999
No 31
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=29.79 E-value=19 Score=13.68 Aligned_cols=10 Identities=10% Similarity=-0.373 Sum_probs=4.0
Q ss_pred EEECCCCCEE
Q ss_conf 9987998088
Q gi|254780855|r 344 LISDGGNKPY 353 (396)
Q Consensus 344 ~~~~~~g~i~ 353 (396)
+++++=|.++
T Consensus 208 ~~i~glG~L~ 217 (225)
T 1saw_A 208 AGIHGLVSMT 217 (225)
T ss_dssp EEETTTEEEE
T ss_pred EEECCEEEEE
T ss_conf 9986735599
No 32
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=28.99 E-value=6.9 Score=16.80 Aligned_cols=10 Identities=10% Similarity=-0.087 Sum_probs=4.4
Q ss_pred CCEEEEEEEE
Q ss_conf 5117999998
Q gi|254780855|r 337 KGEFGVYLIS 346 (396)
Q Consensus 337 RG~L~H~~~~ 346 (396)
=|+|-+.|+-
T Consensus 346 ~G~i~n~Vv~ 355 (359)
T 3lzk_A 346 FGAIEQKVGK 355 (359)
T ss_dssp SCCEEEEEEE
T ss_pred EEEEEEEEEE
T ss_conf 2006779985
No 33
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A
Probab=27.55 E-value=22 Score=13.31 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHH
Q ss_conf 344888999999999998388578889-9999999999999988
Q gi|254780855|r 70 YVAPMNQEHAYALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSH 112 (396)
Q Consensus 70 GIC~~aH~~Aa~~AiE~a~gi~vp~~a-~llR~Ll~~~e~i~sH 112 (396)
|+-|..+ +.-+.++|+.||+++|+.. .-++.+-...++|+++
T Consensus 32 g~DSl~~-~el~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~ 74 (77)
T 2ehs_A 32 GADSLDV-VELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEK 74 (77)
T ss_dssp CCCHHHH-HHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 9976899-999999999988986999997189999999999987
No 34
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens str} SCOP: c.1.11.2 d.54.1.1
Probab=26.28 E-value=23 Score=13.15 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999978997559764
Q gi|254780855|r 128 PPLWGFEEREKLMVFYERASGSRM 151 (396)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~gG~~~ 151 (396)
.+.+-+.-+....-+..++||++.
T Consensus 106 ~AlwDl~gK~~~~Pv~~LLGg~~~ 129 (382)
T 1rvk_A 106 CALWDLAGRSLGQPVYKLIGGYRD 129 (382)
T ss_dssp HHHHHHHHHHHTCBHHHHHCCSCS
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 999999998849929997489643
No 35
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=25.80 E-value=24 Score=13.09 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=38.7
Q ss_pred CCCEEEEEEC-CCCE-------EEEEEEECCCCCEEEEEE----ECCCCCCHHHHHHHHCCCCCCH
Q ss_conf 9748999988-9511-------799999879980889998----3587568688999970880575
Q gi|254780855|r 326 VGEVYAAVEA-PKGE-------FGVYLISDGGNKPYRCKI----RAPGYAHLQAMEFLCKGHQLAD 379 (396)
Q Consensus 326 ~G~GvG~vEA-PRG~-------L~H~~~~~~~g~i~~~~i----i~PT~~N~~~~e~al~G~~i~D 379 (396)
.+.++++.+- +|-. ..-.++.+++|+|+.++| +.|+.+-+...|++|.|.++++
T Consensus 179 ~~~~~~~~K~~~R~~~d~a~v~~a~~~~~~~~~~i~~~ria~Ggv~~~P~r~~~~e~~L~G~~~~~ 244 (296)
T 3hrd_C 179 AHSASAFYKLAKRKSLAISVIGGGMAVKVDDAGVCTWASMRGGCIGRYPLHFKQAEEMLVGAPLTM 244 (296)
T ss_dssp TTEEEEEEEECSSSSSCCCSEEEEEEEEEETTTEEEEEEEEEETSSSSCEECHHHHHHHTTSBCCH
T ss_pred CCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEHHHHHHHCCCCCCH
T ss_conf 577504786346666664158999999981899505676714655770586076899863899999
No 36
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH}
Probab=24.61 E-value=25 Score=12.95 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=33.5
Q ss_pred CCCHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHH
Q ss_conf 9898785544-312-12344888999999999998388578889-9999999999999988
Q gi|254780855|r 55 TKTFLQAVPY-FDR-LDYVAPMNQEHAYALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSH 112 (396)
Q Consensus 55 Gr~~~da~~i-t~R-ICGIC~~aH~~Aa~~AiE~a~gi~vp~~a-~llR~Ll~~~e~i~sH 112 (396)
|.++.+.-.= .-. -+|+-|.. .+-....+|+.||+++|+.. .-++++-..+.+|+.|
T Consensus 21 ~~~~~~i~~~~~~~~dlg~DSl~-~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2qnw_A 21 GVDRARINPESNFIKDLDADSLD-SVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKA 80 (82)
T ss_dssp CCCGGGCCTTCBHHHHSCCCHHH-HHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCHHHHCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC
T ss_conf 86988758530189883997789-9999999999998997999997499999999999883
No 37
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=22.90 E-value=27 Score=12.73 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEC--CC-------HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 561599840686866677559999983998999998804--11-------578898740989878554431212
Q gi|254780855|r 5 KSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIG--LL-------HRGTEKLIETKTFLQAVPYFDRLD 69 (396)
Q Consensus 5 ~~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g--~~-------~RGfE~il~Gr~~~da~~it~RIC 69 (396)
+-+-|.+...|..+. -++=|+++.|+|.+=--++... +. .+-+-..|.|+||.+.-.+..++.
T Consensus 7 ~i~~~~~~~p~~~~~--~~vlV~i~td~G~~G~GE~~~~~~~~~~~~~~i~~~~~~~liG~d~~~i~~l~~~l~ 78 (403)
T 2ox4_A 7 KIEIFHVHTRPQSGQ--RPILVKVSTDEGIYGLGEAGIAYGVGGSAAAGILKDYAALLIGEDPFNTEAIWEKLF 78 (403)
T ss_dssp EEEEEEECCCTTTCC--CCEEEEEEETTSCEEEEEESCSSSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHH
T ss_pred EEEEEEEECCCCCCC--CEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 799999608987885--179999997999989984327888768999999999999977998132999999999
No 38
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein structure initiative; 2.70A {Polaromonas SP}
Probab=22.37 E-value=27 Score=12.66 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=18.2
Q ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECCCCCCH
Q ss_conf 9988951179999987998088999835875686
Q gi|254780855|r 332 AVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHL 365 (396)
Q Consensus 332 ~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~ 365 (396)
.+..|-+. +.=+++|++ ++++|+....+.|+.
T Consensus 387 ~l~vp~~P-GLGieid~d-~l~ky~~~~~~~~~~ 418 (428)
T 3bjs_A 387 CVEPPDAP-GLGIEVDES-IFEKYPAVDGPGYVV 418 (428)
T ss_dssp EECCCCSS-BTCCCCCGG-GTTTSCCCC------
T ss_pred EEECCCCC-CCCEEECHH-HHHHCCCCCCCCCEE
T ss_conf 89899989-997211899-992289999984047
No 39
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=22.19 E-value=27 Score=12.63 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.9
Q ss_pred CCEEEEEEEECCEEEEEEEEE
Q ss_conf 755999998399899999880
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHI 42 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~ 42 (396)
+..++++.|+|++|+++++..
T Consensus 18 ~~~~V~vtV~dgkIt~v~~~~ 38 (131)
T 2kzx_A 18 WKDTVTIEVKNGKIVSVDWNA 38 (131)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEEEECCEEEEEEEEE
T ss_conf 569999999899999999998
No 40
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, enolase superfamily, TIM barrel; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=20.47 E-value=30 Score=12.39 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=10.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 898740989878554431212
Q gi|254780855|r 49 TEKLIETKTFLQAVPYFDRLD 69 (396)
Q Consensus 49 fE~il~Gr~~~da~~it~RIC 69 (396)
+-.+|.||||.|.-.+..+++
T Consensus 83 l~p~liG~d~~~i~~~~~~l~ 103 (393)
T 2og9_A 83 IAPALIGEDPSDIAKLWDKLC 103 (393)
T ss_dssp HGGGGTTSCTTCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHH
T ss_conf 999876998678999999999
No 41
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.48A {Mesorhizobium loti MAFF303099}
Probab=20.02 E-value=30 Score=12.33 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999978997559764
Q gi|254780855|r 128 PPLWGFEEREKLMVFYERASGSRM 151 (396)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~gG~~~ 151 (396)
.+.+-+.-|...+-+..++||++.
T Consensus 108 ~ALwDl~gK~~~~Pv~~LlGg~~~ 131 (389)
T 2oz8_A 108 VALWDLAAKEAGLPLHVLLGSRRN 131 (389)
T ss_dssp HHHHHHHHHHHTSBHHHHTTCSCS
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 999999887729974774698654
Done!