HHSEARCH alignment of GI: 254780855 and SCOP domain: d1frfl_

Alignment
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=100.00  E-value=0  Score=585.92  Aligned_cols=385  Identities=15%  Similarity=0.106  Sum_probs=290.5

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r    7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK   86 (396)
Q Consensus         7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~   86 (396)
                      .|-.|.|+|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+
T Consensus         6 ~~~~I~IdPit-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~aH~~A~~~AvE~   83 (543)
T d1frfl_           6 FTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDD   83 (543)
T ss_dssp             CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCTHHHHTTSCGGGHHHHHGGGCSSSTTHHHHHHHHHHHH
T ss_pred             CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             52026977877-32314899999839989999990-36675098986799988978775034310776899999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf             8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r   87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL----------------------------------------  126 (396)
Q Consensus        87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~----------------------------------------  126 (396)
                      |+||+||++|++||+|++++++||||++|||+|+.+++..                                        
T Consensus        84 a~gi~vp~~A~~lR~L~~~~e~I~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (543)
T d1frfl_          84 AVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDKLKA  163 (543)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGTCCGGGGGTSCHHHHHHHHHHHSCCCGGGSHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             82999897899999999999999988989998625042054112323411788986245655677757889999999998


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHH
Q ss_conf             ---------------------------------189999999999997899755976476336536200078--989999
Q gi|254780855|r  127 ---------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVE  171 (396)
Q Consensus       127 ---------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~  171 (396)
                                                       ..+.+++++|+.++++++++||+++||++++|||+++++  +.+.+.
T Consensus       164 ~~~~g~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~l~G~~~h~~~~v~GGv~~~~~~~~~~~~  243 (543)
T d1frfl_         164 FVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLA  243 (543)
T ss_dssp             HHTTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEECCCCCCHHHHH
T ss_conf             87504456455433457872201773321013477899999999999999997499744572586617125668999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCC-------CCCCCCC------------
Q ss_conf             99999999999999999998-448333442122112---------303333102-------3566510------------
Q gi|254780855|r  172 DIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGW-------GFSGVMI------------  222 (396)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~-------~~~G~~~------------  222 (396)
                      +++..++...+++.+.+... .....+...+..++.         +........       ..+|...            
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~d~  323 (543)
T d1frfl_         244 NYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDL  323 (543)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
T ss_conf             99999999999999988889999999888776517854331121234666554345664335675276452654430456


Q ss_pred             -------CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC------------
Q ss_conf             -------1367601021017544334677540010123201221100011687589999999621035------------
Q gi|254780855|r  223 -------RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK------------  283 (396)
Q Consensus       223 -------~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------  283 (396)
                             ..|....+.....||......++.......+++|++.+.+.....++++++|+........            
T Consensus       324 ~~i~E~~~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~~~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~  403 (543)
T d1frfl_         324 GAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLG  403 (543)
T ss_dssp             TTCEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTCSSSCBSSCEEESSSSCCEESHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEECCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             44364256401046766577645778777554444466302112333586011008899852010268434889987676


Q ss_pred             -------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf             -------786720111123030--44899997567543----05755577761589748999988951179999987998
Q gi|254780855|r  284 -------NKVGPVSASDPKIVP--PKRADMKRSMESLI----HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN  350 (396)
Q Consensus       284 -------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~----~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g  350 (396)
                             ..........+++++  .+...+.++++.+.    ...........+++|+|+|+||||||+|+||++++ ||
T Consensus       404 ~~~~~~~~~~~~~~R~~AR~~E~~~s~~~i~~~i~~l~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~G  482 (543)
T d1frfl_         404 KLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGSLSHWIRIK-GK  482 (543)
T ss_dssp             HHTCCSGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TT
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CC
T ss_conf             41777665689499999999999999999999998433057778862577889997389999988870369999992-99


Q ss_pred             CEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf             0889998358756868---------8999970880575------999897609120553
Q gi|254780855|r  351 KPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV  394 (396)
Q Consensus       351 ~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~  394 (396)
                      +|++||||+||+||++         ++|++|+|++++|      ++++|||||||+||+
T Consensus       483 ~I~~y~ii~PTt~N~~p~~~~~~~~~~e~al~g~~i~d~~~~~~i~~~iRs~DPC~sCa  541 (543)
T d1frfl_         483 KIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG  541 (543)
T ss_dssp             EEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             89998898877021254444455459999847998788741777868883468760421


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nickel-iron hydrogenase, large subunit
domain: Nickel-iron hydrogenase, large subunit
species: Desulfovibrio fructosovorans [TaxId: 878]