HHSEARCH alignment of GI: 254780855 and SCOP domain: d2fug41

Alignment
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=643.13  Aligned_cols=375  Identities=45%  Similarity=0.805  Sum_probs=339.1

Q ss_pred             CCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             66677559999983998999998804115788987409898785544312123448889999999999983885788899
Q gi|254780855|r   18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQ   97 (396)
Q Consensus        18 ~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~   97 (396)
                      |..|||+|++++||||+|+||++++|++|||||+||+||+|+|++.||+|||||||+||++|+++|+|+|+|++||++++
T Consensus         1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~   80 (375)
T d2fug41           1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE   80 (375)
T ss_dssp             CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             99885289999976988999898306652689998749996882212063111038799999999999991998899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999998899987433430564189999999999997899755976476336536200078989999999999
Q gi|254780855|r   98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC  177 (396)
Q Consensus        98 llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~  177 (396)
                      ++|+|++++|+||||++|||+++.+++....+...+++++.++++++.++|+++|+++++|||+++.++...+..+...+
T Consensus        81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~  160 (375)
T d2fug41          81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf             99999999988767999999834520024388899999899999999846865520521202302279867889999998


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHH
Q ss_conf             99999999999998448333442122112303333102356651013676010210175443346775400101232012
Q gi|254780855|r  178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD  257 (396)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  257 (396)
                      +...+.+.+..+++...+.+..++...+..........+..|+..+.+|.+.+.++..++..+...++...+...+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  240 (375)
T d2fug41         161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD  240 (375)
T ss_dssp             TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             76088778898740367500002577533451023315765554555642133120067554556565534424776432


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             21100011687589999999621035786720111123030448999975675430575557776158974899998895
Q gi|254780855|r  258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK  337 (396)
Q Consensus       258 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPR  337 (396)
                      +...+..+..++..+..+...+..................    ..+....+..........+.+++|+|+|+|+|||||
T Consensus       241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApR  316 (375)
T d2fug41         241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPR----HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESAR  316 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCT----TCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSS
T ss_pred             CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             1021344442146899989974889874434411033569----999755454101344456677689957999997488


Q ss_pred             CEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             11799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r  338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR  396 (396)
Q Consensus       338 G~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr  396 (396)
                      |+|+|||++|++|+|++||||+||+||++++|++|+|++++|+++++||||||+|||||
T Consensus       317 G~L~H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr  375 (375)
T d2fug41         317 GELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR  375 (375)
T ss_dssp             SCBCEEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred             EEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             67999999989981899999898877999999996799167899998567976447898


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nqo4-like
domain: NADH-quinone oxidoreductase chain 4, Nqo4
species: Thermus thermophilus [TaxId: 274]