Query gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs 127 out of 1943
Neff 9.2
Searched_HMMs 13730
Date Wed Jun 1 10:33:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780855.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fug41 e.18.1.2 (4:35-409) NA 100.0 0 0 643.1 13.5 375 18-396 1-375 (375)
2 d1yq9h1 e.18.1.1 (H:7-536) Nic 100.0 0 0 590.1 29.7 382 10-394 2-528 (530)
3 d1cc1l_ e.18.1.1 (L:) Nickel-i 100.0 0 0 586.4 31.1 383 9-394 1-485 (487)
4 d1frfl_ e.18.1.1 (L:) Nickel-i 100.0 0 0 585.9 30.9 385 7-394 6-541 (543)
5 d1wuil1 e.18.1.1 (L:19-552) Ni 100.0 0 0 579.7 31.9 386 6-394 2-532 (534)
6 d1e3db_ e.18.1.1 (B:) Nickel-i 100.0 0 0 570.2 32.4 384 7-394 6-535 (537)
7 d1ffvc1 d.87.2.1 (C:178-287) C 76.9 1.8 0.00013 19.2 6.1 35 26-60 23-63 (110)
8 d1vqza1 d.224.1.3 (A:242-329) 74.7 1.6 0.00011 19.6 3.8 49 22-71 16-68 (88)
9 d1t3qc1 d.87.2.1 (C:177-285) Q 64.0 3.4 0.00025 17.3 4.5 36 26-61 21-62 (109)
10 d1v97a4 d.87.2.1 (A:415-528) X 62.9 3.6 0.00026 17.1 6.1 36 26-61 24-67 (114)
11 d1xjsa_ d.224.1.2 (A:) NifU {B 61.2 3.3 0.00024 17.4 3.1 51 23-101 44-94 (147)
12 d1jroa3 d.87.2.1 (A:346-462) X 54.9 4.9 0.00035 16.2 4.6 38 25-62 22-65 (117)
13 d1n62c1 d.87.2.1 (C:178-286) C 53.1 5.2 0.00038 16.0 6.9 35 26-60 23-63 (109)
14 d1x2ga1 d.224.1.3 (A:247-337) 47.2 6.3 0.00046 15.4 7.2 65 22-104 16-84 (91)
15 d1rm6b1 d.87.2.1 (B:217-323) 4 42.6 6 0.00044 15.6 2.0 37 24-60 22-62 (107)
16 d1ufia_ a.30.4.1 (A:) Dimerisa 38.6 6.5 0.00048 15.3 1.7 13 106-118 27-39 (48)
17 d1wfza_ d.224.1.2 (A:) Iron-su 37.9 8.7 0.00063 14.4 4.2 41 22-66 35-86 (130)
18 d1su0b_ d.224.1.2 (B:) IscU ho 36.6 9.1 0.00066 14.3 4.6 52 23-102 38-89 (136)
19 d1r9pa_ d.224.1.2 (A:) NifU-li 35.8 9.4 0.00068 14.2 4.1 39 23-65 40-89 (134)
20 d1jpma2 d.54.1.1 (A:1-125) L-A 35.0 9.6 0.0007 14.1 4.3 38 49-88 70-107 (125)
21 d2ntka1 d.153.2.1 (A:1-202) Hy 29.6 6.9 0.0005 15.2 0.6 14 368-381 167-180 (202)
22 d1t8ka_ a.28.1.1 (A:) Acyl car 28.5 12 0.00089 13.4 2.0 57 55-112 16-75 (77)
23 d1u07a_ d.212.1.2 (A:) TonB {E 26.8 13 0.00095 13.2 3.4 27 338-364 25-51 (90)
24 d2chra2 d.54.1.1 (A:1-126) Chl 26.4 13 0.00096 13.2 1.9 38 49-88 71-108 (126)
25 d1o98a1 c.105.1.1 (A:77-310) 2 24.9 14 0.001 13.0 1.5 67 109-175 46-127 (234)
26 d1yeya2 d.54.1.1 (A:2-140) RTS 21.3 16 0.0012 12.5 4.1 47 24-70 34-90 (139)
27 d1ah9a_ b.40.4.5 (A:) Translat 21.0 17 0.0012 12.5 1.4 40 14-55 10-49 (71)
No 1
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=643.13 Aligned_cols=375 Identities=45% Similarity=0.805 Sum_probs=339.1
Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 66677559999983998999998804115788987409898785544312123448889999999999983885788899
Q gi|254780855|r 18 PAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQ 97 (396)
Q Consensus 18 ~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~ 97 (396)
|..|||+|++++||||+|+||++++|++|||||+||+||+|+|++.||+|||||||+||++|+++|+|+|+|++||++++
T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375)
T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375)
T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999998899987433430564189999999999997899755976476336536200078989999999999
Q gi|254780855|r 98 LIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWC 177 (396)
Q Consensus 98 llR~Ll~~~e~i~sH~~h~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~ 177 (396)
++|+|++++|+||||++|||+++.+++....+...+++++.++++++.++|+++|+++++|||+++.++...+..+...+
T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375)
T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHH
Q ss_conf 99999999999998448333442122112303333102356651013676010210175443346775400101232012
Q gi|254780855|r 178 DSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD 257 (396)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
+...+.+.+..+++...+.+..++...+..........+..|+..+.+|.+.+.++..++..+...++...+...+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375)
T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375)
T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 21100011687589999999621035786720111123030448999975675430575557776158974899998895
Q gi|254780855|r 258 RYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPK 337 (396)
Q Consensus 258 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~G~GvG~vEAPR 337 (396)
+...+..+..++..+..+...+.................. ..+....+..........+.+++|+|+|+|+|||||
T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApR 316 (375)
T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPR----HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESAR 316 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCT----TCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSS
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 1021344442146899989974889874434411033569----999755454101344456677689957999997488
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 11799999879980889998358756868899997088057599989760912055359
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 396 (396)
|+|+|||++|++|+|++||||+||+||++++|++|+|++++|+++++||||||+|||||
T Consensus 317 G~L~H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375)
T d2fug41 317 GELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375)
T ss_dssp SCBCEEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred EEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 67999999989981899999898877999999996799167899998567976447898
No 2
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=100.00 E-value=0 Score=590.06 Aligned_cols=382 Identities=16% Similarity=0.130 Sum_probs=306.3
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98406868666775599999839989999988041157889874098987855443121234488899999999999838
Q gi|254780855|r 10 TINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLG 89 (396)
Q Consensus 10 ~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~g 89 (396)
+|.|+|++ ++|||+++++++|||+|++|++ +|++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|+|
T Consensus 2 ki~I~Pit-RiEGh~~l~l~vd~g~V~~a~~-~~~~~RGfEk~l~Gr~~~d~~~it~RICGiC~~aH~~a~~~AvE~a~g 79 (530)
T d1yq9h1 2 KIVVDPIT-RIEGHLRIEVEVEGGKIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVG 79 (530)
T ss_dssp EEEECSCC-SSBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHT
T ss_pred CEEECCCC-CEEEEEEEEEEEECCEEEEEEE-CCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 52846877-2243389999983998999998-136662699997799988988774112114686899999999999819
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------------------------
Q ss_conf 8578889999999999999998899987433430564-------------------------------------------
Q gi|254780855|r 90 IEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL------------------------------------------- 126 (396)
Q Consensus 90 i~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~------------------------------------------- 126 (396)
|+||++|++||+|++++|+||||++|||+|+.+|+..
T Consensus 80 i~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (530)
T d1yq9h1 80 VKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQAKVKALVESG 159 (530)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98898799999999999999999999998844100255334422768899875321743355589999999998887630
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--HHHHHHHHHH
Q ss_conf ----------------------------1899999999999978997559764763365362000789--8999999999
Q gi|254780855|r 127 ----------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIP--PELVEDIGCW 176 (396)
Q Consensus 127 ----------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~--~~~~~~~~~~ 176 (396)
..+.+++++|+.++++++.++|+++|+++++|||+++.++ ++.+.++...
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~al~~r~~~~~~~~~~~G~~~h~~~~v~GGv~~~~~~~~~~~~~~~~~ 239 (530)
T d1yq9h1 160 QLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKL 239 (530)
T ss_dssp CCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEECCCCCCCHHHHHHHHHH
T ss_conf 02422354445788630156200023568899999999999999999848876567146571503466788999999999
Q ss_pred HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999844---------------------------833344212211230333310235665101367601
Q gi|254780855|r 177 CDSFPSALNDISDLLTG---------------------------NRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAW 229 (396)
Q Consensus 177 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~~~g~~~ 229 (396)
++...++.+...+.+.. ......++...|.........+...|+..+.+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~~~~~~~e~v~~ 319 (530)
T d1yq9h1 240 YKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKY 319 (530)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCCCGGGEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCHHHEEECCCH
T ss_conf 99999999987777899888888767764154432203655445552445136763378764231545673461421666
Q ss_pred HHHHC----CCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-------------------CC
Q ss_conf 02101----75443346775400101232012211000116875899999996210357-------------------86
Q gi|254780855|r 230 DLRKS----QPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKN-------------------KV 286 (396)
Q Consensus 230 ~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-------------------~~ 286 (396)
+.++. +||..+....+.......+++|++.+.+....+++++++|+.+....... ..
T Consensus 320 s~~~~~~~~~p~~~~t~~~~~~~~~~~~ys~~k~p~~~~~~~evGplAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (530)
T d1yq9h1 320 SWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALF 399 (530)
T ss_dssp TTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGS
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 87547754486456677775545666784012231245763202278999864033570479999998987188865568
Q ss_pred CCCCCCCHHHCC--HHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEEC
Q ss_conf 720111123030--44899997567543057-----55577761589748999988951179999987998088999835
Q gi|254780855|r 287 GPVSASDPKIVP--PKRADMKRSMESLIHHF-----KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRA 359 (396)
Q Consensus 287 ~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~-----~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~ 359 (396)
.......++.+. .+...+.++++.+.... +...+...+++|+|+|+||||||+|+||+++ +||+|++||||+
T Consensus 400 ~~~~r~~aR~~E~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~GeG~G~vEApRG~L~H~~~~-~~G~I~~~~ii~ 478 (530)
T d1yq9h1 400 STLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQ-RGGKIENFQLVV 478 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEE-CCCEEEEEEEEC
T ss_conf 6054399999999999999999998413125556775446788999738999998877027999997-799899888989
Q ss_pred CCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 875686---------88999970880575------999897609120553
Q gi|254780855|r 360 PGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 360 PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
||+||+ +++|++|+|++++| ++++|||||||+||+
T Consensus 479 PT~~N~~p~~~~~~~~~~e~al~g~~~~d~~~~~~i~~~iRs~DPC~sCa 528 (530)
T d1yq9h1 479 PSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACG 528 (530)
T ss_dssp HHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 87111364444446039999836998788521766757861167750320
No 3
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=100.00 E-value=0 Score=586.39 Aligned_cols=383 Identities=17% Similarity=0.137 Sum_probs=293.4
Q ss_pred EEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99840686866677559999983998999998804115788987409898785544312123448889999999999983
Q gi|254780855|r 9 FTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396)
Q Consensus 9 ~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396)
++|.++|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+|+
T Consensus 1 ~kI~IdPvt-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~d~~~i~~RICGiC~~aH~lA~~~AvE~a~ 78 (487)
T d1cc1l_ 1 VKISIDPLT-RVEGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAF 78 (487)
T ss_dssp CEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCC-EEEEEEEEEEEECCCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 937968856-37536899999849989999981-3214269999779998898888504211358689999999999980
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------------HHHHHHH
Q ss_conf 88578889999999999999998899987433430564-----------------------------------1899999
Q gi|254780855|r 89 GIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL-----------------------------------TPPLWGF 133 (396)
Q Consensus 89 gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~-----------------------------------~~~~~~~ 133 (396)
||+||++|+++|+|++++|+||||++|||+|+.+++.. ..+.+++
T Consensus 79 gi~vp~~a~~lR~l~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 158 (487)
T d1cc1l_ 79 GVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYLKAL 158 (487)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99889789999999999999999898898750203215644340000000046677776512332012346779999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHH-H---------HHHC
Q ss_conf 9999999789975597647633653620007898999999999999999999999998-448333-4---------4212
Q gi|254780855|r 134 EEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFPSALNDISDLL-TGNRIF-K---------QRNV 202 (396)
Q Consensus 134 ~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---------~~~~ 202 (396)
++|+.++++++++||+++||++++|||++++++.+.+.++...++...+++....... .....+ . ....
T Consensus 159 ~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (487)
T d1cc1l_ 159 EIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVI 238 (487)
T ss_dssp HHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCCCCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999999974998676864368747789999999999999999999997658999999987555654277732136
Q ss_pred CEEEECCCCC--CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC--------------CEEECCCCCHHHHHCCCHHH
Q ss_conf 2112303333--1023566510136760102101754433467754--------------00101232012211000116
Q gi|254780855|r 203 NIGTVKLEDA--WGWGFSGVMIRGSGAAWDLRKSQPYECYSELDFD--------------IPIGKHGDCYDRYLVRMMEM 266 (396)
Q Consensus 203 ~~g~~~~~~~--~~~~~~G~~~~~~g~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 266 (396)
..|.+..... ......|....+++..+|.+...+|..+...++. ......+++|.+.+.+....
T Consensus 239 ~~g~~~~~~~~~~~~~~~g~~~~g~~~~~D~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~y~~~~ 318 (487)
T d1cc1l_ 239 AFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKP 318 (487)
T ss_dssp ECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEETTBC
T ss_pred EEECCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCC
T ss_conf 73022465434553247814765976044476640146603553367665575344111346765433100262017862
Q ss_pred HHHHHHHHHHHHHHC-------------CCC----------CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 875899999996210-------------357----------86720111123030--44899997567543057555777
Q gi|254780855|r 267 RESVKIIRQCVNRLL-------------GKN----------KVGPVSASDPKIVP--PKRADMKRSMESLIHHFKLYTEG 321 (396)
Q Consensus 267 ~~s~~~~~~~~~~~~-------------~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~~~ 321 (396)
+++++++|..+.... ... .........++... .+...+.++++.+..........
T Consensus 319 ~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~ 398 (487)
T d1cc1l_ 319 CEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKS 398 (487)
T ss_dssp CBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCC
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 00379899986502127147999988643122321567764358699999999999999999999987378999744578
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHH
Q ss_conf 615897489999889511799999879980889998358756868---------8999970880575------9998976
Q gi|254780855|r 322 YHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGS 386 (396)
Q Consensus 322 ~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirS 386 (396)
..+++|+|+|+||||||+|+|||+++ ||+|++||||+||+||++ ++|++|.|++++| ++++|||
T Consensus 399 ~~p~~g~GvG~vEApRG~L~H~~~i~-~g~i~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~~~~iirs 477 (487)
T d1cc1l_ 399 EIPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRS 477 (487)
T ss_dssp CCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCHHEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHC
T ss_conf 99999489999988970269999997-99898989988873235433422353399998479987785215679889731
Q ss_pred CCCCCCCC
Q ss_conf 09120553
Q gi|254780855|r 387 LDIVFGEV 394 (396)
Q Consensus 387 fDpC~sC~ 394 (396)
||||+||+
T Consensus 478 ~DPCisCa 485 (487)
T d1cc1l_ 478 YDPCLGCA 485 (487)
T ss_dssp TCCBHHHH
T ss_pred CCCCCCCC
T ss_conf 88651531
No 4
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=100.00 E-value=0 Score=585.92 Aligned_cols=385 Identities=15% Similarity=0.106 Sum_probs=290.5
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
.|-.|.|+|++ ++|||++++++||||+|++|+++ +++|||||+||+||+|+|++.||+|||||||++|++|+++|+|+
T Consensus 6 ~~~~I~IdPit-RiEGh~~l~v~vd~g~V~~a~~~-~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~aH~~A~~~AvE~ 83 (543)
T d1frfl_ 6 FTGPIVVDPIT-RIEGHLRIMVEVENGKVKDAWSS-SQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDD 83 (543)
T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCTHHHHTTSCGGGHHHHHGGGCSSSTTHHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-CCCCCHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 52026977877-32314899999839989999990-36675098986799988978775034310776899999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf 8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396)
|+||+||++|++||+|++++++||||++|||+|+.+++..
T Consensus 84 a~gi~vp~~A~~lR~L~~~~e~I~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (543)
T d1frfl_ 84 AVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDKLKA 163 (543)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGTCCGGGGGTSCHHHHHHHHHHHSCCCGGGSHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 82999897899999999999999988989998625042054112323411788986245655677757889999999998
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHH
Q ss_conf ---------------------------------189999999999997899755976476336536200078--989999
Q gi|254780855|r 127 ---------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVE 171 (396)
Q Consensus 127 ---------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~ 171 (396)
..+.+++++|+.++++++++||+++||++++|||+++++ +.+.+.
T Consensus 164 ~~~~g~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~l~G~~~h~~~~v~GGv~~~~~~~~~~~~ 243 (543)
T d1frfl_ 164 FVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLA 243 (543)
T ss_dssp HHTTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEECCCCCCHHHHH
T ss_conf 87504456455433457872201773321013477899999999999999997499744572586617125668999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCEEE---------ECCCCCCCC-------CCCCCCC------------
Q ss_conf 99999999999999999998-448333442122112---------303333102-------3566510------------
Q gi|254780855|r 172 DIGCWCDSFPSALNDISDLL-TGNRIFKQRNVNIGT---------VKLEDAWGW-------GFSGVMI------------ 222 (396)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~---------~~~~~~~~~-------~~~G~~~------------ 222 (396)
+++..++...+++.+.+... .....+...+..++. +........ ..+|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~d~ 323 (543)
T d1frfl_ 244 NYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDL 323 (543)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 99999999999999988889999999888776517854331121234666554345664335675276452654430456
Q ss_pred -------CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC------------
Q ss_conf -------1367601021017544334677540010123201221100011687589999999621035------------
Q gi|254780855|r 223 -------RGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK------------ 283 (396)
Q Consensus 223 -------~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------ 283 (396)
..|....+.....||......++.......+++|++.+.+.....++++++|+........
T Consensus 324 ~~i~E~~~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~~~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~ 403 (543)
T d1frfl_ 324 GAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLG 403 (543)
T ss_dssp TTCEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTCSSSCBSSCEEESSSSCCEESHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEECCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 44364256401046766577645778777554444466302112333586011008899852010268434889987676
Q ss_pred -------CCCCCCCCCCHHHCC--HHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf -------786720111123030--44899997567543----05755577761589748999988951179999987998
Q gi|254780855|r 284 -------NKVGPVSASDPKIVP--PKRADMKRSMESLI----HHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGN 350 (396)
Q Consensus 284 -------~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~----~~~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g 350 (396)
..........+++++ .+...+.++++.+. ...........+++|+|+|+||||||+|+||++++ ||
T Consensus 404 ~~~~~~~~~~~~~~R~~AR~~E~~~s~~~i~~~i~~l~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~-~G 482 (543)
T d1frfl_ 404 KLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGSLSHWIRIK-GK 482 (543)
T ss_dssp HHTCCSGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TT
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CC
T ss_conf 41777665689499999999999999999999998433057778862577889997389999988870369999992-99
Q ss_pred CEEEEEEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 0889998358756868---------8999970880575------999897609120553
Q gi|254780855|r 351 KPYRCKIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 351 ~i~~~~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
+|++||||+||+||++ ++|++|+|++++| ++++|||||||+||+
T Consensus 483 ~I~~y~ii~PTt~N~~p~~~~~~~~~~e~al~g~~i~d~~~~~~i~~~iRs~DPC~sCa 541 (543)
T d1frfl_ 483 KIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACG 541 (543)
T ss_dssp EEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 89998898877021254444455459999847998788741777868883468760421
No 5
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=100.00 E-value=0 Score=579.72 Aligned_cols=386 Identities=15% Similarity=0.104 Sum_probs=287.9
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61599840686866677559999983998999998804115788987409898785544312123448889999999999
Q gi|254780855|r 6 SRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVE 85 (396)
Q Consensus 6 ~~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE 85 (396)
+.|-.|.|+|+. ++|||+++++++|||+|++|++. |++|||||+||+||+|+|++.||+|||||||++|++|+++|+|
T Consensus 2 ~~~~~i~IdPit-RiEG~~~l~l~~d~g~V~~a~~~-~~~~RGfEk~l~gr~~~d~~~it~RICGiC~~aH~~a~~~AvE 79 (534)
T d1wuil1 2 SYSGPIVVDPVT-RIEGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVD 79 (534)
T ss_dssp CCCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHH
T ss_pred CCCCCEEECCCC-EEEEEEEEEEEEECCEEEEEEEC-CCCCCHHHHHHCCCCHHHHHHHHCCCEEECHHHHHHHHHHHHH
T ss_conf 856647977856-26545899999839989999982-4566319898679997896655341003178689999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------------------
Q ss_conf 98388578889999999999999998899987433430564---------------------------------------
Q gi|254780855|r 86 KLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL--------------------------------------- 126 (396)
Q Consensus 86 ~a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~--------------------------------------- 126 (396)
+|+||+||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 80 ~a~Gi~vP~~a~~lR~L~~~~e~I~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (534)
T d1wuil1 80 NAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTF 159 (534)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99399879889999999999999999999999874530024532333575779998753165323426799988999888
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC--CHHHHHH
Q ss_conf --------------------------------189999999999997899755976476336536200078--9899999
Q gi|254780855|r 127 --------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI--PPELVED 172 (396)
Q Consensus 127 --------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~--~~~~~~~ 172 (396)
.++.+++++|+.++++++++||+++||++++|||+++.+ +...++.
T Consensus 160 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~~~G~~~h~~~~~pGGv~~~~~~~~~~~~~ 239 (534)
T d1wuil1 160 VETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAE 239 (534)
T ss_dssp HHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 76411477665434578751346701011356789999999999999999982887444521026522578899899999
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HCCHHHH----------------------HHHCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999998-----4483334----------------------421221123033331023566510136
Q gi|254780855|r 173 IGCWCDSFPSALNDISDLL-----TGNRIFK----------------------QRNVNIGTVKLEDAWGWGFSGVMIRGS 225 (396)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------------------~~~~~~g~~~~~~~~~~~~~G~~~~~~ 225 (396)
+...++....+.....+.. ..+..+. .++...|.............++....+
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~d~~~i~e 319 (534)
T d1wuil1 240 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEE 319 (534)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHCEECCCEEECCCCCEECCCCHHHHEE
T ss_conf 99999999999999888899998775401565178644120100456555301121037568868765112457256101
Q ss_pred CCCCHHH----HCCCCCCCCCCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCC--------------C---
Q ss_conf 7601021----017544334677540010123201221100011687589999999621035--------------7---
Q gi|254780855|r 226 GAAWDLR----KSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGK--------------N--- 284 (396)
Q Consensus 226 g~~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--------------~--- 284 (396)
++..+.. ..+||.......+.......+++|++.+.+....++.++++|......... .
T Consensus 320 ~v~~s~y~~~~~~~P~~~~t~p~~~~~~~~~~ysw~kapry~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (534)
T d1wuil1 320 HVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGP 399 (534)
T ss_dssp ECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCG
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 47188744775457666777766333465555323115522785303028899986655338211678787898529886
Q ss_pred --CCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCC-CCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
Q ss_conf --86720111123030--4489999756754305----75557776-158974899998895117999998799808899
Q gi|254780855|r 285 --KVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGY-HVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396)
Q Consensus 285 --~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~-~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396)
.........+++.+ .+...++++++.+... ...+..+. .+++|+|+|++|||||+|+||++++ ||+|++|
T Consensus 400 ~~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~p~~~p~~GeG~g~vEApRG~L~H~~~i~-~G~I~~y 478 (534)
T d1wuil1 400 EALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNF 478 (534)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE-CCEEEEE
T ss_conf 556888999999999999999999999997464034578640278779997189999988874289999980-9989898
Q ss_pred EEECCCCCCHH---------HHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 98358756868---------8999970880575------999897609120553
Q gi|254780855|r 356 KIRAPGYAHLQ---------AMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 356 ~ii~PT~~N~~---------~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|||+||+||++ ++|++|+|++++| ++++|||||||+||+
T Consensus 479 ~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~i~~~iRsfDPCisCa 532 (534)
T d1wuil1 479 QLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACG 532 (534)
T ss_dssp EEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 897977010553332455449999827998788630665656640057861532
No 6
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=100.00 E-value=0 Score=570.15 Aligned_cols=384 Identities=15% Similarity=0.126 Sum_probs=277.8
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15998406868666775599999839989999988041157889874098987855443121234488899999999999
Q gi|254780855|r 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEK 86 (396)
Q Consensus 7 ~~~~~~~gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~ 86 (396)
.|-.|.|.|++ ++|||+++++++|||+|++|+++ +++|||||+||+||+|+|+++||+|||||||++|++|+++|+|+
T Consensus 6 ~~~~I~I~P~t-RiEGh~~l~v~~d~g~V~~a~~~-~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~sH~~a~~~AvE~ 83 (537)
T d1e3db_ 6 YTGPIVVDPLT-RIEGHLRIEVEVEGGVIKEARSC-ATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLED 83 (537)
T ss_dssp CCEEEEESSCC-SSBSCEEEEEEEETTEEEEEEEE-ECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CEEEEEEEEEEEECCEEEEEEEE-EECCCHHHHHHCCCCHHHHHHHHCCHHEECHHHHHHHHHHHHHH
T ss_conf 64025987866-32335899999829989999992-20463198986799978977663412140886899999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------------------
Q ss_conf 8388578889999999999999998899987433430564----------------------------------------
Q gi|254780855|r 87 LLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL---------------------------------------- 126 (396)
Q Consensus 87 a~gi~vp~~a~llR~Ll~~~e~i~sH~~h~~~l~~~~~~~---------------------------------------- 126 (396)
|+|++||++|++||+|++++|+||||++|||+|+.+++..
T Consensus 84 a~gi~~P~~a~~lR~L~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
T d1e3db_ 84 AINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLKTFV 163 (537)
T ss_dssp HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 80999998899999999999999999999998725211034334435736799986402752246388999877777776
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CCCHHHHHHH
Q ss_conf -------------------------------1899999999999978997559764763365362000--7898999999
Q gi|254780855|r 127 -------------------------------TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQ--DIPPELVEDI 173 (396)
Q Consensus 127 -------------------------------~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~--~~~~~~~~~~ 173 (396)
..+.+++++|+.++++++++||+++||++++|||+++ .++.+.++++
T Consensus 164 ~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~l~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~l~~~~l~~~ 243 (537)
T d1e3db_ 164 ASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPERIKQF 243 (537)
T ss_dssp HTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEECCCCCCHHHHHHH
T ss_conf 53013765320002676201367022146788899999999999999998617877703143475612666999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HCCHHHHHHHCCEEE---------ECCCCCCC-----CCCCCCC-CC--CCCCCCHHH--
Q ss_conf 999999999999999998--448333442122112---------30333310-----2356651-01--367601021--
Q gi|254780855|r 174 GCWCDSFPSALNDISDLL--TGNRIFKQRNVNIGT---------VKLEDAWG-----WGFSGVM-IR--GSGAAWDLR-- 232 (396)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~---------~~~~~~~~-----~~~~G~~-~~--~~g~~~~~r-- 232 (396)
...++...++.+..+... .....+.+ +...|. +....... +...|.. .+ .....+|..
T Consensus 244 ~~~l~~~~~~~e~~~~~d~~~~~~~~~~-~~~~g~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~i 322 (537)
T d1e3db_ 244 RELYVKARAFIEEVYIPDLLLVASYYKD-WGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKI 322 (537)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHCGG-GGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGCBCCCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEECCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHC
T ss_conf 9999999999999888999999987666-875278454022335346665542122012686688257773012568864
Q ss_pred -HCCCCCCCC-----------CCCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCC------------------
Q ss_conf -017544334-----------67754001012320122110001168758999999962103------------------
Q gi|254780855|r 233 -KSQPYECYS-----------ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLG------------------ 282 (396)
Q Consensus 233 -~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------------ 282 (396)
++.++++|. ...+........++|...+.+....++.++++|........
T Consensus 323 ~e~v~~s~y~~~~~~p~~~~t~P~~~~~~~~~~ys~~k~~~y~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (537)
T d1e3db_ 323 EEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLG 402 (537)
T ss_dssp EEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 14564233056666886676567743345333542022411148865346998876255547500006678899871988
Q ss_pred -CCCCCCCCCCCHHHCC--HHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
Q ss_conf -5786720111123030--4489999756754305----75557776158974899998895117999998799808899
Q gi|254780855|r 283 -KNKVGPVSASDPKIVP--PKRADMKRSMESLIHH----FKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRC 355 (396)
Q Consensus 283 -~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~----~~~~~~~~~~~~G~GvG~vEAPRG~L~H~~~~~~~g~i~~~ 355 (396)
...........+++++ .+...+.++++.+... .+.......+++|+|+|++|||||+|+||++++ ||+|++|
T Consensus 403 ~~~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~p~~G~G~G~vEAPRG~L~H~~~~~-~G~I~~~ 481 (537)
T d1e3db_ 403 PEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTIE-DGKIDNF 481 (537)
T ss_dssp GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC-CCEEEEE
T ss_conf 655788175499999999999999999998776258889823177889998679999998786589999983-9989899
Q ss_pred EEECCCCCCH---------HHHHHHHCCCCCCH------HHHHHHHCCCCCCCC
Q ss_conf 9835875686---------88999970880575------999897609120553
Q gi|254780855|r 356 KIRAPGYAHL---------QAMEFLCKGHQLAD------VSAILGSLDIVFGEV 394 (396)
Q Consensus 356 ~ii~PT~~N~---------~~~e~al~G~~i~D------~~~iirSfDpC~sC~ 394 (396)
|||+||+||+ +++|.+|.|++++| ++++|||||||+||+
T Consensus 482 ~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~i~~~iRs~DPC~sCa 535 (537)
T d1e3db_ 482 QLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACS 535 (537)
T ss_dssp EEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEECCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 998977100463201466429999848998788530655657862167650100
No 7
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=76.88 E-value=1.8 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=24.5
Q ss_pred EEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHH
Q ss_conf 99998399899999880411------578898740989878
Q gi|254780855|r 26 LILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQ 60 (396)
Q Consensus 26 ~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~d 60 (396)
+.++++|++|.++++..|.+ ....|++|.|+++.+
T Consensus 23 ~~~~~~~~~i~~~ria~ggv~~~P~r~~~~e~~L~G~~~~~ 63 (110)
T d1ffvc1 23 VVMRKSGNTVSHIRIALTNVAPTALRAEAAEAALLGKAFTK 63 (110)
T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHTTBTSBCCH
T ss_pred EEEEEECCEEEEEEEEEECCCCEEEEEHHHHHHHCCCCCCH
T ss_conf 68997299798999998536875676044443303776666
No 8
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=74.71 E-value=1.6 Score=19.65 Aligned_cols=49 Identities=6% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCEEEEEEEECCEEEEEEEEECCCH----HHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 7559999983998999998804115----7889874098987855443121234
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGLLH----RGTEKLIETKTFLQAVPYFDRLDYV 71 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~~~----RGfE~il~Gr~~~da~~it~RICGI 71 (396)
|.+.+.+.|++|+|.++++..-.+. .-+|..|.|..+.. -.|.+.++.+
T Consensus 16 G~vev~l~V~~G~I~~iki~GDff~~~~i~~le~~L~G~~y~~-~~i~~~L~~~ 68 (88)
T d1vqza1 16 GKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYER-EDVLKALKTI 68 (88)
T ss_dssp EEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHTTCBSSH-HHHHHHHTTS
T ss_pred CEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCH-HHHHHHHHHC
T ss_conf 6799999981898979999804799312999999976997789-9999999848
No 9
>d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]}
Probab=63.99 E-value=3.4 Score=17.26 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=23.4
Q ss_pred EEEEEECCEEEEEEEEECC------CHHHHHHHHCCCCHHHH
Q ss_conf 9999839989999988041------15788987409898785
Q gi|254780855|r 26 LILELDGEIVERVDPHIGL------LHRGTEKLIETKTFLQA 61 (396)
Q Consensus 26 ~~~~v~~~~V~~a~~~~g~------~~RGfE~il~Gr~~~da 61 (396)
+.++++|++|.++++..|. ...+.|..|+|+++.+.
T Consensus 21 ~~~~~~~g~i~~~ria~G~v~~~p~r~~~~E~~L~G~~~~~~ 62 (109)
T d1t3qc1 21 AGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDES 62 (109)
T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTCCCCHH
T ss_pred EEEEEECCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 279985998989999997768814657999998728974157
No 10
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]}
Probab=62.90 E-value=3.6 Score=17.13 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=25.1
Q ss_pred EEEEEEC--CEEEEEEEEECCCH------HHHHHHHCCCCHHHH
Q ss_conf 9999839--98999998804115------788987409898785
Q gi|254780855|r 26 LILELDG--EIVERVDPHIGLLH------RGTEKLIETKTFLQA 61 (396)
Q Consensus 26 ~~~~v~~--~~V~~a~~~~g~~~------RGfE~il~Gr~~~da 61 (396)
+.+.+|+ ++|.++++..|.+- .-.|.+|.|+...+.
T Consensus 24 ~~v~l~~~~~~i~~~ria~Ggva~~p~r~~~~E~~L~Gk~~~~~ 67 (114)
T d1v97a4 24 MRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEK 67 (114)
T ss_dssp EEEEESTTSSBEEEEEEEEESSSSSCEECHHHHHTTTTCBSSHH
T ss_pred EEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHH
T ss_conf 78999869998989999876377644039999998707988999
No 11
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=61.18 E-value=3.3 Score=17.36 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=31.1
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 5599999839989999988041157889874098987855443121234488899999999999838857888999999
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRV 101 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~ 101 (396)
.+++.+.+++++|+++.+.. +| |.+|-. +++...|.+-|-++.....+...
T Consensus 44 ~i~i~l~i~~~~I~d~~f~~----~G--------------------Cai~~A----Sasil~e~~~gk~~~~a~~l~~~ 94 (147)
T d1xjsa_ 44 RIRLTMKLDGDIVEDAKFEG----EG--------------------CSISMA----SASMMTQAIKGKDIETALSMSKI 94 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEE----ES--------------------SHHHHH----HHHHHHHHHTTSBHHHHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 89999998588137877664----24--------------------578888----99999999828989999999999
No 12
>d1jroa3 d.87.2.1 (A:346-462) Xanthine dehydrogenase chain A, domain 4 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=54.86 E-value=4.9 Score=16.21 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=27.6
Q ss_pred EEEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHHHH
Q ss_conf 999998399899999880411------57889874098987855
Q gi|254780855|r 25 RLILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQAV 62 (396)
Q Consensus 25 ~~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~da~ 62 (396)
=+.++++|++|.++++..|.+ ....|..|.|+++.+..
T Consensus 22 A~~~~~~~~~i~~~ria~G~v~~~P~r~~~~e~~L~gk~~~~~~ 65 (117)
T d1jroa3 22 CLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDT 65 (117)
T ss_dssp EEEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTSBCSHHH
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEHHHHHHHHCCCCCCHHH
T ss_conf 58999758956789998424587576569999997068887678
No 13
>d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=53.08 E-value=5.2 Score=16.02 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=22.6
Q ss_pred EEEEEECCEEEEEEEEECCC------HHHHHHHHCCCCHHH
Q ss_conf 99998399899999880411------578898740989878
Q gi|254780855|r 26 LILELDGEIVERVDPHIGLL------HRGTEKLIETKTFLQ 60 (396)
Q Consensus 26 ~~~~v~~~~V~~a~~~~g~~------~RGfE~il~Gr~~~d 60 (396)
+.+.+||++|.++++..|.+ ....|+.|.|+.+.+
T Consensus 23 ~~~~~d~g~i~~~ria~ggv~~~p~r~~~~e~~L~g~~~~~ 63 (109)
T d1n62c1 23 VVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDK 63 (109)
T ss_dssp EEEEEETTEEEEEEEEEESSSSSCEECHHHHHHHTTSCCCH
T ss_pred EEEEEECCEEEEEEEEEECCCCEEEEHHHHHHHHCCCCCHH
T ss_conf 48999699099999999756671552677788870775106
No 14
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.22 E-value=6.3 Score=15.41 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCEEEEEEEECCEEEEEEEEECCCH----HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 7559999983998999998804115----788987409898785544312123448889999999999983885788899
Q gi|254780855|r 22 GVLRLILELDGEIVERVDPHIGLLH----RGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQ 97 (396)
Q Consensus 22 g~l~~~~~v~~~~V~~a~~~~g~~~----RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~ 97 (396)
|.+.+.+.|++|+|.++.+-.-.+. .-+|..|.|.++. ..++..+=+.+.++-|....
T Consensus 16 G~ve~~l~V~~G~I~~~~i~gDfl~~~~i~~le~~L~G~~y~------------------~~~i~~~l~~~~~~~~~~~~ 77 (91)
T d1x2ga1 16 GGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYR------------------ADMLQQECEALLVDFPEQEK 77 (91)
T ss_dssp EEEEEEEEEETTEEEEEEEEECCSCCHHHHHHHHHHTTCBSS------------------HHHHHHHHHHTGGGCGGGHH
T ss_pred CEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC------------------HHHHHHHHHHHHHHCHHHHH
T ss_conf 169999997279898999986889927899999997699868------------------99999999998765876899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780855|r 98 LIRVLYS 104 (396)
Q Consensus 98 llR~Ll~ 104 (396)
.++++.-
T Consensus 78 ~l~e~~~ 84 (91)
T d1x2ga1 78 ELRELSA 84 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 15
>d1rm6b1 d.87.2.1 (B:217-323) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=42.62 E-value=6 Score=15.58 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=27.9
Q ss_pred EEEEEEEECCEEEEEEEEECCC----HHHHHHHHCCCCHHH
Q ss_conf 5999998399899999880411----578898740989878
Q gi|254780855|r 24 LRLILELDGEIVERVDPHIGLL----HRGTEKLIETKTFLQ 60 (396)
Q Consensus 24 l~~~~~v~~~~V~~a~~~~g~~----~RGfE~il~Gr~~~d 60 (396)
.-+.+.+||++|.++++..|.+ .|--|..|.|+.+.+
T Consensus 22 vAv~~~~~~g~i~~~ria~ggv~~~P~r~~e~~l~G~~~~~ 62 (107)
T d1rm6b1 22 VAAALQRDGDRIAGLRVAITGSNSAPLMVPVDALLGGNWDD 62 (107)
T ss_dssp EEEEEEEETTEEEEEEEEEESSSSSCEECCCGGGTTSCCSH
T ss_pred HHHEEEECCCCEEEEEEEEECCCCCEEEHHHHHHCCCCCCC
T ss_conf 75238974996889999860567812540765754898881
No 16
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.59 E-value=6.5 Score=15.31 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999988999874
Q gi|254780855|r 106 IGRILSHLLNVTT 118 (396)
Q Consensus 106 ~e~i~sH~~h~~~ 118 (396)
-+++|||++|+-.
T Consensus 27 d~rvqshilhleh 39 (48)
T d1ufia_ 27 DDRVQSHILHLEH 39 (48)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 4899988988520
No 17
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=37.90 E-value=8.7 Score=14.45 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCEEEEEEEEC-CEEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHHH
Q ss_conf 75599999839-9899999880411578----------898740989878554431
Q gi|254780855|r 22 GVLRLILELDG-EIVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYFD 66 (396)
Q Consensus 22 g~l~~~~~v~~-~~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it~ 66 (396)
-.+++.+.|++ ++|+++.+.. .| +=.+++||+..++..|+.
T Consensus 35 D~i~i~l~v~~~~~I~di~F~~----~GC~is~AsaS~~tel~~Gkt~~ea~~i~~ 86 (130)
T d1wfza_ 35 DVMKLQIQVDEKGKIVDARFKT----FGCGSAIASSSLATEWVKGKTVEEALTIKN 86 (130)
T ss_dssp EEEEEEEEECSSSBEEEEEEEC----CSCHHHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred CEEEEEEEECCCCEEEEEEEEE----ECCCHHHHHHHHHHHHHHCCCHHHHHHCCC
T ss_conf 5899999955899398999984----278354779999999986168899873173
No 18
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=36.57 E-value=9.1 Score=14.31 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=34.4
Q ss_pred CEEEEEEEECCEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 55999998399899999880411578898740989878554431212344888999999999998388578889999999
Q gi|254780855|r 23 VLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVL 102 (396)
Q Consensus 23 ~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~gi~vp~~a~llR~L 102 (396)
-+++.+.+++++|+++.+.. +| |++|-. +++...|.+-|..+.....+...+
T Consensus 38 ~i~i~l~i~~~~I~di~f~~----~G--------------------Cai~~A----Sasil~e~i~gk~~~e~~~l~~~~ 89 (136)
T d1su0b_ 38 VISLTVKFDEDKIEDIAFAG----NG--------------------CTISTA----SSSMMTDAVIGKSKEEALALADIF 89 (136)
T ss_dssp EEEEEEEESSSSEEEEEEEE----EC--------------------CHHHHH----HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EEEEEEEECCCEEEEEEEEE----CC--------------------CHHHHH----HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999997588146778775----16--------------------779899----999999999578999999999999
No 19
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=35.81 E-value=9.4 Score=14.23 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=28.1
Q ss_pred CEEEEEEEECC-EEEEEEEEECCCHHH----------HHHHHCCCCHHHHHHHH
Q ss_conf 55999998399-899999880411578----------89874098987855443
Q gi|254780855|r 23 VLRLILELDGE-IVERVDPHIGLLHRG----------TEKLIETKTFLQAVPYF 65 (396)
Q Consensus 23 ~l~~~~~v~~~-~V~~a~~~~g~~~RG----------fE~il~Gr~~~da~~it 65 (396)
-++|.+.++++ .|+|+.+.. +| +=.+++|++..+|..|+
T Consensus 40 ~v~i~l~i~~~~~I~di~f~~----~GCais~Asas~~~e~i~Gkt~~ea~~i~ 89 (134)
T d1r9pa_ 40 VMQLQIKVDDNGIIEDAKFKT----YGCGSAIASSSLITEWVKGKSLEEAGAIK 89 (134)
T ss_dssp EEEEEEEECSSSBEEEEEEEE----ESSSSHHHHHHHHHHHSSSSBHHHHTTSH
T ss_pred EEEEEEEECCCCEEEEEEEEE----CCCCCCHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 799999976985277788983----06860076999999999727898999850
No 20
>d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=35.01 E-value=9.6 Score=14.14 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8987409898785544312123448889999999999983
Q gi|254780855|r 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396)
Q Consensus 49 fE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396)
|...++|+++.+...+..++....+..+ ++.-|+|.|+
T Consensus 70 ~~p~l~g~~~~~~~~~~~~l~~~~~~~~--~a~aaid~Al 107 (125)
T d1jpma2 70 LKPALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMAL 107 (125)
T ss_dssp HHHHHTTCBGGGHHHHHHHHHHSSSSCH--HHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCC--HHHHHHHHHH
T ss_conf 7766515671259999998666505863--8999999999
No 21
>d2ntka1 d.153.2.1 (A:1-202) Hypothetical protein MTH1020 {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=29.58 E-value=6.9 Score=15.15 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=6.4
Q ss_pred HHHHHCCCCCCHHH
Q ss_conf 99997088057599
Q gi|254780855|r 368 MEFLCKGHQLADVS 381 (396)
Q Consensus 368 ~e~al~G~~i~D~~ 381 (396)
-+.++-|.++.++|
T Consensus 167 a~~~~dg~~~~~FE 180 (202)
T d2ntka1 167 AEFILKGGEFAAFT 180 (202)
T ss_dssp HHHHHHSGGGGGSC
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99875679650137
No 22
>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]}
Probab=28.48 E-value=12 Score=13.41 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHH
Q ss_conf 9898785544312--12344888999999999998388578889-9999999999999988
Q gi|254780855|r 55 TKTFLQAVPYFDR--LDYVAPMNQEHAYALAVEKLLGIEIPIRG-QLIRVLYSEIGRILSH 112 (396)
Q Consensus 55 Gr~~~da~~it~R--ICGIC~~aH~~Aa~~AiE~a~gi~vp~~a-~llR~Ll~~~e~i~sH 112 (396)
|.++.+...=+.- --|+-|.. .+--+.++|+.||+++|+.. .-++.+-....+|++|
T Consensus 16 ~i~~~~i~~~~~l~~dLg~DSl~-~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~ 75 (77)
T d1t8ka_ 16 GVKQEEVTNNASFVEDLGADSLD-TVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75 (77)
T ss_dssp TCCGGGCCTTCBTTTTTCCCHHH-HHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred CCCHHHCCCCCCCHHCCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf 88987769998601202446248-9999999999868998999987189999999999876
No 23
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=26.82 E-value=13 Score=13.22 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=20.2
Q ss_pred CEEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 117999998799808899983587568
Q gi|254780855|r 338 GEFGVYLISDGGNKPYRCKIRAPGYAH 364 (396)
Q Consensus 338 G~L~H~~~~~~~g~i~~~~ii~PT~~N 364 (396)
|.....+.++++|+|.+++|+-.|-.+
T Consensus 25 G~V~v~f~I~~~G~v~~~~v~~ssg~~ 51 (90)
T d1u07a_ 25 GQVKVKFDVTPDGRVDNVQILSAKPAN 51 (90)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEESSS
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCH
T ss_conf 799999999389989689999888965
No 24
>d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=26.45 E-value=13 Score=13.17 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8987409898785544312123448889999999999983
Q gi|254780855|r 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLL 88 (396)
Q Consensus 49 fE~il~Gr~~~da~~it~RICGIC~~aH~~Aa~~AiE~a~ 88 (396)
+...|.|+++.+...+.++++.-+... -.+.-|+|.|+
T Consensus 71 l~p~lig~~~~~~~~~~~~~~~~~~~~--~~A~aaid~Al 108 (126)
T d2chra2 71 LAPHLLGTDAFNVSGALQTMARAVTGN--ASAKAAVEMAL 108 (126)
T ss_dssp THHHHTTSCTTCHHHHHHHHHTTCSSC--HHHHHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCC--HHHHHHHHHHH
T ss_conf 450101346012999999865302443--28899999999
No 25
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.94 E-value=14 Score=12.99 Aligned_cols=67 Identities=13% Similarity=-0.063 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHH---------------HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 9988999874334---------------3056418999999999999789975597647633653620007898999999
Q gi|254780855|r 109 ILSHLLNVTTQAM---------------DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDI 173 (396)
Q Consensus 109 i~sH~~h~~~l~~---------------~~~~~~~~~~~~~~r~~~~~~~~~~gG~~~Hp~~~vpGGv~~~~~~~~~~~~ 173 (396)
+|||+-|++.|.. .+|....-..+...-++..+.+...+.-.+-.+.-+==.+-++-.++..+..
T Consensus 46 VHSh~~Hl~al~~~a~~~gv~~V~iH~~~DGRDt~p~s~~~~l~~l~~~~~~~~~~~IASv~GRyyaMDRD~rWeR~~~a 125 (234)
T d1o98a1 46 VHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKA 125 (234)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHHTCCEEEEEEEHHHHTCCSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEECCCCCCHHHHHHH
T ss_conf 33415778999999997088741789973377888246899999999975314643687760643421555668899999
Q ss_pred HH
Q ss_conf 99
Q gi|254780855|r 174 GC 175 (396)
Q Consensus 174 ~~ 175 (396)
..
T Consensus 126 y~ 127 (234)
T d1o98a1 126 YR 127 (234)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 26
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=21.32 E-value=16 Score=12.51 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=27.5
Q ss_pred EEEEEEEECC--EEEEEEEEE-C-C------CHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 5999998399--899999880-4-1------15788987409898785544312123
Q gi|254780855|r 24 LRLILELDGE--IVERVDPHI-G-L------LHRGTEKLIETKTFLQAVPYFDRLDY 70 (396)
Q Consensus 24 l~~~~~v~~~--~V~~a~~~~-g-~------~~RGfE~il~Gr~~~da~~it~RICG 70 (396)
.-++++.|++ ..-.+.... + + +.+.|...+.|++|.+...+-+++--
T Consensus 34 ~~V~i~td~g~~g~G~~~~~~~~~~~~~~~~~~~~l~p~liG~~~~~~~~~~~~~~~ 90 (139)
T d1yeya2 34 AYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFAR 90 (139)
T ss_dssp EEEEEEESSCTTCEEEEEEEECSTTHHHHHHHHHTTHHHHTTCBHHHHHHCHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 589999989995799998706787179999999999998518772128888999998
No 27
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=20.95 E-value=17 Score=12.46 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCHHHHHHHHCC
Q ss_conf 686866677559999983998999998804115788987409
Q gi|254780855|r 14 GPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIET 55 (396)
Q Consensus 14 gp~~~~~~g~l~~~~~v~~~~V~~a~~~~g~~~RGfE~il~G 55 (396)
|-+. ...|..++++.++|+..+-|.++ |-|-+.--+++.|
T Consensus 10 G~V~-e~lg~~~f~V~l~ng~~~~a~i~-Gkmrk~ri~i~~G 49 (71)
T d1ah9a_ 10 GTVL-ETLPNTMFRVELENGHVVTAHIS-GKMRKNYIRILTG 49 (71)
T ss_dssp EEEE-EECSSSEEEEEETTSCEEEEEEC-SSGGGTTCCCCTT
T ss_pred EEEE-EECCCCEEEEEECCCCEEEEECC-CHHHEEEEEECCC
T ss_conf 9999-98699889999679979999846-4343027996499
Done!