BLAST/PSIBLAST alignment of GI: 254780855 and GI: 116251469 at iteration 1
>gi|116251469|ref|YP_767307.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. viciae 3841] Length = 396
>gi|218534452|sp|Q1MIL2|NUOD_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D Length = 396
>gi|115256117|emb|CAK07198.1| putative NADH-quinone oxidoreductase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 396
 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/396 (84%), Positives = 370/396 (93%)

Query: 1   MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
           M +   R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1   MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60

Query: 61  AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
           AVPYFDRLDYVAPMNQEHAYA+AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61  AVPYFDRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120

Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
           MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPEQLVQDIGAWCDPF 180

Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
             AL+DI +LLTGNRIFKQRNV+IG V L++ W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLDECWAWGFSGVMVRGSGAAWDLRRAQPYECY 240

Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
           S+L+FDIPIGK+GD YDRYL+RM+EMRESV+I++QCVNRLL   K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300

Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
           R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360

Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
           GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396