BLAST/PSIBLAST alignment of GI: 254780855 and GI: 116251469 at iteration 1
>gi|116251469|ref|YP_767307.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. viciae 3841] Length = 396
>gi|218534452|sp|Q1MIL2|NUOD_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D Length = 396
>gi|115256117|emb|CAK07198.1| putative NADH-quinone oxidoreductase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 396
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/396 (84%), Positives = 370/396 (93%)
Query: 1 MDKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQ 60
M + R+F INFGPQHPAAHGVLRL+LELDGEIVERVDPHIGLLHRGTEKLIETKT+LQ
Sbjct: 1 MTEHNVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQ 60
Query: 61 AVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
AVPYFDRLDYVAPMNQEHAYA+AVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA
Sbjct: 61 AVPYFDRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQA 120
Query: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSF 180
MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQD+P +LV+DIG WCD F
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPEQLVQDIGAWCDPF 180
Query: 181 PSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECY 240
AL+DI +LLTGNRIFKQRNV+IG V L++ W WGFSGVM+RGSGAAWDLR++QPYECY
Sbjct: 181 LKALDDIDNLLTGNRIFKQRNVDIGVVSLDECWAWGFSGVMVRGSGAAWDLRRAQPYECY 240
Query: 241 SELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPK 300
S+L+FDIPIGK+GD YDRYL+RM+EMRESV+I++QCVNRLL K GP S+ D K+VPPK
Sbjct: 241 SDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRLLSDAKTGPFSSIDGKVVPPK 300
Query: 301 RADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP 360
R +MKRSME+LIHHFKLYTEGYHVP GEVYAAVEAPKGEFGVYL+SDG NKPYRCKIRAP
Sbjct: 301 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 360
Query: 361 GYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
GYAHLQAM+F+C+GHQLADV+A+LGSLDIVFGEVDR
Sbjct: 361 GYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396