RPSBLAST alignment of GI: 254780855 and MMDB domain: 1yq9_H_56-492

>1yq9_H (H:56-492) Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}Length = 437

 Score =  194 bits (492), Expect = 2e-50
 Identities = 35/329 (10%), Positives = 68/329 (20%), Gaps = 36/329 (10%)

Query: 46  HRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSE 105
                        +Q         + A         +          P R    R LY E
Sbjct: 134 DLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKE 193

Query: 106 IGRILSHLLNVTTQAMD---VGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVH 162
           +   +  +      A+                         E    SR        G   
Sbjct: 194 VREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDL 253

Query: 163 QDIPPELVEDIG-----CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGF 217
             +     + I       W +   +              F   +                
Sbjct: 254 SKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFE 313

Query: 218 SGVMIRGSGAAWDLRKSQPYECYSELD-FDIPIGKHGDCYDRYLVRMMEMRESVKIIRQC 276
            G +     A     +         L    +          R   R ++   + + +   
Sbjct: 314 VGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVW 373

Query: 277 VNRLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAP 336
           +++L    K                               LYT+  +    +    V AP
Sbjct: 374 LDKLEANVK--------------------------AGKDDLYTDWQYPTESQGVGFVNAP 407

Query: 337 KGEFGVYLISDGGNKPYRCKIRAPGYAHL 365
           +G    +++  GG K    ++  P   +L
Sbjct: 408 RGMLSHWIVQRGG-KIENFQLVVPSTWNL 435