RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1cc1

>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfovibrio baculatus} SCOP: e.18.1.1 Length = 498
 Score =  197 bits (502), Expect = 3e-51
 Identities = 68/456 (14%), Positives = 124/456 (27%), Gaps = 98/456 (21%)

Query: 21  HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
            G L++ +E+    V       G + RG E+++  +    +     R+  V P     A 
Sbjct: 23  EGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTAS 81

Query: 81  ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLN------------------------- 115
            +A +   G+++   G++ R L      + SH+L+                         
Sbjct: 82  VMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANA 141

Query: 116 ----------VTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDI 165
                         A +   L   L   E R           G   H      GG  +  
Sbjct: 142 DLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIP 201

Query: 166 PPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWG--------- 216
             + V +           + +    L         ++    +  ++   +G         
Sbjct: 202 TADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAFGVFPEDDDYK 261

Query: 217 ----FSGVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYD--------------- 257
                 GV I G    +D +  + Y  +S  D   P G H    +               
Sbjct: 262 TFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVK 321

Query: 258 --RYLVRMMEMRESVKIIRQC-----VNRLLGKNKVGPVSASDPKIVPPKRADMKR---- 306
             RY  +  E+    ++  Q      V + L K   G  +     +     + M R    
Sbjct: 322 APRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLR 381

Query: 307 ---------SMESLIHHFKLYTEGYHVPV----GEVYAAVEAPKGEFGVYLISDGGNKPY 353
                    ++E  +   +   E Y         E     EAP+G    YL      K  
Sbjct: 382 AEETWLTAVAVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKDK-KIE 440

Query: 354 RCKIRAP---------GYAHLQAMEFLCKGHQLADV 380
             +I +                 +E    G  + D+
Sbjct: 441 NYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDI 476