RPSBLAST alignment of GI: 254780855 and protein with PDBid: 1yq9

>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B Length = 536

 Score =  111 bits (278), Expect = 3e-25
 Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 28/221 (12%)

Query: 21  HGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAY 80
            G LR+ +E++G  ++        L RG E +++ +    A  +  R   V       A 
Sbjct: 18  EGHLRIEVEVEGGKIKNAWSM-STLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALAS 76

Query: 81  ALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMD------------------ 122
             AV+  +G++IP    L+R L      +  HL++                         
Sbjct: 77  VRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAAR 136

Query: 123 -VGALTPPLWGFEE----REKLMVFYERASGSRMHAAYFRPGGVHQDIPPEL---VEDIG 174
               L+P     E     + K+    E         AYF  G     +P E+        
Sbjct: 137 LANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHY 196

Query: 175 CWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGW 215
                          +        Q  V +G     D+   
Sbjct: 197 LEALRVQVKAARAMAIFGAKNPHTQFTV-VGGCTNYDSLRP 236