RPSBLAST alignment of GI: 254780855 and protein with PDBid: 3i9v
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* Length = 409
Score = 391 bits (1004), Expect = e-109
Identities = 180/395 (45%), Positives = 257/395 (65%), Gaps = 4/395 (1%)
Query: 2 DKKKSRSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQA 61
+ ++ T+N GPQHP+ HGVLRL++ L GE V V PHIG LH G EK +E +T+LQ
Sbjct: 19 KELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQN 78
Query: 62 VPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAM 121
+ Y R+DY+ + AYALAVEKLLG +P R + IRV+ +E+ R+ SHL+ + T +
Sbjct: 79 ITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLL 138
Query: 122 DVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPELVEDIGCWCDSFP 181
D+GALTP + F ERE ++ +E +G R H Y R GGV +D+P E V ++ + P
Sbjct: 139 DLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLP 198
Query: 182 SALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGSGAAWDLRKSQPYECYS 241
+++ L + IF +R +G + E A G +G +R SG +D+RK+ PY Y
Sbjct: 199 HRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYE 258
Query: 242 ELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLLGKNKVGPVSASDPKIVPPKR 301
FD+P+G+ GD +DR LVR+ EMRESVKII+Q + RL + GPV +P+I PP R
Sbjct: 259 TYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERL----EPGPVRDPNPQITPPPR 314
Query: 302 ADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAPG 361
++ SME++I+HFK YTEG+H P GEVY E+ +GE G Y++SDGG+ PYR K+RAP
Sbjct: 315 HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPS 374
Query: 362 YAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
+ +LQ++ + CKG Q+ D+ AI+ SLD V G+VDR
Sbjct: 375 FVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409