RPSBLAST alignment of GI: 254780855 and SCOP domain: d1yq9h1

Alignment

 Score =  117 bits (293), Expect = 2e-27
 Identities = 55/444 (12%), Positives = 108/444 (24%), Gaps = 80/444 (18%)

Query: 18  PAAHGVLRLILELDGEIVERVDPHI---GLLHRGTEKLIETKTFLQAVPYFDRLDYVAPM 74
             A  +  L +       + +  H+     LH      +               + ++P 
Sbjct: 84  ENATLMRNLTMGA-----QYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPR 138

Query: 75  NQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFE 134
                   AV+  +   +   GQL   +++    +  H   V    +D+ A    L    
Sbjct: 139 KTTTESLKAVQAKVK-ALVESGQLG--IFTNAYFLGGHPAYVLPAEVDLIATAHYLEALR 195

Query: 135 EREKLMVFYERASGSRMHAAYFRPGGVHQDIP--PELVEDIGCWCDSFPSALNDIS---- 188
            + K             H  +   GG        PE + +           +  +     
Sbjct: 196 VQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDL 255

Query: 189 -----------------------DLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVMIRGS 225
                                  +  T       R    G +   D          +   
Sbjct: 256 LAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEE 315

Query: 226 GAAWDLRK----SQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
              +   +      PY+  ++  +    G+    + +      E  E   +    V    
Sbjct: 316 HVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAK 375

Query: 282 G-------------KNKVGPVSASDPKIVPPKRAD-MKRSMESLIHHF------------ 315
                            VGP +          R      + + +                
Sbjct: 376 KHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKD 435

Query: 316 KLYTEGYHVPVGEVYAAVEAPKGEFGVYLISDGGNKPYRCKIRAP---------GYAHLQ 366
            LYT+  +    +    V AP+G    +++  GG K    ++  P             L 
Sbjct: 436 DLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRGG-KIENFQLVVPSTWNLGPRCAEGKLS 494

Query: 367 AMEFLCKGHQLADVSAILGSLDIV 390
           A+E    G  +AD    +  L  V
Sbjct: 495 AVEQALIGTPIADPKRPVEILRTV 518

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydB/Nqo4-like
superfamily: HydB/Nqo4-like
family: Nickel-iron hydrogenase, large subunit
domain: Nickel-iron hydrogenase, large subunit
species: Desulfovibrio gigas [TaxId: 879]