HHsearch alignment for GI: 254780856 and conserved domain: PRK12373
>PRK12373 NADH dehydrogenase subunit E; Provisional.
Probab=100.00 E-value=0 Score=507.03 Aligned_cols=204 Identities=69% Similarity=1.158 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 75257876679998565899999999999867843213369999999999826689999999998508879999999976
Q gi|254780856|r 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 (218)
Q Consensus 2 ~~~~~~~~~~~p~~f~fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTF 81 (218)
T Consensus 1 ~~rrl~~~--QP~sF~Ft~en~~~a~~~iakYPegrk~SAviPlL~lAQeq~GWls~~ai~~VA~~L~mp~irV~EVATF 78 (403)
T PRK12373 1 MLRRLHED--QPASFAFTPENQAWAEKQITKYPEGRQASAVIPLLMRAQEQEGWVTRAAIEKVADMLGMAYIRVLEVATF 78 (403)
T ss_pred CCCCCCCC--CCCCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEEEEEH
T ss_conf 97554232--8976708999999999999868874005079999999998759989999999999839980216775457
Q ss_pred HHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCC
Q ss_conf 44320222787069996188358770892489999988275647517788189995324566778867998583414588
Q gi|254780856|r 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 (218)
Q Consensus 82 Y~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt 161 (218)
T Consensus 79 YtMF~lkPVG~~~hIqVC~ttpC~LrGsd~l~~~~k~kLgi~~getT~DG~FTl~EVECLGAC~nAPmvQIndDyYEdLT 158 (403)
T PRK12373 79 YTQFQLQPVGTRAHIQVCGTTPCMLRGSEALMAVCKEKIHADPHELNADGTLSWEEVECLGACVNAPMVQIGKDYYEDLT 158 (403)
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
T ss_conf 55425656766479984289602467899999999998489999658998768688678342588983787773235499
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9899999999982889998748847864336778852112487766
Q gi|254780856|r 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207 (218)
Q Consensus 162 ~e~~~~il~~Lr~gk~~~~k~g~~~~r~~~~~~~G~~tll~~~~~~ 207 (218)
T Consensus 159 pE~~~~ilD~l~aGk~~~p~pGpq~gR~~seP~gG~TsLte~~~~~ 204 (403)
T PRK12373 159 PERLEEIIDTFAAGKGAVPKPGPQNGRYASEPAGGLTSLTEEDAGK 204 (403)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 9999999999974998999999978764558799976153431476