HHsearch alignment for GI: 254780856 and conserved domain: cd03064

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=99.91  E-value=2.4e-24  Score=185.19  Aligned_cols=80  Identities=44%  Similarity=0.811  Sum_probs=78.4

Q ss_pred             CEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHH
Q ss_conf             06999618835877089248999998827564751778818999532456677886799858341458898999999999
Q gi|254780856|r   93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF  172 (218)
Q Consensus        93 k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~~L  172 (218)
T Consensus         1 k~~I~VC~~~~C~~~G~~~l~~~l~~~lgi~~gett~Dg~~~l~~~~ClG~C~~aP~v~In~~~~~~vt~e~v~~ii~~l   80 (80)
T cd03064           1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMINDDVYGRLTPEKVDAILEAL   80 (80)
T ss_pred             CCEEEECCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHC
T ss_conf             92999669974554898899999999768778855789888999623348678999799999987788999999999739