HHsearch results for GI: 254780856 and protein with PDBid: 3i9v_2

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=100.00  E-value=0  Score=375.22  Aligned_cols=162  Identities=32%  Similarity=0.677  Sum_probs=156.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             56589999999999986784321336999999999982668999999999850887999999997644320222787069
Q gi|254780856|r   16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH   95 (218)
Q Consensus        16 f~fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~   95 (218)
                      +.|+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|++|+++||+|||||+||+++|+| ||+
T Consensus         1 m~~~~~~~~~i~~ii~~Yp~~~~r~all~~L~~iQ~~~GyIp~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~   79 (181)
T 3i9v_2            1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYH   79 (181)
T ss_dssp             --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCC-SEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-CEE
T ss_conf             9988889999999998788864776999999999998299099999999999892999999999762502358898-868


Q ss_pred             EEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHC
Q ss_conf             99618835877089248999998827564751778818999532456677886799858341-45889899999999982
Q gi|254780856|r   96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST  174 (218)
Q Consensus        96 I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~  174 (218)
                      |+||++++|+++|+++|+++++++|||+.|+||+||+|||++++|||+|++||+|+||++.| ++||++++++||+.||+
T Consensus        80 i~VC~~~~C~~~Ga~~l~~~l~~~Lgi~~gett~Dg~ftle~~~ClG~C~~AP~v~Vn~~~y~~~lt~e~~~~il~~lr~  159 (181)
T 3i9v_2           80 LQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRA  159 (181)
T ss_dssp             EEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEECCCCEEEECCEEECCCCCHHHHHHHHHHHHC
T ss_conf             99559768775788689999999819999967899868764221768607898499989873587999999999999986


Q ss_pred             CCCC
Q ss_conf             8899
Q gi|254780856|r  175 GQGD  178 (218)
Q Consensus       175 gk~~  178 (218)
                      |+..
T Consensus       160 g~~~  163 (181)
T 3i9v_2          160 GKRL  163 (181)
T ss_dssp             TCCG
T ss_pred             CCCC
T ss_conf             9999