Query gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 218
No_of_seqs 125 out of 1281
Neff 5.3
Searched_HMMs 23785
Date Tue May 31 21:57:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780856.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_2 NADH-quinone oxidoreduc 100.0 0 0 375.2 17.1 162 16-178 1-163 (181)
2 2auv_A Potential NAD-reducing 99.9 4E-26 1.7E-30 195.6 3.6 85 87-172 1-85 (85)
3 1m2d_A [2Fe-2S] ferredoxin; th 99.4 1.1E-13 4.7E-18 112.0 3.8 82 92-177 3-95 (110)
4 2q24_A Putative TETR family tr 77.3 2 8.2E-05 23.0 3.6 45 37-89 15-59 (194)
5 2v57_A TETR family transcripti 72.5 2.3 9.5E-05 22.6 2.9 43 37-88 14-56 (190)
6 2rek_A Putative TETR-family tr 70.7 2.3 9.7E-05 22.6 2.6 44 38-89 17-60 (199)
7 3m6z_A Topoisomerase V; helix- 70.1 3.3 0.00014 21.5 3.3 61 20-87 164-231 (380)
8 3gha_A Disulfide bond formatio 69.0 2.8 0.00012 21.9 2.8 94 41-178 99-196 (202)
9 2qwt_A Transcriptional regulat 68.3 3.9 0.00016 21.0 3.4 40 39-86 15-54 (196)
10 3jsj_A Putative TETR-family tr 65.3 5.3 0.00022 20.1 3.6 43 38-88 10-52 (190)
11 2rae_A Transcriptional regulat 62.2 7 0.00029 19.3 3.7 45 38-89 18-62 (207)
12 3cwr_A Transcriptional regulat 61.4 4 0.00017 20.9 2.4 43 39-88 19-61 (208)
13 2csb_A Topoisomerase V, TOP61; 61.4 4.8 0.0002 20.4 2.8 61 20-87 164-231 (519)
14 1t33_A Putative transcriptiona 59.3 5.7 0.00024 19.9 2.8 42 39-88 14-55 (224)
15 3lwj_A Putative TETR-family tr 58.9 5.6 0.00023 20.0 2.7 44 39-89 14-57 (202)
16 2djn_A Homeobox protein DLX-5; 58.3 10 0.00043 18.2 4.0 34 43-76 19-52 (70)
17 3f1b_A TETR-like transcription 57.6 6 0.00025 19.7 2.7 44 38-88 15-58 (203)
18 1ig7_A Homeotic protein MSX-1; 57.1 11 0.00046 18.0 4.9 33 43-75 12-44 (58)
19 3nrg_A TETR family transcripti 56.0 3.7 0.00016 21.1 1.5 51 31-89 8-58 (217)
20 1ftt_A TTF-1 HD, thyroid trans 55.9 11 0.00048 17.9 4.9 33 43-75 14-46 (68)
21 3hta_A EBRA repressor; TETR fa 55.6 6.6 0.00028 19.5 2.7 43 39-88 30-72 (217)
22 2of7_A Putative TETR-family tr 55.4 8.1 0.00034 18.9 3.1 43 39-88 50-92 (260)
23 1b8i_A Ultrabithorax, protein 55.2 12 0.00049 17.8 4.8 35 42-76 31-65 (81)
24 2dmq_A LIM/homeobox protein LH 54.9 12 0.0005 17.8 5.0 33 44-76 20-52 (80)
25 2e19_A Transcription factor 8; 54.1 12 0.00051 17.7 4.0 35 42-76 14-48 (64)
26 2e1o_A Homeobox protein PRH; D 54.0 12 0.00052 17.7 4.9 33 43-75 19-51 (70)
27 2da7_A Zinc finger homeobox pr 53.9 12 0.00052 17.7 4.8 35 42-76 16-50 (71)
28 3cdl_A Transcriptional regulat 53.5 7.7 0.00032 19.0 2.7 44 38-88 10-53 (203)
29 2vt3_A REX, redox-sensing tran 52.8 12 0.0005 17.8 3.6 63 44-124 21-84 (215)
30 2fq4_A Transcriptional regulat 52.8 9.4 0.00039 18.5 3.1 44 38-88 13-56 (192)
31 2vi6_A Homeobox protein nanog; 52.5 13 0.00054 17.5 4.8 34 43-76 15-48 (62)
32 2zb9_A Putative transcriptiona 52.4 8.8 0.00037 18.6 2.9 43 39-88 25-67 (214)
33 2dmt_A Homeobox protein BARH-l 52.2 13 0.00055 17.5 4.8 33 43-75 29-61 (80)
34 2dmu_A Homeobox protein goosec 52.0 13 0.00055 17.5 4.8 34 43-76 19-52 (70)
35 2o7t_A Transcriptional regulat 51.7 7.8 0.00033 19.0 2.5 11 165-175 177-187 (199)
36 2h1k_A IPF-1, pancreatic and d 51.5 13 0.00057 17.4 4.8 34 43-76 15-48 (63)
37 2nx4_A Transcriptional regulat 51.2 8.9 0.00037 18.6 2.8 44 38-88 11-54 (194)
38 2gfn_A HTH-type transcriptiona 51.2 8.9 0.00038 18.6 2.8 45 38-89 10-54 (209)
39 2dn0_A Zinc fingers and homeob 50.5 14 0.00059 17.3 4.3 34 43-76 20-53 (76)
40 2k40_A Homeobox expressed in E 50.2 14 0.00059 17.3 4.0 33 43-75 13-45 (67)
41 3lhq_A Acrab operon repressor 50.0 11 0.00046 18.0 3.1 43 39-88 16-58 (220)
42 3b81_A Transcriptional regulat 49.8 13 0.00055 17.5 3.4 45 38-89 12-56 (203)
43 2da1_A Alpha-fetoprotein enhan 49.7 14 0.0006 17.2 4.0 34 43-76 19-52 (70)
44 1akh_A Protein (mating-type pr 49.1 15 0.00061 17.2 4.9 34 43-76 17-50 (61)
45 3he0_A Transcriptional regulat 48.9 13 0.00053 17.6 3.2 44 38-88 12-55 (196)
46 3a02_A Homeobox protein arista 48.9 15 0.00062 17.1 4.9 34 43-76 11-44 (60)
47 2cra_A Homeobox protein HOX-B1 48.8 15 0.00062 17.1 4.9 34 43-76 19-52 (70)
48 1bw5_A ISL-1HD, insulin gene e 48.7 15 0.00062 17.1 5.0 34 43-76 15-48 (66)
49 3mvp_A TETR/ACRR transcription 48.7 10 0.00044 18.1 2.8 42 40-88 29-70 (217)
50 2da2_A Alpha-fetoprotein enhan 48.4 15 0.00063 17.1 4.8 33 43-75 19-51 (70)
51 3a03_A T-cell leukemia homeobo 48.1 15 0.00064 17.1 4.8 34 43-76 9-42 (56)
52 2hyj_A Putative TETR-family tr 47.4 9.3 0.00039 18.5 2.4 42 40-88 15-56 (200)
53 2zcm_A Biofilm operon icaabcd 47.3 15 0.00062 17.1 3.4 44 38-88 8-51 (192)
54 2dg8_A Putative TETR-family tr 47.2 9.5 0.0004 18.4 2.4 39 41-86 13-51 (193)
55 2hku_A A putative transcriptio 47.2 16 0.00066 17.0 3.6 43 39-89 22-64 (215)
56 2hdd_A Protein (engrailed home 47.1 16 0.00066 17.0 4.8 34 43-76 15-48 (61)
57 2dms_A Homeobox protein OTX2; 46.9 16 0.00066 16.9 4.9 34 43-76 19-52 (80)
58 1ui5_A A-factor receptor homol 46.6 16 0.00067 16.9 3.6 43 39-88 11-53 (215)
59 2yve_A Transcriptional regulat 46.4 13 0.00055 17.5 3.0 42 39-87 6-47 (185)
60 1jgg_A Segmentation protein EV 46.3 16 0.00068 16.9 4.8 34 43-76 13-46 (60)
61 2cue_A Paired box protein PAX6 46.2 16 0.00068 16.9 4.0 33 44-76 20-52 (80)
62 1fjl_A Paired protein; DNA-bin 46.0 16 0.00068 16.8 4.8 35 42-76 29-63 (81)
63 1vi0_A Transcriptional regulat 46.0 12 0.00049 17.8 2.7 42 40-88 11-52 (206)
64 2ecb_A Zinc fingers and homeob 45.8 16 0.00069 16.8 4.9 34 43-76 23-56 (89)
65 3frq_A Repressor protein MPHR( 45.8 10 0.00044 18.2 2.4 44 38-88 9-52 (195)
66 3nau_A Zinc fingers and homeob 45.7 16 0.00069 16.8 5.0 34 43-76 16-49 (66)
67 3c2b_A Transcriptional regulat 45.5 13 0.00053 17.6 2.8 44 38-88 16-59 (221)
68 2ecc_A Homeobox and leucine zi 45.4 17 0.0007 16.8 4.9 34 43-76 15-48 (76)
69 2guh_A Putative TETR-family tr 45.3 12 0.0005 17.8 2.6 45 38-89 40-84 (214)
70 1wjk_A C330018D20RIK protein; 45.3 7.8 0.00033 19.0 1.7 77 95-175 18-97 (100)
71 3kz9_A SMCR; transcriptional r 45.2 11 0.00045 18.1 2.4 42 40-88 20-61 (206)
72 3on2_A Probable transcriptiona 45.2 8.3 0.00035 18.8 1.8 45 37-88 12-56 (199)
73 2ibd_A Possible transcriptiona 44.3 13 0.00055 17.5 2.7 41 41-88 18-58 (204)
74 3egq_A TETR family transcripti 44.1 8.6 0.00036 18.7 1.8 44 39-89 6-49 (170)
75 2gen_A Probable transcriptiona 43.9 17 0.00073 16.6 3.3 43 39-88 9-51 (197)
76 1k61_A Mating-type protein alp 43.8 18 0.00074 16.6 3.6 25 52-76 22-46 (60)
77 1zq3_P PRD-4, homeotic bicoid 43.8 18 0.00074 16.6 4.0 34 43-76 14-47 (68)
78 2eh3_A Transcriptional regulat 43.6 17 0.00071 16.7 3.2 39 42-87 7-45 (179)
79 2g7l_A TETR-family transcripti 43.4 18 0.00074 16.6 3.3 42 39-87 21-62 (243)
80 3on4_A Transcriptional regulat 43.3 14 0.0006 17.2 2.8 44 39-89 12-55 (191)
81 1r7h_A NRDH-redoxin; thioredox 43.1 9.3 0.00039 18.5 1.8 52 118-170 22-74 (75)
82 1sfx_A Conserved hypothetical 42.9 18 0.00076 16.5 4.2 51 23-80 6-56 (109)
83 2dg7_A Putative transcriptiona 42.6 17 0.00073 16.7 3.1 45 38-89 8-52 (195)
84 2dmp_A Zinc fingers and homeob 42.5 18 0.00077 16.5 4.8 34 43-76 25-58 (89)
85 3dcf_A Transcriptional regulat 42.3 16 0.00069 16.8 3.0 43 39-88 33-75 (218)
86 1zk8_A Transcriptional regulat 41.9 16 0.00065 17.0 2.8 43 39-88 10-52 (183)
87 2id3_A Putative transcriptiona 41.9 16 0.00069 16.8 2.9 43 39-88 42-84 (225)
88 1nk2_P Homeobox protein VND; h 41.8 19 0.00079 16.4 4.9 33 43-75 21-53 (77)
89 3gyk_A 27KDA outer membrane pr 41.8 18 0.00075 16.6 3.1 82 43-174 85-173 (175)
90 3dew_A Transcriptional regulat 41.7 14 0.00058 17.3 2.5 43 39-88 10-52 (206)
91 2g3b_A Putative TETR-family tr 41.5 11 0.00048 17.9 2.1 18 157-174 168-189 (208)
92 2kt0_A Nanog, homeobox protein 41.3 19 0.0008 16.4 4.9 35 42-76 33-67 (84)
93 1rkt_A Protein YFIR; transcrip 41.3 19 0.00079 16.4 3.1 45 38-89 13-57 (205)
94 2k9m_A RNA polymerase sigma fa 41.2 13 0.00054 17.5 2.3 47 42-91 24-70 (130)
95 3ni7_A Bacterial regulatory pr 40.5 18 0.00077 16.5 3.0 29 42-71 12-40 (213)
96 1ahd_P Antennapedia protein mu 40.4 20 0.00083 16.3 3.8 34 43-76 14-47 (68)
97 2da3_A Alpha-fetoprotein enhan 40.1 20 0.00084 16.3 5.0 34 43-76 29-62 (80)
98 2g7g_A RHA04620, putative tran 39.6 16 0.00068 16.9 2.6 42 39-89 13-54 (213)
99 3bqy_A Putative TETR family tr 39.4 18 0.00077 16.5 2.9 43 39-88 4-46 (209)
100 2i10_A Putative TETR transcrip 39.3 20 0.00086 16.2 3.6 44 39-89 13-56 (202)
101 3keo_A Redox-sensing transcrip 39.3 20 0.00086 16.2 5.2 64 44-125 20-84 (212)
102 3a01_A Homeodomain-containing 39.2 21 0.00087 16.2 4.8 33 44-76 30-62 (93)
103 2r5y_A Homeotic protein sex co 39.0 21 0.00087 16.1 4.0 35 42-76 39-73 (88)
104 3gl5_A Putative DSBA oxidoredu 38.9 21 0.00087 16.1 4.6 44 140-184 178-223 (239)
105 2iai_A Putative transcriptiona 38.8 16 0.00067 16.9 2.5 43 39-88 32-74 (230)
106 2da5_A Zinc fingers and homeob 38.5 21 0.00089 16.1 5.0 34 43-76 19-52 (75)
107 1t56_A EThr repressor; helix-t 38.4 19 0.0008 16.4 2.8 45 38-89 25-69 (216)
108 3bjb_A Probable transcriptiona 38.3 19 0.0008 16.4 2.8 43 39-88 24-66 (207)
109 2qco_A CMER; transcriptional r 38.0 7.9 0.00033 18.9 0.8 43 39-88 15-57 (210)
110 2hyt_A TETR-family transcripti 37.8 13 0.00054 17.5 1.8 43 39-88 14-56 (197)
111 3ic4_A Glutaredoxin (GRX-1); s 37.6 18 0.00076 16.5 2.6 26 145-170 66-91 (92)
112 3nar_A ZHX1, zinc fingers and 37.5 22 0.00092 16.0 4.8 34 43-76 37-70 (96)
113 3e7q_A Transcriptional regulat 37.3 13 0.00053 17.6 1.8 40 40-86 17-56 (215)
114 3bqz_B HTH-type transcriptiona 37.3 22 0.00092 16.0 3.2 40 41-88 6-46 (194)
115 3bni_A Putative TETR-family tr 37.3 22 0.00092 16.0 3.0 44 38-88 44-87 (229)
116 3gzi_A Transcriptional regulat 37.3 15 0.00063 17.1 2.1 43 40-89 20-62 (218)
117 2rem_A Disulfide oxidoreductas 37.3 22 0.00093 16.0 3.3 27 146-172 155-182 (193)
118 3o60_A LIN0861 protein; PSI, M 37.1 22 0.00093 16.0 3.2 44 39-89 21-65 (185)
119 2hi3_A Homeodomain-only protei 36.2 23 0.00096 15.9 5.1 24 54-77 26-49 (73)
120 3pas_A TETR family transcripti 36.0 13 0.00054 17.5 1.6 42 40-88 11-52 (195)
121 2oer_A Probable transcriptiona 35.4 11 0.00047 18.0 1.2 44 39-89 26-69 (214)
122 2f07_A YVDT; helix-turn-helix, 35.4 24 0.00099 15.8 3.8 45 38-89 11-55 (197)
123 3gmf_A Protein-disulfide isome 35.3 24 0.00099 15.8 3.2 30 147-176 169-200 (205)
124 3col_A Putative transcription 35.3 21 0.00087 16.1 2.6 43 39-88 12-54 (196)
125 2pz9_A Putative regulatory pro 35.1 19 0.0008 16.4 2.4 45 38-89 31-75 (226)
126 3f0c_A TETR-molecule A, transc 35.1 24 0.001 15.7 3.0 45 38-89 12-56 (216)
127 2wui_A MEXZ, transcriptional r 35.1 24 0.001 15.7 2.9 44 38-88 12-55 (210)
128 3kkc_A TETR family transcripti 35.0 16 0.00066 17.0 1.9 43 39-88 14-56 (177)
129 2qib_A TETR-family transcripti 34.8 19 0.00079 16.4 2.3 11 61-71 36-46 (231)
130 3ccy_A Putative TETR-family tr 34.4 18 0.00076 16.5 2.2 43 39-88 16-58 (203)
131 3knw_A Putative transcriptiona 34.0 25 0.001 15.6 3.1 44 39-89 16-59 (212)
132 1pb6_A Hypothetical transcript 34.0 25 0.001 15.6 3.2 43 39-88 20-62 (212)
133 2d6y_A Putative TETR family re 33.9 25 0.001 15.6 3.1 44 38-88 9-52 (202)
134 2id6_A Transcriptional regulat 33.8 14 0.00059 17.3 1.5 24 58-87 25-48 (202)
135 1ocp_A OCT-3; DNA-binding prot 33.8 25 0.001 15.6 3.7 34 43-76 20-53 (67)
136 3crj_A Transcription regulator 33.2 25 0.0011 15.5 2.9 44 39-89 16-59 (199)
137 1wi3_A DNA-binding protein SAT 32.4 26 0.0011 15.5 4.9 33 43-75 19-52 (71)
138 2d5v_A Hepatocyte nuclear fact 32.4 26 0.0011 15.5 5.0 36 41-76 107-142 (164)
139 2np3_A Putative TETR-family re 32.3 7.8 0.00033 19.0 0.0 44 38-88 31-74 (212)
140 2fbq_A Probable transcriptiona 32.2 26 0.0011 15.4 3.3 13 156-168 188-200 (235)
141 3bru_A Regulatory protein, TET 31.6 27 0.0011 15.4 3.8 45 38-89 31-75 (222)
142 1puf_A HOX-1.7, homeobox prote 31.6 27 0.0011 15.4 4.8 34 43-76 25-58 (77)
143 2np5_A Transcriptional regulat 31.2 27 0.0012 15.3 2.7 11 61-71 32-42 (203)
144 2vke_A Tetracycline repressor 30.7 28 0.0012 15.3 2.9 41 41-88 7-47 (207)
145 2hxi_A Putative transcriptiona 30.6 22 0.00091 16.0 2.1 44 39-89 31-74 (241)
146 3h93_A Thiol:disulfide interch 30.5 25 0.0011 15.5 2.4 29 146-174 152-184 (192)
147 2qko_A Possible transcriptiona 30.4 17 0.00074 16.6 1.6 53 27-88 20-72 (215)
148 3kkd_A Transcriptional regulat 30.4 14 0.00057 17.4 1.0 44 38-88 36-79 (237)
149 2iu5_A DHAS, hypothetical prot 30.2 20 0.00086 16.2 1.9 43 39-88 15-57 (195)
150 3eup_A Transcriptional regulat 30.1 17 0.00072 16.7 1.5 45 38-89 12-56 (204)
151 3lvy_A Carboxymuconolactone de 29.9 29 0.0012 15.2 6.3 42 40-86 36-78 (207)
152 3bci_A Disulfide bond protein 29.9 24 0.001 15.7 2.2 94 42-176 82-180 (186)
153 2vpr_A Tetracycline resistance 29.6 23 0.00096 15.9 2.0 39 41-86 8-46 (207)
154 3c07_A Putative TETR-family tr 29.4 29 0.0012 15.1 2.8 41 39-86 43-83 (273)
155 2ras_A Transcriptional regulat 29.2 30 0.0012 15.1 3.5 18 158-175 178-195 (212)
156 3ljl_A Transcriptional regulat 29.0 26 0.0011 15.5 2.2 43 39-88 16-58 (156)
157 1yz8_P Pituitary homeobox 2; D 28.3 19 0.00081 16.4 1.5 31 45-75 17-47 (68)
158 2oi8_A Putative regulatory pro 28.1 31 0.0013 15.0 2.5 43 39-88 18-60 (216)
159 1z67_A Hypothetical protein S4 28.1 31 0.0013 15.0 3.4 36 56-91 73-111 (135)
160 3cjd_A Transcriptional regulat 27.9 31 0.0013 15.0 3.0 43 39-88 14-56 (198)
161 1b72_A Protein (homeobox prote 27.8 31 0.0013 14.9 4.0 36 41-76 44-79 (97)
162 2hxo_A Putative TETR-family tr 27.6 30 0.0013 15.1 2.3 42 40-88 19-60 (237)
163 1x2m_A LAG1 longevity assuranc 27.1 32 0.0013 14.9 4.7 34 43-76 12-46 (64)
164 1t6c_A Exopolyphosphatase; alp 26.9 32 0.0014 14.8 5.6 63 51-125 53-115 (315)
165 2cqx_A LAG1 longevity assuranc 26.8 32 0.0014 14.8 4.5 35 40-76 20-54 (72)
166 3nnr_A Transcriptional regulat 26.7 33 0.0014 14.8 2.7 16 159-175 197-212 (228)
167 2fd5_A Transcriptional regulat 26.3 24 0.001 15.6 1.7 43 39-88 9-51 (180)
168 2jay_A Proteasome; hydrolase; 26.3 27 0.0011 15.4 1.9 41 146-186 247-288 (291)
169 1h75_A Glutaredoxin-like prote 26.2 18 0.00075 16.6 1.0 52 118-170 22-74 (81)
170 3g1l_A Transcriptional regulat 26.1 22 0.00092 16.0 1.4 41 39-86 46-86 (256)
171 2xdn_A HTH-type transcriptiona 26.1 31 0.0013 15.0 2.2 41 41-88 15-55 (210)
172 2krc_A DNA-directed RNA polyme 26.0 34 0.0014 14.7 2.5 48 42-89 15-65 (99)
173 1c9b_A General transcription f 25.7 17 0.00073 16.7 0.8 35 40-76 49-83 (207)
174 3fiw_A Putative TETR-family tr 25.5 34 0.0014 14.7 2.3 45 38-89 26-70 (211)
175 1le8_B Mating-type protein alp 25.5 34 0.0014 14.7 3.3 30 53-85 27-56 (83)
176 1z0x_A Transcriptional regulat 25.4 34 0.0014 14.7 2.3 36 44-86 13-48 (220)
177 3g7r_A Putative transcriptiona 25.2 35 0.0015 14.6 3.5 51 31-89 30-80 (221)
178 3hi0_A Putative exopolyphospha 25.2 35 0.0015 14.6 6.1 26 98-123 91-116 (508)
179 1au7_A Protein PIT-1, GHF-1; c 25.0 35 0.0015 14.6 4.8 36 41-76 97-132 (146)
180 1uhs_A HOP, homeodomain only p 24.9 35 0.0015 14.6 4.5 23 54-76 25-47 (72)
181 3dpj_A Transcription regulator 24.6 36 0.0015 14.6 3.2 38 42-86 13-50 (194)
182 3bhq_A Transcriptional regulat 24.1 36 0.0015 14.5 2.3 40 42-88 17-56 (211)
183 1xl3_C Protein type A, secreti 23.9 37 0.0015 14.5 3.2 69 40-121 6-78 (92)
184 1z6m_A Conserved hypothetical 23.8 28 0.0012 15.3 1.6 24 147-170 150-174 (175)
185 2o8x_A Probable RNA polymerase 23.0 36 0.0015 14.6 2.0 50 20-79 3-52 (70)
186 3hd5_A Thiol:disulfide interch 22.9 38 0.0016 14.3 3.4 32 146-177 151-191 (195)
187 3mdq_A Exopolyphosphatase; str 22.6 39 0.0016 14.3 5.7 62 52-125 46-107 (315)
188 2prr_A Alkylhydroperoxidase AH 22.1 40 0.0017 14.2 5.0 19 41-59 23-41 (197)
189 2jj7_A Hemolysin II regulatory 21.8 40 0.0017 14.2 2.3 42 40-88 10-51 (186)
190 1x2n_A Homeobox protein pknox1 21.7 40 0.0017 14.2 3.6 24 53-76 32-55 (73)
191 2v79_A DNA replication protein 21.7 40 0.0017 14.2 3.5 21 59-79 52-72 (135)
192 1ilo_A Conserved hypothetical 21.6 31 0.0013 14.9 1.5 62 96-169 4-76 (77)
193 2g7s_A Transcriptional regulat 21.5 41 0.0017 14.2 2.7 43 39-88 10-52 (194)
194 1e3o_C Octamer-binding transcr 21.2 41 0.0017 14.1 4.8 33 43-75 113-145 (160)
195 3lsj_A DEST; transcriptional r 21.0 28 0.0012 15.3 1.1 23 59-87 33-55 (220)
196 1s29_A LA protein; winged heli 21.0 35 0.0015 14.6 1.7 42 18-62 6-51 (92)
197 2x26_A Periplasmic aliphatic s 20.6 43 0.0018 14.0 5.0 24 57-80 220-243 (308)
198 2zcx_A SCO7815, TETR-family tr 20.4 43 0.0018 14.0 3.1 45 38-89 24-68 (231)
199 2o4d_A Hypothetical protein PA 20.3 41 0.0017 14.1 1.9 18 64-81 78-95 (165)
200 3iwf_A Transcription regulator 20.3 36 0.0015 14.5 1.6 37 42-78 19-55 (107)
201 2qtq_A Transcriptional regulat 20.2 43 0.0018 14.0 3.1 43 39-88 18-60 (213)
No 1
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=100.00 E-value=0 Score=375.22 Aligned_cols=162 Identities=32% Similarity=0.677 Sum_probs=156.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 56589999999999986784321336999999999982668999999999850887999999997644320222787069
Q gi|254780856|r 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 (218)
Q Consensus 16 f~fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~ 95 (218)
+.|+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|++|+++||+|||||+||+++|+| ||+
T Consensus 1 m~~~~~~~~~i~~ii~~Yp~~~~r~all~~L~~iQ~~~GyIp~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~ 79 (181)
T 3i9v_2 1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYH 79 (181)
T ss_dssp --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCC-SEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-CEE
T ss_conf 9988889999999998788864776999999999998299099999999999892999999999762502358898-868
Q ss_pred EEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHC
Q ss_conf 99618835877089248999998827564751778818999532456677886799858341-45889899999999982
Q gi|254780856|r 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174 (218)
Q Consensus 96 I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~ 174 (218)
|+||++++|+++|+++|+++++++|||+.|+||+||+|||++++|||+|++||+|+||++.| ++||++++++||+.||+
T Consensus 80 i~VC~~~~C~~~Ga~~l~~~l~~~Lgi~~gett~Dg~ftle~~~ClG~C~~AP~v~Vn~~~y~~~lt~e~~~~il~~lr~ 159 (181)
T 3i9v_2 80 LQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRA 159 (181)
T ss_dssp EEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEECCCCEEEECCEEECCCCCHHHHHHHHHHHHC
T ss_conf 99559768775788689999999819999967899868764221768607898499989873587999999999999986
Q ss_pred CCCC
Q ss_conf 8899
Q gi|254780856|r 175 GQGD 178 (218)
Q Consensus 175 gk~~ 178 (218)
|+..
T Consensus 160 g~~~ 163 (181)
T 3i9v_2 160 GKRL 163 (181)
T ss_dssp TCCG
T ss_pred CCCC
T ss_conf 9999
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.92 E-value=4e-26 Score=195.63 Aligned_cols=85 Identities=27% Similarity=0.698 Sum_probs=82.8
Q ss_pred CCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHH
Q ss_conf 22278706999618835877089248999998827564751778818999532456677886799858341458898999
Q gi|254780856|r 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLE 166 (218)
Q Consensus 87 ~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~ 166 (218)
+.|+| ||+|+||++++|+++||++|+++++++||++.|+||+||+|||++++|||+|++||+|+||+++|++||+++++
T Consensus 1 l~P~G-k~~i~VC~g~~C~~~G~~~l~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~aP~v~id~~~y~~vt~e~v~ 79 (85)
T 2auv_A 1 MVPKG-KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKVYGNVTPGQVK 79 (85)
T ss_dssp CCSCC-SBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGGGCCCCSSSSHHH
T ss_pred CCCCC-CEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 96786-57999658828876780999999999868874414589619999797318447999899999987788999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780856|r 167 EIIDAF 172 (218)
Q Consensus 167 ~il~~L 172 (218)
+||+++
T Consensus 80 ~il~~y 85 (85)
T 2auv_A 80 KILAEY 85 (85)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 999719
No 3
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.40 E-value=1.1e-13 Score=112.00 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=73.4
Q ss_pred CCEEEEECCCH--------HHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE--CCHHHCCCC
Q ss_conf 70699961883--------58770892489999988275647517788189995324566778867998--583414588
Q gi|254780856|r 92 TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLT 161 (218)
Q Consensus 92 ~k~~I~VC~~~--------~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~V--n~~~y~~lt 161 (218)
.|| |-||++. +|+.+||.++++++++++....+. |+.+++..+.|||.|..||+|+| ++.+|+++|
T Consensus 3 ~rH-i~VC~~~r~~g~~~~sC~~~Gs~~v~~~l~~~l~~~~~~---~~~v~v~~~gClG~C~~gP~v~I~P~g~~Y~~v~ 78 (110)
T 1m2d_A 3 FKH-VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQL---FMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVK 78 (110)
T ss_dssp CEE-EEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHH---HTTEEEEEESCCSCGGGCSCEEEETTTEEECSCC
T ss_pred CCE-EEEECCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCCCCCCCEEEECCCCEEECCC
T ss_conf 898-999799998888788723529899999999998554389---8747999738884326997089907977781599
Q ss_pred HHHHHHHHHH-HHCCCC
Q ss_conf 9899999999-982889
Q gi|254780856|r 162 PERLEEIIDA-FSTGQG 177 (218)
Q Consensus 162 ~e~~~~il~~-Lr~gk~ 177 (218)
++++++||++ |+.|++
T Consensus 79 p~~v~~Iv~~hl~~g~p 95 (110)
T 1m2d_A 79 PEDVDEIVEKHLKGGEP 95 (110)
T ss_dssp GGGHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHCCCE
T ss_conf 99999999999979947
No 4
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=77.25 E-value=2 Score=23.02 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 21336999999999982668999999999850887999999997644320222
Q gi|254780856|r 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 37 ~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+.|.+||..--.+=.+.|| . -.+..||+..|++. .|||++|.-|.
T Consensus 15 ~~R~~Il~aa~~l~~~~G~-~-~T~~~IA~~agvs~------~tiY~~F~sK~ 59 (194)
T 2q24_A 15 RNRDKILAAAVRVFSEEGL-D-AHLERIAREAGVGS------GTLYRNFPTRE 59 (194)
T ss_dssp -CHHHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCH------HHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHHCC-C-CCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 9999999999999998696-6-76999999839887------46988769999
No 5
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=72.47 E-value=2.3 Score=22.60 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2133699999999998266899999999985088799999999764432022
Q gi|254780856|r 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 37 ~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+.|.++|..-..+=.++|++ .+..||+..|++ -.|||.+|..|
T Consensus 14 ~tr~~Il~aA~~l~~~~G~~---T~~~IA~~agvs------~~t~Y~~F~sK 56 (190)
T 2v57_A 14 RTRRAILDAAMLVLADHPTA---ALGDIAAAAGVG------RSTVHRYYPER 56 (190)
T ss_dssp HHHHHHHHHHHHHHTTCTTC---CHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCCCC---CHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999999986997---399999998909------99997773899
No 6
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=70.73 E-value=2.3 Score=22.55 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..||..-..+=.+.|| . -.+..||+..|++. .|||.+|..|.
T Consensus 17 ~R~~Il~aA~~l~~~~G~-~-~T~~~IA~~aGvs~------~tlY~~F~sKe 60 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGA-D-ASLEEIARRAGVGS------ATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHHHHHHGG-G-CCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-C-CCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 999999999999998697-8-88999999979199------99987758998
No 7
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=70.13 E-value=3.3 Score=21.54 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCC
Q ss_conf 99999999999867--843213369999999999826689999999998508879999999-----976443202
Q gi|254780856|r 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI-----ATFYTQFQL 87 (218)
Q Consensus 20 ~e~~~~i~~ii~~y--P~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V-----aTFY~~f~~ 87 (218)
++.....+.+|.+| |-+.+...++.+|. +.-|-|.+ +||..||++.++|.|- -..|+.+++
T Consensus 164 pemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsr 231 (380)
T 3m6z_A 164 PEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (380)
T ss_dssp GGGTTTHHHHHHHTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCCCHH---HHHHHHCCCHHHHCCCCCCCCCCHHHHHHH
T ss_conf 555017999999707997737899999996----08999728---999984885323137779420118886556
No 8
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=69.03 E-value=2.8 Score=21.94 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHH
Q ss_conf 6999999999982--66899999999985-08879999999976443202227870699961883587708924899999
Q gi|254780856|r 41 AVIPLLMRAQEQE--GWVSRAAIEVVANI-LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 (218)
Q Consensus 41 alip~L~~vQ~~~--G~Ip~eai~~iA~~-L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~ 117 (218)
++...|...|... .|.+...+..++.. .+++..++...+. .+.- +-. +. .- ..+-
T Consensus 99 ~~~~~lf~~~~~~~~~~~~~~~~~~~a~~~~gl~~~~~~~~~~-------~~~~-~~~----------i~---~~-~~~~ 156 (202)
T 3gha_A 99 DFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLD-------KETF-ASQ----------VE---KD-SDLN 156 (202)
T ss_dssp HHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHH-------HTTT-HHH----------HH---HH-HHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHC-------HHHH-HHH----------HH---HH-HHHH
T ss_conf 9999999850023311011445677776530234788887204-------2999-999----------99---99-9999
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8827564751778818999532456677886799858341-458898999999999828899
Q gi|254780856|r 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGD 178 (218)
Q Consensus 118 ~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~gk~~ 178 (218)
+.+||.. -|.+.||++++ +..+.+.+.++|+++.+||-+
T Consensus 157 ~~~gI~g----------------------TPt~iInG~~~~g~~~~~~l~~~Id~~L~~k~~ 196 (202)
T 3gha_A 157 QKMNIQA----------------------TPTIYVNDKVIKNFADYDEIKETIEKELKGKLE 196 (202)
T ss_dssp HHTTCCS----------------------SCEEEETTEECSCTTCHHHHHHHHHHHHHHC--
T ss_pred HHHCCEE----------------------CCEEEECCEEECCCCCHHHHHHHHHHHHHHCHH
T ss_conf 9839801----------------------688999999946999999999999999861300
No 9
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=68.28 E-value=3.9 Score=21.02 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 336999999999982668999999999850887999999997644320
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
|..||..-..+=.+.|| . -.+..||+..|++. .|||.+|.
T Consensus 15 Re~Il~aA~~l~~~~G~-~-~t~~~IA~~aGvs~------~tlY~~F~ 54 (196)
T 2qwt_A 15 RARVLEVAYDTFAAEGL-G-VPMDEIARRAGVGA------GTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHHHHHTCT-T-SCHHHHHHHTTSCH------HHHHHHCS
T ss_pred HHHHHHHHHHHHHHHCC-C-CCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 99999999999998697-8-88999999969499------99987848
No 10
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=65.27 E-value=5.3 Score=20.09 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.|..||..-..+=.+.|| . -.+..||+..|++ ..|||.+|..+
T Consensus 10 ~R~~il~aa~~l~~~~G~-~-~t~~~IA~~agvs------~~tlY~~F~sK 52 (190)
T 3jsj_A 10 PRERLLEAAAALTYRDGV-G-IGVEALCKAAGVS------KRSMYQLFESK 52 (190)
T ss_dssp HHHHHHHHHHHHHHHHCT-T-CCHHHHHHHHTCC------HHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHCC-C-CCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999997697-8-8799999997909------99996774999
No 11
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=62.20 E-value=7 Score=19.32 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.+..|+.....+=.+.|| ..-.+..||+..|++ ..|||++|..|.
T Consensus 18 ~r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs------~~t~Y~~F~sKe 62 (207)
T 2rae_A 18 TQDRISTVGIELFTEQGF-DATSVDEVAEASGIA------RRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTSCHHHHHHHTTSC------HHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999997291-306799999997919------889988879999
No 12
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=61.44 E-value=4 Score=20.93 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 19 R~~Il~aA~~l~~~~G~-~~~si~~IA~~agvs------~~tlY~~F~sK 61 (208)
T 3cwr_A 19 RESIVGAAQRLLSSGGA-AAMTMEGVASEAGIA------KKTLYRFASGR 61 (208)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCCCCCCCCH
T ss_conf 99999999999998691-507799999994899------66403589999
No 13
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=61.42 E-value=4.8 Score=20.40 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCC
Q ss_conf 99999999999867--843213369999999999826689999999998508879999999-----976443202
Q gi|254780856|r 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI-----ATFYTQFQL 87 (218)
Q Consensus 20 ~e~~~~i~~ii~~y--P~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V-----aTFY~~f~~ 87 (218)
++.....+.+|.+| |-+.+...++.+|. +.-|-|.+ +||..|+++.++|.|- -..|+.+++
T Consensus 164 pemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsr 231 (519)
T 2csb_A 164 PEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (519)
T ss_dssp GGGTTTTHHHHHHTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSSSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCCCHH---HHHHHHCCCHHHHCCCCCCCCCCHHHHHHH
T ss_conf 555017999999717997737899999996----08999728---999984885334137779420118887666
No 14
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=59.32 E-value=5.7 Score=19.91 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.||= . .+..||+..|++ ..|||++|.-|
T Consensus 14 r~~Il~aA~~lf~~~G~~-~-T~~~IA~~aGvs------~~~iY~~F~sK 55 (224)
T 1t33_A 14 KSQLIAAALAQFGEYGLH-A-TTRDIAALAGQN------IAAITYYFGSK 55 (224)
T ss_dssp HHHHHHHHHHHHHHHGGG-S-CHHHHHHHHTSC------HHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHCHH-H-HHHHHHHHHCCC------CCCCCCCCCCH
T ss_conf 999999999999987927-5-799999980998------02123578999
No 15
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=58.90 E-value=5.6 Score=19.97 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 14 r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs------~~t~Y~~F~~Ke 57 (202)
T 3lwj_A 14 RQKILTCSLDLFIEKGY-YNTSIRDIIALSEVG------TGTFYNYFVDKE 57 (202)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCSC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 99999999999987095-517599999987929------999988669999
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.30 E-value=10 Score=18.23 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+...|.+.+-...||..|+|++..|.
T Consensus 19 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2djn_A 19 LAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699899999999999787866746
No 17
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=57.64 E-value=6 Score=19.74 Aligned_cols=44 Identities=7% Similarity=0.253 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|.++|..-..+=.+.|| ..-.+..||+..||+. .|||.+|..+
T Consensus 15 rr~~Il~aa~~l~~~~G~-~~~s~~~IA~~agvs~------~t~Y~~F~~K 58 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGF-HETSMDAIAAKAEISK------PMLYLYYGSK 58 (203)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSCH------HHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999997393-5287999999989098------8887881998
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=57.09 E-value=11 Score=17.99 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-+...|.+.+-...+|+.|||+...|
T Consensus 12 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V 44 (58)
T 1ig7_A 12 LLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44 (58)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998679979999999999959698886
No 19
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=56.00 E-value=3.7 Score=21.13 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 86784321336999999999982668999999999850887999999997644320222
Q gi|254780856|r 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 31 ~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.+.|++ +|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 8 ~~~~~e-rR~~Il~aA~~l~~~~G~-~~~t~~~IA~~agvs------~~tiY~~F~sK~ 58 (217)
T 3nrg_A 8 FNLPEE-KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIA------KGSFYQYFADKK 58 (217)
T ss_dssp HTSCHH-HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTCC------TTGGGGTCSSHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 679799-999999999999997392-407799999985888------235888648999
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=55.91 E-value=11 Score=17.87 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|..+-+...|.+.+...+||..|||+...|
T Consensus 14 ~~~Le~~F~~~~yPs~~~r~~LA~~lgl~~~qV 46 (68)
T 1ftt_A 14 VYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46 (68)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHE
T ss_conf 999999998679979999999999819887880
No 21
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=55.57 E-value=6.6 Score=19.48 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..||.....+=.+.| +..-.+..||+..||+. .|||.+|..|
T Consensus 30 R~~Il~aa~~l~~~~G-~~~~t~~~IA~~aGvs~------~tlY~~F~sK 72 (217)
T 3hta_A 30 RQRIIDAAIRVVGQKG-IAGLSHRTVAAEADVPL------GSTTYHFATL 72 (217)
T ss_dssp HHHHHHHHHHHHHHHT-GGGCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999999859-04077999999948883------1487616999
No 22
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=55.38 E-value=8.1 Score=18.89 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.+||..-..+=.+.|| ..-.|..||+..||+. .|||.+|.-|
T Consensus 50 R~~Il~AA~~lf~e~G~-~~vS~~~IA~~AGVS~------~t~Y~~F~sK 92 (260)
T 2of7_A 50 REAIRAATYGLIRQQGY-EATTVEQIAERAEVSP------STVLRYFPTR 92 (260)
T ss_dssp HHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTSCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998394-5287999999969679------7999985999
No 23
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=55.22 E-value=12 Score=17.79 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+.+|...-+...|.+.+....||+.|||+...|.
T Consensus 31 Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~ 65 (81)
T 1b8i_A 31 QTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999987799899999999999598988812
No 24
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.94 E-value=12 Score=17.76 Aligned_cols=33 Identities=3% Similarity=-0.130 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999998266899999999985088799999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.+|...-...-|.+.+.+..||+.|+|+...|.
T Consensus 20 ~~Le~~F~~~~~P~~~~~~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 20 RTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999987699799999999999695999968
No 25
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.12 E-value=12 Score=17.68 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-|.+|...-...-|.+.+-++.||..++|+...|.
T Consensus 14 Ql~~Le~~F~~n~~Ps~~~~~~LA~~~~l~~~qV~ 48 (64)
T 2e19_A 14 LLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999984799599999999999880989945
No 26
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=53.97 E-value=12 Score=17.66 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|..+-+...|.+.+-..+||+.|+|++..|
T Consensus 19 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV 51 (70)
T 2e1o_A 19 TIELEKKFETQKYLSPPERKRLAKMLQLSERQV 51 (70)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999999859999999999999959898895
No 27
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.86 E-value=12 Score=17.65 Aligned_cols=35 Identities=6% Similarity=-0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-|.+|...-+..-|.+.+-++.||..++|+...|.
T Consensus 16 Ql~~Le~~F~~~~~Ps~~~~~~La~~~~L~~~~V~ 50 (71)
T 2da7_A 16 HMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999980799599999999999880989989
No 28
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=53.54 E-value=7.7 Score=19.04 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 10 ~R~~Il~aA~~lf~~~G~-~~~ti~~Ia~~agvs------~~tiY~~F~sK 53 (203)
T 3cdl_A 10 KRESIVQAAIAEFGDRGF-EITSMDRIAARAEVS------KRTVYNHFPSK 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSC------HHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCHHHHCCCH
T ss_conf 999999999999997590-507899999986859------55255218986
No 29
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=52.80 E-value=12 Score=17.75 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999998-2668999999999850887999999997644320222787069996188358770892489999988275
Q gi|254780856|r 44 PLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 (218)
Q Consensus 44 p~L~~vQ~~-~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi 122 (218)
-.|...+++ .-+||- .++|+.+++++++|.-=.++...|-..-.| |.| +.|.+.+++.||.
T Consensus 21 r~L~~l~~~g~~~iSS---~~La~~~gi~~~qvRkDls~fG~~G~~g~G--Y~V-------------~~L~~~i~~iLG~ 82 (215)
T 2vt3_A 21 RFLKNLHASGKQRVSS---AELSDAVKVDSATIRRDFSYFGALGKKGYG--YNV-------------DYLLSFFRKTLDQ 82 (215)
T ss_dssp HHHHHHHHTTCCEECH---HHHHHHHCCCHHHHHHHHHHTTCCC-------EEH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEECH---HHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--EEH-------------HHHHHHHHHHHCC
T ss_conf 9999999869948979---999999698999999999997424998887--168-------------9999999999689
Q ss_pred CC
Q ss_conf 64
Q gi|254780856|r 123 KP 124 (218)
Q Consensus 123 ~~ 124 (218)
+.
T Consensus 83 ~~ 84 (215)
T 2vt3_A 83 DE 84 (215)
T ss_dssp C-
T ss_pred CC
T ss_conf 99
No 30
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=52.75 E-value=9.4 Score=18.46 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+.+|+.....+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 13 ~r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs~------~t~Y~~F~sK 56 (192)
T 2fq4_A 13 TQKAILSASYELLLESGF-KAVTVDKIAERAKVSK------ATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999998394-4077999999989199------8885347899
No 31
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=52.54 E-value=13 Score=17.51 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...=+...|.+.+-...||+.|||++..|.
T Consensus 15 ~~~Le~~F~~~~yps~~~r~~LA~~lgl~~~qV~ 48 (62)
T 2vi6_A 15 LCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999987799998999999999198877823
No 32
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=52.39 E-value=8.8 Score=18.63 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.+||..-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 25 R~~Il~aA~~l~~~~G~-~~~t~~~IA~~agvs~------~tlY~~F~sK 67 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGT-AQLTFERVARVSGVSK------TTLYKWWPSK 67 (214)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHCCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998593-5087999999979298------8874508999
No 33
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.25 E-value=13 Score=17.48 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-.+.-|.+....+.||..|+|+...|
T Consensus 29 ~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV 61 (80)
T 2dmt_A 29 LMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61 (80)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998769999999999999978498884
No 34
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.99 E-value=13 Score=17.46 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+..-|.+.+....||..|+|+...|.
T Consensus 19 l~~Le~~F~~~~yP~~~~~~~LA~~l~l~~~~V~ 52 (70)
T 2dmu_A 19 LEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998799998999999999598989947
No 35
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=51.68 E-value=7.8 Score=18.98 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.2
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999828
Q gi|254780856|r 165 LEEIIDAFSTG 175 (218)
Q Consensus 165 ~~~il~~Lr~g 175 (218)
++.+++.||.|
T Consensus 177 ~~~~l~gL~~g 187 (199)
T 2o7t_A 177 LGLYLSGLKHG 187 (199)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHCCCC
T ss_conf 99999874666
No 36
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=51.45 E-value=13 Score=17.40 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+....||..|+|+...|.
T Consensus 15 l~~Le~~F~~~~yP~~~~r~~La~~l~l~~~~V~ 48 (63)
T 2h1k_A 15 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999987799899999999999397978946
No 37
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=51.22 E-value=8.9 Score=18.60 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 11 ~r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs------~~t~Y~~F~sK 54 (194)
T 2nx4_A 11 RRRSITAAAWRLIAARGI-EAANMRDIATEAGYT------NGALSHYFAGK 54 (194)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999997591-416599999987909------99994306999
No 38
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.18 E-value=8.9 Score=18.60 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|-
T Consensus 10 rr~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~Y~~F~~K~ 54 (209)
T 2gfn_A 10 RRRALADAVLALIAREGI-SAVTTRAVAEESGWS------TGVLNHYFGSRH 54 (209)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHSSC------HHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999997291-307699999997909------999974348999
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.46 E-value=14 Score=17.30 Aligned_cols=34 Identities=9% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-.+.-|.+.+-++.||..|+|+...|.
T Consensus 20 l~~Le~~f~~~~~P~~~~~~~LA~~~gl~~~~V~ 53 (76)
T 2dn0_A 20 LSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp HHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998689999999999999497999999
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=50.22 E-value=14 Score=17.27 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-+..-|.+.+..+.+|..+||+...|
T Consensus 13 l~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V 45 (67)
T 2k40_A 13 IEVLENVFRVNCYPGIDILEDLAQKLNLELDRI 45 (67)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998779999899999999949598895
No 41
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=50.05 E-value=11 Score=18.01 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 16 r~~Il~aA~~lf~~~G~-~~~si~~Ia~~agvs------~~t~Y~~F~sK 58 (220)
T 3lhq_A 16 RQHILDVALRLFSQQGV-SATSLAEIANAAGVT------RGAIYWHFKNK 58 (220)
T ss_dssp HHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997491-406599999997939------88999886999
No 42
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=49.81 E-value=13 Score=17.48 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+|..++.....+=.+.||- .-.+..||+..||+ ..|||.+|..+.
T Consensus 12 ~r~~Il~aa~~l~~~~G~~-~~ti~~Ia~~agvs------~~t~Y~yF~sK~ 56 (203)
T 3b81_A 12 KRTELANKIWDIFIANGYE-NTTLAFIINKLGIS------KGALYHYFSSKE 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHCST-TCCHHHHHHHHTCC------HHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 9999999999999972924-17799999997909------999976469999
No 43
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=49.67 E-value=14 Score=17.22 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+.+..||..|+|+...|.
T Consensus 19 ~~~Le~~F~~~~~P~~~~~~~La~~~~l~~~qV~ 52 (70)
T 2da1_A 19 LRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp HHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999997599899999999999791999988
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=49.13 E-value=15 Score=17.16 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+....||..+||+...|.
T Consensus 17 ~~~Le~~F~~~~yP~~~~~~~LA~~~gl~~~qV~ 50 (61)
T 1akh_A 17 RAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999988699999999999999786988824
No 45
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=48.86 E-value=13 Score=17.61 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|..++..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 12 ~R~~Il~aa~~l~~~~G~-~~~si~~Ia~~agvs------~~tiY~~F~sK 55 (196)
T 3he0_A 12 KRDQILAAAEQLIAESGF-QGLSMQKLANEAGVA------AGTIYRYFSDK 55 (196)
T ss_dssp CHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSC------HHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCCCCCCCCH
T ss_conf 999999999999997395-637799999986899------77540218999
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=48.85 E-value=15 Score=17.14 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+..-|.+.+..+.+|..+||+...|.
T Consensus 11 l~~Le~~F~~n~~Ps~~~~~~LA~~lgls~~~V~ 44 (60)
T 3a02_A 11 LEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999986699799999999999198999935
No 47
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.84 E-value=15 Score=17.13 Aligned_cols=34 Identities=6% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+-...||..|+|+...|.
T Consensus 19 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 19 LRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699999999999999099988825
No 48
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=48.74 E-value=15 Score=17.12 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+....||..+||+...|.
T Consensus 15 ~~~Le~~F~~n~~P~~~~~~~LA~~~~L~~~qV~ 48 (66)
T 1bw5_A 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999988599999999999999390999988
No 49
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=48.67 E-value=10 Score=18.13 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 29 ~~Il~aA~~l~~~~G~-~~~t~~~IA~~agvs------~~tiY~yF~sK 70 (217)
T 3mvp_A 29 NKILQVAKDLFSDKTY-FNVTTNEIAKKADVS------VGTLYAYFASK 70 (217)
T ss_dssp HHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999987193-427899999988909------88999988999
No 50
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=48.37 E-value=15 Score=17.09 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|..+-+..-|.+.+.++.||..|+|+..+|
T Consensus 19 ~~~Le~~F~~~~~P~~~~~~~La~~~~l~~~qV 51 (70)
T 2da2_A 19 LRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVI 51 (70)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999999869989999999999949598893
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=48.12 E-value=15 Score=17.06 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+..|...=....|++.+....||..|||++..|.
T Consensus 9 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 9 VLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999970799699999999998669867867
No 52
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=47.37 E-value=9.3 Score=18.48 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 15 ~~Il~aA~~l~~~~G~-~~~t~~~IA~~aGvs------~~~ly~~F~sK 56 (200)
T 2hyj_A 15 GRILGRAAEIASEEGL-DGITIGRLAEELEMS------KSGVHKHFGTK 56 (200)
T ss_dssp HHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCC------HHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999997391-518899999987819------78895544899
No 53
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=47.31 E-value=15 Score=17.14 Aligned_cols=44 Identities=9% Similarity=0.318 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
=|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 8 lR~~Il~aA~~l~~~~G~-~~~t~~~IA~~agvs------~~~lY~~F~sK 51 (192)
T 2zcm_A 8 MKDKIIDNAITLFSEKGY-DGTTLDDISKSVNIK------KASLYYHYDNK 51 (192)
T ss_dssp CHHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTCC------HHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999997492-627799999988909------88997887999
No 54
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=47.18 E-value=9.5 Score=18.43 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 6999999999982668999999999850887999999997644320
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
.||..-..+=.+.| ++.-.+..||+..||+. .|||.+|.
T Consensus 13 ~Il~aA~~l~~e~G-~~~~si~~Ia~~agvs~------~t~Y~~F~ 51 (193)
T 2dg8_A 13 RILAATLDLIAEEG-IARVSHRRIAQRAGVPL------GSMTYHFT 51 (193)
T ss_dssp HHHHHHHHHHHHHC-GGGCCHHHHHHHHTSCT------HHHHHHCS
T ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 99999999999759-04076999999989099------99987808
No 55
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=47.17 E-value=16 Score=16.96 Aligned_cols=43 Identities=7% Similarity=-0.006 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..||.+=...=.+.|| . -.|..||+..||+ ..|||.+|..|-
T Consensus 22 r~~Il~aA~~lf~e~G~-~-~si~~IA~~aGvs------~~tiY~hF~sK~ 64 (215)
T 2hku_A 22 RDALFTAATELFLEHGE-G-VPITQICAAAGAH------PNQVTYYYGSKE 64 (215)
T ss_dssp HHHHHHHHHHHHHHHCT-T-SCHHHHHHHHTCC------HHHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHHCC-C-CCHHHHHHHHCCC------CCHHHHHCCCHH
T ss_conf 99999999999998684-7-8299999985506------334888569999
No 56
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=47.12 E-value=16 Score=16.96 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+....+|..+||+...|.
T Consensus 15 l~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~~V~ 48 (61)
T 2hdd_A 15 LARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999986799799999999999796878802
No 57
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.86 E-value=16 Score=16.93 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-++.-|.+.+..+.||..|+|+...|.
T Consensus 19 ~~~Le~~F~~n~~P~~~~r~~LA~~lgl~~~qV~ 52 (80)
T 2dms_A 19 LDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999998699988999999999099888877
No 58
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=46.59 E-value=16 Score=16.91 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|..-..+=.+.||= .-.+..||+..||+ ..|||.+|..|
T Consensus 11 r~~Il~aa~~l~~~~G~~-~~s~~~Ia~~agvs------~~tiY~~F~~K 53 (215)
T 1ui5_A 11 RATIIGAAADLFDRRGYE-STTLSEIVAHAGVT------KGALYFHFAAK 53 (215)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCHHHHHCCCH
T ss_conf 999999999999985915-18799999986878------21187616999
No 59
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=46.39 E-value=13 Score=17.48 Aligned_cols=42 Identities=5% Similarity=0.106 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 3369999999999826689999999998508879999999976443202
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
|..||..-..+=.+.| ...-.+..||+..|++ ..|||.+|..
T Consensus 6 R~~Il~aA~~l~~~~G-~~~~s~~~IA~~AGvs------~~siY~yF~~ 47 (185)
T 2yve_A 6 KEMILRTAIDYIGEYS-LETLSYDSLAEATGLS------KSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHHHHHSC-STTCCHHHHHHHHCCC------HHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHCCCCCC
T ss_conf 9999999999999869-0517799999986838------5313066899
No 60
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=46.30 E-value=16 Score=16.88 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-++.-|.+.+..+.||..|||+...|.
T Consensus 13 l~~Le~~F~~~~yP~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 13 LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999986799898999999999099832611
No 61
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.16 E-value=16 Score=16.86 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999998266899999999985088799999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
..|...=++.-|.+.+..+.||..|+|+...|.
T Consensus 20 ~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~~V~ 52 (80)
T 2cue_A 20 EALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999986699899999999999798887833
No 62
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=45.99 E-value=16 Score=16.85 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+.+|...-....|.+.+....+|..|+|+...|.
T Consensus 29 Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~ 63 (81)
T 1fjl_A 29 QLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999988699998999999999299988916
No 63
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=45.98 E-value=12 Score=17.80 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|.....+=.+.| +..-.+..||+..|++ .+|||.+|..+
T Consensus 11 ~~Il~aa~~lf~~~G-~~~~s~~~Ia~~agvs------~~t~Y~~F~sK 52 (206)
T 1vi0_A 11 MQIIDAAVEVIAENG-YHQSQVSKIAKQAGVA------DGTIYLYFKNK 52 (206)
T ss_dssp HHHHHHHHHHHHHHC-GGGCCHHHHHHHHTSC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHHCCH
T ss_conf 999999999998739-0306799999997949------99999991872
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.80 E-value=16 Score=16.83 Aligned_cols=34 Identities=3% Similarity=0.023 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-.+.-|.+.+.+..||+.|+|+...|.
T Consensus 23 ~~~Le~~F~~~~~P~~~~~~~LA~~~gl~~~~V~ 56 (89)
T 2ecb_A 23 LRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699999999999999881999999
No 65
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=45.80 E-value=10 Score=18.15 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+..|+..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 9 tre~Il~aa~~l~~~~G~-~~~t~~~IA~~agvs------~~t~Y~~F~~K 52 (195)
T 3frq_A 9 SDDEVLEAATVVLKRCGP-IEFTLSGVAKEVGLS------RAALIQRFTNR 52 (195)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHTCC------HHHHHHHHCSH
T ss_pred CHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCHHHHHCCCH
T ss_conf 099999999999997591-307799999987898------22178739599
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=45.74 E-value=16 Score=16.82 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+..+.||..+|++...|.
T Consensus 16 l~~Le~~F~~~~yP~~~~~~~LA~~lgls~~qV~ 49 (66)
T 3nau_A 16 IAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp HHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998289989999999999889999989
No 67
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=45.54 E-value=13 Score=17.60 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|.+||..-..+=.+.|| ..-.+..||+..|++. .|||.+|..|
T Consensus 16 rr~~Il~aA~~lf~~~G~-~~~ti~~Ia~~agvs~------~t~Y~~F~~K 59 (221)
T 3c2b_A 16 RQNAVLDQALRLLVEGGE-KALTTSGLARAANCSK------ESLYKWFGDR 59 (221)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999997591-3077999999979498------8999887999
No 68
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.39 E-value=17 Score=16.79 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+.++.||..++|+...|.
T Consensus 15 ~~~Le~~F~~~~~P~~~~~~~La~~~gl~~~qV~ 48 (76)
T 2ecc_A 15 LAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699989999999999885999999
No 69
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=45.31 E-value=12 Score=17.77 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..||..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..|.
T Consensus 40 tR~~Il~AA~~l~~e~G~-~~~T~~~Ia~~AGvs------~~t~Y~~F~~K~ 84 (214)
T 2guh_A 40 SRSLIVDAAGRAFATRPY-REITLKDIAEDAGVS------APLIIKYFGSKE 84 (214)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTSC------HHHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999998392-407799999997919------879999878899
No 70
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=45.29 E-value=7.8 Score=19.00 Aligned_cols=77 Identities=12% Similarity=0.274 Sum_probs=40.3
Q ss_pred EEEECCCHHHHHH-CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH--CCCCHHHHHHHHHH
Q ss_conf 9996188358770-89248999998827564751778818999532456677886799858341--45889899999999
Q gi|254780856|r 95 HVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY--EDLTPERLEEIIDA 171 (218)
Q Consensus 95 ~I~VC~~~~C~l~-G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y--~~lt~e~~~~il~~ 171 (218)
+|.+=+...|+.+ -+..+++.+...+.+..-....|..-.|.... | ..-|++.||++.+ +.++++++.+.|++
T Consensus 18 ~v~lf~~~~C~~C~~a~~~l~~~~~~~~~~~v~~d~~~~~~l~~~y--~--~~VPvl~vdg~~~~~g~~~~~~l~~~L~~ 93 (100)
T 1wjk_A 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERY--K--FDIPVFHLNGQFLMMHRVNTSKLEKQLRK 93 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHS--S--SSCSEEEESSSEEEESSCCHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH--C--CCCCEEEECCEEEEEECCCHHHHHHHHHH
T ss_conf 9999989899437999999999988753221036730379999987--9--98796999999999726999999999999
Q ss_pred HHCC
Q ss_conf 9828
Q gi|254780856|r 172 FSTG 175 (218)
Q Consensus 172 Lr~g 175 (218)
|.+.
T Consensus 94 l~~~ 97 (100)
T 1wjk_A 94 LSGP 97 (100)
T ss_dssp SSCS
T ss_pred HHCC
T ss_conf 7555
No 71
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=45.19 E-value=11 Score=18.06 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..+
T Consensus 20 ~~Il~aA~~l~~~~G~-~~~ti~~IA~~agvs------~~t~Y~yF~sK 61 (206)
T 3kz9_A 20 QQLMEIALEVFARRGI-GRGGHADIAEIAQVS------VATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHHHHHSCC-SSCCHHHHHHHHTSC------HHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999997294-417799999987909------98996980999
No 72
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=45.18 E-value=8.3 Score=18.81 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2133699999999998266899999999985088799999999764432022
Q gi|254780856|r 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 37 ~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|.-+
T Consensus 12 ~~R~~Il~aa~~l~~~~G~-~~~t~~~IA~~agvs------~~tiY~~F~sK 56 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGV-DGLSLRQLAREAGVS------HAAPSKHFRDR 56 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHTC-----------CCCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 7999999999999997591-616599999997909------86786766986
No 73
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=44.31 E-value=13 Score=17.48 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699999999998266899999999985088799999999764432022
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+||..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..|
T Consensus 18 ~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~Y~~F~~K 58 (204)
T 2ibd_A 18 ELLDIAATLFAERGL-RATTVRDIADAAGIL------SGSLYHHFDSK 58 (204)
T ss_dssp HHHHHHHHHHHHHCS-TTCCHHHHHHHTTSC------HHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCHHHHHCCCH
T ss_conf 999999999997492-407799999986889------26599982999
No 74
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=44.12 E-value=8.6 Score=18.71 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..+|.....+=.+.| +..-.+..||+..||+. .|||.+|..+.
T Consensus 6 r~~Il~aa~~l~~~~G-~~~~t~~~Ia~~agvs~------~t~Y~~F~~K~ 49 (170)
T 3egq_A 6 SVRIIEAALRLYMKKP-PHEVSIEEIAREAKVSK------SLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHHHHTTSC-GGGCCHHHHHHHHTSCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCC------CCCHHHCCCHH
T ss_conf 9999999999999749-24067999999848996------87064289999
No 75
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=43.91 E-value=17 Score=16.64 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 9 r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~y~~F~sK 51 (197)
T 2gen_A 9 KDEILQAALACFSEHGV-DATTIEMIRDRSGAS------IGSLYHHFGNK 51 (197)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCC------HHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCHHHHCCCCH
T ss_conf 99999999999997592-517799999985839------21134507987
No 76
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=43.84 E-value=18 Score=16.63 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 8266899999999985088799999
Q gi|254780856|r 52 QEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 52 ~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.+.|.+.+....||+.+||+..+|.
T Consensus 22 ~~PyP~~~er~~La~~~gL~~~qV~ 46 (60)
T 1k61_A 22 ENPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp TSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9899699999999999880999999
No 77
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=43.75 E-value=18 Score=16.62 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+..-|.+.+-...||+.|+|+...|.
T Consensus 14 l~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~ 47 (68)
T 1zq3_P 14 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999986699899999999999799756877
No 78
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=43.55 E-value=17 Score=16.73 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999826689999999998508879999999976443202
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
+|.....+=.+.|| ..-.+..||+..|++ ..|||.+|..
T Consensus 7 Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~tiY~~F~~ 45 (179)
T 2eh3_A 7 ILEVSKELFFEKGY-QGTSVEEIVKRANLS------KGAFYFHFKS 45 (179)
T ss_dssp HHHHHHHHHHHHCS-TTCCHHHHHHHHTCC------HHHHHHHCSS
T ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCHHHHCCC
T ss_conf 99999999997392-507699999987849------6521442899
No 79
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.40 E-value=18 Score=16.62 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 3369999999999826689999999998508879999999976443202
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
+..++..-..+=.+.|| ..-.|..||+.+||+ ..|||.+|..
T Consensus 21 R~~Il~AA~~lf~e~G~-~~~T~~~IA~~aGvs------~~tlY~hF~s 62 (243)
T 2g7l_A 21 RRWIVDTAVALMRAEGL-EKVTMRRLAQELDTG------PASLYVYVAN 62 (243)
T ss_dssp HHHHHHHHHHHHHHHCS-SSCCHHHHHHHTTSC------HHHHTTTCCS
T ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCC------CCCCHHCCCC
T ss_conf 99999999999998094-307899999986899------5532003909
No 80
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=43.34 E-value=14 Score=17.24 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..|.
T Consensus 12 r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs------~~t~Y~~F~~K~ 55 (191)
T 3on4_A 12 KERILAVAEALIQKDGY-NAFSFKDIATAINIK------TASIHYHFPSKE 55 (191)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHCCCCHH
T ss_conf 99999999999997395-637799999987829------446876069899
No 81
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=43.09 E-value=9.3 Score=18.47 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=31.7
Q ss_pred HHHCCCCCCCCCCCCE-EEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHH
Q ss_conf 8827564751778818-9995324566778867998583414588989999999
Q gi|254780856|r 118 NKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 (218)
Q Consensus 118 ~~Lgi~~gett~DG~f-tLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~ 170 (218)
++.||..-+..-|..- ..+...=+| ...-|++.||+++.+..+++++.+|+.
T Consensus 22 ~~~~i~y~~~~i~~~~~~~~~~~~~g-~~tvP~v~i~g~~i~Gf~~d~i~~L~a 74 (75)
T 1r7h_A 22 DRAGLAYNTVDISLDDEARDYVMALG-YVQAPVVEVDGEHWSGFRPERIKQLQA 74 (75)
T ss_dssp HHTTCCCEEEETTTCHHHHHHHHHTT-CBCCCEEEETTEEEESCCHHHHHHHHC
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHCC-CCCCCEEEECCEEEECCCHHHHHHHHH
T ss_conf 02499449997468989999999717-996498999999994799899999973
No 82
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=42.86 E-value=18 Score=16.53 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999986784321336999999999982668999999999850887999999997
Q gi|254780856|r 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 (218)
Q Consensus 23 ~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaT 80 (218)
...+.+.+..|.-...+..++-+|+. .|= -.+..||+.++++.+.|+.++.
T Consensus 6 ~~~l~~~L~~~glt~~e~~v~~~L~~----~~~---~t~~eia~~~~~~~~~v~~~l~ 56 (109)
T 1sfx_A 6 LGELVKALEKLSFKPSDVRIYSLLLE----RGG---MRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH----HCC---BCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHC----CCC---CCHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999985999999999999980----488---8799999997567018999999
No 83
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=42.64 E-value=17 Score=16.65 Aligned_cols=45 Identities=7% Similarity=0.211 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..|+..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|.
T Consensus 8 tr~~Il~AA~~l~~~~G~-~~~tl~~IA~~agvs------~~t~Y~~F~sKe 52 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGY-DNVTVTDIAERAGLT------RRSYFRYFPDKR 52 (195)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHTTCC------HHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999998590-406699999997909------889977779999
No 84
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.49 E-value=18 Score=16.49 Aligned_cols=34 Identities=6% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-....|.+.+..+.||..|+|+...|.
T Consensus 25 ~~~Le~~F~~~~~P~~~~~~~La~~~gL~~~~V~ 58 (89)
T 2dmp_A 25 VKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998799999999999999598999999
No 85
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=42.26 E-value=16 Score=16.81 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..+
T Consensus 33 R~~Il~aA~~l~~~~G~-~~~ti~~Ia~~agvs------~~t~Y~~F~sK 75 (218)
T 3dcf_A 33 RTQIIKVATELFREKGY-YATSLDDIADRIGFT------KPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHHHHHHTCT-TTCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCCHHHCCCC
T ss_conf 99999999999998493-517899999981989------34102414970
No 86
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=41.94 E-value=16 Score=16.98 Aligned_cols=43 Identities=9% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 10 r~~Il~aa~~l~~~~G~-~~~s~~~IA~~agvs------~~tlY~~F~~K 52 (183)
T 1zk8_A 10 LQKIVETAAEIADANGV-QEVTLASLAQTLGVR------SPSLYNHVKGL 52 (183)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------HHHHTTTCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997492-507699999988919------88998886999
No 87
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.90 E-value=16 Score=16.83 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.+++.....+=.+.|| ..-.+..||+..||+. .|||.+|.-|
T Consensus 42 R~~Il~Aa~~l~~e~G~-~~~T~~~IA~~AgvS~------~tlY~yF~sK 84 (225)
T 2id3_A 42 REAVLLAAGDALAADGF-DALDLGEIARRAGVGK------TTVYRRWGTP 84 (225)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHHHHCSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHCCCCCCH
T ss_conf 99999999999998493-4077999999979098------8871018999
No 88
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=41.78 E-value=19 Score=16.42 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|..+-...-|.+.+-..+||+.|+|+...|
T Consensus 21 ~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV 53 (77)
T 1nk2_P 21 TYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53 (77)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998779989999999999949886572
No 89
>3gyk_A 27KDA outer membrane protein; APC61738.2, thioredoxin-like, oxidoreductase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Silicibacter pomeroyi dss-3}
Probab=41.76 E-value=18 Score=16.59 Aligned_cols=82 Identities=7% Similarity=0.084 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHH------
Q ss_conf 99999999982668999999999850887999999997644320222787069996188358770892489999------
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC------ 116 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l------ 116 (218)
....+......++.+++.+..+++..++...++... . .+..+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~s~~~~~~v~~~~~~ 136 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRD------M----------------------EAPEVTAHIAQSMAL 136 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHH------T----------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH------H----------------------HHHHHHHHHHHHHHH
T ss_conf 679999985202102567999999849999999998------6----------------------348899999999999
Q ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHC-CCCHHHHHHHHHHHHC
Q ss_conf 988275647517788189995324566778867998583414-5889899999999982
Q gi|254780856|r 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 (218)
Q Consensus 117 ~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~-~lt~e~~~~il~~Lr~ 174 (218)
-+.+||. .-|++.||++++. ..+.+.+.++|++.++
T Consensus 137 a~~~gi~----------------------gTPt~~VnG~~v~g~~~~~~l~~~I~~~~~ 173 (175)
T 3gyk_A 137 AQKLGFN----------------------GTPSFVVEDALVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHTCC----------------------SSSEEEETTEEECSCCCHHHHHHHHHHHHH
T ss_pred HHHCCCC----------------------CCCEEEECCEEECCCCCHHHHHHHHHHHHH
T ss_conf 9985983----------------------288899999994299999999999999984
No 90
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=41.71 E-value=14 Score=17.33 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.++|| ..-.+..||+..|++. .|||.+|..|
T Consensus 10 r~~Il~aA~~lf~~~G~-~~~s~~~IA~~agvs~------~tlY~yF~sK 52 (206)
T 3dew_A 10 RSRLMEVATELFAQKGF-YGVSIRELAQAAGASI------SMISYHFGGK 52 (206)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998592-4178999999969598------8998881899
No 91
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.53 E-value=11 Score=17.88 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=6.8
Q ss_pred HCCCCHHHH----HHHHHHHHC
Q ss_conf 145889899----999999982
Q gi|254780856|r 157 YEDLTPERL----EEIIDAFST 174 (218)
Q Consensus 157 y~~lt~e~~----~~il~~Lr~ 174 (218)
....+.+.. ..+++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~i~~l~~ 189 (208)
T 2g3b_A 168 CKEISTEDARSHLLGAIDVVMS 189 (208)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3899878999999999999986
No 92
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=41.28 E-value=19 Score=16.37 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+.+|...-++.-|.+.+-.+.||..|||++..|.
T Consensus 33 Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~ 67 (84)
T 2kt0_A 33 QLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999998799998999999998479875746
No 93
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=41.27 E-value=19 Score=16.43 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+|..+|..-..+=.+.||= .-.+..||+..|++ ..|||.+|..+.
T Consensus 13 ~r~~Il~aA~~lf~~~G~~-~~t~~~Ia~~agvs------~~tlY~~F~~Ke 57 (205)
T 1rkt_A 13 RQAEILEAAKTVFKRKGFE-LTTMKDVVEESGFS------RGGVYLYFSSTE 57 (205)
T ss_dssp HHHHHHHHHHHHHHHHCST-TCCHHHHHHHHTSC------HHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCCCCCCCCCHH
T ss_conf 9999999999999974915-18799999986898------574115789999
No 94
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=41.20 E-value=13 Score=17.54 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999998266899999999985088799999999764432022278
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G 91 (218)
+...|-.-=+..||+.. .++.||+.++++..+|..|...-. ++.|.|
T Consensus 24 ia~~iI~~LD~~GyL~~-~~~ei~~~l~~~~~~ie~~l~~lq--~leP~G 70 (130)
T 2k9m_A 24 LALELLNYLNEKGFLSK-SVEEISDVLRCSVEELEKVRQKVL--RLEPLG 70 (130)
T ss_dssp HHHHHTTSBCTTSSBSS-CHHHHHHHTTCCHHHHHHHHHHHH--TSSSCC
T ss_pred HHHHHHHHCCCCCCCCC-CHHHHHHHCCCCHHHHHHHHHHHH--HCCCCC
T ss_conf 99999971698886278-889999880898668999999998--359990
No 95
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=40.54 E-value=18 Score=16.51 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 999999999982668999999999850887
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~ 71 (218)
||..--.+=.+.|| ..-.+..||+..|++
T Consensus 12 Il~AA~~lf~e~G~-~~~s~~~IA~~AGvs 40 (213)
T 3ni7_A 12 IVDTAVELAAHTSW-EAVRLYDIAARLAVS 40 (213)
T ss_dssp HHHHHHHHHHHSCS-TTCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHCCC
T ss_conf 99999999998697-687899999990999
No 96
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=40.40 E-value=20 Score=16.28 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+...|.+.+..+.+|..|+|++..|.
T Consensus 14 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~ 47 (68)
T 1ahd_P 14 TLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp HHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999860899999999999999699988978
No 97
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=40.07 E-value=20 Score=16.25 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+..-|.+.+.+..||+.|+|+...|.
T Consensus 29 ~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~~I~ 62 (80)
T 2da3_A 29 LEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998499999999999999790999958
No 98
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.55 E-value=16 Score=16.88 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|..=..+=.++|. -.|..||+..|++. .|||.+|..|.
T Consensus 13 R~~Il~aA~~lf~e~G~---~S~~~IA~~aGvs~------~tlY~yF~sKe 54 (213)
T 2g7g_A 13 RERIAEAALELVDRDGD---FRMPDLARHLNVQV------SSIYHHAKGRA 54 (213)
T ss_dssp HHHHHHHHHHHHHHHSS---CCHHHHHHHTTSCH------HHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 99999999999998298---62999999969687------78998879989
No 99
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=39.41 E-value=18 Score=16.49 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 4 R~~Il~AA~~l~~~~G~-~~~T~~~IA~~aGvs------~~tlY~~F~sK 46 (209)
T 3bqy_A 4 RARTVQTALDLLNESGL-DTLTMRRLAQAMDVQ------AGALYRYFAAK 46 (209)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997294-516799999997948------87999887998
No 100
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.28 E-value=20 Score=16.17 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|..--.+=.+.||= .-.+..||+..|++ ..|||.+|..|.
T Consensus 13 re~Il~aA~~l~~~~G~~-~~ti~~IA~~agvs------~~t~Y~~F~sK~ 56 (202)
T 2i10_A 13 DQVALQTAMELFWRQGYE-GTSITDLTKALGIN------PPSLYAAFGSKR 56 (202)
T ss_dssp CHHHHHHHHHHHHHHTTT-TCCHHHHHHHHTCC------HHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999986914-07699999997909------999977618999
No 101
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=39.28 E-value=20 Score=16.17 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=48.3
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999998-2668999999999850887999999997644320222787069996188358770892489999988275
Q gi|254780856|r 44 PLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 (218)
Q Consensus 44 p~L~~vQ~~-~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi 122 (218)
-.|...+++ .-+||- +++|+.+++++++|.-=.|+...|-..-.| |.| +.|.+.+++.||.
T Consensus 20 r~L~~l~~~g~~~iSS---~~La~~~gi~~~qVRKDls~fG~~G~~g~G--Y~V-------------~~L~~~i~~iLG~ 81 (212)
T 3keo_A 20 RIFKRFNTDGIEKASS---KQIADALGIDSATVRRDFSYFGELGRRGFG--YDV-------------KKLMNFFAEILND 81 (212)
T ss_dssp HHHHHHHHTTCCEECH---HHHHHHHTSCHHHHHHHHHTTGGGTTTSSS--EEH-------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCEEECH---HHHHHHHCCCHHHHHHHHHHHCCCCCCCCC--CCH-------------HHHHHHHHHHHCC
T ss_conf 9999998869868979---999999698999999899886217999989--349-------------9999999999689
Q ss_pred CCC
Q ss_conf 647
Q gi|254780856|r 123 KPL 125 (218)
Q Consensus 123 ~~g 125 (218)
...
T Consensus 82 ~~~ 84 (212)
T 3keo_A 82 HST 84 (212)
T ss_dssp TSC
T ss_pred CCC
T ss_conf 998
No 102
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=39.16 E-value=21 Score=16.16 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999998266899999999985088799999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
..|-.+-++.-|.+.+....||..|+|++..|.
T Consensus 30 ~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~ 62 (93)
T 3a01_A 30 AELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999987799999999999999688877889
No 103
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=38.98 E-value=21 Score=16.14 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+..|...-+..-|.+.+....||+.|+|+...|-
T Consensus 39 Ql~~Le~~F~~~~yp~~~~r~~La~~lgl~~~~V~ 73 (88)
T 2r5y_A 39 QTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 99999999801799987999999999787913351
No 104
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase SCO1869, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=38.93 E-value=21 Score=16.13 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred CCCCCCCCCEEEECCHH--HCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45667788679985834--1458898999999999828899987488
Q gi|254780856|r 140 CQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGP 184 (218)
Q Consensus 140 CLG~C~~AP~~~Vn~~~--y~~lt~e~~~~il~~Lr~gk~~~~k~g~ 184 (218)
=+|.- -.|.+.||+++ -|-..++.+.++|+.+.+.+.+...+-+
T Consensus 178 ~~GI~-GvPtfvi~~~~~i~Gaqp~e~~~~~l~~~~~~~~~~~~~~~ 223 (239)
T 3gl5_A 178 QLGAT-GVPFFVLDRAYGVSGAQPAEVFTQALTQAWGERTPLKLIDD 223 (239)
T ss_dssp HTTCC-SSSEEEETTTEEEESSCCHHHHHHHHHHHHHTCCCCCCCC-
T ss_pred HCCCC-CCCEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 86994-24779999988886899999999999999975478666788
No 105
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=38.82 E-value=16 Score=16.92 Aligned_cols=43 Identities=7% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.+||.+-..+=.+.| +..-.+..||+..||+ ..|||.+|..+
T Consensus 32 r~~Il~aA~~lf~~~G-~~~~si~~IA~~Agvs------~~tiY~yF~sK 74 (230)
T 2iai_A 32 PETLLSVAVQVFIERG-YDGTSMEHLSKAAGIS------KSSIYHHVTGK 74 (230)
T ss_dssp CSCHHHHHHHHHHHHC-TTTCCHHHHHHHHTSC------HHHHTTTCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------CCHHHCCCCCH
T ss_conf 9999999999999859-2627299999985829------10153058999
No 106
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.51 E-value=21 Score=16.09 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+..+.||..++|+...|.
T Consensus 19 ~~~Le~~F~~~~~P~~~~~~~LA~~~gL~~~qV~ 52 (75)
T 2da5_A 19 LRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699989999999999297999999
No 107
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=38.37 E-value=19 Score=16.39 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
++.+||..-..+=.+.||= .-.+..||+..|++ ..|||.+|..|.
T Consensus 25 ~r~~Il~aA~~l~~~~G~~-~~ti~~IA~~agvs------~~tlY~yF~sK~ 69 (216)
T 1t56_A 25 RELAILATAENLLEDRPLA-DISVDDLAKGAGIS------RPTFYFYFPSKE 69 (216)
T ss_dssp HHHHHHHHHHHHHHHSCGG-GCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHCCCC------HHHHHHHCCCHH
T ss_conf 9999999999999970924-07899999883999------999957639878
No 108
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=38.26 E-value=19 Score=16.37 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|..-..+=.+.||- .-.+..||+..|++. .|||.+|..+
T Consensus 24 r~~Il~aA~~l~~~~G~~-~~t~~~IA~~agvs~------~t~Y~~F~sK 66 (207)
T 3bjb_A 24 HVRMLEAAIELATEKELA-RVQMHEVAKRAGVAI------GTLYRYFPSK 66 (207)
T ss_dssp HHHHHHHHHHHHHHSCGG-GCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCH------HHHHHCCCCH
T ss_conf 999999999999974935-277999999989099------8861318999
No 109
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=37.98 E-value=7.9 Score=18.94 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 15 re~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs------~~tiY~yF~sK 57 (210)
T 2qco_A 15 QEKIKAVALELFLTKGY-QETSLSDIIKLSGGS------YSNIYDGFKSK 57 (210)
T ss_dssp HHHHHHHHHHHHHHTTT-TTCCHHHHHHHHCTT------CTTCSSSTTSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997491-528799999986878------40688868985
No 110
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=37.76 E-value=13 Score=17.55 Aligned_cols=43 Identities=7% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..||..-..+=.+.||- .-.+..||+..||+ ..|||.+|..+
T Consensus 14 R~~Il~aa~~l~~~~G~~-~~ti~~Ia~~agvs------~~t~Y~yF~sK 56 (197)
T 2hyt_A 14 RATLLATARKVFSERGYA-DTSMDDLTAQASLT------RGALYHHFGDK 56 (197)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCHHHHHHHHTCC------TTHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCHHHHCCCCH
T ss_conf 999999999999986915-18799999983859------24065508999
No 111
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=37.63 E-value=18 Score=16.54 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCCEEEECCHHHCCCCHHHHHHHHH
Q ss_conf 78867998583414588989999999
Q gi|254780856|r 145 VNAPMVMIGKDTYEDLTPERLEEIID 170 (218)
Q Consensus 145 ~~AP~~~Vn~~~y~~lt~e~~~~il~ 170 (218)
..-|++.||+++.+.-+.+++.++|.
T Consensus 66 ~~vP~i~i~~~~igG~~~~~i~~lLk 91 (92)
T 3ic4_A 66 YSVPVVVKGDKHVLGYNEEKLKELIR 91 (92)
T ss_dssp SCSCEEEETTEEEESCCHHHHHHHHH
T ss_pred CEEEEEEECCEEEECCCHHHHHHHHC
T ss_conf 65879999999997999899999857
No 112
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=37.49 E-value=22 Score=15.99 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-...-|.+.+..+.||..++|+...|.
T Consensus 37 l~~Le~~F~~n~yPs~~~~~~LA~~~gLs~~qV~ 70 (96)
T 3nar_A 37 LHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699989999999999698999999
No 113
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=37.34 E-value=13 Score=17.57 Aligned_cols=40 Identities=8% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 36999999999982668999999999850887999999997644320
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
..+|...-.+=.+.|| ..-.+..||+..|++. .|||.+|.
T Consensus 17 ~~Il~aA~~l~~~~G~-~~~s~~~Ia~~agvs~------~tlY~~F~ 56 (215)
T 3e7q_A 17 ALLIEATLACLKRHGF-QGASVRKICAEAGVSV------GLINHHYD 56 (215)
T ss_dssp HHHHHHHHHHHHHHHH-HHCCHHHHHHHHTCCH------HHHHHHCS
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 9999999999997490-4077999999979398------89998868
No 114
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=37.31 E-value=22 Score=15.97 Aligned_cols=40 Identities=8% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6999-99999998266899999999985088799999999764432022
Q gi|254780856|r 41 AVIP-LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 41 alip-~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+|. ++.+++ +.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 6 ~Il~aA~~l~~-~~G~-~~~ti~~Ia~~agvs------~~t~Y~~F~sK 46 (194)
T 3bqz_B 6 KILGVAKELFI-KNGY-NATTTGEIVKLSESS------KGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHH-HHTT-TTCCHHHHHHHTTCC------HHHHHHHTSSH
T ss_pred HHHHHHHHHHH-HHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999-7693-306799999997909------99881437899
No 115
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=37.31 E-value=22 Score=15.97 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+..||..-..+=.+.||- .-.+..||+..||+ ..|||.+|..+
T Consensus 44 tr~~Il~AA~~l~~~~G~~-~~ti~~IA~~aGvS------~~tlY~yF~sK 87 (229)
T 3bni_A 44 RLTRILDACADLLDEVGYD-ALSTRAVALRADVP------IGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHHHHHHHCTT-TCCHHHHHHHHTCC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999999984901-06799999995969------99999986999
No 116
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=37.26 E-value=15 Score=17.10 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 36999999999982668999999999850887999999997644320222
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+-
T Consensus 20 ~~Il~aA~~lf~~~G~-~~~s~~~IA~~agvs------~~tlY~~F~sKe 62 (218)
T 3gzi_A 20 DKLILAARNLFIERPY-AQVSIREIASLAGTD------PGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHHHTSCC-SCCCHHHHHHHHTSC------THHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 9999999999997491-416499999987919------768887458899
No 117
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=37.25 E-value=22 Score=15.96 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCCEEEECCHHH-CCCCHHHHHHHHHHH
Q ss_conf 886799858341-458898999999999
Q gi|254780856|r 146 NAPMVMIGKDTY-EDLTPERLEEIIDAF 172 (218)
Q Consensus 146 ~AP~~~Vn~~~y-~~lt~e~~~~il~~L 172 (218)
--|++.||++++ +..+.+.+.++|+.|
T Consensus 155 gTPT~iInGk~~v~~~~~~~~~~~i~~l 182 (193)
T 2rem_A 155 GTPTIVVNGRYMVTGHDFEDTLRITDYL 182 (193)
T ss_dssp SSSEEEETTTEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEECCEEECCCCCHHHHHHHHHHH
T ss_conf 2677999999965899999999999999
No 118
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=37.13 E-value=22 Score=15.95 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 33699999999-9982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRA-QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~v-Q~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..|+.++... -++.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 21 k~~i~~a~~~Lf~~~kG~-~~~Sv~dIa~~AgVs------~~t~Y~~F~sK~ 65 (185)
T 3o60_A 21 QTKLYTVLERFYVEDRTF-ESISIKDLCEQARVS------RATFYRHHKEII 65 (185)
T ss_dssp HHHHHHHHHHHHHTTCCT-TTCCHHHHHHHHTCC------HHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCC------CCCCCHHCCCHH
T ss_conf 999999999999880893-108799999987888------666223469899
No 119
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.20 E-value=23 Score=15.85 Aligned_cols=24 Identities=4% Similarity=-0.008 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 668999999999850887999999
Q gi|254780856|r 54 GWVSRAAIEVVANILDMAYIRVLE 77 (218)
Q Consensus 54 G~Ip~eai~~iA~~L~i~~~~V~~ 77 (218)
.|.+.+.++.||..|||+...|.-
T Consensus 26 ~yP~~~~r~~LA~~lgl~~~~V~~ 49 (73)
T 2hi3_A 26 KHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 993999999999995998778645
No 120
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=35.97 E-value=13 Score=17.53 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..++..-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 11 ~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~t~Y~~F~~K 52 (195)
T 3pas_A 11 IAFLEATVREVADHGF-SATSVGKIAKAAGLSP------ATLYIYYEDK 52 (195)
T ss_dssp HHHHHHHHHHHHHHHH-HHCCHHHHHHHHTSCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCC------CCHHHCCCCH
T ss_conf 9999999999997393-4075999999869191------4103429999
No 121
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=35.38 E-value=11 Score=17.97 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 26 r~~Il~aA~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~Y~~F~sK~ 69 (214)
T 2oer_A 26 VASILEAAVQVLASEGA-QRFTTARVAERAGVS------IGSLYQYFPNKA 69 (214)
T ss_dssp HHHHHHHHHHC-------CCCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 99999999999997494-517799999998909------989998819999
No 122
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=35.35 E-value=24 Score=15.77 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
++..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+-
T Consensus 11 rr~~Il~aa~~l~~~~G~-~~~s~~~IA~~agvs------~~t~Y~~F~~K~ 55 (197)
T 2f07_A 11 KYEKILQAAIEVISEKGL-DKASISDIVKKAGTA------QGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSC------HHHHHHHCSSST
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCHHHHHCCCHH
T ss_conf 999999999999997391-407699999987869------115888649999
No 123
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans DSM12444}
Probab=35.35 E-value=24 Score=15.77 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCEEEECCHHH-CCCCHHHHHHHH-HHHHCCC
Q ss_conf 86799858341-458898999999-9998288
Q gi|254780856|r 147 APMVMIGKDTY-EDLTPERLEEII-DAFSTGQ 176 (218)
Q Consensus 147 AP~~~Vn~~~y-~~lt~e~~~~il-~~Lr~gk 176 (218)
-|.+.||++++ +..+.+.+.++| +.|-+|.
T Consensus 169 TPt~iIng~~v~G~~~~~~l~~~I~~~l~e~~ 200 (205)
T 3gmf_A 169 TPSFMIDGILLAGTHDWASLRPQILARLNEGH 200 (205)
T ss_dssp SSEEEETTEECTTCCSHHHHHHHHHHHHTC--
T ss_pred CCEEEECCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 78899999995088999999999999995788
No 124
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=35.29 E-value=21 Score=16.13 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..++..-..+=.+.|| ..-.+..||+..||+ ..|||.+|..+
T Consensus 12 r~~Il~aa~~l~~~~G~-~~~si~~Ia~~agvs------~~tiY~yF~sK 54 (196)
T 3col_A 12 QVKIQDAVAAIILAEGP-AGVSTTKVAKRVGIA------QSNVYLYFKNK 54 (196)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------HHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997591-407799999996919------98885876999
No 125
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=35.12 E-value=19 Score=16.38 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|.
T Consensus 31 tR~~il~AA~~lf~~~G~-~~~T~~~IA~~aGvs------~~tlY~~F~~K~ 75 (226)
T 2pz9_A 31 TRQRIVAAAKEEFARHGI-AGARVDRIAKQARTS------KERVYAYFRSKE 75 (226)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHCCHHHHHHHTTSC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999998592-418899999996938------757978859999
No 126
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=35.08 E-value=24 Score=15.74 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
++..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+-
T Consensus 12 ~re~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvs------~~tlY~yF~sK~ 56 (216)
T 3f0c_A 12 KLELIINAAQKRFAHYGL-CKTTMNEIASDVGMG------KASLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHHHHHHHCS-SSCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999997490-307899999985988------527987579999
No 127
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=35.06 E-value=24 Score=15.74 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.|..||.....+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 12 tr~~Il~aA~~l~~~~G~-~~~si~~Ia~~agvs------~~tiY~~F~sK 55 (210)
T 2wui_A 12 TRDGILDAAERVFLEKGV-GTTAMADLADAAGVS------RGAVYGHYKNK 55 (210)
T ss_dssp HHHHHHHHHHHHHHHSCT-TTCCHHHHHHHHTSC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCCCCCCCCH
T ss_conf 999999999999997591-617599999987879------77444478999
No 128
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=35.01 E-value=16 Score=16.96 Aligned_cols=43 Identities=12% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+.+++.....+=.+.||= .-.+..||+..||+. .|||.+|.-+
T Consensus 14 r~~I~~aa~~l~~~~G~~-~~ti~~Ia~~agvs~------~t~Y~~F~sK 56 (177)
T 3kkc_A 14 KVAIYNAFISLLQENDYS-KITVQDVIGLANVGR------STFYSHYESK 56 (177)
T ss_dssp HHHHHHHHHHHTTTSCTT-TCCHHHHHHHHCCCH------HHHTTTCSST
T ss_pred HHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999886974-076999999979787------7743658988
No 129
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=34.82 E-value=19 Score=16.43 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.8
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999850887
Q gi|254780856|r 61 IEVVANILDMA 71 (218)
Q Consensus 61 i~~iA~~L~i~ 71 (218)
+..||+..|++
T Consensus 36 ~~~IA~~aGvs 46 (231)
T 2qib_A 36 IDEIASAAGIS 46 (231)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHCCC
T ss_conf 99999997939
No 130
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=34.44 E-value=18 Score=16.54 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..++..-..+=.+.||= .-.+..||+..|++ ..|||.+|..|
T Consensus 16 r~~Il~aa~~lf~e~G~~-~~t~~~Ia~~agvs------~~tlY~~F~~K 58 (203)
T 3ccy_A 16 RDTIIERAAAMFARQGYS-ETSIGDIARACECS------KSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHHHHHTCTT-TSCHHHHHHHTTCC------GGGGTTTCSCH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCCCHHCCCCH
T ss_conf 999999999999984945-27899999985898------67730248999
No 131
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=33.96 E-value=25 Score=15.62 Aligned_cols=44 Identities=9% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++. .|||.+|..|.
T Consensus 16 R~~Il~aa~~l~~~~G~-~~~s~~~IA~~agvs~------~t~Y~~F~sK~ 59 (212)
T 3knw_A 16 RQHILDSGFHLVLRKGF-VGVGLQEILKTSGVPK------GSFYHYFESKE 59 (212)
T ss_dssp HHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHHCCHH
T ss_conf 99999999999997194-6387999999979099------99988837899
No 132
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=33.96 E-value=25 Score=15.62 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 20 r~~Il~aA~~lf~~~G~-~~~si~~IA~~agvs------~~tiY~yF~sK 62 (212)
T 1pb6_A 20 KKAILSAALDTFSQFGF-HGTRLEQIAELAGVS------KTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSC------HHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999998591-528899999997919------87897877999
No 133
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=33.91 E-value=25 Score=15.61 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.|..||..-..+=.+.|| ..-.+..||+..|++. .|||.+|..|
T Consensus 9 tR~~Il~AA~~l~~e~G~-~~~t~~~IA~~agvs~------~tlY~~F~sK 52 (202)
T 2d6y_A 9 TKARIFEAAVAEFARHGI-AGARIDRIAAEARANK------QLIYAYYGNK 52 (202)
T ss_dssp HHHHHHHHHHHHHHHHTT-TSCCHHHHHHHHTCCH------HHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999997590-4087999999979098------8996886999
No 134
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=33.83 E-value=14 Score=17.29 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999998508879999999976443202
Q gi|254780856|r 58 RAAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 58 ~eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
.-.+..||+..|++ ..|||.+|..
T Consensus 25 ~~s~~~Ia~~agvs------~~t~Y~~F~s 48 (202)
T 2id6_A 25 RATTDEIAEKAGVA------KGLIFHYFKN 48 (202)
T ss_dssp HCCHHHHHHHHTCC------THHHHHHHSS
T ss_pred CCCHHHHHHHHCCC------HHHHHHCCCC
T ss_conf 16499999987909------9999840899
No 135
>1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.78 E-value=25 Score=15.60 Aligned_cols=34 Identities=21% Similarity=-0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+-+..||..++|++..|.
T Consensus 20 ~~~Le~~F~~~~~P~~~~~~~LA~~~~l~~~~V~ 53 (67)
T 1ocp_A 20 RWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53 (67)
T ss_dssp HHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999843699799999999999589988977
No 136
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=33.18 E-value=25 Score=15.54 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..||..-..+=.+.|| ..-.+..||+..||+. .|||.+|..+.
T Consensus 16 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~------~tiY~~F~~K~ 59 (199)
T 3crj_A 16 TEEIMQATYRALREHGY-ADLTIQRIADEYGKST------AAVHYYYDTKD 59 (199)
T ss_dssp HHHHHHHHHHHHHHHTT-TTCCHHHHHHHHTSCH------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 99999999999997490-4077999999979199------99988858999
No 137
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.40 E-value=26 Score=15.45 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=23.1
Q ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999-826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~-~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-. ..-|.+.+..+.||..|+|+...|
T Consensus 19 ~~~Le~~F~~~n~~P~~~~~~~LA~~lgl~~~qV 52 (71)
T 1wi3_A 19 LGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52 (71)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999998479959999999999959998996
No 138
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=32.38 E-value=26 Score=15.45 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 699999999998266899999999985088799999
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.-+.+|..+-+..-|.+.+....||+.|||+...|.
T Consensus 107 ~q~~~L~~~f~~~~~P~~~~~~~la~~l~l~~~~V~ 142 (164)
T 2d5v_A 107 VQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142 (164)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999872799899999999999692989999
No 139
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.33 E-value=7.8 Score=19.01 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 31 tR~~Il~aA~~l~~~~G~-~~~T~~~IA~~aGvs------~~tlY~~F~~K 74 (212)
T 2np3_A 31 TREAILTAARVCFAERGF-DATSLRRIAETAGVD------QSLVHHFYGTK 74 (212)
T ss_dssp ----CHHHHHHHC----------------------------------CCC-
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999998491-306799999997819------75566878299
No 140
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=32.15 E-value=26 Score=15.43 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=5.9
Q ss_pred HHCCCCHHHHHHH
Q ss_conf 4145889899999
Q gi|254780856|r 156 TYEDLTPERLEEI 168 (218)
Q Consensus 156 ~y~~lt~e~~~~i 168 (218)
...+.+.+.+.+.
T Consensus 188 ~~~~~~~e~~~~~ 200 (235)
T 2fbq_A 188 FGVNTSTEQVMHL 200 (235)
T ss_dssp HSCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 6778899999999
No 141
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=31.64 E-value=27 Score=15.37 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|.++|..-..+=.+.||- .-.+..||+..|++. .|||.+|..+.
T Consensus 31 tr~~Il~AA~~l~~~~G~~-~~si~~IA~~agvs~------~tiY~~F~sK~ 75 (222)
T 3bru_A 31 AHQSLIRAGLEHLTEKGYS-SVGVDEILKAARVPK------GSFYHYFRNKA 75 (222)
T ss_dssp HHHHHHHHHHHHHHHSCTT-TCCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCC------HHHHHHCCCHH
T ss_conf 9999999999999985904-077999999868990------26988569899
No 142
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=31.61 E-value=27 Score=15.37 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|-..-+..-|.+.+..+.||..|+|++..|-
T Consensus 25 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qVk 58 (77)
T 1puf_A 25 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999987799999999999999099878867
No 143
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.16 E-value=27 Score=15.32 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=5.4
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999850887
Q gi|254780856|r 61 IEVVANILDMA 71 (218)
Q Consensus 61 i~~iA~~L~i~ 71 (218)
+..||+..||+
T Consensus 32 i~~Ia~~agvs 42 (203)
T 2np5_A 32 VREVAKRAGVS 42 (203)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999997909
No 144
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=30.73 E-value=28 Score=15.27 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699999999998266899999999985088799999999764432022
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|.-|
T Consensus 7 ~Il~aA~~lf~~~G~-~~~tv~~IA~~aGvs------~~tlY~hF~sK 47 (207)
T 2vke_A 7 SVIDAALELLNETGI-DGLTTRKLAQKLGIE------QPTLYWHVKNK 47 (207)
T ss_dssp HHHHHHHHHHHHHCG-GGCCHHHHHHHHTCC------HHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999997491-417899999997919------76998878998
No 145
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=30.57 E-value=22 Score=16.00 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..||..-..+=.+.||= .-.+..||+.+||+ ..|||.+|..|.
T Consensus 31 re~Il~AA~~l~~e~G~~-~~t~~~IA~~aGVs------~~tlY~yF~sKe 74 (241)
T 2hxi_A 31 TEQILDAAAELLLAGDAE-TFSVRKLAASLGTD------SSSLYRHFRNKT 74 (241)
T ss_dssp HHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSC------HHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999972913-05399999997908------889999879999
No 146
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, periplasm, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=30.53 E-value=25 Score=15.55 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CCCEEEECCHHHCC----CCHHHHHHHHHHHHC
Q ss_conf 88679985834145----889899999999982
Q gi|254780856|r 146 NAPMVMIGKDTYED----LTPERLEEIIDAFST 174 (218)
Q Consensus 146 ~AP~~~Vn~~~y~~----lt~e~~~~il~~Lr~ 174 (218)
--|++.||+++..+ .+.+.+.++|+.|-+
T Consensus 152 gTPtfiInGk~~~~~~~~~~~e~l~~~i~~L~~ 184 (192)
T 3h93_A 152 GVPTMVVNGKYRFDIGSAGGPEETLKLADYLIE 184 (192)
T ss_dssp SSSEEEETTTEEEEHHHHTSHHHHHHHHHHHHH
T ss_pred CCCEEEECCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 278899989886077567899999999999999
No 147
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=30.43 E-value=17 Score=16.63 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99998678432133699999999998266899999999985088799999999764432022
Q gi|254780856|r 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 27 ~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.....+-|+ +|.+||..-..+=.+.| +..-.+..||+..|++ ..|||.+|..|
T Consensus 20 ~g~~~r~~e--rR~~Il~AA~~l~~~~G-~~~~Ti~~IA~~Agvs------~~tlY~~F~sK 72 (215)
T 2qko_A 20 QGHMAQNPE--RRAALVNAAIEVLAREG-ARGLTFRAVDVEANVP------KGTASNYFPSR 72 (215)
T ss_dssp -------CH--HHHHHHHHHHHHHHHTC-TTTCCHHHHHHHSSST------TTCHHHHCSCH
T ss_pred CCCCCCCHH--HHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 898899989--99999999999999859-1407899999987868------40698884798
No 148
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=30.40 E-value=14 Score=17.39 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|.-|
T Consensus 36 ~R~~Il~aA~~l~~~~G~-~~~t~~~IA~~agvs------~~tiY~yF~sK 79 (237)
T 3kkd_A 36 RRQAILDAAMRLIVRDGV-RAVRHRAVAAEAQVP------LSATTYYFKDI 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------TTTC-----CH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999998492-407799999998868------57798876999
No 149
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.17 E-value=20 Score=16.18 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..++.+....=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 15 r~~Il~Aa~~l~~~~G~-~~~Tv~~Ia~~agvs------~~t~Y~yF~sK 57 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAY-HQISVSDIMQTAKIR------RQTFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTSC------GGGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997696-306899999986888------61798877399
No 150
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=30.06 E-value=17 Score=16.69 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..+|..-..+=.+.| +..-.+..||+..|++ ..|||.+|..+.
T Consensus 12 ~R~~Il~aa~~lf~~~G-~~~~t~~~Ia~~agvs------~~~iY~~F~sK~ 56 (204)
T 3eup_A 12 TRQFIIESTAPVFNVKG-LAGTSLTDLTEATNLT------KGSIYGNFENKE 56 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHTCC------HHHHTTTSSSHH
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 99999999999999739-4628899999997909------999977645647
No 151
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=29.92 E-value=29 Score=15.18 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH-HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 36999999999-982668999999999850887999999997644320
Q gi|254780856|r 40 SAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 40 salip~L~~vQ-~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
...-++|..++ +.+|+||. ..... .-.|.-......++.++.
T Consensus 36 ~~~k~~le~~~~~~~G~vPN-~~~~l----a~~P~~l~a~~~l~~~~~ 78 (207)
T 3lvy_A 36 ERVKETLRTVKKDNGGYIPN-LIGLL----ANAPTALETYRTVGEINR 78 (207)
T ss_dssp HHHHHHHHHHHHHTTSCCCH-HHHHH----TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHH-HHHHH----HCCHHHHHHHHHHHHHHH
T ss_conf 99999999999880598809-99998----739999999999999972
No 152
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=29.92 E-value=24 Score=15.70 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHH--HHHH
Q ss_conf 99999999998--2668999999999850887999999997644320222787069996188358770892489--9999
Q gi|254780856|r 42 VIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI--EVCR 117 (218)
Q Consensus 42 lip~L~~vQ~~--~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~--~~l~ 117 (218)
....|...|.. .+|...+.+..+|+.+++...+...... .+... ... . ...+. ..+.
T Consensus 82 ~~~~lf~~~~~~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~---~~~~~---~~~-----------~--~~~v~~~~~~~ 142 (186)
T 3bci_A 82 FQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIK---DYKTK---DSK-----------S--WKAAEKDKKIA 142 (186)
T ss_dssp HHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHH---HHHST---TCH-----------H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH---CHHHH---HHH-----------H--HHHHHHHHHHH
T ss_conf 99999876444214667588999999982999999999985---74321---289-----------9--99999999999
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHC-CCCHHHHHHHHHHHHCCC
Q ss_conf 88275647517788189995324566778867998583414-588989999999998288
Q gi|254780856|r 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFSTGQ 176 (218)
Q Consensus 118 ~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~-~lt~e~~~~il~~Lr~gk 176 (218)
+.+||. --|.+.|||+++. ..+.+.+.++|+++-+.+
T Consensus 143 ~~~gv~----------------------gTPt~iInGk~~~g~~~~~~l~~~id~~lk~~ 180 (186)
T 3bci_A 143 KDNHIK----------------------TTPTAFINGEKVEDPYDYESYEKLLKDKIKLE 180 (186)
T ss_dssp HHTTCC----------------------SSSEEEETTEECSCTTCHHHHHHHHHC-----
T ss_pred HHCCCC----------------------CCCEEEECCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 985984----------------------38889899999239899999999999999864
No 153
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=29.60 E-value=23 Score=15.86 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 6999999999982668999999999850887999999997644320
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
++|..-..+=.+.|| ..-.+..||+.+|++ ..|||.+|.
T Consensus 8 ~Il~AA~~lf~~~G~-~~~sv~~IA~~aGvs------~~tlY~~F~ 46 (207)
T 2vpr_A 8 QVIDNALILLNEVGI-EGLTTRKLAQKIGVE------QPTLYWHVK 46 (207)
T ss_dssp HHHHHHHHHHHHHHH-HHCCHHHHHHHHTCC------HHHHTTTCC
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCC
T ss_conf 999999999998493-527899999987848------768999889
No 154
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=29.44 E-value=29 Score=15.13 Aligned_cols=41 Identities=17% Similarity=0.384 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 336999999999982668999999999850887999999997644320
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
|.+||..--.+=.+.|| ..-.+..||+..||+. .|||.+|.
T Consensus 43 R~~IldaA~~lf~~~G~-~~~sv~~IA~~AGvs~------~t~Y~hF~ 83 (273)
T 3c07_A 43 RALILETAMRLFQERGY-DRTTMRAIAQEAGVSV------GNAYYYFA 83 (273)
T ss_dssp HHHHHHHHHHHHHHTCS-TTCCHHHHHHHHTSCH------HHHHHHCS
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 99999999999997294-4178999999989199------99999958
No 155
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=29.21 E-value=30 Score=15.10 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 458898999999999828
Q gi|254780856|r 158 EDLTPERLEEIIDAFSTG 175 (218)
Q Consensus 158 ~~lt~e~~~~il~~Lr~g 175 (218)
...+.+.+..+++.+-.|
T Consensus 178 ~~~~~~~~~~~~~~l~~g 195 (212)
T 2ras_A 178 ERLSEDKLARIVDAVFDG 195 (212)
T ss_dssp GGCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 777999999999999987
No 156
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=28.98 E-value=26 Score=15.49 Aligned_cols=43 Identities=5% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..||..-..+=.+.|| ..-.+..||+..|++. .|||.+|..|
T Consensus 16 r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs~------~tlY~~F~sK 58 (156)
T 3ljl_A 16 IQKIMDAVVDQLLRLGY-DKMSYTTLSQQTGVSR------TGISHHFPKK 58 (156)
T ss_dssp HHHHHHHHHHHHHHTHH-HHCCHHHHHHHHTCCH------HHHHHHCSST
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999987190-3077999999869888------6998987799
No 157
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.33 E-value=19 Score=16.37 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999826689999999998508879999
Q gi|254780856|r 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 45 ~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+|...-...-|.+.+....+|..|||+...|
T Consensus 17 ~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV 47 (68)
T 1yz8_P 17 QLEATFQRNRYPDMSTREEIAVWTNLTEARV 47 (68)
T ss_dssp HHHHHHTTCSSCCTTTTTHHHHHTTSCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999998669999999999999949298997
No 158
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.10 E-value=31 Score=14.98 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.+||..-..+=.+.||= .-.+..||+.+||+. .|||.+|.-|
T Consensus 18 R~~Il~aA~~l~~~~G~~-~~t~~~IA~~aGvs~------~~lY~~F~sK 60 (216)
T 2oi8_A 18 RAEIKDHAWEQIATAGAS-ALSLNAIAKRMGMSG------PALYRYFDGR 60 (216)
T ss_dssp HHHHHHHHHHHHHHHCTT-SCCHHHHHHHTTCCH------HHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999970965-388999999979798------8999887999
No 159
>1z67_A Hypothetical protein S4005; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.45A {Shigella flexneri 2a str} SCOP: a.259.1.1
Probab=28.09 E-value=31 Score=14.97 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHH--HH-CCCCCC
Q ss_conf 8999999999850887999999997644--32-022278
Q gi|254780856|r 56 VSRAAIEVVANILDMAYIRVLEIATFYT--QF-QLSPVG 91 (218)
Q Consensus 56 Ip~eai~~iA~~L~i~~~~V~~VaTFY~--~f-~~~P~G 91 (218)
+.++.++.+|..+++++.++...++.|= +. +..|-|
T Consensus 73 lg~~~l~~lA~~~Gl~~~~~~~~La~~LP~~VD~lTP~G 111 (135)
T 1z67_A 73 LGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQG 111 (135)
T ss_dssp HCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 197999999999890999999999999779997019899
No 160
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=27.91 E-value=31 Score=14.95 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|.++|..--.+=.+.||= .-.+..||+..|++ ..|||.+|..|
T Consensus 14 R~~Il~aA~~l~~~~G~~-~~ti~~Ia~~agvs------~~t~Y~~F~sK 56 (198)
T 3cjd_A 14 REKLIDLAEAQIEAEGLA-SLRARELARQADCA------VGAIYTHFQDL 56 (198)
T ss_dssp HHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSC------HHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCHHHHCCCCH
T ss_conf 999999999999970934-05799999982889------32102307977
No 161
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=27.78 E-value=31 Score=14.94 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 699999999998266899999999985088799999
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.-+..|...-+...|++.+..+.||..|+|+...|.
T Consensus 44 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~ 79 (97)
T 1b72_A 44 RQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999998689769999999887199965702
No 162
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=27.59 E-value=30 Score=15.07 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|..-..+=.+.|| ..-.|..||+.+|++ ..|+|.+|.-|
T Consensus 19 ~~Il~aA~~lf~e~G~-~~~t~~~IA~~aGvs------~~tlY~~F~sK 60 (237)
T 2hxo_A 19 ERIVGAAVELLDTVGE-RGLTFRALAERLATG------PGAIYWHITGK 60 (237)
T ss_dssp HHHHHHHHHHHHHTTT-TTCCHHHHHHHHTSC------GGGGGGTCCCH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCCCCCCCCH
T ss_conf 9999999999998393-527799999987849------56530108898
No 163
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=27.12 E-value=32 Score=14.86 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-HCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998-266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~-~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+++|...-.. ..|.+.+.+..||+.|+|+..+|.
T Consensus 12 ~~iLe~~f~~~~~~P~~~~~~~La~~lgl~~~qV~ 46 (64)
T 1x2m_A 12 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999885899299999999999498989988
No 164
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=26.92 E-value=32 Score=14.84 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCC
Q ss_conf 982668999999999850887999999997644320222787069996188358770892489999988275647
Q gi|254780856|r 51 EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 (218)
Q Consensus 51 ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~g 125 (218)
...|.|++++++.+.+.| ..|-..++..++ .+..-|.|+.--...+++++++.+++++|++..
T Consensus 53 ~~~g~l~~~~i~~~~~~L----------~~f~~~~~~~~v--~~i~~vATsA~R~A~N~~~~~~~i~~~~Gi~i~ 115 (315)
T 1t6c_A 53 KETGRLQEDRIEETIQVL----------KEYKKLIDEFKV--ERVKAVATEAIRRAKNAEEFLERVKREVGLVVE 115 (315)
T ss_dssp HHHSSCCHHHHHHHHHHH----------HHHHHHHHHTTC--SEEEEEECHHHHTSTTHHHHHHHHHHHTCCCEE
T ss_pred CCCCCCCHHHHHHHHHHH----------HHHHHHHHHHCC--CCEEEEEHHHHHHCCCHHHHHHHHHHHHCCEEE
T ss_conf 315980999999999999----------999999875074--619997029988475665999999999698589
No 165
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.83 E-value=32 Score=14.83 Aligned_cols=35 Identities=6% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 3699999999998266899999999985088799999
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.++|.-+.. ....|.+.+.++.||..++|+..+|.
T Consensus 20 ~~~Le~~f~--~~~~~P~~~~~~~LA~~~~l~~~qV~ 54 (72)
T 2cqx_A 20 NDTLEKVFV--SVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp TTHHHHHHH--HTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHH--HCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 499999998--86899899999999999794999999
No 166
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=26.72 E-value=33 Score=14.82 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 58898999999999828
Q gi|254780856|r 159 DLTPERLEEIIDAFSTG 175 (218)
Q Consensus 159 ~lt~e~~~~il~~Lr~g 175 (218)
.+|++.. +.++.|++.
T Consensus 197 ~lt~~~r-~~~~~l~~~ 212 (228)
T 3nnr_A 197 YLTPEYR-ERVLALREK 212 (228)
T ss_dssp GBCHHHH-HHHHHHHHT
T ss_pred CCCHHHH-HHHHHHHHH
T ss_conf 2899999-999999987
No 167
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=26.35 E-value=24 Score=15.65 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 9 R~~il~aa~~l~~~~G~-~~~si~~Ia~~agvs------~~~~Y~~F~sK 51 (180)
T 2fd5_A 9 RARILGAATQALLERGA-VEPSVGEVMGAAGLT------VGGFYAHFQSK 51 (180)
T ss_dssp HHHHHHHHHHHHHHHTT-TSCCHHHHHHHTTCC------GGGGGGTCSCH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCHHHHCCCH
T ss_conf 99999999999987094-406799999986889------76176765899
No 168
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=26.25 E-value=27 Score=15.38 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCE-EEECCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8867-9985834145889899999999982889998748847
Q gi|254780856|r 146 NAPM-VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 (218)
Q Consensus 146 ~AP~-~~Vn~~~y~~lt~e~~~~il~~Lr~gk~~~~k~g~~~ 186 (218)
..|. +.|+.+-+..|+.+.+.++++++++.+.....+||.-
T Consensus 247 i~~~v~ii~~~G~~~l~~~ev~~~~~~i~~~r~~~~~~g~~~ 288 (291)
T 2jay_A 247 IFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDG 288 (291)
T ss_dssp -CCEEEEEETTEEEECCHHHHHHHHHHC--------------
T ss_pred CEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 004799984896199699999999999997661367899988
No 169
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=26.25 E-value=18 Score=16.58 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHCCCCCCCCCCCC-EEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHH
Q ss_conf 882756475177881-89995324566778867998583414588989999999
Q gi|254780856|r 118 NKIHQKPLHRNSDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 (218)
Q Consensus 118 ~~Lgi~~gett~DG~-ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~ 170 (218)
++.||+.-+..-|.. -..++..=+|. ..-|++.||+++.+..+|+++.+|..
T Consensus 22 ~~~~i~y~~idi~~~~~~~~~~~~~g~-~tvP~v~i~~~~i~Gf~~d~l~~L~~ 74 (81)
T 1h75_A 22 ENRGFDFEMINVDRVPEAAEALRAQGF-RQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_dssp HHTTCCCEEEETTTCHHHHHHHHHTTC-CSSCEEEETTEEEESCCHHHHGGGSC
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHCC-CEECEEEECCEEEECCCHHHHHHHHH
T ss_conf 845885599999989999999998599-85158999999997989899999998
No 170
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=26.12 E-value=22 Score=15.97 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 336999999999982668999999999850887999999997644320
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
+..||..-..+=.+.||= .-.+..||+..+|+. .|||.+|.
T Consensus 46 r~~Il~AA~~l~~e~G~~-~~Tl~~IA~~aGvs~------~tlY~~F~ 86 (256)
T 3g1l_A 46 ELAILATAENLLEDRPLA-DISVDDLAKGAGISR------PTFYFYFP 86 (256)
T ss_dssp HHHHHHHHHHHTTTSCGG-GCCHHHHHHHHTCCH------HHHHHHCS
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 999999999999983945-176999999989099------99988828
No 171
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=26.08 E-value=31 Score=15.00 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699999999998266899999999985088799999999764432022
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 15 ~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs------~~tiY~~F~~K 55 (210)
T 2xdn_A 15 QIIEAAERAFYKRGV-ARTTLADIAELAGVT------RGAIYWHFNNK 55 (210)
T ss_dssp HHHHHHHHHHHHHCS-TTCCHHHHHHHHTCC------TTHHHHHCSSH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999997591-407799999997929------88998886999
No 172
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=25.95 E-value=34 Score=14.72 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCCC
Q ss_conf 9999999999826--689999999998508879999-99997644320222
Q gi|254780856|r 42 VIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRV-LEIATFYTQFQLSP 89 (218)
Q Consensus 42 lip~L~~vQ~~~G--~Ip~eai~~iA~~L~i~~~~V-~~VaTFY~~f~~~P 89 (218)
+|.+-+.+-.+.| .-=.+.+++|++.++++..++ .-++.||+.+.+-+
T Consensus 15 mid~Ay~iL~~~~~pm~F~dL~~eI~~~~~~s~~e~~~~iaq~YTdLn~Dg 65 (99)
T 2krc_A 15 LVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDG 65 (99)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999983997049999999999968887689999999999986058
No 173
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=25.66 E-value=17 Score=16.66 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 3699999999998266899999999985088799999
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+..+++.+=++.|+ | -.+..||+.++++.-++.
T Consensus 49 ~v~aAcvy~acR~~~~-p-rtl~eia~~~~~~~k~l~ 83 (207)
T 1c9b_A 49 AIASACLYIACRQEGV-P-RTFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHHHTTC-C-CCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHCCC-C-CCHHHHHHHHCCCHHHHH
T ss_conf 6999889999987289-8-759999999788799999
No 174
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=25.52 E-value=34 Score=14.67 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.|..||..--.+=.+.|| ..-.+..||+..|++. .|||.+|..|.
T Consensus 26 ~R~~IL~AA~~lf~e~G~-~~~T~~~IA~~aGvs~------~tlY~~F~sKe 70 (211)
T 3fiw_A 26 NRETVITEALDLLDEVGL-DGVSTRRLAKRLGVEQ------PSLYWYFRTKR 70 (211)
T ss_dssp CHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCT------HHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 999999999999997494-5375999999989288------58989889989
No 175
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=25.48 E-value=34 Score=14.67 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=23.0
Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 266899999999985088799999999764432
Q gi|254780856|r 53 EGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 (218)
Q Consensus 53 ~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f 85 (218)
+.|.+.+-...||..+||+..+|. .++..-
T Consensus 27 ~PYPs~~~~~~La~~~gL~~~qV~---~WF~N~ 56 (83)
T 1le8_B 27 NPYLDTKGLENLMKNTSLSRIQIK---NWVAAR 56 (83)
T ss_dssp SCCCCHHHHHHHHHHHCCCHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHH---HHHHHH
T ss_conf 899699999999999788999988---979998
No 176
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=25.35 E-value=34 Score=14.68 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999982668999999999850887999999997644320
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
..+.++-++.|| ..-.|..||+.+|++. .|+|.+|.
T Consensus 13 aA~~lf~~~~G~-~~~T~~~IA~~aGvs~------~~lY~hF~ 48 (220)
T 1z0x_A 13 AAFSLLEKSPTL-EQLSMRKVAKQLGVQA------PAIYWYFK 48 (220)
T ss_dssp HHHHHHHHSCCG-GGCCHHHHHHHHTSCH------HHHHTTCS
T ss_pred HHHHHHHHCCCC-CCCCHHHHHHHHCCCH------HHHHHHCC
T ss_conf 999999880895-3167999999969678------78999969
No 177
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=25.21 E-value=35 Score=14.64 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 86784321336999999999982668999999999850887999999997644320222
Q gi|254780856|r 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 31 ~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.+=|.+ .|..||..-..+=.+.||=- -.+..||+..|++. .|||.+|..+.
T Consensus 30 ~~~~~~-tR~~IL~AA~~l~~~~G~~~-~T~~~IA~~aGvs~------~tiY~yF~sKe 80 (221)
T 3g7r_A 30 ARTPSE-ARARLLGTATRIFYAEGIHS-VGIDRITAEAQVTR------ATLYRHFSGKD 80 (221)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHCSTT-SCHHHHHHHHTCCH------HHHHHHCSSHH
T ss_pred CCCHHH-HHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 688299-99999999999999829140-87999999989199------89998837699
No 178
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=25.17 E-value=35 Score=14.63 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=13.4
Q ss_pred ECCCHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 61883587708924899999882756
Q gi|254780856|r 98 VCGTTPCMLRGCEKLIEVCRNKIHQK 123 (218)
Q Consensus 98 VC~~~~C~l~G~~~l~~~l~~~Lgi~ 123 (218)
|.|+.--...+++.+++.+++++|++
T Consensus 91 vaTsA~R~A~N~~~~~~~i~~~tG~~ 116 (508)
T 3hi0_A 91 LATAAAREAENGPDFIREAEAILGCE 116 (508)
T ss_dssp EECTHHHHSTTHHHHHHHHHHHHTSC
T ss_pred EEEHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 91699885938999999999986997
No 179
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=25.00 E-value=35 Score=14.61 Aligned_cols=36 Identities=22% Similarity=0.054 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 699999999998266899999999985088799999
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
..+..|...-+..-|.+.+-...||+.|+|+...|-
T Consensus 97 ~q~~~Le~~f~~~~~p~~~~r~~lA~~~~l~~~~V~ 132 (146)
T 1au7_A 97 AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 899999999713599899999999999782989975
No 180
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.88 E-value=35 Score=14.59 Aligned_cols=23 Identities=4% Similarity=-0.026 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 66899999999985088799999
Q gi|254780856|r 54 GWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 54 G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.|.+.+..+.||..|||+...|.
T Consensus 25 ~yP~~~~r~~LA~~lgL~~~~V~ 47 (72)
T 1uhs_A 25 KHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99899999999999589888888
No 181
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=24.56 E-value=36 Score=14.56 Aligned_cols=38 Identities=11% Similarity=0.346 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999982668999999999850887999999997644320
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~ 86 (218)
||..-..+=.+.|| ..-.+..||+..|++. .|||.+|.
T Consensus 13 Il~aa~~l~~~~G~-~~~s~~~IA~~agvs~------~~~Y~~F~ 50 (194)
T 3dpj_A 13 IVAAADELFYRQGF-AQTSFVDISAAVGISR------GNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHHHCT-TTCCHHHHHHHHTCCH------HHHHHHCS
T ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHCCCC------CHHHHHCC
T ss_conf 99999999997492-5188999999868291------26888759
No 182
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=24.05 E-value=36 Score=14.49 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998266899999999985088799999999764432022
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|..--.+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 17 Il~aa~~lf~~~G~-~~~ti~~Ia~~agvs------~~~~Y~~F~sK 56 (211)
T 3bhq_A 17 IIQAATAAFISKGY-DGTSMEEIATKAGAS------KQTVYKHFTDK 56 (211)
T ss_dssp HHHHHHHHHHHHCS-TTCCHHHHHHHHTCC------HHHHHHHHCSH
T ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999998591-507799999985888------40587778999
No 183
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=23.92 E-value=37 Score=14.48 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCCCCCCEEEEECCCHHHHHHCCHHHHHH
Q ss_conf 3699999999998266899999999985088799999999764432----022278706999618835877089248999
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF----QLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f----~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~ 115 (218)
+-||.=+-.. .+..||+..-+..||..++++ ++..-+-||.-+ +.-|.. +-.+. -+-++++.+
T Consensus 6 ~~LM~dvlaL-~e~rWi~~~~I~~ia~~~~l~--~~e~~I~F~~El~~l~R~iP~~------~f~d~----e~R~klL~a 72 (92)
T 1xl3_C 6 SEFMGDIVAL-VDXRWAGIHDIEHLANAFSLP--TPEIXVRFYQDLXRMFRLFPLG------VFSDE----EQRQNLLQM 72 (92)
T ss_dssp HHHHHHHHHH-HHSTTCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHTSCGG------GSSCH----HHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCHH------HCCCH----HHHHHHHHH
T ss_conf 9999999988-750215799999999971786--4899999999999999978888------62898----899999999
Q ss_pred HHHHHC
Q ss_conf 998827
Q gi|254780856|r 116 CRNKIH 121 (218)
Q Consensus 116 l~~~Lg 121 (218)
+++.|.
T Consensus 73 ~Q~ALD 78 (92)
T 1xl3_C 73 CQNAID 78 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 184
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis V583} SCOP: c.47.1.13
Probab=23.75 E-value=28 Score=15.29 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=20.6
Q ss_pred CCEEEECCHHHC-CCCHHHHHHHHH
Q ss_conf 867998583414-588989999999
Q gi|254780856|r 147 APMVMIGKDTYE-DLTPERLEEIID 170 (218)
Q Consensus 147 AP~~~Vn~~~y~-~lt~e~~~~il~ 170 (218)
-|.+.||++++. ..+++.+.++|+
T Consensus 150 TPt~~Ing~~~~g~~~~~~l~~~i~ 174 (175)
T 1z6m_A 150 VPTIIIGEYIFDESVTEEELRGYIE 174 (175)
T ss_dssp SCEEEETTEEECTTCCHHHHHHHHT
T ss_pred CCEEEECCEECCCCCCHHHHHHHHC
T ss_conf 8989899998249899999999974
No 185
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=22.96 E-value=36 Score=14.56 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999998678432133699999999998266899999999985088799999999
Q gi|254780856|r 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 (218)
Q Consensus 20 ~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~Va 79 (218)
-|+...+...+.+-|+.. | -+-.|.. +-.-...+||+.|++|+..|..-.
T Consensus 3 ~E~~~~l~~~l~~Lp~~~-r--~v~~l~~-------~~g~s~~EIA~~lgis~~tvk~~l 52 (70)
T 2o8x_A 3 FEDLVEVTTMIADLTTDQ-R--EALLLTQ-------LLGLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp HHHHHHHHTTTTSSCHHH-H--HHHHHHH-------TSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHH-H--HHHHHHH-------HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 789999999998699999-9--9999899-------909999999999897999999999
No 186
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=22.86 E-value=38 Score=14.34 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=20.1
Q ss_pred CCCEEEECCHHHCC-C----C----HHHHHHHHHHHHCCCC
Q ss_conf 88679985834145-8----8----9899999999982889
Q gi|254780856|r 146 NAPMVMIGKDTYED-L----T----PERLEEIIDAFSTGQG 177 (218)
Q Consensus 146 ~AP~~~Vn~~~y~~-l----t----~e~~~~il~~Lr~gk~ 177 (218)
--|++.||+++.-. . + .+-+++||++-|+|.-
T Consensus 151 gTPtfiVnGky~~~~~~~~~~~~~~~~~id~ll~k~~~~~~ 191 (195)
T 3hd5_A 151 GTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSREGHH 191 (195)
T ss_dssp SSSEEEETTTEEECTTTTTGGGTTHHHHHHHHHHHHHC---
T ss_pred CCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 34789999999637556764799999999999999967887
No 187
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=22.56 E-value=39 Score=14.30 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCC
Q ss_conf 82668999999999850887999999997644320222787069996188358770892489999988275647
Q gi|254780856|r 52 QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 (218)
Q Consensus 52 ~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~g 125 (218)
..|.|++++++.+.+.|. .|-..+....+ ++..-|.|+.--...+++.+++.+++++|++..
T Consensus 46 ~~g~is~~~i~~~~~~L~----------~f~~~~~~~~v--~~~~~vaTsA~R~A~N~~~~~~~i~~~tGi~i~ 107 (315)
T 3mdq_A 46 TKGFITEEAMDRALDTLK----------KFRVILDEHAV--VHVIATGTSAVRSGSNKQVLIDRIKKEVNIDVE 107 (315)
T ss_dssp GGTCCCHHHHHHHHHHHH----------HHHHHHHHTTC--CEEEEEECHHHHHCTTHHHHHHHHHHHHCCCEE
T ss_pred CCCCCCHHHHHHHHHHHH----------HHHHHHHHCCC--CEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCEE
T ss_conf 149949999999999999----------99998764377--469875659999664738899999998599879
No 188
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized peroxidase-related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha JMP134} SCOP: a.152.1.3
Probab=22.12 E-value=40 Score=14.24 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHCCCCHH
Q ss_conf 6999999999982668999
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRA 59 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~e 59 (218)
.+-+++..+++..|++|.-
T Consensus 23 ~~~~~~~~~~~~~G~~pN~ 41 (197)
T 2prr_A 23 DIRQRILEVQDKAGFVPNV 41 (197)
T ss_dssp HHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999884998299
No 189
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=21.75 E-value=40 Score=14.20 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..+|..-..+=.+.|| ..-.+..||+..|++. .|||.+|..|
T Consensus 10 e~Il~aA~~lf~~~G~-~~~ti~~IA~~agvs~------~tiY~~F~sK 51 (186)
T 2jj7_A 10 ENILKAAKKKFGERGY-EGTSIQEIAKEAKVNV------AMASYYFNGK 51 (186)
T ss_dssp HHHHHHHHHHHHHHHH-HHCCHHHHHHHHTSCH------HHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999998591-4177999999869698------8997787897
No 190
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.71 E-value=40 Score=14.19 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=20.8
Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 266899999999985088799999
Q gi|254780856|r 53 EGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 53 ~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+-|.+.+-...||+.++|+..+|.
T Consensus 32 nPYPs~~ek~~La~~~gl~~~qV~ 55 (73)
T 1x2n_A 32 HPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp SCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 799699999999999881999989
No 191
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=21.69 E-value=40 Score=14.19 Aligned_cols=21 Identities=0% Similarity=-0.073 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999985088799999999
Q gi|254780856|r 59 AAIEVVANILDMAYIRVLEIA 79 (218)
Q Consensus 59 eai~~iA~~L~i~~~~V~~Va 79 (218)
..++.||+.++++...|+.+.
T Consensus 52 PS~~~La~~~g~s~~~v~~~l 72 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRL 72 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
T ss_conf 899999989594999999999
No 192
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=21.64 E-value=31 Score=14.94 Aligned_cols=62 Identities=16% Similarity=0.368 Sum_probs=36.7
Q ss_pred EEECCCHHHHHHCCHHHHHHHHH---HHCCCCCCCCCCCCEEEEEECCCC-----CCCCCCEEEECCHHH--CCC-CHHH
Q ss_conf 99618835877089248999998---827564751778818999532456-----677886799858341--458-8989
Q gi|254780856|r 96 VQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQG-----ACVNAPMVMIGKDTY--EDL-TPER 164 (218)
Q Consensus 96 I~VC~~~~C~l~G~~~l~~~l~~---~Lgi~~gett~DG~ftLe~v~CLG-----~C~~AP~~~Vn~~~y--~~l-t~e~ 164 (218)
|+|= ++.|. .+..+.+.+++ ++|+. .+++.+.-+. --..-|++.||+++. |++ +.+.
T Consensus 4 I~Vl-g~gC~--~C~~~~~~v~~a~~e~gi~---------a~v~kv~D~~ei~~~gVm~tPalvIdg~vv~~G~vPs~~e 71 (77)
T 1ilo_A 4 IQIY-GTGCA--NCQMLEKNAREAVKELGID---------AEFEKIKEMDQILEAGLTALPGLAVDGELKIMGRVASKEE 71 (77)
T ss_dssp EEEE-CSSSS--TTHHHHHHHHHHHHHTTCC---------EEEEEECSHHHHHHHTCSSSSCEEETTEEEECSSCCCHHH
T ss_pred EEEE-CCCCC--CHHHHHHHHHHHHHHCCCC---------EEEEEECCHHHHHHCCCCCCCEEEECCEEEEEECCCCHHH
T ss_conf 9997-69997--5699999999999965995---------5999957999999749756887999999999735899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780856|r 165 LEEII 169 (218)
Q Consensus 165 ~~~il 169 (218)
+.++|
T Consensus 72 i~~~L 76 (77)
T 1ilo_A 72 IKKIL 76 (77)
T ss_dssp HHHHC
T ss_pred HHHHH
T ss_conf 99974
No 193
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.49 E-value=41 Score=14.16 Aligned_cols=43 Identities=7% Similarity=0.168 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 10 r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~------~t~Y~~F~sK 52 (194)
T 2g7s_A 10 ADDILQCARTLIIRGGY-NSFSYADISQVVGIRN------ASIHHHFPSK 52 (194)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHCCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHCCCCCH
T ss_conf 99999999999997495-7477999999878292------1331158999
No 194
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=21.16 E-value=41 Score=14.12 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-...-|.+.+-...||+.|+|+...|
T Consensus 113 ~~~Le~~f~~~~~p~~~~~~~lA~~l~l~~~~v 145 (160)
T 1e3o_C 113 RVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 145 (160)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998189879999999999969498997
No 195
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=21.04 E-value=28 Score=15.31 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=11.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999998508879999999976443202
Q gi|254780856|r 59 AAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 59 eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
-.+..||+..|++ ..|||.+|..
T Consensus 33 ~S~~~IA~~aGvs------~~tlY~yF~s 55 (220)
T 3lsj_A 33 LSLREVTRAAGIV------PAGFYRHFSD 55 (220)
T ss_dssp CCHHHHHHHHTSC------GGGGTTTCSS
T ss_pred HHHHHHHHHHCCC------HHHHHHHCCC
T ss_conf 1199999998929------7888886799
No 196
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=21.04 E-value=35 Score=14.59 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHH-HHHCCCCHHHHH
Q ss_conf 58999999999998678432133699---9999999-982668999999
Q gi|254780856|r 18 FSEESAIWVNEVISRYPPSRCQSAVI---PLLMRAQ-EQEGWVSRAAIE 62 (218)
Q Consensus 18 fs~e~~~~i~~ii~~yP~~~~~sali---p~L~~vQ-~~~G~Ip~eai~ 62 (218)
.+++..++|.+.++.|-.+ +.|. -++..++ +..||||-..+-
T Consensus 6 ~~~~~~~~I~~QvEfYFSd---~NL~~D~fLr~~~~~~~~g~Vpl~~i~ 51 (92)
T 1s29_A 6 LSSENKQKLQKQVEFYFSD---VNVQRDIFLKGKMAENAEGFVSLETLL 51 (92)
T ss_dssp CCHHHHHHHHHHHHHHTSH---HHHTTCHHHHHHHTTSTTCCEEHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCH---HHHCCCHHHHHHHHCCCCCCEEHHHHH
T ss_conf 8889999999999997367---441328999999836689869659986
No 197
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=20.57 E-value=43 Score=14.04 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999850887999999997
Q gi|254780856|r 57 SRAAIEVVANILDMAYIRVLEIAT 80 (218)
Q Consensus 57 p~eai~~iA~~L~i~~~~V~~VaT 80 (218)
|+++.+.+++.++++...+...+.
T Consensus 220 p~ea~~~~a~~~~~~~~~~~~~~~ 243 (308)
T 2x26_A 220 REQSIALLAKTMGLPAPVIASYLD 243 (308)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999998909999999986
No 198
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.42 E-value=43 Score=14.01 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+|.+||..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|.
T Consensus 24 ~R~~IL~AA~~lf~~~G~-~~~T~~~IA~~aGvs------~~tlY~~F~sKe 68 (231)
T 2zcx_A 24 REEAILDAARELGTERGI-REITLTDIAATVGMH------KSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTSC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999997492-406799999997919------889978759999
No 199
>2o4d_A Hypothetical protein PA0269; unknown function; 1.85A {Pseudomonas aeruginosa} SCOP: a.152.1.3 PDB: 2ijc_A
Probab=20.32 E-value=41 Score=14.14 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=7.9
Q ss_pred HHHHHCCCHHHHHHHHHH
Q ss_conf 998508879999999976
Q gi|254780856|r 64 VANILDMAYIRVLEIATF 81 (218)
Q Consensus 64 iA~~L~i~~~~V~~VaTF 81 (218)
+|..+|++..+|..+..+
T Consensus 78 ~a~~~G~s~e~i~al~~~ 95 (165)
T 2o4d_A 78 DARKAGETEQRLQALCVW 95 (165)
T ss_dssp HHHHTTCCHHHHHHGGGG
T ss_pred HHHHHCCCHHHHHHHHCC
T ss_conf 999855611688887226
No 200
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=20.32 E-value=36 Score=14.54 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999999826689999999998508879999999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V 78 (218)
-.-+.+.+.+...-++...+..||+..+++.+-|.-.
T Consensus 19 e~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf 55 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRL 55 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999995999997765999998979899899999
No 201
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=20.23 E-value=43 Score=13.99 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..|
T Consensus 18 Re~Il~aA~~lf~~~G~-~~~si~~Ia~~agvs------~~tiy~yF~sK 60 (213)
T 2qtq_A 18 RDLLLQTASNIMREGDV-VDISLSELSLRSGLN------SALVKYYFGNK 60 (213)
T ss_dssp HHHHHHHHHHHHHHHTS-SCCCHHHHHHHHCCC------HHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 99999999999997393-417899999997949------99999987989
Done!