HHSEARCH alignment of GI: 254780856 and SCOP domain: d2fug21

Alignment
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=377.68  Aligned_cols=174  Identities=31%  Similarity=0.635  Sum_probs=161.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             58999999999998678432133699999999998266899999999985088799999999764432022278706999
Q gi|254780856|r   18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ   97 (218)
Q Consensus        18 fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~   97 (218)
                      |+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|+||+++||+|+|||+||+++|+| ||+|+
T Consensus         1 f~~~~~~~i~~ii~~Yp~~~~~~ali~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~i~   79 (178)
T d2fug21           1 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYHLQ   79 (178)
T ss_dssp             CTTTTHHHHHHHHHTSCSSCGGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSCSSCCC-SEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCC-CCEEE
T ss_conf             98789999999998788854643899999999998698788999999999797989999999855311035665-40247


Q ss_pred             ECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHCCC
Q ss_conf             618835877089248999998827564751778818999532456677886799858341-4588989999999998288
Q gi|254780856|r   98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ  176 (218)
Q Consensus        98 VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~gk  176 (218)
                      ||++++|+++|+.+|+++++++|||+.|+||+||+|||++++|||+|+.||+|+||++.| ++||++++++||+.||+|+
T Consensus        80 VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~~y~~~lt~e~~~~il~~lr~~~  159 (178)
T d2fug21          80 VCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK  159 (178)
T ss_dssp             EECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSSSBCCSCCHHHHHHHHHHHHTTC
T ss_pred             ECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             54715644402033689987631223011169987888975225716889969994977467799999999999998699


Q ss_pred             CC--CCCCCCCCCCCCCCC
Q ss_conf             99--987488478643367
Q gi|254780856|r  177 GD--TIRPGPQIDRISSAP  193 (218)
Q Consensus       177 ~~--~~k~g~~~~r~~~~~  193 (218)
                      ..  .+.|| +.+|..+++
T Consensus       160 ~~~~~~~~~-~~~~~~~~~  177 (178)
T d2fug21         160 RLEEIELPG-KCGHHVHEV  177 (178)
T ss_dssp             CGGGCCCSS-CCCSSBCCC
T ss_pred             CCCCCCCCC-CCCCCCCCC
T ss_conf             998788889-889763147


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]