Query gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 218
No_of_seqs 125 out of 1281
Neff 5.3
Searched_HMMs 13730
Date Wed Jun 1 10:14:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780856.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fug21 c.47.1.21 (2:3-180) NA 100.0 0 0 377.7 18.7 174 18-193 1-177 (178)
2 d1m2da_ c.47.1.11 (A:) Thiored 99.3 6E-13 4.4E-17 105.5 3.8 81 93-177 2-93 (101)
3 d2csba5 a.267.1.1 (A:3-293) To 68.1 1.7 0.00013 21.8 2.8 91 20-120 162-259 (291)
4 d1t33a1 a.4.1.9 (A:1-88) Putat 65.9 2.1 0.00015 21.2 2.8 42 39-88 14-55 (88)
5 d2craa1 a.4.1.1 (A:7-64) Homeo 61.7 5.3 0.00039 18.5 4.9 34 43-76 13-46 (58)
6 d2hkua1 a.4.1.9 (A:18-87) Puta 61.0 4.2 0.0003 19.2 3.6 42 39-89 3-45 (70)
7 d2e1oa1 a.4.1.1 (A:8-64) Homeo 60.9 5.5 0.0004 18.4 4.9 34 43-76 12-45 (57)
8 d1vnda_ a.4.1.1 (A:) VND/NK-2 54.6 6.9 0.0005 17.7 4.8 34 42-75 20-53 (77)
9 d2o7ta1 a.4.1.9 (A:1-78) Trans 53.8 3.8 0.00028 19.5 2.4 45 38-89 8-52 (78)
10 d2g3ba1 a.4.1.9 (A:2-73) Putat 53.8 3 0.00022 20.1 1.9 44 39-89 4-47 (72)
11 d2ecca1 a.4.1.1 (A:1-76) Homeo 53.6 7.2 0.00052 17.6 5.0 34 43-76 15-48 (76)
12 d1ui5a1 a.4.1.9 (A:5-75) A-fac 53.4 5.5 0.0004 18.4 3.2 45 38-89 6-50 (71)
13 d2gfna1 a.4.1.9 (A:4-80) Proba 52.6 5.2 0.00038 18.6 3.0 45 38-89 7-51 (77)
14 d1jgga_ a.4.1.1 (A:) Even-skip 52.3 7.5 0.00055 17.5 4.8 34 43-76 11-44 (57)
15 d2fq4a1 a.4.1.9 (A:9-77) Trans 52.2 5.2 0.00038 18.5 2.9 44 38-88 5-48 (69)
16 d2oi8a1 a.4.1.9 (A:8-86) Putat 51.4 5.6 0.0004 18.4 2.9 44 38-88 10-53 (79)
17 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 50.9 7.9 0.00058 17.3 4.9 34 43-76 12-45 (58)
18 d1rkta1 a.4.1.9 (A:2-82) Hypot 50.7 6 0.00043 18.2 3.0 43 39-88 13-55 (81)
19 d1le8a_ a.4.1.1 (A:) Mating ty 50.3 8.1 0.00059 17.3 4.9 34 43-76 9-42 (53)
20 d2id3a1 a.4.1.9 (A:13-80) Puta 49.8 5.3 0.00039 18.5 2.7 44 38-88 7-50 (68)
21 d1bw5a_ a.4.1.1 (A:) Insulin g 49.7 8.2 0.0006 17.2 5.0 34 43-76 15-48 (66)
22 d1pb6a1 a.4.1.9 (A:14-85) Hypo 49.7 6.7 0.00049 17.8 3.2 43 39-88 6-48 (72)
23 d1fjla_ a.4.1.1 (A:) Paired pr 49.4 8.3 0.00061 17.2 4.8 34 43-76 14-47 (65)
24 d2fbqa1 a.4.1.9 (A:2-80) Trans 49.0 7.6 0.00055 17.5 3.3 42 40-88 7-48 (79)
25 d3c07a1 a.4.1.9 (A:15-89) Puta 48.1 6.3 0.00046 18.0 2.8 43 39-88 7-49 (75)
26 d2iu5a1 a.4.1.9 (A:1-71) Trans 47.2 4.3 0.00032 19.1 1.9 43 39-88 8-50 (71)
27 d1p7ia_ a.4.1.1 (A:) Engrailed 47.0 9.1 0.00066 17.0 4.8 34 43-76 11-44 (53)
28 d2dt5a1 a.4.5.38 (A:4-77) Tran 46.9 9.1 0.00066 16.9 4.3 60 45-122 14-74 (74)
29 d2gena1 a.4.1.9 (A:6-75) Proba 46.6 8.8 0.00064 17.0 3.3 44 39-89 2-45 (70)
30 d1t56a1 a.4.1.9 (A:22-94) Ethr 46.3 5.5 0.0004 18.4 2.3 45 38-89 4-48 (73)
31 d1zq3p1 a.4.1.1 (P:2-68) Homeo 46.0 9.4 0.00068 16.9 4.0 34 43-76 13-46 (67)
32 d1jt6a1 a.4.1.9 (A:2-72) Multi 45.6 9.3 0.00068 16.9 3.4 43 39-88 3-45 (71)
33 d9anta_ a.4.1.1 (A:) Antennape 45.3 9.6 0.0007 16.8 4.0 34 43-76 9-42 (56)
34 d2fd5a1 a.4.1.9 (A:1-76) Proba 45.2 5 0.00036 18.7 1.9 44 38-88 8-51 (76)
35 d2ecba1 a.4.1.1 (A:8-83) Zinc 45.0 9.7 0.00071 16.7 4.9 34 43-76 16-49 (76)
36 d2g7sa1 a.4.1.9 (A:3-76) Putat 44.1 5.9 0.00043 18.2 2.2 45 38-89 5-49 (74)
37 d1ftta_ a.4.1.1 (A:) Thyroid t 43.5 10 0.00075 16.6 4.9 33 43-75 14-46 (68)
38 d2d6ya1 a.4.1.9 (A:7-74) Putat 42.8 9.8 0.00071 16.7 3.1 44 39-89 4-47 (68)
39 d1zk8a1 a.4.1.9 (A:6-77) Trans 42.3 8.2 0.0006 17.2 2.6 42 40-88 6-47 (72)
40 d1k61a_ a.4.1.1 (A:) mat alpha 40.1 12 0.00084 16.3 3.6 23 53-75 23-45 (60)
41 d1b72a_ a.4.1.1 (A:) Homeobox 39.9 12 0.00084 16.2 4.0 35 42-76 38-72 (88)
42 d1v7ba1 a.4.1.9 (A:1-74) Trans 39.8 12 0.00085 16.2 3.1 44 38-88 5-48 (74)
43 d1sgma1 a.4.1.9 (A:5-77) Putat 39.6 6.5 0.00047 17.9 1.8 42 39-87 4-45 (73)
44 d2g7ga1 a.4.1.9 (A:9-73) Putat 38.1 12 0.0009 16.1 4.7 39 41-88 5-43 (65)
45 d2g7la1 a.4.1.9 (A:16-83) Puta 38.0 12 0.00086 16.2 2.9 43 39-88 6-48 (68)
46 d1vi0a1 a.4.1.9 (A:6-77) Hypot 37.6 11 0.00082 16.3 2.7 43 40-89 4-46 (72)
47 d2id6a1 a.4.1.9 (A:1-75) Trans 37.2 6.6 0.00048 17.9 1.5 43 39-88 5-47 (75)
48 d1r7ha_ c.47.1.1 (A:) Glutared 37.1 9.9 0.00072 16.7 2.4 51 118-169 22-73 (74)
49 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 36.7 13 0.00094 15.9 3.7 34 43-76 20-53 (67)
50 d1z6ma1 c.47.1.13 (A:1-172) Hy 36.4 7.1 0.00052 17.7 1.6 25 147-171 147-172 (172)
51 d1wjka_ c.47.1.1 (A:) Thioredo 36.0 7.7 0.00056 17.4 1.7 29 146-174 66-96 (100)
52 d1z0xa1 a.4.1.9 (A:4-71) Trans 35.8 12 0.0009 16.1 2.7 43 40-89 5-48 (68)
53 d1sfxa_ a.4.5.50 (A:) Hypothet 35.7 13 0.00098 15.8 4.2 51 24-81 7-57 (109)
54 d2cuea1 a.4.1.1 (A:7-74) Paire 35.4 14 0.00099 15.8 4.0 33 44-76 14-46 (68)
55 d2np5a1 a.4.1.9 (A:9-77) Trans 34.9 14 0.001 15.7 2.9 42 40-88 4-45 (69)
56 d1pufa_ a.4.1.1 (A:) Homeobox 34.6 14 0.001 15.7 4.8 33 43-75 25-57 (77)
57 d1au7a1 a.4.1.1 (A:103-160) Pi 34.4 14 0.001 15.7 5.0 35 42-76 10-44 (58)
58 d1s7ea1 a.4.1.1 (A:103-152) He 33.6 11 0.00082 16.3 2.2 32 45-76 12-43 (50)
59 d2fx0a1 a.4.1.9 (A:4-76) Hemol 33.5 15 0.0011 15.6 2.9 43 39-88 6-48 (73)
60 d2nxoa1 c.94.1.1 (A:5-281) Hyp 33.3 15 0.0011 15.6 4.4 42 41-82 200-241 (277)
61 d2cqxa1 a.4.1.1 (A:8-66) LAG1 32.6 15 0.0011 15.5 4.5 33 44-76 14-47 (59)
62 d1yz8p1 a.4.1.1 (P:1-60) Pitui 30.4 9.7 0.00071 16.8 1.5 33 43-75 13-45 (60)
63 d1j5ya1 a.4.5.1 (A:3-67) Putat 30.1 16 0.0012 15.2 4.2 39 40-81 7-45 (65)
64 d2i10a1 a.4.1.9 (A:10-78) Puta 29.1 15 0.0011 15.4 2.3 36 45-88 9-44 (69)
65 d1iloa_ c.47.1.1 (A:) MTH985, 28.6 11 0.00081 16.4 1.5 62 96-169 4-76 (77)
66 d1biaa1 a.4.5.1 (A:1-63) Bioti 28.2 18 0.0013 15.0 3.6 37 41-81 6-42 (63)
67 d1rp3a2 a.4.13.2 (A:164-234) S 27.7 18 0.0013 14.9 4.0 51 19-79 8-58 (71)
68 d2hyja1 a.4.1.9 (A:8-82) Putat 27.0 16 0.0012 15.3 2.1 43 39-88 7-49 (75)
69 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 27.0 19 0.0014 14.8 2.9 46 17-85 3-48 (59)
70 d1h75a_ c.47.1.1 (A:) Glutared 26.9 9.8 0.00072 16.7 1.0 56 111-168 16-72 (76)
71 d2cyya1 a.4.5.32 (A:5-64) Puta 26.6 18 0.0013 14.9 2.3 32 44-79 7-38 (60)
72 d1e3oc1 a.4.1.1 (C:104-160) Oc 26.5 19 0.0014 14.8 5.2 34 43-76 10-43 (57)
73 d1eeja1 c.47.1.9 (A:61-216) Di 26.2 19 0.0014 14.8 2.7 29 147-175 122-152 (156)
74 d2cg4a1 a.4.5.32 (A:4-66) Regu 25.8 17 0.0012 15.1 2.0 30 45-78 10-39 (63)
75 d2ev0a1 a.4.5.24 (A:2-62) Mang 23.4 22 0.0016 14.4 5.1 35 43-80 9-43 (61)
76 d1xl3c1 a.243.1.1 (C:2-92) Tye 22.9 22 0.0016 14.4 3.2 70 40-122 5-78 (91)
77 d1uhsa_ a.4.1.1 (A:) Homeodoma 22.8 22 0.0016 14.3 4.5 23 54-76 25-47 (72)
78 d2vkva1 a.4.1.9 (A:6-67) Tetra 22.7 22 0.0016 14.3 2.3 40 42-88 4-43 (62)
79 d2prra1 a.152.1.3 (A:5-194) Un 21.6 23 0.0017 14.2 5.0 16 42-57 19-34 (190)
80 d1i1ga1 a.4.5.32 (A:2-61) LprA 21.5 22 0.0016 14.3 2.0 31 44-78 7-37 (60)
81 d2pfxa1 a.152.1.3 (A:1-190) Un 21.5 24 0.0017 14.2 5.7 38 41-83 21-58 (190)
82 d1x2ma1 a.4.1.1 (A:8-59) Lag1 21.0 24 0.0018 14.1 4.8 34 43-76 5-39 (52)
No 1
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=377.68 Aligned_cols=174 Identities=31% Similarity=0.635 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 58999999999998678432133699999999998266899999999985088799999999764432022278706999
Q gi|254780856|r 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 (218)
Q Consensus 18 fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~ 97 (218)
|+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|+||+++||+|+|||+||+++|+| ||+|+
T Consensus 1 f~~~~~~~i~~ii~~Yp~~~~~~ali~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~i~ 79 (178)
T d2fug21 1 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYHLQ 79 (178)
T ss_dssp CTTTTHHHHHHHHHTSCSSCGGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSCSSCCC-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCC-CCEEE
T ss_conf 98789999999998788854643899999999998698788999999999797989999999855311035665-40247
Q ss_pred ECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHCCC
Q ss_conf 618835877089248999998827564751778818999532456677886799858341-4588989999999998288
Q gi|254780856|r 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 (218)
Q Consensus 98 VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~gk 176 (218)
||++++|+++|+.+|+++++++|||+.|+||+||+|||++++|||+|+.||+|+||++.| ++||++++++||+.||+|+
T Consensus 80 VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~~y~~~lt~e~~~~il~~lr~~~ 159 (178)
T d2fug21 80 VCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 159 (178)
T ss_dssp EECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSSSBCCSCCHHHHHHHHHHHHTTC
T ss_pred ECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 54715644402033689987631223011169987888975225716889969994977467799999999999998699
Q ss_pred CC--CCCCCCCCCCCCCCC
Q ss_conf 99--987488478643367
Q gi|254780856|r 177 GD--TIRPGPQIDRISSAP 193 (218)
Q Consensus 177 ~~--~~k~g~~~~r~~~~~ 193 (218)
.. .+.|| +.+|..+++
T Consensus 160 ~~~~~~~~~-~~~~~~~~~ 177 (178)
T d2fug21 160 RLEEIELPG-KCGHHVHEV 177 (178)
T ss_dssp CGGGCCCSS-CCCSSBCCC
T ss_pred CCCCCCCCC-CCCCCCCCC
T ss_conf 998788889-889763147
No 2
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=99.30 E-value=6e-13 Score=105.50 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=71.8
Q ss_pred CEEEEECCCH--------HHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE--CCHHHCCCCH
Q ss_conf 0699961883--------58770892489999988275647517788189995324566778867998--5834145889
Q gi|254780856|r 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTP 162 (218)
Q Consensus 93 k~~I~VC~~~--------~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~V--n~~~y~~lt~ 162 (218)
|| |-||++. +|..+|+++++++++++|....+. |+.+++..+.|+|.|..||+|.| ++.+|+++|+
T Consensus 2 rH-i~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~---~~~v~v~~tgClG~C~~gP~v~i~P~~~~Y~~v~~ 77 (101)
T d1m2da_ 2 KH-VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQL---FMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKP 77 (101)
T ss_dssp EE-EEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHH---HTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCG
T ss_pred CE-EEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCCCCCCEEEECCCCCEEECCCH
T ss_conf 98-999499998988898632309899999999986453389---87289997257865578860898178327816999
Q ss_pred HHHHHHHHH-HHCCCC
Q ss_conf 899999999-982889
Q gi|254780856|r 163 ERLEEIIDA-FSTGQG 177 (218)
Q Consensus 163 e~~~~il~~-Lr~gk~ 177 (218)
+++++||++ |.+|++
T Consensus 78 e~v~~Iv~~hl~~g~~ 93 (101)
T d1m2da_ 78 EDVDEIVEKHLKGGEP 93 (101)
T ss_dssp GGHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999988938
No 3
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=68.06 E-value=1.7 Score=21.75 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCCCCCCC
Q ss_conf 99999999999867--843213369999999999826689999999998508879999999-----97644320222787
Q gi|254780856|r 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI-----ATFYTQFQLSPVGT 92 (218)
Q Consensus 20 ~e~~~~i~~ii~~y--P~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V-----aTFY~~f~~~P~G~ 92 (218)
++.....+.+|.+| |-+.+...++.+|. +.-|-|.+ +||..||++.++|.|- -..|+.+++.-+.-
T Consensus 162 pemageferlierydvpidekeerileilr----enpwtphd---eiarrlglsvsevegekdpessgiyslwsrvvvni 234 (291)
T d2csba5 162 PEMAGEFERLIERYDVPIDEKEERILEILR----ENPWTPHD---EIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNI 234 (291)
T ss_dssp GGGTTTTHHHHHHTTCCCCHHHHHHHHHHH----HCTTCCHH---HHHHHHTCCHHHHHCCSSSSSCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCCCHH---HHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHEEEE
T ss_conf 555017999999707997647899999997----08999728---99998487532313777942011888655515854
Q ss_pred CEEEEECCCHHHHHHCCHHHHHHHHHHH
Q ss_conf 0699961883587708924899999882
Q gi|254780856|r 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 (218)
Q Consensus 93 k~~I~VC~~~~C~l~G~~~l~~~l~~~L 120 (218)
.| --++.--|++--+.+++.|-++|
T Consensus 235 ey---dertakrhvkrrdrlleelyehl 259 (291)
T d2csba5 235 EY---DERTAKRHVKRRDRLLEELYEHL 259 (291)
T ss_dssp CC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32---25778888878888999999999
No 4
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=65.86 E-value=2.1 Score=21.19 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|..-..+=.+.||= . .+..||+..|++ ..|||.+|..+
T Consensus 14 r~~Il~aa~~l~~~~G~~-~-t~~~Ia~~agvs------~~~~Y~~F~sK 55 (88)
T d1t33a1 14 KSQLIAAALAQFGEYGLH-A-TTRDIAALAGQN------IAAITYYFGSK 55 (88)
T ss_dssp HHHHHHHHHHHHHHHGGG-S-CHHHHHHHHTSC------HHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHCCC-C-CHHHHHHHHCCC------HHHHHCCCCCH
T ss_conf 999999999999875401-6-799999883998------44310019899
No 5
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.71 E-value=5.3 Score=18.51 Aligned_cols=34 Identities=6% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+..+.||+.|+|++..|.
T Consensus 13 ~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 46 (58)
T d2craa1 13 LRELEREYAANKFITKDKRRKISAATSLSERQIT 46 (58)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEE
T ss_conf 9999999966699998999999998299977811
No 6
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=61.04 E-value=4.2 Score=19.20 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=28.8
Q ss_pred HHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999-999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIP-LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip-~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|.+||. ...++ .+.|| . -.+..||+..|++ ..|||.+|..+.
T Consensus 3 r~~Il~aA~~l~-~~~G~-~-~t~~~Ia~~agvs------~~~~Y~~F~~K~ 45 (70)
T d2hkua1 3 RDALFTAATELF-LEHGE-G-VPITQICAAAGAH------PNQVTYYYGSKE 45 (70)
T ss_dssp HHHHHHHHHHHH-HHHCT-T-SCHHHHHHHHTCC------HHHHHHHHSSHH
T ss_pred HHHHHHHHHHHH-HHCCC-C-CHHHHHHHHHCCC------HHHHHHCCCCHH
T ss_conf 999999999998-76135-7-4499999887888------536873089999
No 7
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.88 E-value=5.5 Score=18.42 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+-...||..|+|++..|.
T Consensus 12 ~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~ 45 (57)
T d2e1oa1 12 TIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45 (57)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999985799999999999999589877834
No 8
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=54.62 E-value=6.9 Score=17.73 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999999826689999999998508879999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
-+.+|..+-+..-|.+.+-..+||..|+|+...|
T Consensus 20 Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV 53 (77)
T d1vnda_ 20 QTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53 (77)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999878899999999999709975661
No 9
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=53.77 E-value=3.8 Score=19.46 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
++..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 8 ~r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~y~~F~sKe 52 (78)
T d2o7ta1 8 RREHIITTTCNLYRTHHH-DSLTMENIAEQAGVG------VATLYRNFPDRF 52 (78)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999998491-406799999883998------879999886999
No 10
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=53.76 E-value=3 Score=20.13 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..+|.....+=.+.| +..-.+..||+..+++ ..|||++|..+.
T Consensus 4 r~~Il~aa~~l~~~~G-~~~~ti~~Ia~~agvs------~~~ly~~F~~K~ 47 (72)
T d2g3ba1 4 RDAILKASATAIAQRG-IRGLRVNDVAEVAGVS------PGLLYYHFKDRI 47 (72)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCHHHHHHHHTSC------HHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 9999999999999839-2407799999885969------779998883999
No 11
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.63 E-value=7.2 Score=17.63 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+.+..||..++|+..+|.
T Consensus 15 ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~ 48 (76)
T d2ecca1 15 LAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998678999999999999805799999
No 12
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.35 E-value=5.5 Score=18.42 Aligned_cols=45 Identities=9% Similarity=0.211 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.+..++..-..+=.+.| +..-.+..||+..|++ ..|||.+|..+.
T Consensus 6 ~r~~il~aa~~l~~~~G-~~~~si~~Ia~~agvs------~~~~y~~F~sK~ 50 (71)
T d1ui5a1 6 TRATIIGAAADLFDRRG-YESTTLSEIVAHAGVT------KGALYFHFAAKE 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 99999999999999859-4626799999987948------769998982999
No 13
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=52.57 E-value=5.2 Score=18.57 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+|..+|.....+=.+.|| ..-.+..||+.+|++ ..|||.+|..+-
T Consensus 7 ~r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs------~~~lY~~F~~K~ 51 (77)
T d2gfna1 7 RRRALADAVLALIAREGI-SAVTTRAVAEESGWS------TGVLNHYFGSRH 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHSSC------HHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999998590-405799999987888------779988883999
No 14
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=52.29 E-value=7.5 Score=17.49 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+...|.+.+....||..|||+...|.
T Consensus 11 l~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~ 44 (57)
T d1jgga_ 11 LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44 (57)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999987799999999999999599866801
No 15
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=52.16 E-value=5.2 Score=18.55 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+.+++.....+=.+.| +..-.+..||+..|++. .+||++|.-+
T Consensus 5 ~r~~Il~aa~~l~~~~G-~~~~t~~~Ia~~agvs~------~~~y~~F~~k 48 (69)
T d2fq4a1 5 TQKAILSASYELLLESG-FKAVTVDKIAERAKVSK------ATIYKWWPNK 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999999839-24077999999978588------7999998799
No 16
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=51.41 E-value=5.6 Score=18.38 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+..||.....+=.+.|| ..-.|..||+..+++ ..|||.+|.-+
T Consensus 10 ~r~~il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~~~Y~~F~~k 53 (79)
T d2oi8a1 10 VRAEIKDHAWEQIATAGA-SALSLNAIAKRMGMS------GPALYRYFDGR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHCT-TSCCHHHHHHHTTCC------HHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------CCCHHHHCCCH
T ss_conf 999999999999998690-306799999986799------77445516999
No 17
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.92 E-value=7.9 Score=17.35 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+..-|.+.+-...+|+.|||+...|.
T Consensus 12 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~ 45 (58)
T d1ig7a_ 12 LLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEE
T ss_conf 9999999998788889999999999299940610
No 18
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=50.69 E-value=6 Score=18.17 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|.....+=.+.| +..-.+..||+..|++ ..|||.+|..+
T Consensus 13 r~~Il~aa~~l~~~~G-~~~~ti~~Ia~~agvs------~~t~Y~~F~~K 55 (81)
T d1rkta1 13 QAEILEAAKTVFKRKG-FELTTMKDVVEESGFS------RGGVYLYFSST 55 (81)
T ss_dssp HHHHHHHHHHHHHHHC-STTCCHHHHHHHHTSC------HHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999999859-2517799999986949------88998888499
No 19
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.29 E-value=8.1 Score=17.28 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+..-|.+.+....||..+||++..|.
T Consensus 9 ~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~ 42 (53)
T d1le8a_ 9 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42 (53)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999983899899999999999789988889
No 20
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=49.80 E-value=5.3 Score=18.49 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+..++.....+=.+.|| ..-.+..||+.++++. .|||.+|.-+
T Consensus 7 ~r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~------~~iY~~F~~k 50 (68)
T d2id3a1 7 IREAVLLAAGDALAADGF-DALDLGEIARRAGVGK------TTVYRRWGTP 50 (68)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHHHHCSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999999999998493-4077999999978688------7999998599
No 21
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.74 E-value=8.2 Score=17.23 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+...|.+.+..+.+|..+||++..|.
T Consensus 15 ~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~ 48 (66)
T d1bw5a_ 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999998789999999999999093978822
No 22
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=49.72 E-value=6.7 Score=17.81 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 6 r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~t~y~~F~~K 48 (72)
T d1pb6a1 6 KKAILSAALDTFSQFGF-HGTRLEQIAELAGVSK------TNLLYYFPSK 48 (72)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSCH------HHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998592-5067999999869786------7999888699
No 23
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=49.44 E-value=8.3 Score=17.20 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+......+|..|||+...|.
T Consensus 14 ~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~ 47 (65)
T d1fjla_ 14 LDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47 (65)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998699983899999999599878956
No 24
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=48.96 E-value=7.6 Score=17.47 Aligned_cols=42 Identities=7% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..||.....+=.+.|| ..-.+..||+..|++ ..|||.+|..+
T Consensus 7 e~Il~aa~~~~~~~G~-~~~ti~~Ia~~agvs------~~s~y~~F~~K 48 (79)
T d2fbqa1 7 ERILDAAEQLFAEKGF-AETSLRLITSKAGVN------LAAVNYHFGSK 48 (79)
T ss_dssp HHHHHHHHHHHHHHCS-TTCCHHHHHHHHTSC------HHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 9999999999998693-504099999998828------55787877699
No 25
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=48.05 E-value=6.3 Score=18.02 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|.....+=.+.| +..-.+..||+..+++. .|||.+|.-+
T Consensus 7 r~~Il~aa~~l~~~~G-~~~~t~~~Ia~~agvs~------~~~y~~F~~k 49 (75)
T d3c07a1 7 RALILETAMRLFQERG-YDRTTMRAIAQEAGVSV------GNAYYYFAGK 49 (75)
T ss_dssp HHHHHHHHHHHHHHTC-STTCCHHHHHHHHTSCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999999749-14077999999879398------7999898599
No 26
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=47.24 E-value=4.3 Score=19.10 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+.+++..+..+=.+.| +..-.+..||+..|++ ..|||.+|..+
T Consensus 8 ~~~I~~aa~~l~~~~G-~~~~sv~~Ia~~agvs------~~t~Y~~F~~k 50 (71)
T d2iu5a1 8 QKIIAKAFKDLMQSNA-YHQISVSDIMQTAKIR------RQTFYNYFQNQ 50 (71)
T ss_dssp HHHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSC------GGGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCC------CCHHHHHCCCH
T ss_conf 9999999999999849-6407799999875716------45897776799
No 27
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=47.04 E-value=9.1 Score=16.95 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+..-|.+.+....+|..|||+...|.
T Consensus 11 ~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~ 44 (53)
T d1p7ia_ 11 LARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44 (53)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999988788988999999999597868802
No 28
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=46.89 E-value=9.1 Score=16.94 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 99999998-2668999999999850887999999997644320222787069996188358770892489999988275
Q gi|254780856|r 45 LLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 (218)
Q Consensus 45 ~L~~vQ~~-~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi 122 (218)
+|...+++ .-+||-+ ++|+.+++++++|.-=.++...|-..-+| |.| +.|.+.+++.||+
T Consensus 14 ~L~~l~~~g~~~vSS~---~La~~~gi~~~qVRKDls~fG~~G~~g~G--Y~V-------------~~L~~~i~~iLGl 74 (74)
T d2dt5a1 14 ILEELEAQGVHRTSSE---QLGGLAQVTAFQVRKDLSYFGSYGTRGVG--YTV-------------PVLKRELRHILGL 74 (74)
T ss_dssp HHHHHHHTTCCEECHH---HHHHHHTSCHHHHHHHHHHTTCCCCTTTC--EEH-------------HHHHHHHHHHHTT
T ss_pred HHHHHHHCCCEEECHH---HHHHHHCCCHHHHHHHHHHHCCCCCCCCC--CCH-------------HHHHHHHHHHHCC
T ss_conf 9999998799159699---99999796999999879986578999999--019-------------9999999998483
No 29
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.59 E-value=8.8 Score=17.04 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
|..++..-..+=.+.|| ..-.+..||+.++++. .|||.+|..+.
T Consensus 2 R~~il~aa~~l~~~~G~-~~~si~~Ia~~agvs~------~t~Y~~F~sK~ 45 (70)
T d2gena1 2 KDEILQAALACFSEHGV-DATTIEMIRDRSGASI------GSLYHHFGNKE 45 (70)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCCH------HHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 99999999999998592-4087999999879587------79998987999
No 30
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=46.25 E-value=5.5 Score=18.41 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
++.++|..-..+=.+.|| ..-.+..||+.+|++ ..|||.+|..+.
T Consensus 4 ~r~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs------~~t~Y~~F~~K~ 48 (73)
T d1t56a1 4 RELAILATAENLLEDRPL-ADISVDDLAKGAGIS------RPTFYFYFPSKE 48 (73)
T ss_dssp HHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHTCC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 999999999999997591-507799999986988------889988884999
No 31
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=46.04 E-value=9.4 Score=16.85 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|..+-+...|.+.+-...||+.|||++..|-
T Consensus 13 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~ 46 (67)
T d1zq3p1 13 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46 (67)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 9999999998778778999999987099813310
No 32
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=45.56 E-value=9.3 Score=16.87 Aligned_cols=43 Identities=7% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|..-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 3 r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs~------~~~y~~F~~K 45 (71)
T d1jt6a1 3 KDKILGVAKELFIKNGY-NATTTGEIVKLSESSK------GNLYYHFKTK 45 (71)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTCCH------HHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998591-4067999999878587------5998888499
No 33
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=45.29 E-value=9.6 Score=16.78 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+..|...-+..-|++.+...++|..|||++..|-
T Consensus 9 ~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~ 42 (56)
T d9anta_ 9 TLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42 (56)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEE
T ss_conf 9999999975799999999999999399866700
No 34
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=45.18 E-value=5 Score=18.70 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.+..||.....+=.+.||- .-.+..||+..+++ ..|||.+|..+
T Consensus 8 ~r~~Il~aa~~l~~~~G~~-~~si~~Ia~~agvs------~~t~Y~~F~~K 51 (76)
T d2fd5a1 8 TRARILGAATQALLERGAV-EPSVGEVMGAAGLT------VGGFYAHFQSK 51 (76)
T ss_dssp HHHHHHHHHHHHHHHHTTT-SCCHHHHHHHTTCC------GGGGGGTCSCH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCC------CCCHHHCCCCH
T ss_conf 9999999999999984913-05699999983899------55004208999
No 35
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.00 E-value=9.7 Score=16.75 Aligned_cols=34 Identities=3% Similarity=0.023 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-...-|.+.+..+.||..|+|+...|.
T Consensus 16 ~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~ 49 (76)
T d2ecba1 16 LRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49 (76)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999998778889999999999689899999
No 36
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=44.10 E-value=5.9 Score=18.20 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1336999999999982668999999999850887999999997644320222
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
.+..++..-..+=.+.| +..-.+..||+..|+++ .|||.+|..+.
T Consensus 5 ~r~~Il~aa~~l~~~~G-~~~~s~~~Ia~~agvs~------~~iY~~F~sK~ 49 (74)
T d2g7sa1 5 KADDILQCARTLIIRGG-YNSFSYADISQVVGIRN------ASIHHHFPSKS 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGCCHHHHHHHHCCCH------HHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCC------CHHHHHCCCHH
T ss_conf 99999999999999859-15067999999878184------16988883999
No 37
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=43.49 E-value=10 Score=16.59 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|..+-...-|.+.+....||..|||+...|
T Consensus 14 l~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V 46 (68)
T d1ftta_ 14 VYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46 (68)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 999999998877777899999999849992524
No 38
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.81 E-value=9.8 Score=16.72 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 336999999999982668999999999850887999999997644320222
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
+..+|..-..+=.+.|| ..-.|..||+..+++. .|||.+|..+.
T Consensus 4 r~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~~~Y~~F~~K~ 47 (68)
T d2d6ya1 4 KARIFEAAVAEFARHGI-AGARIDRIAAEARANK------QLIYAYYGNKG 47 (68)
T ss_dssp HHHHHHHHHHHHHHHTT-TSCCHHHHHHHHTCCH------HHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCHH
T ss_conf 99999999999998592-5067999998878466------28988874999
No 39
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=42.25 E-value=8.2 Score=17.24 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..++..-..+=.+.| ...-.+..||+.+|++ ..|||.+|.-+
T Consensus 6 e~Il~aa~~l~~~~G-~~~~t~~~Ia~~agvs------~~slY~yF~~k 47 (72)
T d1zk8a1 6 QKIVETAAEIADANG-VQEVTLASLAQTLGVR------SPSLYNHVKGL 47 (72)
T ss_dssp HHHHHHHHHHHHHHC-GGGCCHHHHHHHHTSC------HHHHTTTCSSH
T ss_pred HHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCCH
T ss_conf 999999999999869-7756699999995979------99998988399
No 40
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.09 E-value=12 Score=16.25 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 26689999999998508879999
Q gi|254780856|r 53 EGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 53 ~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.|-+.+-.+.||..+||++.+|
T Consensus 23 ~pyPs~~e~~~La~~~gL~~~qV 45 (60)
T d1k61a_ 23 NPYLDTKGLENLMKNTSLSRIQI 45 (60)
T ss_dssp SCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89949999999999988099997
No 41
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.93 E-value=12 Score=16.24 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+.+|...-+..-|.+.+..+.||..|+|+...|.
T Consensus 38 Ql~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~ 72 (88)
T d1b72a_ 38 QLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72 (88)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEE
T ss_conf 99999999996788752789999998299977842
No 42
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=39.81 E-value=12 Score=16.22 Aligned_cols=44 Identities=5% Similarity=0.060 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 133699999999998266899999999985088799999999764432022
Q gi|254780856|r 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 38 ~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
++..++.....+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 5 ~r~~Il~aa~~l~~~~G~-~~~s~~~Ia~~agvs~------~t~Y~~F~~K 48 (74)
T d1v7ba1 5 KKEMILRTAIDYIGEYSL-ETLSYDSLAEATGLSK------SGLIYHFPSR 48 (74)
T ss_dssp HHHHHHHHHHHHHHHSCS-TTCCHHHHHHHHCSCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCC------CHHHHHCCCH
T ss_conf 999999999999998595-6357999998849692------2385507999
No 43
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=39.60 E-value=6.5 Score=17.93 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 3369999999999826689999999998508879999999976443202
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~ 87 (218)
|..+|.....+=.+.| +..-.+..||+..+++ ..|||.+|..
T Consensus 4 r~~Il~aa~~l~~~~G-~~~~si~~Ia~~agvs------~~~iy~~F~~ 45 (73)
T d1sgma1 4 REKILHTASRLSQLQG-YHATGLNQIVKESGAP------KGSLYHFFPN 45 (73)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCC------SCHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC------HHHHHHHCCC
T ss_conf 9999999999999849-2417799999986888------7799998599
No 44
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=38.12 E-value=12 Score=16.05 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 699999999998266899999999985088799999999764432022
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
.++..-..+=.++|-++ +..||+.+++++ .|||.+|..+
T Consensus 5 ~Il~aa~~l~~~~G~~t---i~~Ia~~agvs~------~~iY~~F~~K 43 (65)
T d2g7ga1 5 RIAEAALELVDRDGDFR---MPDLARHLNVQV------SSIYHHAKGR 43 (65)
T ss_dssp HHHHHHHHHHHHHSSCC---HHHHHHHTTSCH------HHHHTTSCHH
T ss_pred HHHHHHHHHHHHCCCCC---HHHHHHHHCCCC------CCHHHCCCCH
T ss_conf 99999999997867978---999998857061------3131158999
No 45
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=38.02 E-value=12 Score=16.19 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..++..-..+-.+.| ...-.+..||+.+|++. .+||.+|..+
T Consensus 6 r~~Il~aa~~l~~~~g-~~~~si~~ia~~~gvs~------~~~y~hF~~K 48 (68)
T d2g7la1 6 RRWIVDTAVALMRAEG-LEKVTMRRLAQELDTGP------ASLYVYVANT 48 (68)
T ss_dssp HHHHHHHHHHHHHHHC-SSSCCHHHHHHHTTSCH------HHHTTTCCSH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999999849-03078999999978287------6762877599
No 46
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=37.61 E-value=11 Score=16.33 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 36999999999982668999999999850887999999997644320222
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
..+|..-..+=.+.|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 4 ~~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs------~~~~y~~F~~K~ 46 (72)
T d1vi0a1 4 MQIIDAAVEVIAENGY-HQSQVSKIAKQAGVA------DGTIYLYFKNKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSC------HHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 9999999999998590-415599999987949------879988883999
No 47
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=37.21 E-value=6.6 Score=17.88 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..++..-...=.+.| +..-.+..||+.+|++. .|||.+|..+
T Consensus 5 R~~Il~aa~~l~~~~G-~~~~ti~~Ia~~agvs~------~~iY~~F~~k 47 (75)
T d2id6a1 5 RDAILKAAVEVFGKKG-YDRATTDEIAEKAGVAK------GLIFHYFKNK 47 (75)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCHHHHHHHHTCCT------HHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999999839-35167999998849988------8998888799
No 48
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=37.14 E-value=9.9 Score=16.68 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred HHHCCCCCCCCCCCCEE-EEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHH
Q ss_conf 88275647517788189-99532456677886799858341458898999999
Q gi|254780856|r 118 NKIHQKPLHRNSDGTLS-WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 (218)
Q Consensus 118 ~~Lgi~~gett~DG~ft-Le~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il 169 (218)
++.||..-+..-|.... .+...=+| -..-|.+.||+++.+...++++.+|+
T Consensus 22 ~~~~i~~~~~~i~~~~~~~~~~~~~g-~~tvP~i~i~g~~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 22 DRAGLAYNTVDISLDDEARDYVMALG-YVQAPVVEVDGEHWSGFRPERIKQLQ 73 (74)
T ss_dssp HHTTCCCEEEETTTCHHHHHHHHHTT-CBCCCEEEETTEEEESCCHHHHHHHH
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHC-CCCCCEEEECCEEEECCCHHHHHHHH
T ss_conf 97399648997248989999999847-99709799999999588984998820
No 49
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.69 E-value=13 Score=15.91 Aligned_cols=34 Identities=21% Similarity=-0.125 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+.+|...-+..-|.+.+..+.||..++|++..|.
T Consensus 20 ~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~ 53 (67)
T d1ocpa_ 20 RWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53 (67)
T ss_dssp HHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999987257999999999999847889999
No 50
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}
Probab=36.41 E-value=7.1 Score=17.65 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.0
Q ss_pred CCEEEECCHHH-CCCCHHHHHHHHHH
Q ss_conf 86799858341-45889899999999
Q gi|254780856|r 147 APMVMIGKDTY-EDLTPERLEEIIDA 171 (218)
Q Consensus 147 AP~~~Vn~~~y-~~lt~e~~~~il~~ 171 (218)
-|.+.||++++ +.++.+.+.++|++
T Consensus 147 TPt~~Ing~~~~g~~~~~~~~~~id~ 172 (172)
T d1z6ma1 147 VPTIIIGEYIFDESVTEEELRGYIEK 172 (172)
T ss_dssp SCEEEETTEEECTTCCHHHHHHHHTC
T ss_pred CCEEEECCEEECCCCCHHHHHHHHCC
T ss_conf 89898999980598999999999749
No 51
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.99 E-value=7.7 Score=17.43 Aligned_cols=29 Identities=14% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCCEEEECCHH--HCCCCHHHHHHHHHHHHC
Q ss_conf 88679985834--145889899999999982
Q gi|254780856|r 146 NAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 (218)
Q Consensus 146 ~AP~~~Vn~~~--y~~lt~e~~~~il~~Lr~ 174 (218)
.-|++.||++. ++.++++++.+.|++|.+
T Consensus 66 ~VPvl~idg~~~~~g~~d~~~L~~~L~~l~~ 96 (100)
T d1wjka_ 66 DIPVFHLNGQFLMMHRVNTSKLEKQLRKLSG 96 (100)
T ss_dssp SCSEEEESSSEEEESSCCHHHHHHHHHSSSC
T ss_pred CCCCEEECCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 5773364696479678999999999999766
No 52
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=35.83 E-value=12 Score=16.05 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHHH-HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 3699-9999999982668999999999850887999999997644320222
Q gi|254780856|r 40 SAVI-PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 (218)
Q Consensus 40 sali-p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P 89 (218)
..+| ..+.++.+..|| ..-.+..||+..|++ ..|||.+|..+.
T Consensus 5 ~~Ii~aa~~l~~e~~G~-~~~t~~~Ia~~agvs------~~~iy~hF~~K~ 48 (68)
T d1z0xa1 5 DTIIAAAFSLLEKSPTL-EQLSMRKVAKQLGVQ------APAIYWYFKNKQ 48 (68)
T ss_dssp HHHHHHHHHHHHHSCCG-GGCCHHHHHHHHTSC------HHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHCCCC-CCCCHHHHHHHHCCC------HHHHHHHCCCHH
T ss_conf 99999999999876792-316799999987726------568999629999
No 53
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.69 E-value=13 Score=15.80 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999867843213369999999999826689999999998508879999999976
Q gi|254780856|r 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 (218)
Q Consensus 24 ~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTF 81 (218)
..+.+.+..+--...+..++-.|+. .|-++ +..||+.++++.+.||.++.=
T Consensus 7 ~~l~~~L~~lGlt~~e~~v~~~L~~----~g~~t---~~eia~~~~i~~~~v~~~l~~ 57 (109)
T d1sfxa_ 7 GELVKALEKLSFKPSDVRIYSLLLE----RGGMR---VSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHH----HCCBC---HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH----CCCCC---HHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999985999999999999882----38998---999999857983559999999
No 54
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.38 E-value=14 Score=15.77 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999998266899999999985088799999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.+|-..=+..-|.+.+....||..|+|++..|-
T Consensus 14 ~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~ 46 (68)
T d2cuea1 14 EALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46 (68)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEE
T ss_conf 999999987689987899999999396933542
No 55
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=34.88 E-value=14 Score=15.72 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3699999999998266899999999985088799999999764432022
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
..|+.....+=.+.|| ..-.+..||+..|++. .+||.+|..+
T Consensus 4 e~i~~aa~~l~~~~G~-~~~ti~~Ia~~agvs~------~~iy~~F~sK 45 (69)
T d2np5a1 4 ERLAAALFDVAAESGL-EGASVREVAKRAGVSI------GAVQHHFSTK 45 (69)
T ss_dssp HHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 9999999999998491-4067999998839888------7998888399
No 56
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.64 E-value=14 Score=15.69 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-+..-|.+.+....||..|+|++..|
T Consensus 25 l~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV 57 (77)
T d1pufa_ 25 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQV 57 (77)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999998779999999999999809887780
No 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.43 E-value=14 Score=15.67 Aligned_cols=35 Identities=20% Similarity=0.033 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999998266899999999985088799999
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-+.+|...-....|.+.+....||+.|||++..|.
T Consensus 10 q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~ 44 (58)
T d1au7a1 10 AKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44 (58)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999988369999999999999689999999
No 58
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.65 E-value=11 Score=16.32 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999998266899999999985088799999
Q gi|254780856|r 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 45 ~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
+|..+-+..-|.+.+....+|..|||+...|.
T Consensus 12 ~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~ 43 (50)
T d1s7ea1 12 TLHAIFKENKRPSKELQITISQQLGLELSTVS 43 (50)
T ss_dssp HHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99999998799999999999999790988922
No 59
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=33.54 E-value=15 Score=15.57 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+..+|.....+=.+.|| ..-.+..||+..+++. .|||.+|.-+
T Consensus 6 r~~Il~aa~~l~~~~G~-~~~si~~Ia~~agvs~------~~~Y~~F~~K 48 (73)
T d2fx0a1 6 MENILKAAKKKFGERGY-EGTSIQEIAKEAKVNV------AMASYYFNGK 48 (73)
T ss_dssp HHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCH------HHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999998693-5176999999878486------4999888499
No 60
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=33.31 E-value=15 Score=15.55 Aligned_cols=42 Identities=10% Similarity=-0.102 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 699999999998266899999999985088799999999764
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY 82 (218)
+++..+...++-..-=|+++.+.+|+.+++++..+......+
T Consensus 200 ~~~~a~~~a~~~~~~~p~ea~~~~a~~~~i~~~~~~~~~~~~ 241 (277)
T d2nxoa1 200 KVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTL 241 (277)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 999999999999886999999999887098999999999738
No 61
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.62 E-value=15 Score=15.48 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999998-266899999999985088799999
Q gi|254780856|r 44 PLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 44 p~L~~vQ~~-~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
++|..+-.. .-|.+.+.++.||..+||+...|.
T Consensus 14 ~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~ 47 (59)
T d2cqxa1 14 DTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47 (59)
T ss_dssp THHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999884899599999999999781999999
No 62
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.40 E-value=9.7 Score=16.75 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999826689999999998508879999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V 75 (218)
+.+|...-...-|.+......||..+||+...|
T Consensus 13 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V 45 (60)
T d1yz8p1 13 LQQLEATFQRNRYPDMSTREEIAVWTNLTEARV 45 (60)
T ss_dssp HHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999999999769998679999999877985788
No 63
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.09 E-value=16 Score=15.20 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 369999999999826689999999998508879999999976
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTF 81 (218)
..+..+|...++..+||+- ..+|+.|+++..-|+--+..
T Consensus 7 eR~~~Il~~L~~~~~~vs~---~~La~~l~VS~~TI~rdi~~ 45 (65)
T d1j5ya1 7 ERLKSIVRILERSKEPVSG---AQLAEELSVSRQVIVQDIAY 45 (65)
T ss_dssp HHHHHHHHHHHHCSSCBCH---HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCH---HHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999985997859---99999979899999999999
No 64
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=29.09 E-value=15 Score=15.38 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999998266899999999985088799999999764432022
Q gi|254780856|r 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 45 ~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
++.+.. +.|| ..-.+..||+..+++. .|||.+|..+
T Consensus 9 A~~lf~-~~G~-~~~ti~~Ia~~agvs~------~~~Y~~F~~K 44 (69)
T d2i10a1 9 AMELFW-RQGY-EGTSITDLTKALGINP------PSLYAAFGSK 44 (69)
T ss_dssp HHHHHH-HHTT-TTCCHHHHHHHHTCCH------HHHHHHHCSH
T ss_pred HHHHHH-HHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 999999-8790-6277999999868786------2998888599
No 65
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.63 E-value=11 Score=16.36 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=38.2
Q ss_pred EEECCCHHHHHHCCHHHHHHHHHH---HCCCCCCCCCCCCEEEEEEC----CCCC-CCCCCEEEECCHH--HCCC-CHHH
Q ss_conf 996188358770892489999988---27564751778818999532----4566-7788679985834--1458-8989
Q gi|254780856|r 96 VQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVE----CQGA-CVNAPMVMIGKDT--YEDL-TPER 164 (218)
Q Consensus 96 I~VC~~~~C~l~G~~~l~~~l~~~---Lgi~~gett~DG~ftLe~v~----CLG~-C~~AP~~~Vn~~~--y~~l-t~e~ 164 (218)
|+|= |+.|. .+..+.+.+++. +|+. .+++.++ .+.. -..-|++.||+++ +|++ +.+.
T Consensus 4 IkVl-g~gC~--~C~~~~~~v~~a~~e~gi~---------a~v~kv~d~~ei~~ygVmstPalvIdg~vv~~G~vPs~~e 71 (77)
T d1iloa_ 4 IQIY-GTGCA--NCQMLEKNAREAVKELGID---------AEFEKIKEMDQILEAGLTALPGLAVDGELKIMGRVASKEE 71 (77)
T ss_dssp EEEE-CSSSS--TTHHHHHHHHHHHHHTTCC---------EEEEEECSHHHHHHHTCSSSSCEEETTEEEECSSCCCHHH
T ss_pred EEEE-CCCCC--CHHHHHHHHHHHHHHCCCC---------EEEEEECCHHHHHHCCCCCCCEEEECCEEEEEECCCCHHH
T ss_conf 9996-89995--3789999999999975995---------5999807999998759767887999999999734899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780856|r 165 LEEII 169 (218)
Q Consensus 165 ~~~il 169 (218)
+.++|
T Consensus 72 i~~~L 76 (77)
T d1iloa_ 72 IKKIL 76 (77)
T ss_dssp HHHHC
T ss_pred HHHHH
T ss_conf 99974
No 66
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.15 E-value=18 Score=14.98 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 69999999999826689999999998508879999999976
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTF 81 (218)
..+.+|...|+ .+|+|- +++|+.|+++..-|+.-+..
T Consensus 6 ~~~~iL~~L~~-~~~~s~---~eLa~~l~vS~~ti~r~i~~ 42 (63)
T d1biaa1 6 VPLKLIALLAN-GEFHSG---EQLGETLGMSRAAINKHIQT 42 (63)
T ss_dssp HHHHHHHHHTT-SSCBCH---HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCH---HHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999997-895879---99999989399999999999
No 67
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=27.65 E-value=18 Score=14.92 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8999999999998678432133699999999998266899999999985088799999999
Q gi|254780856|r 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 (218)
Q Consensus 19 s~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~Va 79 (218)
..+....+.+.+..-|+.. + -+-.|+. +-.-...+||+.||++...|....
T Consensus 8 ~~e~~~~l~~~l~~L~~~~-r--~v~~l~~-------~~~~s~~eIA~~lgis~~tv~~~~ 58 (71)
T d1rp3a2 8 KRELTEKVKEAVSKLPERE-K--LVIQLIF-------YEELPAKEVAKILETSVSRVSQLK 58 (71)
T ss_dssp HHHHHHHHHHHHTTSCHHH-H--HHHHHHH-------TSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHH-H--HHHHHHH-------HHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999987799999-9--9999998-------684899999999798999999999
No 68
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=27.02 E-value=16 Score=15.29 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 33699999999998266899999999985088799999999764432022
Q gi|254780856|r 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 39 ~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
|..+|.....+=.++|| ..-.+..||+.+|++. .+||.+|..+
T Consensus 7 r~~il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~------~~~Y~~F~~K 49 (75)
T d2hyja1 7 RGRILGRAAEIASEEGL-DGITIGRLAEELEMSK------SGVHKHFGTK 49 (75)
T ss_dssp HHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCH------HHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 99999999999997590-3076999999889098------9998888299
No 69
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.01 E-value=19 Score=14.85 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 658999999999998678432133699999999998266899999999985088799999999764432
Q gi|254780856|r 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 (218)
Q Consensus 17 ~fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f 85 (218)
+||.+....+.+.+.+||.+-. +--+.||+.+|-+ +.+|...|...
T Consensus 3 eWT~ee~~~le~Al~~~P~gt~--------------------~RW~~IA~~vgkt---~~ev~~~~k~l 48 (59)
T d2cqqa1 3 EWTEEDLSQLTRSMVKFPGGTP--------------------GRWEKIAHELGRS---VTDVTTKAKQL 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCT--------------------THHHHHHHHHTSC---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCC--------------------HHHHHHHHHHCCC---HHHHHHHHHHH
T ss_conf 8999999999999988799971--------------------7999999998979---99999999999
No 70
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=26.95 E-value=9.8 Score=16.71 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCE-EEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHH
Q ss_conf 48999998827564751778818-99953245667788679985834145889899999
Q gi|254780856|r 111 KLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 (218)
Q Consensus 111 ~l~~~l~~~Lgi~~gett~DG~f-tLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~i 168 (218)
.+...| ++.||+.-+..-|... ..+...=+| -..-|++.||+++.+...++++.+|
T Consensus 16 ~ak~~L-~~~~i~y~~~~i~~~~~~~~~~~~~g-~~tvP~i~i~~~~i~Gf~~d~i~~L 72 (76)
T d1h75a_ 16 ATKRAM-ENRGFDFEMINVDRVPEAAEALRAQG-FRQLPVVIAGDLSWSGFRPDMINRL 72 (76)
T ss_dssp HHHHHH-HHTTCCCEEEETTTCHHHHHHHHHTT-CCSSCEEEETTEEEESCCHHHHGGG
T ss_pred HHHHHH-HHCCCEEEEEEECCCHHHHHHHHHCC-CCCCCEEEECCEEEECCCHHHHHHH
T ss_conf 999999-86295368986058999999988617-9977989999999977898999887
No 71
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.60 E-value=18 Score=14.91 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999998266899999999985088799999999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~Va 79 (218)
.+|+..|+. ++-...+||+.++++...|+.-.
T Consensus 7 ~Il~~L~~n----~r~s~~eiA~~l~ls~~~v~~Ri 38 (60)
T d2cyya1 7 KIIKILQND----GKAPLREISKITGLAESTIHERI 38 (60)
T ss_dssp HHHHHHHHC----TTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHC----CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999982----89999999999893999999999
No 72
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.47 E-value=19 Score=14.79 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999998266899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
..+|...-...-|.+.+.+..||..|||++..|.
T Consensus 10 ~~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~ 43 (57)
T d1e3oc1 10 RVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43 (57)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999986578999999999999787999999
No 73
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.24 E-value=19 Score=14.76 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCEEEE-CCHHH-CCCCHHHHHHHHHHHHCC
Q ss_conf 867998-58341-458898999999999828
Q gi|254780856|r 147 APMVMI-GKDTY-EDLTPERLEEIIDAFSTG 175 (218)
Q Consensus 147 AP~~~V-n~~~y-~~lt~e~~~~il~~Lr~g 175 (218)
-|.+.+ |++++ |.++++.+.++|++.+..
T Consensus 122 TPt~~~~nG~~v~G~~~~e~l~~~i~~~~k~ 152 (156)
T d1eeja1 122 TPAVVLSNGTLVPGYQPPKEMKEFLDEHQKM 152 (156)
T ss_dssp SSEEECTTSCEEESCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8879971995825989999999999999998
No 74
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=25.78 E-value=17 Score=15.11 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999826689999999998508879999999
Q gi|254780856|r 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 (218)
Q Consensus 45 ~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V 78 (218)
+|...|+. +.-...+||+.+++|.+.|+.=
T Consensus 10 IL~~L~~~----~r~s~~eiA~~l~ls~~~v~~R 39 (63)
T d2cg4a1 10 ILEALMGN----ARTAYAELAKQFGVSPETIHVR 39 (63)
T ss_dssp HHHHHHHC----TTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHC----CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999983----8999999999989399999999
No 75
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=23.40 E-value=22 Score=14.41 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999982668999999999850887999999997
Q gi|254780856|r 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 (218)
Q Consensus 43 ip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaT 80 (218)
|-.++..+++.|++.. ..||+.|+++++-|-+.+-
T Consensus 9 Lk~I~~l~~~~~~v~~---~~iA~~L~vs~~SVs~mik 43 (61)
T d2ev0a1 9 IEQIYMLIEEKGYARV---SDIAEALAVHPSSVTKMVQ 43 (61)
T ss_dssp HHHHHHHHHHHSSCCH---HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCH---HHHHHHHCCCCHHHHHHHH
T ss_conf 9999999835897509---9999995899515999999
No 76
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=22.95 E-value=22 Score=14.35 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCCCCCCEEEEECCCHHHHHHCCHHHHHH
Q ss_conf 3699999999998266899999999985088799999999764432----022278706999618835877089248999
Q gi|254780856|r 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF----QLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 (218)
Q Consensus 40 salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f----~~~P~G~k~~I~VC~~~~C~l~G~~~l~~~ 115 (218)
|-||.=+-.. .+..||+..-+..|+..++++ ++..-+-||.-+ +.-|.. +-.+. -+-++++.+
T Consensus 5 ~~LM~dviaL-~e~rWi~~~~I~~i~~~~~l~--~~e~~I~F~~El~~l~R~iP~~------~f~d~----e~R~~lL~a 71 (91)
T d1xl3c1 5 SEFMGDIVAL-VDKRWAGIHDIEHLANAFSLP--TPEIKVRFYQDLKRMFRLFPLG------VFSDE----EQRQNLLQM 71 (91)
T ss_dssp HHHHHHHHHH-HHSTTCCHHHHHHHHHTTCCS--SHHHHHHHHHHHHHHHHTSCGG------GSSCH----HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCHH------HCCCH----HHHHHHHHH
T ss_conf 8999999999-996105899999999871797--4789989999999999978888------55898----999999999
Q ss_pred HHHHHCC
Q ss_conf 9988275
Q gi|254780856|r 116 CRNKIHQ 122 (218)
Q Consensus 116 l~~~Lgi 122 (218)
+++.|.-
T Consensus 72 ~Q~ALD~ 78 (91)
T d1xl3c1 72 CQNAIDM 78 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 77
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.81 E-value=22 Score=14.33 Aligned_cols=23 Identities=4% Similarity=-0.026 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 66899999999985088799999
Q gi|254780856|r 54 GWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 54 G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
-|.+.+..+.||..|+|++..|.
T Consensus 25 ~yP~~~~r~~LA~~lgL~~~~Vq 47 (72)
T d1uhsa_ 25 KHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 33899999999999399789999
No 78
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=22.73 E-value=22 Score=14.32 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998266899999999985088799999999764432022
Q gi|254780856|r 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~ 88 (218)
+|.....+=.+.|| ..-.+..||+.+|++. .|||.+|..+
T Consensus 4 Il~aA~~l~~~~G~-~~~s~~~Ia~~agvs~------~tiy~~F~~K 43 (62)
T d2vkva1 4 VINSALELGNEVGI-EGLTTRKLAQKLGVEQ------PTLYWHVKNK 43 (62)
T ss_dssp HHHHHHHHHHHHHH-HHCCHHHHHHHHTSCH------HHHHHHSCCH
T ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHCCCH------HHHHHHCCCH
T ss_conf 89999999998393-5178999998809888------8999888799
No 79
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=21.64 E-value=23 Score=14.18 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999826689
Q gi|254780856|r 42 VIPLLMRAQEQEGWVS 57 (218)
Q Consensus 42 lip~L~~vQ~~~G~Ip 57 (218)
+-+++..+.+..|++|
T Consensus 19 ~~~~~~~~~~~~G~vp 34 (190)
T d2prra1 19 IRQRILEVQDKAGFVP 34 (190)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHCCCH
T ss_conf 9999999999809987
No 80
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.46 E-value=22 Score=14.29 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999826689999999998508879999999
Q gi|254780856|r 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 (218)
Q Consensus 44 p~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~V 78 (218)
.+|+..|+. ++-...++|+.+++++..|+.-
T Consensus 7 kIl~~L~~n----~r~s~~~lA~~~gls~~~v~~R 37 (60)
T d1i1ga1 7 IILEILEKD----ARTPFTEIAKKLGISETAVRKR 37 (60)
T ss_dssp HHHHHHHHC----TTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHC----CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999884----9999999999989299999999
No 81
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=21.45 E-value=24 Score=14.16 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 6999999999982668999999999850887999999997644
Q gi|254780856|r 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 (218)
Q Consensus 41 alip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~ 83 (218)
.+-+++..+++++|++|. +-..|...|.-......||.
T Consensus 21 ~~~~~~~~~~~~~G~vpN-----~~~~la~~P~~l~a~~~~~~ 58 (190)
T d2pfxa1 21 ETQKYFEICQEKLGMVPN-----VLKAYAFNVEKLNAFTAMYN 58 (190)
T ss_dssp HHHHHHHHHHHHHSSCCH-----HHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH-----HHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999998199957-----99998729999999999999
No 82
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.01 E-value=24 Score=14.10 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999982-66899999999985088799999
Q gi|254780856|r 43 IPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVL 76 (218)
Q Consensus 43 ip~L~~vQ~~~-G~Ip~eai~~iA~~L~i~~~~V~ 76 (218)
.++|...-.+. .|.+.+.+..||+.|||+.-.|.
T Consensus 5 ~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~ 39 (52)
T d1x2ma1 5 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39 (52)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999786899399999999999796999989
Done!