BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E
subunit [Candidatus Liberibacter asiaticus str. psy62]
(218 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 218
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA
Sbjct: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI
Sbjct: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI
Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS
Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
>gi|224046085|ref|XP_002190748.1| PREDICTED: putative NADH dehydrogenase flavoprotein 2 [Taeniopygia
guttata]
gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata]
Length = 244
Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + E + F F+ E+ + +I+ YP +AV+ +L AQ Q GW+ +A+
Sbjct: 35 VHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 95 KVAEVLEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +P
Sbjct: 154 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +DD
Sbjct: 212 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRDD 243
>gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 249
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
2, 24kDa [Canis familiaris]
Length = 249
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 89/211 (42%), Positives = 121/211 (57%), Gaps = 4/211 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + +I YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQ 246
>gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Xenopus
(Silurana) tropicalis]
gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana)
tropicalis]
gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus
(Silurana) tropicalis]
Length = 243
Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 117/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + +I YP AVIP+L AQ Q GW+ +A+
Sbjct: 34 VHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHKAGAVIPVLDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L+M +RV E+ATFYT F PVG + HVQ+C TTPCML + ++E K+
Sbjct: 94 KVAEVLEMPAMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCMLCNSDSILEAIEKKLGI 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
SD + EVEC GACVNAPMV I + YEDLTP+ +E IID G+ P
Sbjct: 153 HVGETTSDKLFTLTEVECLGACVNAPMVQINDNYYEDLTPKDIENIIDELKAGK--VPTP 210
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL K G + D
Sbjct: 211 GPRNGRFSCEPAGGLTSLTG-PPKGPGFGVRAD 242
>gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2
[Oryctolagus cuniculus]
Length = 249
Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Nomascus leucogenys]
Length = 249
Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus]
Length = 259
Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 50 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMN 109
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 110 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 168
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 169 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKP 226
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R PAGGLTSL + K G +
Sbjct: 227 GPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 258
>gi|109121568|ref|XP_001099724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial [Macaca mulatta]
Length = 249
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Mus musculus]
gi|146345463|sp|Q9D6J6|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus]
gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus]
gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus]
gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus]
gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus]
gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus]
Length = 248
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 39 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMN 98
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 99 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 157
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 158 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKP 215
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R PAGGLTSL + K G +
Sbjct: 216 GPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247
>gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Callithrix jacchus]
Length = 249
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Rattus norvegicus]
gi|83305118|sp|P19234|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus]
gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a
[Rattus norvegicus]
Length = 248
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 39 VHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMN 98
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 99 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 157
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ +P
Sbjct: 158 KVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKP 215
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R PAGGLTSL + K G +
Sbjct: 216 GPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247
>gi|118086790|ref|XP_001232141.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial precursor (NADH-ubiquinone
oxidoreductase 24 kDa subunit) (NADH dehydrogenase
subunit II) isoform 1 [Gallus gallus]
gi|118086792|ref|XP_424129.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial precursor (NADH-ubiquinone
oxidoreductase 24 kDa subunit) (NADH dehydrogenase
subunit II) isoform 2 [Gallus gallus]
Length = 245
Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + E + F F+ E+ + +IS YP +AV+ +L AQ Q GW+ +A+
Sbjct: 36 VHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSAAVMAVLDLAQRQHGWLPISAMN 95
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 96 KVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKLGI 154
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +P
Sbjct: 155 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKP 212
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G + D
Sbjct: 213 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 244
>gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941]
gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str.
9-941]
Length = 237
Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 141/208 (67%), Positives = 172/208 (82%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI
Sbjct: 121 HHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+PGPQ R++S PA GLT+L ++ K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208
>gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Macaca mulatta]
Length = 249
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCML + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLGNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus]
Length = 248
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 39 VHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMN 98
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 99 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 157
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 158 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKP 215
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R PAGGLTSL + K G +
Sbjct: 216 GPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247
>gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Homo sapiens]
gi|20455499|sp|P19404|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
sapiens]
gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
sapiens]
gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
construct]
gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
construct]
gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
construct]
Length = 249
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M]
gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330]
gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus
2308]
gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840]
gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365]
gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445]
gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19]
gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
A]
gi|254689062|ref|ZP_05152316.1| NADH dehydrogenase subunit E [Brucella abortus bv. 6 str. 870]
gi|254693544|ref|ZP_05155372.1| NADH dehydrogenase subunit E [Brucella abortus bv. 3 str. Tulya]
gi|254697196|ref|ZP_05159024.1| NADH dehydrogenase subunit E [Brucella abortus bv. 2 str. 86/8/59]
gi|254701574|ref|ZP_05163402.1| NADH dehydrogenase subunit E [Brucella suis bv. 5 str. 513]
gi|254704121|ref|ZP_05165949.1| NADH dehydrogenase subunit E [Brucella suis bv. 3 str. 686]
gi|254706979|ref|ZP_05168807.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M163/99/10]
gi|254709914|ref|ZP_05171725.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94]
gi|254713915|ref|ZP_05175726.1| NADH dehydrogenase subunit E [Brucella ceti M644/93/1]
gi|254717027|ref|ZP_05178838.1| NADH dehydrogenase subunit E [Brucella ceti M13/05/1]
gi|254718915|ref|ZP_05180726.1| NADH dehydrogenase subunit E [Brucella sp. 83/13]
gi|254730092|ref|ZP_05188670.1| NADH dehydrogenase subunit E [Brucella abortus bv. 4 str. 292]
gi|256031407|ref|ZP_05445021.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M292/94/1]
gi|256044485|ref|ZP_05447389.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. Rev.1]
gi|256060918|ref|ZP_05451076.1| NADH dehydrogenase subunit E [Brucella neotomae 5K33]
gi|256159528|ref|ZP_05457296.1| NADH dehydrogenase subunit E [Brucella ceti M490/95/1]
gi|256254815|ref|ZP_05460351.1| NADH dehydrogenase subunit E [Brucella ceti B1/94]
gi|256257311|ref|ZP_05462847.1| NADH dehydrogenase subunit E [Brucella abortus bv. 9 str. C68]
gi|256369238|ref|YP_003106746.1| ATP synthase subunit E [Brucella microti CCM 4915]
gi|260168541|ref|ZP_05755352.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str.
16M]
gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330]
gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella
melitensis biovar Abortus 2308]
gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840]
gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365]
gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445]
gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus
S19]
gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
A]
gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915]
gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
Length = 237
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 141/208 (67%), Positives = 172/208 (82%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+PGPQ R++S PA GLT+L ++ K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208
>gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Bos taurus]
gi|128865|sp|P04394|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH dehydrogenase subunit
II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa
subunit; Flags: Precursor
gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus]
gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus]
gi|296473660|gb|DAA15775.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Bos taurus]
Length = 249
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|115502496|sp|Q0MQI8|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|115502498|sp|Q0MQI7|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla]
gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus]
Length = 249
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
[Ictalurus punctatus]
gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
[Ictalurus punctatus]
Length = 244
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ILD++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+
Sbjct: 95 KVAEILDVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ P
Sbjct: 154 KVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 212 GPRNGRFSCEPAGGLTSLTEPPPG-PGFGVRAD 243
>gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens]
gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
sapiens]
gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
sapiens]
gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens]
Length = 249
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Pan troglodytes]
gi|115502497|sp|Q0MQI9|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; AltName: Full=NADH-ubiquinone
oxidoreductase 24 kDa subunit; Flags: Precursor
gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes]
Length = 249
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase-like [Bos taurus]
Length = 254
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 45 VHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 104
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 105 KVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 163
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 164 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 221
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 222 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 253
>gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Pongo abelii]
Length = 249
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KIGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Meleagris gallopavo]
Length = 243
Score = 251 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 123/213 (57%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + E + F F+ E+ + +I YP +AV+ +L AQ Q GW+ +A+
Sbjct: 34 VHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 94 KVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKLGI 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +P
Sbjct: 153 EVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKP 210
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G + D
Sbjct: 211 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 242
>gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox
lucius]
Length = 244
Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ + ++ +IS YP Q+A IP+L AQ Q GW+ +A
Sbjct: 35 VHRDTPENNPDTPFEFTADDLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISATN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +RV E+ATFYT PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLEVPPMRVYEVATFYTMLLRQPVG-KYHIQICTTTPCMLCNSDSILEAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +D S EVEC GACVNAPMV I + YEDLTP+ +++IID G+ P
Sbjct: 154 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLTPKDMDKIIDELKAGK--IPPP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 212 GPRNGRFSCEPAGGLTSLTEPPPG-PGFGVRAD 243
>gi|227297|prf||1701345A NADH dehydrogenase FeS protein
Length = 249
Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QV TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVGTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457]
gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC
23457]
gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28]
gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90]
Length = 237
Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats.
Identities = 141/208 (67%), Positives = 171/208 (82%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+PGPQ R++S PA GLT+L + K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTKDLDYKK 208
>gi|149641744|ref|XP_001507932.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial precursor (NADH-ubiquinone
oxidoreductase 24 kDa subunit) (NADH dehydrogenase
subunit II) [Ornithorhynchus anatinus]
Length = 266
Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 58 HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 117
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA +L + +RV E+ATFYT + PVG + HVQVC TTPCMLR + ++E + K+ K
Sbjct: 118 VAEVLGVPPMRVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRDSDSILEAIQKKLGIK 176
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +PG
Sbjct: 177 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPG 234
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
P+ R S PAGGLTSL + K G +
Sbjct: 235 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 265
>gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens]
Length = 249
Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGESTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248
>gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens]
Length = 249
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGLGFGVQAG 248
>gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis]
Length = 451
Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats.
Identities = 88/212 (41%), Positives = 121/212 (57%), Gaps = 4/212 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 206 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 265
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 266 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 324
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 325 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 382
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
GP+ R S PAGGLTSL + K G +
Sbjct: 383 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGGSE 413
>gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3)
[Rattus norvegicus]
Length = 241
Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 32 VHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMN 91
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 92 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 150
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ +P
Sbjct: 151 KVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKP 208
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R PAGGLTSL + K G
Sbjct: 209 GPRSGRFCCEPAGGLTSLTE-PPKGPGFGVPAG 240
>gi|126321913|ref|XP_001370300.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV2
[Monodelphis domestica]
Length = 239
Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 30 VHRDTPENNPDTPFDFTPENYKRIEAIVKSYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 89
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 90 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKLGI 148
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K SD + EVEC GACVNAPMV I + YEDLTP+ +EEIID G +P
Sbjct: 149 KVGETTSDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGN--VPKP 206
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 207 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQSG 238
>gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus]
Length = 212
Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 3 VHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 62
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 63 KVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 121
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 122 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 179
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 180 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 211
>gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188]
gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC
49188]
Length = 385
Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 138/208 (66%), Positives = 171/208 (82%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W ++ I+++P R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEHVAGMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+PGPQ R++S P GLT+L ++ K+
Sbjct: 181 KPGPQDGRVTSEPINGLTALTEDLDYKK 208
>gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens]
Length = 231
Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 22 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 81
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG +QVC TTPCMLR + ++E + K+
Sbjct: 82 KVAEVLQVPPMRVYEVATFYTMYNRKPVGKYY-IQVCTTTPCMLRNSDSILEAIQKKLGI 140
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 141 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 198
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 199 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 230
>gi|194214480|ref|XP_001489155.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial precursor (NADH-ubiquinone
oxidoreductase 24 kDa subunit) (NADH dehydrogenase
subunit II) [Equus caballus]
Length = 246
Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 37 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISAMN 96
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 97 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 155
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIIDA G +P
Sbjct: 156 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDALKAG--TIPKP 213
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 214 GPRSGRFSCEPAGGLTSLTE-PPKGPGFGLQAG 245
>gi|256113341|ref|ZP_05454199.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 3 str. Ether]
gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
Length = 237
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 140/208 (67%), Positives = 171/208 (82%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+ GPQ R++S PA GLT+L ++ K+
Sbjct: 181 KSGPQDGRVTSEPASGLTALTEDLDYKK 208
>gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca]
Length = 209
Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 1 HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 60
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ K
Sbjct: 61 VAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIK 119
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +PG
Sbjct: 120 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKPG 177
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
P+ R S PAGGLTSL + K G +
Sbjct: 178 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 208
>gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
Length = 500
Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 141/215 (65%), Positives = 164/215 (76%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP SF+F++E+A W + + +YP R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1 MSVRRLADDSIQPQSFAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+E VA+ L M IRVLE+ATFYTQF L P+GTRAHVQVCGTTPCMLRG E L VC+ KI
Sbjct: 61 VEHVADRLKMPLIRVLEVATFYTQFMLQPIGTRAHVQVCGTTPCMLRGAEDLKAVCKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P HRNS GTLSWEEVECQGACVNAPMVMI KD YEDLTPERLEEIID F G G +
Sbjct: 121 HPVPFHRNSSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAGNGANV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ R S P GGLTSL ++ K+K++
Sbjct: 181 TTGPQNGRHQSVPIGGLTSLTEDYGDLIAKQKREG 215
>gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
Length = 203
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 126/204 (61%), Positives = 152/204 (74%), Gaps = 3/204 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRLA ++ QP+SF+F+EE+ + I++YP R SAVI +L RAQEQ GWVS A
Sbjct: 1 MSVRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VVA++L M YIRVLE+ATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61 AIRVVADMLGMPYIRVLEVATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGN--L 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
PGPQ R SAPAGG T+L +
Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202
>gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis]
Length = 244
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 123/213 (57%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+EE+ + +IS YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTAENNPETPFEFTEENKKRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPLSAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLEIPPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEALQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ P
Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGR--VPPP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G + D
Sbjct: 212 GPRGGRFSCEPAGGLTSLTE-PPKGPGFGVRSD 243
>gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
precursor [Danio rerio]
gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio]
Length = 244
Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ V +I+ YP +A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIINNYPEGHKAAATIPVLDLAQRQNGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L +A +RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLGIAPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +D + EVEC GACVNAPMV I + YEDL P +E+IID G+ P
Sbjct: 154 KVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGR--VPPP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 212 GPRSGRFSCEPAGGLTSLTEPPPG-PGVGVRAD 243
>gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512]
Length = 385
Score = 247 bits (630), Expect = 8e-64, Method: Composition-based stats.
Identities = 156/218 (71%), Positives = 182/218 (83%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+PG QIDRI SAP GG TSL K R + KK D S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218
>gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42]
gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
42]
Length = 385
Score = 247 bits (630), Expect = 8e-64, Method: Composition-based stats.
Identities = 156/218 (71%), Positives = 182/218 (83%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+PG QIDRI SAP GG TSL K R + KK D S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218
>gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii]
Length = 213
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 15 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 74
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+
Sbjct: 75 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKLGI 133
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 134 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 191
Query: 183 GPQIDRISSAPAGGLTSLLDNN 204
GP+ R S PAGGLTSL +
Sbjct: 192 GPRSGRFSCEPAGGLTSLTEPP 213
>gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo
salar]
Length = 244
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +D S EVEC GACVNAPMV I + YEDL+P+ +++I+D G+ P
Sbjct: 154 KAGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQILDELKAGK--VPPP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 212 GPRNGRFSCEPAGGLTSLSEPPPG-PGFGVRAD 243
>gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus
mordax]
Length = 244
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F++E+ + +IS YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPDNNPDTPFEFTDENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLEVPPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCNSDSILEAIKNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D S EVEC GACVNAPMV I + YEDL+P+ +EEIID G P
Sbjct: 154 KVGETTPDKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIEEIIDELKAG--TIPAP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLT L + G + D
Sbjct: 212 GPRNGRFSCEPAGGLTCLTEPPPG-PGFGVRAD 243
>gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx]
Length = 213
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 15 VHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 74
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 75 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEXIQKKLGI 133
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 134 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 191
Query: 183 GPQIDRISSAPAGGLTSLLDNN 204
GP+ R S PAGGLTSL +
Sbjct: 192 GPRSGRFSCEPAGGLTSLTEPP 213
>gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 388
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 155/218 (71%), Positives = 181/218 (83%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+PG QIDRI SAP GG TSL K R + KK D S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218
>gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
quinquefasciatus]
gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
quinquefasciatus]
Length = 241
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 96/219 (43%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+
Sbjct: 26 MSDNLFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWL 85
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+A+ VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC
Sbjct: 86 PISAMHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVC 144
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ K+ P DG + EVEC GACVNAPMV + D YEDLT + EEI+D G+
Sbjct: 145 KKKLGISPGETTKDGKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDTEEILDDLKQGK 204
Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
RPGP+ R +S PAGGLTSL ++ K G +
Sbjct: 205 --VPRPGPRNGRFASEPAGGLTSLTEDP-KGPGFGLQAG 240
>gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae
3841]
gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium
leguminosarum bv. viciae 3841]
Length = 388
Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 153/215 (71%), Positives = 181/215 (84%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+++A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PG QIDR+ SAP GG TSL K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGPTSLTTEEPKVRARAKKAD 215
>gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Oncorhynchus mykiss]
Length = 265
Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 56 VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 115
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 116 KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGI 174
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ P
Sbjct: 175 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPP 232
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 233 GPRNGRFSCEPAGGLTSLSEPPPG-PGFGVRAD 264
>gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii]
Length = 213
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 15 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 74
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+
Sbjct: 75 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKLGI 133
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 134 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--MPKP 191
Query: 183 GPQIDRISSAPAGGLTSLLDNN 204
GP+ R S PAGGLTSL +
Sbjct: 192 GPRSGRFSCEPAGGLTSLTEPP 213
>gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Sus scrofa]
gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa]
Length = 249
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F E+ + YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 100 KVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 158
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +P
Sbjct: 159 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKP 216
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + K G +
Sbjct: 217 GPRSGRFSCEPAGGLTSLTE-PPKGLGFGVQAG 248
>gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS278]
gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
(NDH-1, chain E) [Bradyrhizobium sp. ORS278]
Length = 203
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 126/204 (61%), Positives = 152/204 (74%), Gaps = 3/204 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRLA +E QP+SF+F++++ + I++YP R SAVI +L RAQEQ GWVS A
Sbjct: 1 MSVRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VVA++L M YIRVLEIATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61 AIRVVADMLGMPYIRVLEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGN--L 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
PGPQ R SAPAGG T+L +
Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202
>gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
LMG 3301]
gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
LMG 3301]
Length = 377
Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 141/208 (67%), Positives = 170/208 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP++F+F+ E+ W + I+++P R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IEHVAAMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+PGPQIDR +S P GLTSL + K+
Sbjct: 181 KPGPQIDRETSNPLNGLTSLTEELDYKK 208
>gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Anolis carolinensis]
Length = 289
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + +++ YP +AVIP+L AQ Q GW+ +A+
Sbjct: 80 VHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKSAAVIPVLDLAQRQHGWLPISAMN 139
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL M +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+
Sbjct: 140 KVAEILKMPPMRVYEVATFYTMYNRKPVG-KHHIQICTTTPCMLRDSDSILEAIQQKLGI 198
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K SD + EVEC GACVNAPMV I + YEDLT + +E+I+D G+ +P
Sbjct: 199 KVGETTSDQLFTLTEVECLGACVNAPMVQINDNYYEDLTTKDIEDILDELKAGK--VPKP 256
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S P GGLTSL + K G + D
Sbjct: 257 GPRNGRFSCEPVGGLTSLTE-PPKPPGFGVRSD 288
>gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 388
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 154/215 (71%), Positives = 181/215 (84%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PG QIDR+ SAP GGLTSL K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGLTSLTTEEPKARTRAKKAD 215
>gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens]
Length = 220
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 11 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 70
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + IRV E+ATFYT + PVG + H+Q C TTPCML + ++E + K+
Sbjct: 71 KVAEVLQVPPIRVYEVATFYTMYNRKPVG-KYHIQACTTTPCMLPNSDSILEAIQKKLGI 129
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ +P
Sbjct: 130 KLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IPKP 187
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGG T L + K G +
Sbjct: 188 GPRSGRFSCEPAGGPTPLTE-PPKGPGFGIQAG 219
>gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
C19]
gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
C19]
Length = 218
Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA QP+SF+FS E+ N I++YP +R QSAVIP+L Q+QEGWVS A
Sbjct: 1 MSVRRLA--AVQPASFAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A +L M IRV E+ATFYT F L PVG+ A +QVCGTTPCMLRG + L+ VC+ KI
Sbjct: 59 ISAIARLLGMPQIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSDALMAVCKAKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K ++DG +W+EVEC GAC NAPM I YEDLT E + +IID F+ G+ T
Sbjct: 119 GPK-DKLSADGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGK--TP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R +S P GG T+L D+ G K KI
Sbjct: 176 APGPYNGRKTSEPLGGATTLSDSK-LYDGSAAKAIKI 211
>gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37]
gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37]
Length = 242
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 112/205 (54%), Positives = 140/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF F+E + W E I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHPE--QPDSFEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+ +L MAYIR LE+ATFY FQL P G+ AH+Q+CGTT CM+ G E L+ VCR+KI
Sbjct: 60 YVSEMLGMAYIRGLEVATFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLMAVCRDKISA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP + DG SWEEVEC GAC NAPM IGKD YEDLT E+L ++DA +G+ +P
Sbjct: 120 KPHTLSEDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDAL--DKGEVPQP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S P GG T+L + +
Sbjct: 178 GPQNGRFASEPLGGATTLTEYTNAS 202
>gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894]
Length = 322
Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 155/215 (72%), Positives = 182/215 (84%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PG QIDRI SAP GGLTSL K + + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGLTSLTTEEPKAKTRAKKTD 215
>gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus
furcatus]
Length = 244
Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+
Sbjct: 95 KVAEILEVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ P
Sbjct: 154 EVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211
Query: 183 GPQIDRISSAPAGGLTSLL 201
GP+ R S PAGGLTSL
Sbjct: 212 GPRNGRFSCEPAGGLTSLT 230
>gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Silicibacter lacuscaerulensis ITI-1157]
gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Silicibacter lacuscaerulensis ITI-1157]
Length = 382
Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 118/206 (57%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHPE--QPESFAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VCR KI
Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCREKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E IID ++G+ P
Sbjct: 120 KPHQLSADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GGLTSL + K
Sbjct: 178 GPQNGRYAAEPKGGLTSLKEYEPGKA 203
>gi|163732061|ref|ZP_02139507.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
gi|161394359|gb|EDQ18682.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
Length = 359
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP +F+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2 LRRLHPD--QPETFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E LI VC+ KI +
Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLISVCQEKIAR 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL++ +S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLIEYDSGK 202
>gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Anoplopoma fimbria]
gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Anoplopoma fimbria]
Length = 244
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+EE+ + + +IS YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPDNNADTPFDFTEENKMRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++A +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+
Sbjct: 95 KVAEVLEVAPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEAIQNKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDL+P+ +E+IID G+ P
Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGR--VPLP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL++ K G + D
Sbjct: 212 GPRNGRFSCEPAGGLTSLIE-PPKGPGFGVRPD 243
>gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3]
gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria
pomeroyi DSS-3]
Length = 414
Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W ++++P R SAVIPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHPE--QPDSFAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQL PVGT AH+Q+CGTT CM+ G E LI VC+ KI
Sbjct: 60 AVADMLGMAYIRVLEVASFYFMFQLQPVGTVAHIQICGTTSCMICGAEDLIAVCKEKIAD 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC G+C NAPM IGKD YEDLT +R E++D + G+ P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S P GLTSL + +S K
Sbjct: 178 GPQNGRYASEPLKGLTSLTEYDSGK 202
>gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114]
gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh
114]
Length = 359
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 109/205 (53%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2 LRRLHPD--QPDSFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E L+ VC+ KI +
Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLVAVCQEKIAR 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202
>gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
Length = 422
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 141/216 (65%), Positives = 167/216 (77%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP +F FS+ + W + I YP R SAVIPLLMRAQEQEGWV++AA
Sbjct: 1 MSVRRLADETVQPDAFKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A +L M IRVLE+ATFYTQFQL+PVG RAHVQVCGTTPCMLRG ++++VC+ +I
Sbjct: 61 IEHIAEMLGMPLIRVLEVATFYTQFQLAPVGKRAHVQVCGTTPCMLRGAGEIMDVCKKRI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP + DG LSWEEVECQGACVNAPMVM+ KD+YEDLT ER+EEIIDAF G GD+I
Sbjct: 121 APKPFELSEDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
PGPQIDRI SAP GGLTSL ++ + K +K K
Sbjct: 181 PPGPQIDRIYSAPIGGLTSLTEDPTLKGARKTGKGK 216
>gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
Length = 244
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A+
Sbjct: 35 VHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTAMH 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+
Sbjct: 95 YVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P + DG + VEC GACVNAPMV + D YEDL + +EEI+D+ G+ +P
Sbjct: 154 GPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDLEAKDVEEILDSLKQGKR--PKP 211
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R+S P GGLTSL K G K + D
Sbjct: 212 GPRNGRLSCEPKGGLTSLTS-PPKGPGFKLRPD 243
>gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1]
Length = 217
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 145/206 (70%), Positives = 163/206 (79%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEYVAQMLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+ I
Sbjct: 121 HSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKNSDI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
GPQ R SS P GLTSL+D N
Sbjct: 181 AVGPQNGRKSSEPINGLTSLIDENEG 206
>gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 488
Score = 241 bits (614), Expect = 6e-62, Method: Composition-based stats.
Identities = 140/215 (65%), Positives = 163/215 (75%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ FQP F+F++E+A W I +YP R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1 MSVRRLADDAFQPHGFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQDQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA++L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L VCR+KI
Sbjct: 61 IEHVADMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGAEDLKAVCRSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P HRN GTLSWEEVEC GACVNAPMVMI D YEDLTPERLEEIID F G+G +
Sbjct: 121 HAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPERLEEIIDEFEAGRGGDV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R S P GGLT+L + +K
Sbjct: 181 KTGPQNGRHESVPIGGLTTLKGDYDDLVADQKSQG 215
>gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
Length = 266
Score = 241 bits (614), Expect = 6e-62, Method: Composition-based stats.
Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 5/211 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRL E QP SF FS E+ W +VI RYP R SAV+P+L RAQEQ GWV+ A
Sbjct: 1 MSVRRLHHE--QPESFEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I V++ +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E+LI+VC++KI
Sbjct: 59 IRVISEMLDMPRIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEELIKVCKSKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ P + DG SWEEVEC GACVNAPMV I KD YEDL E+ E+++D + G+ +
Sbjct: 119 SETPHTLSEDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGK--PV 176
Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRGK 210
PGPQ +DRI +AP GG T+LL+ +G
Sbjct: 177 LPGPQGVDRIFAAPEGGPTTLLNIEDTTKGA 207
>gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4]
gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
Length = 266
Score = 241 bits (614), Expect = 6e-62, Method: Composition-based stats.
Identities = 147/203 (72%), Positives = 174/203 (85%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP+SF+FSEE+A+W I +YP R QSAVIPLLMRAQEQ+GWV++A
Sbjct: 1 MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA+ LDM YIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+L+++C+ KI
Sbjct: 61 IEFVADKLDMPYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELMKICKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +PL RNS GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIIDAF G+G +
Sbjct: 121 HPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFEAGKGVEV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
+ GPQI+R+ SAP GGLTSL +
Sbjct: 181 KTGPQIERVFSAPEGGLTSLTEE 203
>gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476]
gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476]
Length = 223
Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats.
Identities = 145/204 (71%), Positives = 167/204 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG ++LI+VC+ KI
Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSDELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFGAGKGSEI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ R SS P GLTSLL++
Sbjct: 181 AVGPQNSRQSSEPISGLTSLLEDE 204
>gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
Length = 389
Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats.
Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP SF+F+ + W I+++P R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHPD--QPDSFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+ +L MAYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E L+ VC+ +I
Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCKERIAN 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC GAC NAPM IGKD YEDLT RL EI+D S G+ P
Sbjct: 120 KPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDGR--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S P GGLTSL D+ S +
Sbjct: 178 GPQNGRYASEPLGGLTSLTDHESGR 202
>gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
Length = 212
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 131/214 (61%), Positives = 160/214 (74%), Gaps = 3/214 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRLA +E QP+SF F++E+ W + I++YP R QSAVI +L RAQEQ GWVS A
Sbjct: 1 MSVRRLAPKELQPASFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L MA+IRV+EIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61 AIRAVADLLGMAHIRVMEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H ++DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G
Sbjct: 121 IHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
+PGPQIDR +AP GG L + K KK
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLQEVGDDATKKGKK 212
>gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110]
gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum
USDA 110]
Length = 203
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 124/203 (61%), Positives = 153/203 (75%), Gaps = 3/203 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRLA +E QP+SF+F+EE+ + + I++YP R SAVI +L RAQEQ GWVS A
Sbjct: 1 MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI V+A++LDM YIRVLE+ATFYT FQL+PVG +AHVQVCGTTPC LRG E LI VC ++
Sbjct: 61 AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH +P H + DG SWEEVEC GACVNAPMV+IGKDTYEDLT E +++D F++G
Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFASGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
+PGPQ R SAP G T+L +
Sbjct: 179 PKPGPQNGRQFSAPITGPTTLKE 201
>gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse]
gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse]
Length = 216
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 144/203 (70%), Positives = 166/203 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+Q+CGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLQPVGTKAHIQICGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
GPQ R SS P GLTSL+D+
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDD 203
>gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
Length = 217
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 146/208 (70%), Positives = 169/208 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R SS P GLTSL+D+ +K+
Sbjct: 181 AVGPQSSRKSSEPISGLTSLIDDEKEKK 208
>gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
Length = 246
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 119/215 (55%), Gaps = 6/215 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + E + F F++E+ V +I+ YP +AVIP+L AQ Q GW+ +A+
Sbjct: 35 VHRDSPENNPDTPFEFTQENLNRVKLIINNYPVGHEAAAVIPVLDLAQRQHGWLPLSAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL M +RV E+ATFYT F PVG + HVQ+C TTPC L G + ++E + K+
Sbjct: 95 KVAEILKMPRMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCNLGGVGSDVILEAIKKKL 153
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
D + EVEC GACVNAPMV I + YEDLT +EEI+D G+ T
Sbjct: 154 GINVGETTKDNMFTLIEVECLGACVNAPMVQINDNYYEDLTAADMEEILDDLMAGK--TP 211
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GP+ R +S P GLTSL G +DD
Sbjct: 212 KAGPRNGRFASEPLSGLTSLTT-PPTGPGFGVRDD 245
>gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
2 [Strongylocentrotus purpuratus]
gi|115950058|ref|XP_001178801.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
2 [Strongylocentrotus purpuratus]
Length = 242
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 93/213 (43%), Positives = 127/213 (59%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R ++ + F F+EE+ VN++I+ YP +A +P+L AQ Q GW +A+
Sbjct: 33 VHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISAMN 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+
Sbjct: 93 KVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T +P
Sbjct: 152 KVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TPKP 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P GGLTSL+D G +DD
Sbjct: 210 GPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 241
>gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Brevundimonas sp. BAL3]
gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Brevundimonas sp. BAL3]
Length = 225
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/215 (52%), Positives = 141/215 (65%), Gaps = 6/215 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP+SF+FS ++ I +YP SR QSAVIP+L Q+QEGWVS A
Sbjct: 1 MSVRRLAKE--QPASFAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I + +L M +IRVLE+ATFYT F L PVG A +QVCGTTPCMLRG +L++VC+ KI
Sbjct: 59 IRAIGELLGMPFIRVLEVATFYTMFMLEPVGKTALIQVCGTTPCMLRGANELMKVCKEKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K H ++DG +W+EVEC GAC NAPM I +EDLTPE L +IID F+ G+ T
Sbjct: 119 GPK-DHLSADGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGK--TP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PG R +S PAGG +LLD G +
Sbjct: 176 KPGSYQGRATSEPAGGAKTLLDPK-LYDGSAAQPI 209
>gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase, E subunit subfamily [polymorphum
gilvum SL003B-26A1]
gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Polymorphum gilvum SL003B-26A1]
Length = 378
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 120/211 (56%), Positives = 144/211 (68%), Gaps = 5/211 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+VRRLA E QP F+F+ ++ W +VI RYP R SAVIPLL RAQEQ GWV
Sbjct: 1 MAVRRLAAE--QPDHFAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++L M +IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI VC++K
Sbjct: 59 AIRYIADMLGMPHIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGAEDLIRVCKSK 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE LE++I+ + G+
Sbjct: 119 IAAHAHDLSADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGR--E 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
+ PGPQ R S P GG TSL + G
Sbjct: 177 VTPGPQNGRRFSMPEGGATSLTEIEDDTAGA 207
>gi|209885056|ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
carboxidovorans OM5]
gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
carboxidovorans OM5]
Length = 250
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 130/212 (61%), Positives = 158/212 (74%), Gaps = 3/212 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+VRRLA +E QP SF F++E+ W + I ++PP R QSAVIP+L R QEQ GWVS A
Sbjct: 1 MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L MA+IRVLEIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61 AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H + DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G
Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
+PGPQIDR +AP GG L D + G+
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLKDITASGDGRG 210
>gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
granulosus HTCC2516]
gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
granulosus HTCC2516]
Length = 425
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 117/207 (56%), Positives = 143/207 (69%), Gaps = 4/207 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHHE--QPESFAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L MAYIR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E+L+E+C+ KI
Sbjct: 60 AVAEMLGMAYIRALEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEELMELCKTKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDLTP +LE ++D + G+ P
Sbjct: 120 RPHELSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGR--VPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
GPQ R +S PA GLTSL + G
Sbjct: 178 GPQNGRYASEPASGLTSLKAYEEGRDG 204
>gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
Length = 251
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 124/215 (57%), Positives = 156/215 (72%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A
Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61 AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++G
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFASGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+PGPQIDR SAP GG T+L +K G ++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGRRAS 213
>gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus
CB 48]
gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus
CB 48]
Length = 221
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 117/217 (53%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA QP SF+F E+ N I++YP +R QSAVIP+L Q+QEGWVS A
Sbjct: 1 MSVRRLA--AVQPDSFAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I VVA +L MA IRV E+ATFYT F L PVG+ A +QVCGTTPC LRG E L++VC++KI
Sbjct: 59 IAVVAEMLGMARIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCQLRGSEALMKVCKDKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K ++DG W+EVEC GAC NAPM I YEDLTP+ L +IID FS G+ T
Sbjct: 119 GPK-DKLSADGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGK--TP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ GP R +S P GG T+L D S G K KI
Sbjct: 176 KTGPYNGRFTSEPLGGATTLKD-PSLYDGSAAKPLKI 211
>gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Acyrthosiphon pisum]
Length = 240
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A
Sbjct: 29 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 88
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+
Sbjct: 89 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 147
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T
Sbjct: 148 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 205
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PGP+ R +S P GLTSL + G K + D
Sbjct: 206 TPGPRSSRYASEPMDGLTSLKE-EPYGPGFKVRPD 239
>gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
Length = 382
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 116/206 (56%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP SF+F++ + W IS+YP R SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHPD--QPESFAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +LDMAYIRVLE+ATFY FQL PVG+ AHVQ+CGTT CM+ G E L+ VC++KI
Sbjct: 60 AVAEMLDMAYIRVLEVATFYFMFQLQPVGSVAHVQICGTTTCMICGAEDLMAVCKDKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P
Sbjct: 120 KAHEVSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R SS P GG L ++ +
Sbjct: 178 GPQNGRYSSEPKGGPVVLTEHVEGRA 203
>gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
Length = 468
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 116/211 (54%), Positives = 147/211 (69%), Gaps = 5/211 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+VRRLA E QP F F+ ++ W ++I RYP R SAVIPLL RAQEQ GWV
Sbjct: 1 MAVRRLAAE--QPECFEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++LD+ +IRVLE+ATFYT FQL PVG++AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59 AIRYIADMLDIPHIRVLEVATFYTMFQLQPVGSKAHIQVCGTTPCQLRGSEDLIKICKSR 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + G+
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAEGK--E 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
+ PGPQ R S P GG TSL + N +G+
Sbjct: 177 VMPGPQNGRRFSMPEGGQTSLTEVNDNSKGE 207
>gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes
aegypti]
gi|108878788|gb|EAT43013.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
Length = 240
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+EE+ VN +++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 31 VHRDTAEDNPSIPFEFTEENKKRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 90
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+IL + +RV E+ATFYT F P GT HVQVC TTPC LRG ++++ C+ K+
Sbjct: 91 RVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKLGI 149
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
DG + EVEC GACVNAPM+ + D YEDLT + EI+ G+ RP
Sbjct: 150 GAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VPRP 207
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P GGLTSL + K G +
Sbjct: 208 GPRNGRFASEPTGGLTSLTE-EPKGPGFGMQTG 239
>gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021]
gi|307301094|ref|ZP_07580863.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
BL225C]
gi|8473988|sp|P56909|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName:
Full=NADH dehydrogenase I subunit E 1; AltName:
Full=NDH-1 subunit E 1
gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021]
gi|306904049|gb|EFN34635.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
BL225C]
Length = 275
Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 148/217 (68%), Positives = 171/217 (78%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGPQIDR+ SAP GGLT+L + K + K
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKSVRASKA 217
>gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040]
gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040]
Length = 398
Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGW+S+ AIE
Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQL P G+ AH+Q+CGTT CM+ G E L+ +C++KI
Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP + DG SWEEVEC G+C NAPM IGKD YEDLT +++D + G+ + P
Sbjct: 120 KPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGK--PVVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GLTSL + + K
Sbjct: 178 GPQNGRYAAEPKAGLTSLTEYEAGKP 203
>gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum]
Length = 212
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A
Sbjct: 1 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+
Sbjct: 61 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 119
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T
Sbjct: 120 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 177
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PGP+ R +S P GLTSL + G K + D
Sbjct: 178 TPGPRSSRYASEPMDGLTSLKE-EPYGPGFKVRPD 211
>gi|260462234|ref|ZP_05810478.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
WSM2075]
gi|259032094|gb|EEW33361.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
WSM2075]
Length = 426
Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats.
Identities = 130/211 (61%), Positives = 161/211 (76%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H H N GTLSWEEVEC GACVNAPMVM+ KDT+EDLTPERL EIID + G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
PGPQ R S PA GLT+L + + + +
Sbjct: 181 APGPQNGRTGSEPATGLTTLKNEKAILKSTR 211
>gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
sp. SE45]
gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
sp. SE45]
Length = 388
Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats.
Identities = 114/201 (56%), Positives = 136/201 (67%), Gaps = 4/201 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ ++ W I++YP R SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHPE--QPESFAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VC+ KI
Sbjct: 60 TVADMLGMAYIRVLEVATFYFMFQLQPVGSVAHVQVCGTTTCMICGAEDLIGVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K + DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P
Sbjct: 120 KAHVVSPDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDN 203
GPQ R S P GG L +
Sbjct: 178 GPQNGRYGSEPLGGPVVLTAH 198
>gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3]
Length = 225
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 147/204 (72%), Positives = 166/204 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H KP N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGRGSNI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ +R SS P GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204
>gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 203
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 175/203 (86%), Positives = 188/203 (92%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA
Sbjct: 1 MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI
Sbjct: 61 IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I
Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
RPGPQIDRISSAPAGGLTSL++
Sbjct: 181 RPGPQIDRISSAPAGGLTSLVEE 203
>gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F FS ++ V +++ YP ++A+IPLL AQ Q GW+ +A+
Sbjct: 34 VHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPLLDLAQRQYGWLPISAMH 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++ + +
Sbjct: 94 HVADILKLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSNEILDTIKKNLGL 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ +SD + EVEC GACVNAPMV I D YEDLT + EEI+ G+ +P
Sbjct: 153 EVGETSSDKLFTISEVECLGACVNAPMVQINDDYYEDLTVQDTEEILADLKAGR--KPKP 210
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P G TSL G + D
Sbjct: 211 GPRSGRYAAEPIGEPTSLKGEPPA-AGFGVRAD 242
>gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
ATCC 17100]
gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
ATCC 17100]
Length = 341
Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats.
Identities = 110/213 (51%), Positives = 136/213 (63%), Gaps = 7/213 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRL + QPS F F+ E+ W E I +YP R Q+AV+PLL RAQEQ W+
Sbjct: 1 MSVRRL--DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI V ++L M YIRV E+ATFY+ F LSPVG R HVQVCGTTPCMLRG E + +VC+ +
Sbjct: 59 AIRYVGDLLGMPYIRVYEVATFYSMFNLSPVG-RYHVQVCGTTPCMLRGAEDIKKVCKRE 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I +G SW EVEC GACVNAPMV I D YEDLTPE E ++ G+
Sbjct: 118 IG-DEREVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGR--E 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
++PG QI R SAP GG T+LL + +K+ +
Sbjct: 175 VKPGSQIGRQCSAPEGGPTTLLFEDEEKQEPQT 207
>gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
Length = 228
Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 127/215 (59%), Positives = 156/215 (72%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRLA +E QP SF+FSEE+ W + I +YP R SA I +L RAQEQ GWVS A
Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+N+
Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+PGPQIDR SAP GG T+L +K G ++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGQRAS 213
>gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii]
Length = 201
Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 3/195 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+ E+ + +++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 10 VHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 69
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 70 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGI 128
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K D + EVEC GACVNAPMV I YEDLTP+ +EEIID G+ +P
Sbjct: 129 KVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDELKAGK--IPKP 186
Query: 183 GPQIDRISSAPAGGL 197
GP+ R S PAGGL
Sbjct: 187 GPRSGRFSCEPAGGL 201
>gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
Length = 437
Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 117/210 (55%), Positives = 146/210 (69%), Gaps = 5/210 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+VRRLA E QP SF+F+E++ W ++I RYP R SAVIPLL RAQEQ GWVS
Sbjct: 1 MAVRRLAAE--QPESFAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59 AIRYIAELLDMPKIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + G+
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGK--E 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
+ PGPQ R + GG TSL + + +G
Sbjct: 177 VTPGPQNGRRFAMAEGGQTSLTELDDDTKG 206
>gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
KLH11]
gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
KLH11]
Length = 365
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHPE--QPDSFAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI
Sbjct: 60 SVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E +++D G+ P
Sbjct: 120 KPHVLSADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGR--VPIP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL ++S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTAHDSGR 202
>gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 225
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 146/204 (71%), Positives = 164/204 (80%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ +R SS P GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204
>gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C]
Length = 223
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 146/204 (71%), Positives = 164/204 (80%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ +R SS P GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204
>gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
BisB5]
Length = 249
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 120/203 (59%), Positives = 149/203 (73%), Gaps = 3/203 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RAQEQ G W+ A
Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI V+ ++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++
Sbjct: 61 AIRVIGDMLGMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH PLH ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F +G
Sbjct: 121 IHHDPLHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVSGN--K 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
+PGPQ R +AP G T+L
Sbjct: 179 PKPGPQNGRQYAAPISGPTTLKT 201
>gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
Length = 421
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+ +L +AYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI
Sbjct: 60 HVSEMLGLAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K + DG SWEEVEC GAC NAPM IGKD YEDLT E +ID + G+ P
Sbjct: 120 KAHQISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S P GLTSL D +S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDYDSGK 202
>gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
Length = 384
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 110/216 (50%), Positives = 143/216 (66%), Gaps = 4/216 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ ++ W +++YP R SAVIPLL RAQEQEGWVS+ A+E
Sbjct: 2 LRRLHSE--QPESFAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQ+ P G+ AHVQ+CGTT CM+ G E L+ +C+ KI +
Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLVAICKEKIAE 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E ++D + G+ + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGK--KVVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
GPQ R ++ P GLTSL + +S K S
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGKTQYNASAQLAS 213
>gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
Length = 225
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 147/204 (72%), Positives = 166/204 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI
Sbjct: 61 IEHIAELLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H KP N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I
Sbjct: 121 HYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSDI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ +R SS P GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204
>gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
CGA009]
gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
TIE-1]
Length = 249
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 120/203 (59%), Positives = 148/203 (72%), Gaps = 3/203 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ G W+ A
Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+
Sbjct: 61 AIRTVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F++G
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
PGPQ R +AP G T+L
Sbjct: 179 PTPGPQNGRQHAAPMTGPTTLKS 201
>gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
HaA2]
Length = 249
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 119/203 (58%), Positives = 151/203 (74%), Gaps = 3/203 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+F+EE+ W I++YPP+R SAVI ++ RAQEQ G W+ A
Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI V++++L+M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++
Sbjct: 61 AIRVISDMLEMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F+ G
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAAGN--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
+PGPQ R +AP G T+L
Sbjct: 179 PKPGPQNGRQYAAPITGPTTLKT 201
>gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419]
gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
WSM419]
Length = 273
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 150/220 (68%), Positives = 173/220 (78%), Gaps = 3/220 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61 IEKIADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G +
Sbjct: 121 AGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFEAGKGTDV 180
Query: 181 RPGPQIDRISSAPAGGLTSLL---DNNSKKRGKKKKDDKI 217
PGPQIDRI SAP GGLT+L + R K K+++
Sbjct: 181 VPGPQIDRIYSAPIGGLTTLQAPAEEKKPARASKAKEEQA 220
>gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
Length = 245
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 111/207 (53%), Positives = 139/207 (67%), Gaps = 4/207 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS+RRL QP SF+FS+E+ W + +YP R SAVIP+L RAQEQEGW+S+ A
Sbjct: 1 MSIRRLH--TTQPDSFTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE V +L+M +IRVLE+A+FY FQL+PVG+ AH+QVCGT CM+ G E LI +C+ I
Sbjct: 59 IEAVGELLEMPFIRVLEVASFYFMFQLAPVGSVAHIQVCGTLSCMICGAEDLIGICKEII 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+KP + DG LSWEEVEC GAC NAPM IGKD YEDLT I++ +G+
Sbjct: 119 SEKPHELSEDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQL--LKGEVP 176
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKK 207
PGPQ R +S P GLT+L D NS K
Sbjct: 177 TPGPQNGRYASEPLSGLTTLSDFNSGK 203
>gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
Length = 224
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 118/203 (58%), Positives = 139/203 (68%), Gaps = 7/203 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA E QP+SF+FS E+ W + I++YP R SAVIPLL +AQEQ G W+
Sbjct: 1 MSVRRLAAE--QPASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VVA+ L MAYIRVLEIATFYT F L PVG R VQ+CGTTPC LRG +KL EVC K
Sbjct: 59 AIRVVADKLGMAYIRVLEIATFYTMFNLEPVG-RHFVQLCGTTPCALRGADKLKEVCHRK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + H DG LSW EVEC GAC NAPMV + D +EDLTPE LE+++D G+
Sbjct: 118 IGPE-RHVTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
++ G Q R +SAP GG TSL D
Sbjct: 175 VKTGSQTGRQASAPEGGRTSLTD 197
>gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58]
gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
str. C58]
Length = 369
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 148/203 (72%), Positives = 170/203 (83%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61 IEKVADMLDMAYIRVLEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+
Sbjct: 121 HHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
+ GPQIDR S P GGLT+L +
Sbjct: 181 KTGPQIDRHESVPVGGLTTLTEE 203
>gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Thalassiobium sp. R2A62]
gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Thalassiobium sp. R2A62]
Length = 366
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHHE--QPDSFAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+ +LD+A+IR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E LI VC++KI
Sbjct: 60 HVSTMLDLAFIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLIGVCQDKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP H ++DG SWEEVEC GAC NAPM IGKD YEDL ERL EII+ G+ P
Sbjct: 120 KPHHLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGK--VPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S +
Sbjct: 178 GPQNGRFAAEPLSGLTSLTEYDSGR 202
>gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
Length = 460
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL ++ QP SF+F+ E+ W +++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHKD--QPESFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LI VC+ I
Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEDLIAVCQEMIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC GAC NAPM IGKD YEDLT ERL EI+ + G+ P
Sbjct: 120 KAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELAEGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202
>gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1]
gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str.
Houston-1]
Length = 222
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 146/204 (71%), Positives = 166/204 (81%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A IL MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61 IEHIAQILSMAYIRVLEIATFYTQFQLQPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H KP N DG+LSWEEVEC GACVNAPMVMI KDTYEDLT +RLEEIIDAF G+G I
Sbjct: 121 HHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFEAGKGAEI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
GPQ R SS P GLTSL+D
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDEK 204
>gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193]
gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193]
Length = 383
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ E+ W ++++P R SAVIPLL RAQEQEGWVS+ AIE
Sbjct: 2 LRRLHSE--QPESFAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A++L MAYIRVLE+ +FY FQ+ P G+ AHVQ+CGTT CM+ G E LI VC++KI
Sbjct: 60 YIADMLGMAYIRVLEVCSFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + G+ + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGK--KVVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202
>gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1]
gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1]
Length = 345
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 150/203 (73%), Positives = 171/203 (84%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+VRRLA+E QP F+F+ E+ W + I +YPP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MAVRRLADEAVQPQGFAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA +LDM IRVLE+ATFYTQFQL+PVGTRAHVQVCGTTPCMLRG LIEVC+++I
Sbjct: 61 IEHVAKMLDMPLIRVLEVATFYTQFQLAPVGTRAHVQVCGTTPCMLRGAGDLIEVCKSRI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P H N GTLSWEEVECQGACVNAPM+MI KD+YEDLTPERLEEIIDAF G+GDTI
Sbjct: 121 HPEPFHTNEGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGKGDTI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
+PG QIDR++SAPA GLTSL D
Sbjct: 181 KPGTQIDRLTSAPASGLTSLTDE 203
>gi|307317828|ref|ZP_07597266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
AK83]
gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti]
gi|306896590|gb|EFN27338.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
AK83]
Length = 276
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 150/218 (68%), Positives = 174/218 (79%), Gaps = 2/218 (0%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
PGPQIDR+ SAP GGLT+L + +KKK + S
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVE--EKKKPVRAS 216
>gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Labrenzia alexandrii DFL-11]
gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Labrenzia alexandrii DFL-11]
Length = 418
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 118/211 (55%), Positives = 142/211 (67%), Gaps = 5/211 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+VRRLA E QP SF F+EE+ W ++I RYP R SAVIPLL RAQEQ GWVS
Sbjct: 1 MAVRRLAAE--QPDSFEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59 AIRYIADLLDMPNIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + + DG SWEEVEC GACVNAPMV I KDTYEDLT E +++D G
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDAGND-- 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
+ PGPQ R S GG TSL + +G
Sbjct: 177 VTPGPQNGRRFSMAEGGQTSLTEIEDDTKGT 207
>gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
Length = 436
Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 138/205 (67%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+ +L MAYIR LE+ATFY FQL PVG AH Q+CGTT CM+ G E LIEVC+ +I
Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGEVAHFQICGTTSCMICGAEDLIEVCKERIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC GAC NAPM IGKD YEDLT + +ID + GQ P
Sbjct: 120 KAHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQ--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S P GLTSL D++S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDHDSGK 202
>gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
R11]
gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
R11]
Length = 391
Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHSE--QPESFAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC+ KI
Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCKEKIAN 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202
>gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
radiobacter K84]
gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
radiobacter K84]
Length = 381
Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 147/214 (68%), Positives = 180/214 (84%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+F++E+A+W + I +YP R QSA+IPL+MRAQEQEGWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMA+IR LE+ATFYTQFQL+PVGT+AH+QVCGTTPCMLRG E L++VC++KI
Sbjct: 61 IETIADMLDMAHIRALEVATFYTQFQLNPVGTKAHIQVCGTTPCMLRGAEGLVKVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ RN+DGTLSWEEVECQGACVNAPMV+IGKDTYEDLTPERLEEIIDAFS G+G +
Sbjct: 121 NGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFSAGEGSKV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
GPQIDR+ SAP GGLTSL K + K
Sbjct: 181 PTGPQIDRVFSAPEGGLTSLTTEAPKAKSASGKA 214
>gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
Length = 369
Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats.
Identities = 146/203 (71%), Positives = 170/203 (83%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61 IEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+
Sbjct: 121 HHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
+ GPQIDR S P GGLT+L +
Sbjct: 181 KTGPQIDRHQSVPVGGLTTLTEE 203
>gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
Length = 250
Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats.
Identities = 124/215 (57%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A
Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+PGPQIDR SAP GG T+L G++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAKGDGGRRSAA 213
>gi|163741488|ref|ZP_02148879.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
gi|161385222|gb|EDQ09600.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
Length = 397
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI
Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAN 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202
>gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12]
gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL
12]
Length = 402
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP+ F+F+ E+ W ++++P R SA+IP+L RAQEQEGW+S+ AIE
Sbjct: 2 LRRLHAE--QPADFAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++LDM YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E L+ VC+ KI
Sbjct: 60 YVADMLDMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCMICGAEDLVAVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++D + G+ P
Sbjct: 120 RAHQLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGE--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R +S PAGGLTSL + + K
Sbjct: 178 GPQNGRYTSEPAGGLTSLTEYEAGKD 203
>gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
49242]
gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
49242]
Length = 202
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 103/208 (49%), Positives = 131/208 (62%), Gaps = 7/208 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLAE QP SF F+ E+ W+ + I++YP R SAV+P L +AQ+Q W+ +
Sbjct: 1 MSVRRLAE--NQPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQK 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA L M IRVLE+ATFYT F L PVG +Q+CGTTPCML G + LI+V +
Sbjct: 59 AIEKVAETLGMPKIRVLEVATFYTMFNLEPVGKYY-IQLCGTTPCMLCGSDDLIKVLERR 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ +DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+
Sbjct: 118 VGP-QRKVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKK 207
++ G Q R+SS P GGLTSL +K
Sbjct: 175 VKTGSQKGRVSSEPEGGLTSLTSLYGQK 202
>gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris
DX-1]
gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
DX-1]
Length = 249
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 122/223 (54%), Positives = 152/223 (68%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ G W+ A
Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+
Sbjct: 61 AIRAVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H ++DG SWEEVEC GACVNAPMV I KD YEDLTPE L +++D F++G
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGH--P 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLD-----NNSKKRGKKKKDDKI 217
+PGPQ R +AP G T+L G DD+
Sbjct: 179 PQPGPQNGRQHAAPITGPTTLKTGGINVAPIDANGPALTDDEA 221
>gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Silicibacter sp. TrichCH4B]
gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
[Silicibacter sp. TrichCH4B]
Length = 410
Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats.
Identities = 109/206 (52%), Positives = 140/206 (67%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGWV++ A+E
Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LI VC++KI
Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMICGAEDLIAVCKDKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ID + G+ + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGK--AVVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GLTSL D + K
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDYEADKP 203
>gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum]
gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium
castaneum]
Length = 243
Score = 234 bits (596), Expect = 7e-60, Method: Composition-based stats.
Identities = 78/212 (36%), Positives = 118/212 (55%), Gaps = 4/212 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R E+ F F+ E+ + +++ YP ++A+IPLL AQ Q GW+ +A+
Sbjct: 35 HRDTPEDNPDIPFDFTPENKKRADAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHK 94
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG +++++ + + +
Sbjct: 95 VAEILNLPRMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTIKCNLKLE 153
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+SDG + EVEC GACVNAPM+ + D YEDLT + EEI++ + +PG
Sbjct: 154 VGETSSDGMFTLSEVECLGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNK--KPKPG 211
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
P+ R ++ P G T L G + D
Sbjct: 212 PRNGRFAAEPIGEPTCLAGEPPG-PGFGVRSD 242
>gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583]
gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis
KC583]
Length = 225
Score = 234 bits (596), Expect = 7e-60, Method: Composition-based stats.
Identities = 139/206 (67%), Positives = 163/206 (79%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1 MSVRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A +L MAYIRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG +LI++C+ KI
Sbjct: 61 IEHIAQMLSMAYIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSTELIKICQKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF +G +
Sbjct: 121 HPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEANKGFEV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
GPQ R SS P GLTSL++ +
Sbjct: 181 AVGPQNSRKSSEPINGLTSLINEDED 206
>gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818]
Length = 251
Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats.
Identities = 85/216 (39%), Positives = 124/216 (57%), Gaps = 4/216 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R +EE + F F++ + V +I ++PP+ +A IP+L AQ Q GW+ A+
Sbjct: 39 VHRDSEENNDETPFKFTDSNMKRVEAIIGQFPPNHRSAACIPVLDLAQRQNNGWLPLNAM 98
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA IL M +RV E+ATFYT F PVG + H+QVC TTPCM+RG K+ + + K+
Sbjct: 99 NEVAKILRMPKMRVYEVATFYTMFNREPVG-KYHIQVCTTTPCMVRGAYKVFDHLKAKLG 157
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+ + D + EVEC GAC NAPM+ I + YEDLT E ++ I+D G+ T +
Sbjct: 158 LENGETSDDKLFTLLEVECLGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGK--TPK 215
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGPQ R ++ P G T+LL+ +KD ++
Sbjct: 216 PGPQSGRNAAEPLSGQTTLLETPPPPDHLFRKDGQL 251
>gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
[Rhodobacterales bacterium Y4I]
gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
[Rhodobacterales bacterium Y4I]
Length = 389
Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGWV++ AIE
Sbjct: 2 LRRLHHE--QPDSFAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A++L MAYIRVLE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VCR KI
Sbjct: 60 AIADMLGMAYIRVLEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCREKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--LVAP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGK 202
>gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
Length = 396
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 117/207 (56%), Positives = 141/207 (68%), Gaps = 4/207 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL +E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHKE--QPESFAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +LDM +IR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VCR KI
Sbjct: 60 HVAQMLDMDFIRGLEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEDLIGVCREKISP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG LSWEEVEC GAC NAPM IGKD YEDLT ER +++D G+ P
Sbjct: 120 NPHELSADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGK--VPAP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
GPQ R +S P GLTSLL ++ +
Sbjct: 178 GPQNGRYASEPVSGLTSLLAHDKGRMA 204
>gi|197105263|ref|YP_002130640.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
Length = 220
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/217 (50%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRL+ QP SF+FS E+ ++ +PP + QSAV+P+L Q+QEGWVS A
Sbjct: 1 MSVRRLSP--VQPESFAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I VA +L M IRVLE+ATFYT F L PVGT A VQVCGTTPC RG E L+EVC+ +I
Sbjct: 59 IRAVAELLGMPVIRVLEVATFYTMFMLEPVGTHALVQVCGTTPCQSRGAEALMEVCKRRI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ ++DG W+EVEC GAC NAPM I YEDLTPE E+++D F+ G+ T
Sbjct: 119 GPQSHR-SADGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGK--TP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PG I R SAP GG +L D G K KI
Sbjct: 176 PPGSAIGRQCSAPEGGPMTLTDPK-LYDGSLAKKIKI 211
>gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Octadecabacter antarcticus 307]
gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
[Octadecabacter antarcticus 307]
Length = 277
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 108/205 (52%), Positives = 145/205 (70%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60 GVADMLGLAFMRALEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG SWEEVEC G+C NAPM IGKD YEDLT R+ E+IDA + G+ P
Sbjct: 120 NPHEVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALARGE--VPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLT+L D + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYEAGK 202
>gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
Length = 290
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 118/205 (57%), Positives = 147/205 (71%), Gaps = 3/205 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA E QP +F+F++E+ W + I++YP R SAVIPLLMRAQEQ G WVS
Sbjct: 1 MSVRRLAPREVQPENFAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEP 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A+ V ++L MA IRV EIATFYTQFQL+PVG +AH+QVCGTTPCMLRG +L++VC+++
Sbjct: 61 AMRYVGDMLGMAPIRVYEIATFYTQFQLNPVGKKAHIQVCGTTPCMLRGAGELMDVCKHR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH++ H + +G SWEEVEC G CVNAPM+ + KD YEDLTP LE I+DAF +G+
Sbjct: 121 IHEEQFHLSENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFE--RGEK 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNN 204
GPQI R SS P GL L
Sbjct: 179 PDAGPQIARHSSEPVTGLRVLTSPE 203
>gi|163738801|ref|ZP_02146215.1| ATP synthase subunit E [Phaeobacter gallaeciensis BS107]
gi|161388129|gb|EDQ12484.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis
BS107]
Length = 397
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI
Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSIAHVQICGTTSCMICGAEDLIAVCQDKIAN 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P
Sbjct: 120 QPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQ--VPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202
>gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
gi|266652|sp|P29914|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName:
Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1,
chain 2
gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans]
gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
Length = 239
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 109/206 (52%), Positives = 137/206 (66%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL+ QP SF F+ + W +++YP R QSA+IP+L RAQEQEGW+SR AIE
Sbjct: 2 LRRLSP--IQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
A++L M YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E LI VC+ KI
Sbjct: 60 YCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDLT E+L +ID F+ G+ P
Sbjct: 120 EPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGE--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R S+ GG T+L D +
Sbjct: 178 GPQNGRFSAEALGGPTALADLKGGEA 203
>gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
Length = 379
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL +E QP+SF+F+ + W ++++P R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHKE--QPASFAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LIEVC+ +I
Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEALIEVCQQEIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K + + DG SWEEVEC GAC NAPMV IGKD YEDLTPE+L EI+ + G+ P
Sbjct: 120 KAHNLSDDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGR--VPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
GPQ R ++ P GLTSL + S K+
Sbjct: 178 GPQNGRYAAEPLSGLTSLKEFESGKKA 204
>gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
gi|238663550|emb|CAZ34426.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Schistosoma
mansoni]
Length = 248
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 90/218 (41%), Positives = 122/218 (55%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F FS E+ ++ +IS YPP+ +A+IP L AQ Q GW+ +A+
Sbjct: 34 VHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + +
Sbjct: 94 KVAEILNVPQMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEVILNALKKNL 152
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P D + EVEC GACVNAPM+ I D YEDLT E I++ G+
Sbjct: 153 GIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEEIKAGK--KP 210
Query: 181 RPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S P GGLTSL + K G K + D
Sbjct: 211 KPGPQSGQGGRFASEPKGGLTSL-NTEPKSPGFKVRSD 247
>gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1]
Length = 262
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 4/216 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R E+ +F F+ E+ V + +++PP +A IP+L AQ Q G W+ +A+
Sbjct: 50 VHRDTEKNNSSIAFEFTPENMKKVEAITAQFPPGHRAAACIPVLDLAQRQYGGWLPISAM 109
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+ VA +L M IRV E+A+FYT F PVG + HVQVC TTPCM+RG + E + K+
Sbjct: 110 DEVARVLQMPKIRVYEVASFYTMFNRDPVG-KYHVQVCTTTPCMVRGAYNIFEHLQKKLG 168
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+ DG + EVEC GAC NAPM+ I + YEDL ++ II+A +G+T +
Sbjct: 169 LHNGETSEDGMFTLLEVECLGACSNAPMIQINDEYYEDLELADVDRIIEALR--KGETPK 226
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGPQ R ++ P GGLT+L K + D K+
Sbjct: 227 PGPQNGRKAAEPLGGLTALTSEPVDGAHKFRTDGKL 262
>gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
Length = 395
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 144/220 (65%), Positives = 163/220 (74%), Gaps = 2/220 (0%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAEE QP+ F+F+ E A I +YP R QSAVIPLLM AQEQ+GWV++ A
Sbjct: 1 MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++L M YIR LE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E+L+EVCR+KI
Sbjct: 61 IETIADMLGMPYIRALEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEELMEVCRSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H +P H N GTLSWEEVECQGACVNAPMVMI KD YEDLTPERL IID F G+ + I
Sbjct: 121 HPEPFHLNESGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLAYIIDRFDAGRPEDI 180
Query: 181 RPGPQIDRISSAPAGGLTSLLD--NNSKKRGKKKKDDKIS 218
GPQI R SAPA GLTSL + KR K K S
Sbjct: 181 NTGPQIKRTFSAPASGLTSLTEEIKPGSKRAAKSTKAKAS 220
>gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
ATCC 15264]
gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
ATCC 15264]
Length = 222
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 115/215 (53%), Positives = 150/215 (69%), Gaps = 6/215 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA++ QP+SF+FS+E+ V+ I++YP R +SAVIP+L Q+QEGWVS A
Sbjct: 1 MSVRRLAKD--QPASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A+ LDMAYIRVLE+ATFYT F L PVG+ A +QVCGTTPCMLRG +L++VC+++I
Sbjct: 59 IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSGELMKVCKSRI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+K ++DG WEEVEC GACVNAPM MI +EDLT L +IID F+ G+
Sbjct: 119 GEKQ-TLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDDFAAGK--AP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PG +IDR++SAP GG +L D G K
Sbjct: 176 KPGTRIDRVNSAPEGGPLTLTD-PGLYDGTAAKPI 209
>gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni]
gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni]
Length = 242
Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ILD+ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVAEILDLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV + D YEDLT + +++I+ + P
Sbjct: 152 GVGDTTKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILSDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S PAG TSL + K G +
Sbjct: 210 GPRNGRFASEPAGNATSLTE-EPKGPGFGLQAG 241
>gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit
precursor [Glossina morsitans morsitans]
Length = 242
Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V+ ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPDVPFEFTAENQKRVDAILSIYPEGHKRGALIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++ C+ +
Sbjct: 93 KVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILATCKKTLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPM+ I D YEDLT + +EEI+ + R
Sbjct: 152 GVGETTKDMKFTISEVECLGACVNAPMIAINDDYYEDLTSKDMEEILADCKAER--VPRA 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 210 GPRNGRFASEPKGNPTSLTE-EPKGPGFGLQPG 241
>gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234]
gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234]
Length = 276
Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 150/223 (67%), Positives = 174/223 (78%), Gaps = 6/223 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE+ QP++F+FS+E+A W I++YP R QSA+IPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++L MAYIR LE+ATFYTQFQL PVG+RAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61 IESIADMLGMAYIRALEVATFYTQFQLKPVGSRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
P N GTLSWEEVECQGACVNAPMVMI KD+YEDLTPERLEEIID F G+G I
Sbjct: 121 AADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFDAGKGAEI 180
Query: 181 RPGPQIDRISSAPAGGLTSL------LDNNSKKRGKKKKDDKI 217
PGPQIDRI SAPAGGLT+L + R K KD++
Sbjct: 181 EPGPQIDRIYSAPAGGLTTLQLVEAPQRTKAPARASKAKDEQA 223
>gi|221127644|ref|XP_002160547.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial [Hydra magnipapillata]
Length = 243
Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+EE+ + +IS YP +A IPLL Q Q GWV + +
Sbjct: 34 VHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPLSGMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L M +RV E+ATFYT F PVG + H+Q+C TTPCML + ++ V + K+
Sbjct: 94 YVAKMLQMPEMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLCNSDSIMSVIKEKLQI 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P D + EVEC GACVNAPMV I + YEDL P + EII++ + +G +P
Sbjct: 153 NPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESLA--KGIIPKP 210
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S PAGGLTSL + G K +
Sbjct: 211 GPRSGRFASEPAGGLTSLTS-PPRGPGFKLQSG 242
>gi|119113027|ref|XP_308018.3| AGAP002170-PA [Anopheles gambiae str. PEST]
gi|116132852|gb|EAA03768.3| AGAP002170-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R E+ F F+ ++ +++ YP + A+IPLL AQ Q GW+
Sbjct: 16 MSDNLFVHRDTPEDNASIPFEFTADNQKRAEAILNIYPEGHKRGAMIPLLDLAQRQHGWL 75
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+A+ VA+IL + ++RV E+ATFYT F P G + H+QVC TTPC LRG +++++VC
Sbjct: 76 PLSAMHKVADILGLPHMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEVLDVC 134
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ + DG + EVEC GACVNAPM+ + D YEDL+ EEI+++ GQ
Sbjct: 135 KKNLGIGVGETTKDGKFTISEVECLGACVNAPMLAVNDDYYEDLSVADTEEILNSLKQGQ 194
Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
RPGP+ R +S P G LTSL + K G +
Sbjct: 195 Q--PRPGPRNGRYASEPVGQLTSLTE-EPKGPGFGLQAG 230
>gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
Length = 248
Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 121/218 (55%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A+
Sbjct: 34 VHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + +
Sbjct: 94 KVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKKTL 152
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P D + EVEC GACVNAPM+ I D YEDLT E II G+
Sbjct: 153 GIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK--KP 210
Query: 181 RPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S P GGLTSL + K G K + D
Sbjct: 211 KPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247
>gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial precursor (NADH-ubiquinone
oxidoreductase 24 kDa subunit) (NADH dehydrogenase
subunit II) [Ciona intestinalis]
Length = 242
Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats.
Identities = 78/212 (36%), Positives = 117/212 (55%), Gaps = 4/212 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
E + F F++++ + + + YP +AV+P+L AQ Q GW+ +A+
Sbjct: 34 HVDTPENNANTPFDFTKKNYERIEAIKANYPEGHKVAAVMPILDLAQRQHGWLPISAMNK 93
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA +LD+ +RV E+ATFYT + + H+Q+C TTPCML G + ++EV + K+ K
Sbjct: 94 VAELLDVPPMRVYEVATFYTMYNR-NPIGKYHLQLCTTTPCMLCGSDGILEVIQKKLGIK 152
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
DG + E EC GACVNAPM+ I YEDL P +EEI+D + G+ +PG
Sbjct: 153 VGETTKDGLFTLMEAECLGACVNAPMIQINDMYYEDLKPSDMEEILDDLTNGR--EPKPG 210
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
P+ +R + P GGLTSL + G + D
Sbjct: 211 PRSERFACEPLGGLTSLTE-PPTGPGFGIRTD 241
>gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
[Rhodobacterales bacterium HTCC2083]
gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
[Rhodobacteraceae bacterium HTCC2083]
Length = 384
Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats.
Identities = 110/216 (50%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL ++ QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHKD--QPDSFAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
V+++L +AYIR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E L+ VCR KI
Sbjct: 60 HVSDMLGLAYIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCREKISN 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +++D + G P
Sbjct: 120 KPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAG--SVPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
GPQ R S P GL+SL D +S K S
Sbjct: 178 GPQNGRYSCEPLSGLSSLKDYDSGKTQYNASAQLAS 213
>gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
BisA53]
Length = 249
Score = 231 bits (588), Expect = 6e-59, Method: Composition-based stats.
Identities = 123/213 (57%), Positives = 152/213 (71%), Gaps = 3/213 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
M+VRRLA +E QP SF+F++E+ W ++ +++YPP R SAVI ++ RAQEQ GW+S A
Sbjct: 1 MAVRRLAPKELQPESFAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++LDM +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 61 AIRAVADLLDMPHIRALEIATFYTMFQLHPVGRKAHVQVCGTTPCRLRGAEDIIKVCQNR 120
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH P H ++DG SWEEVEC GACVNAPMVMIGKDTYEDLTPE +++D G G
Sbjct: 121 IHHDPSHLSADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGI--GSGHP 178
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGPQ R +AP GG L D K
Sbjct: 179 PKPGPQGGRQFAAPEGGPRVLKDGGGPSASHGK 211
>gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
Length = 248
Score = 231 bits (588), Expect = 6e-59, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 121/218 (55%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A+
Sbjct: 34 VHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + +
Sbjct: 94 KVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKKTL 152
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P D + EVEC GACVNAPM+ I D YEDLT E II G+
Sbjct: 153 GIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK--KP 210
Query: 181 RPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S P GGLTSL + K G K + D
Sbjct: 211 KPGPQNGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247
>gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis]
gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis]
Length = 242
Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F FS E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFSAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + ++EI++ + P
Sbjct: 152 GVGETTKDKKFTISEVECLGACVNAPMVSINDDYYEDLTGKDMQEILNDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL+++ K G +
Sbjct: 210 GPRNGRFASEPKGEPTSLIEDP-KGPGFGLQAG 241
>gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
BL2]
gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
BL2]
Length = 264
Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats.
Identities = 110/221 (49%), Positives = 141/221 (63%), Gaps = 9/221 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
M+VRRLAE QP SF+FS E+ WV+ +I++YP R SAVI LL RAQ+Q G W+ R
Sbjct: 1 MTVRRLAE--VQPDSFAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA L M YIRVLEIATFY+ F LSPVG VQ+CGTTPC+L G + + V +N+
Sbjct: 59 AIEAVAEKLGMPYIRVLEIATFYSMFNLSPVGE-HFVQLCGTTPCLLAGSDGIKSVLKNR 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I +P +DG SW EVEC GAC NAPMV I D +EDLTP+ +++D + G+
Sbjct: 118 IG-EPGVVTADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS--KKRGKKKKDDKIS 218
+ G Q R+SS PAGGLT+L+ + G + S
Sbjct: 175 VTAGSQTGRVSSEPAGGLTALVSFYGVNGRSGPYCAKEAPS 215
>gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 388
Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats.
Identities = 120/217 (55%), Positives = 152/217 (70%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
M+VRR+ + QP+ F+FS E+ W E I++YP + SA+IPLL RAQEQ G W+
Sbjct: 1 MAVRRVNPD--QPAEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI V ++L MA+IR +E+ATFYT FQLSPVGT+AHVQVCGTTPCMLRG LI VC+++
Sbjct: 59 AIRAVCDLLGMAHIRGMEVATFYTMFQLSPVGTKAHVQVCGTTPCMLRGSRDLISVCQHR 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH+ P NSDGTLSWEEVEC G C NAP+V IGKDTYEDLT E+ E+++D F G+
Sbjct: 119 IHEHPHTPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGK--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKKK 213
++PG Q R +S PAGG TSL D + +K
Sbjct: 177 LKPGSQTGRTASCPAGGPTSLTDQSLYDGSTIDAWRK 213
>gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
Length = 248
Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 121/218 (55%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A+
Sbjct: 34 VHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + +
Sbjct: 94 KVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKKTL 152
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P D + EVEC GACVNAPM+ I D YEDLT E II G+
Sbjct: 153 GIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK--KP 210
Query: 181 RPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S P GGLTSL + K G K + D
Sbjct: 211 KPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247
>gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
Length = 209
Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats.
Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 4/212 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R +++ F F+E+S ++I+ YP +A+IPLL AQ Q GW+ A+
Sbjct: 1 HRDSKDNNLDIPFEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNY 60
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA+ L ++ +R+ E+ATFYT F P+G + H+Q+C TTPCMLR + ++ V ++K+ +
Sbjct: 61 VADYLSVSRMRIYEVATFYTMFNRYPMG-KYHIQICTTTPCMLRDSDSILNVIKSKLGIE 119
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
DG + EVEC GACVNAPMV I D YEDLT +EEI+D+ G G
Sbjct: 120 IGQTTKDGLFTLSEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAG--SKPTAG 177
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
P+ R + P GLTSL + G +DD
Sbjct: 178 PRSGRKCAEPITGLTSL-SSPPTGPGFGVRDD 208
>gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Maritimibacter alkaliphilus HTCC2654]
gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Rhodobacterales bacterium HTCC2654]
Length = 423
Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats.
Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP+SF+F+ ++ W +++YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHHE--QPASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI
Sbjct: 60 GVADMLGMEYIRALEVATFYFMFQLQPVGSVAHFQICGTTSCMIMGAEDLIAVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++ID G G+ P
Sbjct: 120 NPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLID--RMGAGEVPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R +S PAGGLTSL D+ + K
Sbjct: 178 GPQNGRYASEPAGGLTSLKDHEANK 202
>gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia
pulex]
Length = 243
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 83/214 (38%), Positives = 117/214 (54%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R + F+F++E+ N +I+ YP ++AVIPLL AQ Q G W+ +A+
Sbjct: 33 VHRDTPKNNPDVPFAFTKENVERANAIINIYPDGHKRAAVIPLLDLAQRQAGGWLPISAM 92
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA++L M +RV E+ATFYT F + VQVC TTPC L G EK++ + K++
Sbjct: 93 HAVADMLSMPKMRVYEVATFYTMFNR-NPIGKHFVQVCTTTPCWLNGSEKIMNCLKKKLN 151
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+G S EVEC GACVNAPM+ I + +EDLT + EEIID G+ +
Sbjct: 152 LNNGETTPNGEFSLLEVECLGACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGR--EPK 209
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P GLTSL + G K +
Sbjct: 210 AGPRNGRFAAEPRDGLTSLTEPPPG-PGFKIQPG 242
>gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
238]
gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
238]
Length = 354
Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 106/205 (51%), Positives = 145/205 (70%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60 SVADMLGLAFMRALEVASFYFMFQLKPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ ++IDA + G+ P
Sbjct: 120 NPHDVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALARGE--VPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLT+L D + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYAADK 202
>gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
nubinhibens ISM]
gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
nubinhibens ISM]
Length = 437
Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 112/205 (54%), Positives = 140/205 (68%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL ++ QP SF+FS + W I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLYKD--QPESFAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+A+FY FQ+ PVG+ AH Q+CGTT CM+ G E L+ VCR K+
Sbjct: 60 HVADMLGMAYIRALEVASFYFMFQMQPVGSVAHFQICGTTSCMICGAEDLVAVCREKVAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P + DG SWEEVEC GAC NAPM IGKD YEDLT ER EIID + G+ T P
Sbjct: 120 NPHELSPDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGK--TPLP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGR 202
>gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2]
gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2]
Length = 366
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 113/205 (55%), Positives = 144/205 (70%), Gaps = 4/205 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP +F+F+ ++ W + ++P R SA+IP+L RAQEQEGW+SRAAIE
Sbjct: 2 LRRLYHD--QPETFAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +LD+AYIR LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI
Sbjct: 60 HVAAMLDLAYIRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKITD 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EIID + G+ P
Sbjct: 120 KPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGR--VPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
GPQ R ++ P GLTSL D++S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLKDHDSGK 202
>gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi]
gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi]
Length = 242
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F FS E+ V+ ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVADILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILEQCKKQLAI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + +++I+ + P
Sbjct: 152 GVGETTKDNKFTISEVECLGACVNAPMVSINDDYYEDLTAKDMQDILSDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 210 GPRNGRFASEPKGNPTSLSE-EPKGPGFGLQAG 241
>gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium
dendrobatidis JAM81]
Length = 257
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F+ E+I++YP + A +PLL AQ Q GWVS +++
Sbjct: 48 VHRNTKVNNPDIPFEFTPAEMKRAQEIIAKYPAQYKKGATMPLLDLAQRQLGWVSISSMN 107
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A +L+M +RV E+ATFYT + PVG + +QVC TTPC L G + +++ +
Sbjct: 108 YIAKLLEMPPMRVYEVATFYTMYNRDPVG-KYFLQVCTTTPCQLCGSDAIVKAAEETLGI 166
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K SD + EVEC GACVNAP++ + D YEDLT + + ++++ +G +P
Sbjct: 167 KLGETTSDNMFTLVEVECAGACVNAPVMAVNDDYYEDLTVDATKSLLESIK--KGTVPKP 224
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP R++ P GLTSL + G + D
Sbjct: 225 GPVSGRMNCEPRAGLTSLTTKPTG-PGFGVRAD 256
>gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB
1003]
gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus]
gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter
capsulatus]
gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus]
gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB
1003]
Length = 389
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 109/208 (52%), Positives = 137/208 (65%), Gaps = 4/208 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLH--ATQPDSFAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++LDM YIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LIEVC+ KI
Sbjct: 60 YVADLLDMPYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMIMGSENLIEVCKRKISH 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG SWEEVEC GAC NAPM IGKD +EDLT LE +ID + G+ P
Sbjct: 120 HPHALSADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGK--APVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGK 210
G +I R + PA GLTS + + +
Sbjct: 178 GSEIGRFGAEPATGLTSCTTTSGAREAQ 205
>gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC
21756]
gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC
21756]
Length = 229
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP+SF+FS+ES + ++YP +R QSAVIP+L AQ+QEGW+S A
Sbjct: 1 MSVRRLAKE--QPASFTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V ++KI
Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKDKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ +
Sbjct: 119 G-EANHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+PG R++S P G + +L D G K KI
Sbjct: 176 KPGSYDGRVASEPKGKIQTLTDPK-LYDGSAAKKIKI 211
>gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
Length = 395
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/206 (53%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL E QP SF+F+ ++ W I++YP R SA+IPLL RAQEQEGW++R AIE
Sbjct: 2 LRRLHPE--QPDSFAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L +A+IR LE+ATFY FQL PVG AH+Q+CGT CM+ G E L+ V R KI
Sbjct: 60 GVADMLGLAHIRALEVATFYFMFQLQPVGAVAHIQICGTLSCMICGAEDLVAVAREKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++DG SWEEVEC GAC NAPM IGKD YEDLT E IIDA + +G+ P
Sbjct: 120 NPHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMA--RGEVPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ +R +S PAGGLTSL ++ + +
Sbjct: 178 GPQTERYASEPAGGLTSLTEHAAGRD 203
>gi|17561328|ref|NP_506376.1| hypothetical protein F53F4.10 [Caenorhabditis elegans]
gi|6647669|sp|Q20719|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial; Flags: Precursor
gi|3877525|emb|CAB01203.1| C. elegans protein F53F4.10, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 239
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 83/212 (39%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A+
Sbjct: 29 VHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHGWLPISAMH 88
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+
Sbjct: 89 EVAKILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKLGI 147
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+
Sbjct: 148 HAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGR--KPAA 205
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
GP+ R+++ P G LTSL + G +
Sbjct: 206 GPRSGRLAAEPFGELTSLKETPPG-PGFGLQA 236
>gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans
ORS 2060]
gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans
ORS 2060]
Length = 385
Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP SF+F+ E+A W + I++YP R SAVIPLL RAQEQ GW+ +
Sbjct: 1 MANRRLAPTAEQPESFAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G + L + +
Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKDLKRMLEER 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ H + DGT SW EVEC GAC NAPMV I D YEDLTPE L +++D + G+
Sbjct: 120 LGP-SGHVSPDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G QI R SS P G +T+L D + + G +K
Sbjct: 177 VKTGSQIGRTSSEPLGAVTTLTDETLFDGSRIGAWRK 213
>gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
OB3b]
gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
OB3b]
Length = 208
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 110/216 (50%), Positives = 135/216 (62%), Gaps = 9/216 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS RRLAEE QPSSF F+ E+ W+ I++YP R S V+P L +AQ+Q W+ +
Sbjct: 1 MSTRRLAEE--QPSSFEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQK 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA L M YIRVLEIATFYT F L PVG VQ+CGTTPCML G + LI V +
Sbjct: 59 AIEKVAQTLGMPYIRVLEIATFYTMFNLEPVGKFY-VQLCGTTPCMLSGSDDLIAVLERR 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ H ++DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+
Sbjct: 118 VGP-QRHVSADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
++ G Q RISS PAGGLTSL G K + +
Sbjct: 175 VKTGSQTGRISSEPAGGLTSLTSL--YGDGAKAQAE 208
>gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
Length = 269
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R + F F+EE+A E+IS YP ++AVIPLL Q Q GWVS + +
Sbjct: 56 VHRNTDYNNPDIPFEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLGQRQNSGWVSISVM 115
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +L+M +RV E+ATFYT F PVG + +Q+C TTPCML G K++E +K
Sbjct: 116 NYVAKLLEMPPMRVYEVATFYTMFNREPVG-KYFLQLCTTTPCMLGGCGSTKILEALESK 174
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ K D + EVEC GAC NAPM+ I D +EDLTPE + IID S G+
Sbjct: 175 LGIKAGQTTKDNKFTLVEVECLGACANAPMIQINDDFFEDLTPESMNNIIDKLSNGE--K 232
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
++PGPQ R SS PA G T+L GK
Sbjct: 233 VKPGPQSGRHSSEPANGRTALTS-EPYGPGKFC 264
>gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae]
gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae]
Length = 242
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTPENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVAEILELPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQLSI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV + D YEDLT + ++ I+ + P
Sbjct: 152 GVGETTKDKKFTISEVECLGACVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL++ K G +
Sbjct: 210 GPRNGRFASEPKGEPTSLIE-EPKGPGFGLQPG 241
>gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3]
Length = 195
Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats.
Identities = 146/195 (74%), Positives = 171/195 (87%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180
Query: 181 RPGPQIDRISSAPAG 195
+PG QIDRI SAP G
Sbjct: 181 KPGTQIDRIFSAPEG 195
>gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae]
gi|187030243|emb|CAP30450.1| hypothetical protein CBG_11518 [Caenorhabditis briggsae AF16]
Length = 239
Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats.
Identities = 83/212 (39%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E F F+ E+ + + + YP A+IPLL AQ Q GW+ +A+
Sbjct: 29 VHRDTKENNLNVKFKFTPENEDRIKAICAIYPEGHKAGALIPLLDLAQRQHGWLPISAMH 88
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+
Sbjct: 89 EVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKLGI 147
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+
Sbjct: 148 HAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVHEILDDLKAGR--KPAA 205
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
GP+ R+++ P G LTSL + G +
Sbjct: 206 GPRSGRLAAEPFGELTSLKETPPG-PGFGLQA 236
>gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
HTCC1062]
Length = 202
Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats.
Identities = 93/207 (44%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q W+ A
Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K
Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T
Sbjct: 118 ISENENELSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
+PG R+++ P +LLD +
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLDLKNA 202
>gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
Length = 215
Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats.
Identities = 91/201 (45%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS +P+SF+F+ ++ +I++YP + SA +PLL AQ Q G W+ R
Sbjct: 1 MSAPASDHGHAEPTSFTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRV 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ VA++L M IRV E+ATFYT + +PVG R H+QVC TTPC LRG + ++ C+ K
Sbjct: 61 AMDAVADLLGMPRIRVYEVATFYTMYNKNPVG-RHHIQVCTTTPCWLRGSDDVVHACKRK 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ +DG + EVEC GACVNAP+V IG D YED+ PE +E I+DA + G+ T
Sbjct: 120 LGIGMGETTADGQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALARGE--T 177
Query: 180 IRPGPQIDRISSAPAGGLTSL 200
+PG QI R SS P GG T+L
Sbjct: 178 PKPGSQIGRQSSEPVGGPTTL 198
>gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
stipitis CBS 6054]
gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
stipitis CBS 6054]
Length = 239
Score = 228 bits (580), Expect = 5e-58, Method: Composition-based stats.
Identities = 81/215 (37%), Positives = 121/215 (56%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R ++ + Q +F F+ E+ +E+I++YPP + AV+PLL Q Q G+ S +
Sbjct: 27 ISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 86
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ ++ +
Sbjct: 87 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDGVMKAIQDHL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ + D YEDLTPE +I+ F G+
Sbjct: 146 KVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPEATVDILKQFQAGK--EP 203
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GP R S P G LL K + D
Sbjct: 204 KIGPISGRESCEPHSGAKVLLGAEPTDLRKFTRAD 238
>gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767]
gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii]
Length = 238
Score = 228 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+S+ R +E+ + SF F+ E+ NE+I++YPP ++AV+PLL Q Q G+ S A
Sbjct: 26 ISIHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAV 85
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + +
Sbjct: 86 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDEVMDAITSHL 144
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ + D +EDLT E+ +++ G+
Sbjct: 145 KIKPGQTTPDKLFTLQEVECLGACVNAPMLALNDDFHEDLTAEKTIDLLKTLQAGK--EP 202
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GP R + P G LL + D
Sbjct: 203 KAGPVSGRDTCEPFSGAKVLLGEKPFDVSTVTRSD 237
>gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
Length = 394
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 103/217 (47%), Positives = 136/217 (62%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA E QP++F+F+ E+A W I++YP R SAVIPLL RAQEQ GW+ +
Sbjct: 1 MANRRLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G ++L ++
Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKELKHYLHDR 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ H + DG SW EVEC GAC NAPMV I +D YEDLTPE L ++D + G+
Sbjct: 120 LGP-AGHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G Q R SS P G T+L D + + G ++
Sbjct: 177 VKAGSQAGRTSSEPKGAATTLTDETLFDGSRIGAWRR 213
>gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
DM4]
gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
[Methylobacterium extorquens DM4]
Length = 412
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ GW+ +
Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L +
Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+
Sbjct: 120 LGP-SGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G QI R+SS P + +L D + + G +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213
>gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
PA1]
gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
chloromethanicum CM4]
gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
PA1]
gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
chloromethanicum CM4]
Length = 412
Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ GW+ +
Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L +
Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+
Sbjct: 120 LGP-SGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G QI R+SS P + +L D + + G +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213
>gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
BisB18]
Length = 265
Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats.
Identities = 118/207 (57%), Positives = 148/207 (71%), Gaps = 3/207 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
M+VRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RA EQ GW++ A
Sbjct: 15 MAVRRLAPKELQPESFAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEA 74
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L M +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 75 AIRAVADLLQMPHIRALEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEDIIKVCKNR 134
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
IH +P H ++DG SWEEVEC G+CVNAPMVMI KDTYEDLTPE +++D F++G
Sbjct: 135 IHHEPFHLSADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASGNF-- 192
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
PGPQ R +AP GG L +
Sbjct: 193 PTPGPQNGRQFAAPEGGPRVLKSVGAP 219
>gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 457
Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats.
Identities = 106/217 (48%), Positives = 134/217 (61%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP SF+FS E+A W I++YP R SAVI LL RAQEQ GW+ RA
Sbjct: 1 MANRRLAPASEQPESFAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA L M IRVLE+ATFYT F L PVG R +QVCGT PC G L E+ + +
Sbjct: 61 AIEAVAAELGMPNIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDSCGARGLKEMLQAR 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+
Sbjct: 120 LGP-AGHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G Q R+SS P G + +L D + + G +K
Sbjct: 177 VKVGSQTGRVSSEPQGAVNTLTDPTLFDGSRVGAWRK 213
>gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
sp. 217]
gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
sp. 217]
Length = 398
Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats.
Identities = 114/206 (55%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLYHK--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI
Sbjct: 60 HVADLLRMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCQEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P
Sbjct: 120 KAFELSTDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GLTSL + S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLKEFESGRA 203
>gi|240137578|ref|YP_002962049.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
[Methylobacterium extorquens AM1]
gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
[Methylobacterium extorquens AM1]
Length = 412
Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ GW+ +
Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L +
Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+
Sbjct: 120 LGP-SGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G QI R+SS P + +L D + + G +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213
>gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
BJ001]
gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
BJ001]
Length = 412
Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 8/217 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ GW+ +
Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA+ L M +IRVLE+ATFYT F L PVG R +Q+CGT PC G ++L ++
Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RFWIQICGTVPCDCCGAKELKAALHDR 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+
Sbjct: 120 LGP-SGHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
++ G QI RISS P + +L D + + G +K
Sbjct: 177 VKVGSQIGRISSEPKDAVNTLTDPSLFDGSRVGAWRK 213
>gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
Length = 396
Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 115/206 (55%), Positives = 137/206 (66%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLYH--QQPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC++KI
Sbjct: 60 HVADMLAMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCKDKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P
Sbjct: 120 KAFDLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGK--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GLTSL D +S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDFDSGRA 203
>gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
Length = 303
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 113/203 (55%), Positives = 140/203 (68%), Gaps = 4/203 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI
Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +ID FS G+ RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSAGE--VPRP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
GPQ R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGP 200
>gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba]
gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba]
Length = 242
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 93 KVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + +++I++ + P
Sbjct: 152 GVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 210 GPRNGRFASEPKGEPTSLSE-EPKGPGFGLQAG 241
>gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
HTCC1002]
Length = 202
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q W+ A
Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K
Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + +++ + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T
Sbjct: 118 ISENENELSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
+PG R+++ P +LLD +
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLDLKNA 202
>gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 2/215 (0%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R +E+ Q F F+ E+ E+I++YPP + A +PLL Q Q G+ S +
Sbjct: 24 ISVHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISV 83
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + +
Sbjct: 84 MNYVAKMLDMPPMRVYEVATFYTMYMRHPMG-KYNIQVCTTTPCQLCGSDEIMKAVTDFL 142
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ +G D +EDLTPE+ E++ G+
Sbjct: 143 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVGDDYHEDLTPEKTVELLQKLKDGK-PVE 201
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GP R S P G L K + D
Sbjct: 202 KAGPVSGRHSCEPLSGRKVLKAAEPTDIRKFTRAD 236
>gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans
DS-1]
gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum
lavamentivorans DS-1]
Length = 208
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/203 (51%), Positives = 136/203 (66%), Gaps = 7/203 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MSVRRL + QP+SF+F+ E+ W + I++YP + SA+IPLL RAQEQ GW+
Sbjct: 1 MSVRRL--DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA++L M YIR +E+ATFYT F LSPVG VQ+CGTTPC LRG ++L EVCR
Sbjct: 59 AIRHVADMLGMEYIRAIEVATFYTMFNLSPVGEHY-VQLCGTTPCWLRGADELKEVCRKH 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + ++DG SW EVEC GACVNAPMV I D +EDL E ++ +G+
Sbjct: 118 IGPE-GTVSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGKD-- 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
++PGPQ +R +S PAGGLTSL +
Sbjct: 175 VKPGPQNERHASEPAGGLTSLTN 197
>gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15]
gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000]
gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15]
gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000]
Length = 228
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP+SF+FS++S + ++YP R QSAVIP+L AQ+QEGW+S A
Sbjct: 1 MSVRRLAKE--QPASFAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L +V +KI
Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLRKVLEDKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+
Sbjct: 119 GP-AHHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGK--AP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+PG R +S P G + +L D G K KI
Sbjct: 176 KPGSYEGRGASEPKGAIHTLTDPK-LYDGSYAKKIKI 211
>gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31]
gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31]
Length = 228
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 111/217 (51%), Positives = 136/217 (62%), Gaps = 6/217 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP+SF+FS ES + ++YP R QSAVIP+L AQ+QEGWVS A
Sbjct: 1 MSVRRLAKE--QPASFAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I+ +A L M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V + KI
Sbjct: 59 IQEIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKAKI 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ +
Sbjct: 119 G-QANDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+PG R +S P G + +L D G K KI
Sbjct: 176 KPGSYDGRGASEPKGAIHTLTDPK-LYDGSLAKKIKI 211
>gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta]
gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta]
Length = 242
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 93 KVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + +++I++ + P
Sbjct: 152 GVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 210 GPRNGRFASEPKGEPTSLSE-EPKGPGFGLQPG 241
>gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
ATCC 17025]
Length = 303
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 115/203 (56%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W IS+YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHH--AQPDSFAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MA IR LE+ATFY FQL PVG AH+Q+CGTT C++ G E+LI VCR KI
Sbjct: 60 HVADMLGMARIRALEVATFYFMFQLQPVGRVAHIQICGTTSCLICGAEELIRVCREKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G D RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAG--DVPRP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
G QI R SS PAGG TSL +
Sbjct: 178 GSQIGRFSSEPAGGATSLTEVGP 200
>gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 201
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 88/189 (46%), Positives = 118/189 (62%), Gaps = 3/189 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+SF+F+ E+ ++I++YP R QSAV+PLL AQ Q GW S A IE +A +L+MA I
Sbjct: 8 TSFAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPI 67
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV E+ TFYT + PVG HVQVC C+LRG + + E + + + +DG
Sbjct: 68 RVQEVVTFYTMYNQKPVGQ-YHVQVCTNICCLLRGSDGVGETVKELLGVEWGETTADGKF 126
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
+ EVEC GACVNAPM+ I D YEDLTPE + +++A +G+T PGPQ R SAP
Sbjct: 127 TLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALK--RGETPAPGPQGGRQFSAP 184
Query: 194 AGGLTSLLD 202
GG T+L D
Sbjct: 185 EGGPTTLGD 193
>gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori]
gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori]
Length = 245
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 5/213 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R E+ F FS+ + V +++ YP + A+IPLL AQ Q G W+ +A+
Sbjct: 33 VHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAM 92
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA IL++ +RV E+ATFYT F P+G + HVQVC TTPC LRG + ++ + + +
Sbjct: 93 HKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQETN 151
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+ + G S EVEC GACVNAPM+ + D YEDL+ E +EII + + +
Sbjct: 152 CEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEKPK 209
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
PGP+ R +S P GGLTSL + G +D
Sbjct: 210 PGPRSGRFASEPLGGLTSLTE-EPTGPGFGVQD 241
>gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
mitochondrial precursor [Sporisorium reilianum]
Length = 268
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 93/216 (43%), Positives = 118/216 (54%), Gaps = 7/216 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R + F F+ E+A E+IS YP ++AVIPLL Q Q GWVS + +
Sbjct: 55 VHRNTDYNNPDIPFEFNAENAKMAQEIISHYPSQYKKAAVIPLLDLGQRQNSGWVSISVM 114
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +LDM +RV E+ATFYT F PVG +Q+C TTPCML G K++E +K
Sbjct: 115 NYVAKLLDMPPMRVYEVATFYTMFNREPVGQ-FFLQLCTTTPCMLGGCGSTKILEALEDK 173
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ K D + EVEC GAC NAPM+ I D YEDLTPE + IID ++GQ
Sbjct: 174 LGIKAGQTTKDKKFTLVEVECLGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQ--K 231
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
++PGPQ R SS A G T+L GK D
Sbjct: 232 VKPGPQSGRHSSEAATGRTALTS-EPYGPGKHCVPD 266
>gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus
salmonis]
Length = 240
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 120/214 (56%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ +A+
Sbjct: 30 VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ +
Sbjct: 90 NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
D + EVEC GACVNAPMV I D YEDLT + ++EI++ G
Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKVG--TKPA 206
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P GG TSL + G + D
Sbjct: 207 RGPRSSRYAAEPFGGPTSLTEPPPG-PGFGVRSD 239
>gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
[Precursor] (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 270
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 90/223 (40%), Positives = 124/223 (55%), Gaps = 9/223 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E F FSE++ + E+I+RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ +
Sbjct: 101 EVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITEHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------T 174
P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++E++ A +
Sbjct: 160 GITPGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKELLTALKESATATS 219
Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
GQ PGP RIS + GLT+L + +KD +
Sbjct: 220 GQVKIPAPGPLSGRISCENSAGLTNLHNPVWDPETMMRKDGAL 262
>gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
magneticum AMB-1]
gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
magneticum AMB-1]
Length = 202
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 97/199 (48%), Positives = 128/199 (64%), Gaps = 3/199 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
++ ++P SF+F+ E +++YP R QSAV+PLL AQ QEGWVSRAA+EV+A
Sbjct: 1 MSNHSYEPESFAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG + ++ + + +
Sbjct: 61 EMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDDVVAAAKAALGVEFG 119
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
+DG + EVEC GACVNAPM+ I D YEDLTPE + +++AF G+ T +PGPQ
Sbjct: 120 DMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFKRGE--TPKPGPQ 177
Query: 186 IDRISSAPAGGLTSLLDNN 204
R S PAGG TSL +
Sbjct: 178 NGRQFSCPAGGPTSLTELK 196
>gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis
Pb03]
gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
brasiliensis Pb18]
Length = 259
Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ +
Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
+ SD + EVEC GACVNAPMV I D YEDLTPE + ++ A + D
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217
Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
T PGP R S + GLT+L N S + +KD ++
Sbjct: 218 TTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259
>gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
ATCC 17029]
Length = 303
Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 112/203 (55%), Positives = 139/203 (68%), Gaps = 4/203 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI
Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
GPQ R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGP 200
>gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
clemensi]
Length = 238
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 83/214 (38%), Positives = 120/214 (56%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ +A+
Sbjct: 28 VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA+++ M +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ +
Sbjct: 88 NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILQACKDNLG 146
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
D + EVEC GACVNAPMV I D YEDLT + + EI+D G+
Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--KPA 204
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P GG TSL + G + D
Sbjct: 205 RGPRSSRYAAEPFGGPTSLTEPPPG-PGFGVRSD 237
>gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter
sphaeroides 2.4.1]
Length = 303
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 112/203 (55%), Positives = 139/203 (68%), Gaps = 4/203 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI
Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
GPQ R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGP 200
>gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 249
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 7/216 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R + F F+ E+ +E+I+RYPP ++A +P+L Q Q GW S + +
Sbjct: 36 VHRDTDYNNPSIPFEFTPENLKRAHEIIARYPPQYKKAAALPILDLGQRQNKGWTSISVM 95
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +LDM +RV E+ATFYT + PV VQ+C TTPC L G K++E +
Sbjct: 96 NAVAKLLDMPKMRVYEVATFYTMYNREPVAP-NFVQLCTTTPCQLGGCGSTKILETIESH 154
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ P DG ++ EVEC GAC NAPM+ IG D YEDLTPE +I+DA + +G+
Sbjct: 155 LGVHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDDYYEDLTPETTVKILDALA--RGEK 212
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S + GLT+L G+ +
Sbjct: 213 PKPGPQSGRQTSENSAGLTTLTT-KPYGPGEFCSPE 247
>gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
Length = 259
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ +
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
+ D + EVEC GACVNAPM+ I D YEDLTPE + ++DA +
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217
Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R S + GLT+L N S + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259
>gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster]
gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia]
gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans]
gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster]
gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia]
gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans]
gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct]
gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct]
Length = 242
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 93 KVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + +++I++ + P
Sbjct: 152 GVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 210 GPRNGRFASEPKGEPTSLSE-EPKGPGFGLQAG 241
>gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
brasiliensis Pb01]
gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
brasiliensis Pb01]
Length = 259
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ +
Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
+ SD + EVEC GACVNAPMV I D YEDLTPE + ++ A +
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217
Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R S + GLT+L N S + +KD ++
Sbjct: 218 VTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259
>gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
capsulatus H143]
gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
Length = 259
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ +
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
+ D + EVEC GACVNAPM+ I D YEDLTPE + ++DA +
Sbjct: 158 HLGVSNGQTTLDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217
Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R S + GLT+L N S + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259
>gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus]
Length = 238
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 81/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT
Sbjct: 51 RIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 110
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GAC
Sbjct: 111 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 169
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
VNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL +
Sbjct: 170 VNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 226
Query: 205 SKKRGKKKKDD 215
K G +
Sbjct: 227 PKGPGFGVQAG 237
>gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogaster]
Length = 269
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 60 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 119
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 120 KVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQLGI 178
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT + +++I++ + P
Sbjct: 179 GVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADKISP--P 236
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R +S P G TSL + K G +
Sbjct: 237 GPRNGRFASEPKGEPTSLSE-EPKGPGFGLQAG 268
>gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
KD131]
Length = 303
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 113/203 (55%), Positives = 140/203 (68%), Gaps = 4/203 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI
Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
GPQ R SS PAGG TSL + S
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGS 200
>gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta]
Length = 243
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 81/214 (37%), Positives = 115/214 (53%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E + F F+E + + +++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDSEHDNPNIPFEFNEANKKRIEALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P+G + H+Q+C TPC LR + ++ +
Sbjct: 93 KVAEILGVPNMRVYEVATFYTMFNRKPMG-KYHIQICTCTPCWLRDSDSIVNAVTKATNC 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ ++D + EVEC GAC NAPM + D YEDLTPE II+A G+ P
Sbjct: 152 ELGGTSADKMFTVSEVECLGACANAPMFQVNDDYYEDLTPETTTAIINALKKGERPP--P 209
Query: 183 GPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ R ++ PAGGLTSL G + D
Sbjct: 210 GPQNVSRFAADPAGGLTSLTTPPPG-PGFGVRSD 242
>gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
Length = 202
Score = 224 bits (570), Expect = 8e-57, Method: Composition-based stats.
Identities = 91/207 (43%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS++R A++ QP +F F+ S V ++S+YP + QSAV+ LL AQ Q W+ A
Sbjct: 1 MSLKRPAKD--QPENFEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLA 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ +A L+M YI+V E+ATFYT + LSPVG VQVC TTPCM+RG KL+E C+ K
Sbjct: 59 AMKYIAKFLEMPYIKVYEVATFYTMYNLSPVG-NFFVQVCTTTPCMIRGANKLVEACKEK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D +G+T
Sbjct: 118 ISENECELSNDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDKI--LKGET 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
+PG R+++ P +L+D +
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLMDLKNA 202
>gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Lepeophtheirus salmonis]
Length = 240
Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats.
Identities = 81/214 (37%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ +A+
Sbjct: 30 VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ +
Sbjct: 90 NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
D + EVEC GACVNAPMV I D YEDLT + ++EI++
Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKV--DTKPA 206
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P GG TSL + G + D
Sbjct: 207 RGPRSSRYAAEPFGGPTSLTEPPPG-PGFGVRSD 239
>gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b
[Rattus norvegicus]
Length = 227
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 82/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT
Sbjct: 40 RIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 99
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GAC
Sbjct: 100 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 158
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
VNAPMV I D YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL +
Sbjct: 159 VNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 215
Query: 205 SKKRGKKKKDD 215
K G +
Sbjct: 216 PKGPGFGVQAG 226
>gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus]
Length = 192
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
++ + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+AT
Sbjct: 1 KNYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVAT 60
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC
Sbjct: 61 FYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVEC 119
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
GACVNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL
Sbjct: 120 LGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSL 177
Query: 201 LDNNSKKRGKKKKDD 215
+ K G +
Sbjct: 178 TE-PPKGPGFGVQAG 191
>gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 202
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 96/199 (48%), Positives = 129/199 (64%), Gaps = 3/199 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
++ ++P SF+F+ E I++YP R QSAV+PLL AQ QEGWVSRAA+EV+A
Sbjct: 1 MSNHSYEPESFAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG ++++ + + +
Sbjct: 61 EMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDEVVAAAKAALGVEFG 119
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
+DG + EVEC GACVNAPM+ I D YEDL+ E + +++AF +G+T +PGPQ
Sbjct: 120 EMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFK--RGETPKPGPQ 177
Query: 186 IDRISSAPAGGLTSLLDNN 204
R S PAGG TSL +
Sbjct: 178 NGRQFSCPAGGPTSLTELK 196
>gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407]
Length = 272
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FS ++ + E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 54 VHRNTADNNPDIPFQFSADNKNVIQEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 113
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + +
Sbjct: 114 EVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDVIVKAIKEHL 172
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST------ 174
K +DG ++ EVEC GACVNAPM+ I YEDLTPE ++ ++
Sbjct: 173 GIKQGETTADGLFTFIEVECLGACVNAPMIQINDHYYEDLTPETVKSLLSGLKAAALDPS 232
Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
G+ + GP R S + GLTSL D +
Sbjct: 233 GKTPEPKVGPTTGRHSCENSAGLTSLTDKPWGVETTRS 270
>gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
vestfoldensis SKA53]
gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
vestfoldensis SKA53]
Length = 309
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 109/206 (52%), Positives = 141/206 (68%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP++F+F++ + W + ++P R SA+IP+L RAQEQEGW++R AIE
Sbjct: 2 LRRLYHD--QPATFAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +LDMAY+R LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI
Sbjct: 60 YVAKMLDMAYMRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKIAP 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++DG SWEEVEC G+C NAPM IGKD YEDLT RL EIID + G+ P
Sbjct: 120 KAHSLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGR--VPTP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R ++ P GGLT+L D S K
Sbjct: 178 GPQNGRFAAEPKGGLTTLKDFTSGKA 203
>gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
marneffei ATCC 18224]
gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
marneffei ATCC 18224]
Length = 260
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 7/221 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FS E+ ++E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRNKPDNNPSIPFKFSAENEKVIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G +K+++ +
Sbjct: 101 EVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINKHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179
P H DG ++ EVEC GACVNAPMV I D YEDLTPE + +++ A +
Sbjct: 160 GITPGHTTEDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESITQLLTALKESATNPA 219
Query: 180 ---IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLT+L + +KD ++
Sbjct: 220 VKVPAPGPLSGRDTCENSAGLTNLKEVTWNPEQMMRKDGEL 260
>gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
Length = 259
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ +
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
+ D + EVEC GACVNAPM+ I D YEDLTPE + ++DA +
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKGAETD 217
Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R S + GLT+L N S + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRSDGEL 259
>gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
Length = 254
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 113/206 (54%), Positives = 139/206 (67%), Gaps = 4/206 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL QP+SF+F+ + W +S+YP R SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2 LRRLHH--TQPASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA++L MAYIR LE+ATFY FQL PVG+ A++Q+CGTT C++ G E LI VCR I
Sbjct: 60 HVADMLGMAYIRALEVATFYFMFQLQPVGSVANIQICGTTSCLICGAEDLIAVCRELIAD 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
KP ++DG SWEEVEC GAC NAPM IGKD YEDL ERL +I FS G+ P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGE--VPVP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
GPQ R +S P GLTSL D+ + +
Sbjct: 178 GPQNGRYASEPLAGLTSLKDHAAGRA 203
>gi|254568298|ref|XP_002491259.1| hypothetical protein [Pichia pastoris GS115]
gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Pichia pastoris GS115]
gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone
oxidoreductase (complex I) [Pichia pastoris]
gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Pichia pastoris CBS
7435]
Length = 241
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R ++ F F++E+ E+I++YPP + AV+PLL Q Q G+ S +
Sbjct: 30 ISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 89
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA LDM +RV E+ATFYT + P+G + +VQVC TTPC L G + +++ +
Sbjct: 90 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNVQVCTTTPCQLCGSDGIMKAITEHL 148
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+P D + +EVEC GACVNAPM+ + D YEDLTPER EI+ F +G D
Sbjct: 149 QIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQSG--DIP 206
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGP DR S P G L + +DD
Sbjct: 207 KPGP-ADRHSCEPHSGPKVLTNETPYHVKDFIRDD 240
>gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
clemensi]
Length = 238
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ +A+
Sbjct: 28 VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA+++ M +RV E+ATFYT F +PVG + HVQVC T PC LRG +++++ C++ +
Sbjct: 88 NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTAPCWLRGSDEILQACKDNLG 146
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
D + EVEC GACVNAPMV I D YEDLT + + EI+D G+
Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--KPA 204
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R ++ P GG TSL + G + D
Sbjct: 205 RGPRSSRYAAEPFGGPTSLTEPPPG-PGFGVRSD 237
>gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
Length = 257
Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 90/214 (42%), Positives = 123/214 (57%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R F F+ E+ E+I+RYPP ++AVIPLL Q Q GW S + +
Sbjct: 46 VHRDTPYNNPKIPFEFNAENLKRAEEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVM 105
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +L M +RV E+ATFYT F P+G VQVC TTPCMLRG ++ N+++
Sbjct: 106 NYVARLLGMPPMRVYEVATFYTMFNREPIGE-HFVQVCTTTPCMLRGSTDILNTVCNELN 164
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
KP + DG + EVECQGAC NAPM+++G D YEDLTPE + I+ AFS +G+ +
Sbjct: 165 VKPGGTSKDGKFTVVEVECQGACSNAPMMVVGDDFYEDLTPESTKRILAAFS--KGEKPK 222
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ +R +S + GLT+L G+ +
Sbjct: 223 AGPQSNRQTSENSAGLTALTS-KPYGPGEFCTPE 255
>gi|289619209|emb|CBI54477.1| unnamed protein product [Sordaria macrospora]
Length = 271
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R + F FS E+ + E+I RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 57 HRNTPDNNPDIPFKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNE 116
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
VA +L+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + +
Sbjct: 117 VARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLG 175
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---GQGD 178
K DG ++ EVEC GAC NAPMV I D +EDLTPE + +++ A
Sbjct: 176 IKQGETTPDGLFTFLEVECLGACANAPMVQINDDYFEDLTPETITQVLVALKESVTDASK 235
Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNN 204
+PGPQ R + A GLTSL
Sbjct: 236 APKPGPQSGRQTCENAAGLTSLTSEP 261
>gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 260
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRNKPDNNPSIPFKFSKENEKIIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G +K+++ N +
Sbjct: 101 EVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINNHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179
P H DG ++ EVEC GACVNAPMV I D YEDLTPE + +++ A +
Sbjct: 160 GITPGHTTDDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESIVQLLTALKESATNPA 219
Query: 180 ---IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLT+L + +KD ++
Sbjct: 220 AKVPAPGPLSGRETCENSAGLTNLKEVVWNPEQMMRKDGEL 260
>gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Cryptococcus gattii WM276]
gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Cryptococcus gattii WM276]
Length = 249
Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 83/216 (38%), Positives = 118/216 (54%), Gaps = 7/216 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R + F F+ E+ +E+ISRYPP ++A +P+L Q Q GW S + +
Sbjct: 36 VHRDTDYNNPSIPFEFTPENLKRAHEIISRYPPQYKKAAALPILDLGQRQNKGWTSISVM 95
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +LDM +RV E+ATFYT + PV VQ+C TTPC L G K++E +
Sbjct: 96 NAVAKLLDMPRMRVYEVATFYTMYNREPVAP-NFVQLCTTTPCQLGGCGSTKILETIESH 154
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ P DG ++ EVEC GAC NAPM+ IG + YEDLTPE +I+D + +G+
Sbjct: 155 LGIHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDEYYEDLTPETTIKILDTLA--RGEK 212
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S + GLT+L G+ +
Sbjct: 213 PKPGPQSGRQTSENSAGLTTLTT-KPYGPGEFCTPE 247
>gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis]
gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis]
Length = 264
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 3/202 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ D + EVEC GACVNAPMV + D YEDLT + +++I+ + P
Sbjct: 152 GIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNN 204
GP+ R +S P G TSL +
Sbjct: 210 GPRNGRFASEPKGKPTSLTEEP 231
>gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Brugia malayi]
gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor, putative [Brugia malayi]
Length = 234
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 3/196 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M V R +E + F F+ E+ + +IS+YPP A+IP+L AQ Q GW+ +A
Sbjct: 23 MVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLAQRQHGWLPISA 82
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+
Sbjct: 83 MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 141
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K DG S EVEC GACVNAPMV I D YEDLTPE + +I+D F G+
Sbjct: 142 GIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTPEDISDILDEFKAGKR--P 199
Query: 181 RPGPQIDRISSAPAGG 196
+PGP+ R ++ P G
Sbjct: 200 KPGPRSGRTAAEPING 215
>gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial [Apis mellifera]
Length = 243
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E + F F+E + + ++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDSEVDNPSIPFEFNEANKKRIEALLKIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++E +
Sbjct: 93 KVAEILNIPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKVTNC 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K ++D + EVEC GAC NAPM + D YEDLTPE II+AF G+ P
Sbjct: 152 KVGEMSADKLFTVSEVECLGACANAPMFQVNDDYYEDLTPESAISIINAFKKGERPP--P 209
Query: 183 GPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ R ++ PAGGLTSL G + D
Sbjct: 210 GPQNSPRFAADPAGGLTSLTSPPPG-PGFGVRSD 242
>gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
humanus corporis]
gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
humanus corporis]
Length = 242
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ +F F+ E+ +++ YP ++A++PLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPDVNFDFTPENMKRAEAIMAIYPEGHKRAALLPLLDLAQRQHGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +RV E+ATFYT + P+G + H+QVC TTPC LR + ++ V + K++
Sbjct: 93 KVAEILNLPKMRVYEVATFYTMYMRKPMG-KYHIQVCTTTPCWLRDSDSIMNVIKKKLNI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
D + EVEC GACVNAPMV I D YEDLT E + +I++ + G+ +
Sbjct: 152 NVGETTKDKLFTLSEVECLGACVNAPMVQINDDYYEDLTEESMNQILEDLANGR--KPKA 209
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ R S P GGLTSL G + D
Sbjct: 210 GPQSGRCSCEPHGGLTSLTTEPPG-PGVGVRSD 241
>gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099]
gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti
MAFF303099]
Length = 424
Score = 221 bits (562), Expect = 6e-56, Method: Composition-based stats.
Identities = 131/211 (62%), Positives = 159/211 (75%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE QP SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1 MSVRRLAEASVQPVSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
PGPQ R S PA GLT+L + + +
Sbjct: 181 APGPQNGRTGSEPASGLTTLKSEKAILKSTR 211
>gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
Length = 264
Score = 221 bits (562), Expect = 7e-56, Method: Composition-based stats.
Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 3/202 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 93 KVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQLGI 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ D + EVEC GACVNAPMV + D YEDLT + +++I+ + P
Sbjct: 152 GIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADKISP--P 209
Query: 183 GPQIDRISSAPAGGLTSLLDNN 204
GP+ R +S P G TSL +
Sbjct: 210 GPRNGRFASEPKGKPTSLTEEP 231
>gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
centenum SW]
gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
centenum SW]
Length = 210
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 97/203 (47%), Positives = 132/203 (65%), Gaps = 7/203 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS + + SFSF++E+ +I++YPP R QSAV+PLL AQ Q G W+SR
Sbjct: 1 MSA---TDGGQEAGSFSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRP 57
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA++L+M IR +E+A+FYT + L PVG + VQVC TTPC LRG + ++ C K
Sbjct: 58 AIEYVADMLEMPRIRAMEVASFYTMYNLKPVG-KHFVQVCTTTPCWLRGSDDILHTCEKK 116
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ K +DG + E EC GACVNAPMV IG +EDLTPE +E I+DA + + +T
Sbjct: 117 LGIKAGETTADGQFTVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALA--RDET 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
+PGPQ RI+S P+GG T+L +
Sbjct: 175 PKPGPQNGRIASCPSGGPTTLTE 197
>gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
OR74A]
gi|730212|sp|P40915|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
mitochondrial; Flags: Precursor
gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa]
gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24)
[Neurospora crassa]
gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
OR74A]
gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD
Length = 263
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 79/207 (38%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FS ++ + E+I RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 48 VHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMN 107
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + +
Sbjct: 108 EVARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHL 166
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---GQG 177
K DG ++ EVEC GAC NAPMV I D +EDLTPE +++++ A
Sbjct: 167 GIKQGETTPDGLFTFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVS 226
Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNN 204
+PGPQ R + A GLTSL
Sbjct: 227 KAPQPGPQSGRQTCENAAGLTSLTSEP 253
>gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
6260]
gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
6260]
Length = 251
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 3/215 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R + + F F+ ++ E+I++YPP ++AV+PLL Q Q G+ + +
Sbjct: 39 ISVHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + H+QVC TTPC L G +++++ +N +
Sbjct: 99 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYHLQVCTTTPCQLCGSDEVMDAIKNHL 157
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + EEVEC GACVN PM+ + D EDLT E+ E++ G+ +
Sbjct: 158 KIKPGQTTPDNLFTLEEVECLGACVNGPMMGVNDDYAEDLTGEKTVELLKNLQEGKPMHV 217
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP R S P G LL K + D
Sbjct: 218 --GPVSGRDSCEPFSGPKVLLSKEPHDIRKVTRSD 250
>gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC
30864]
Length = 255
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 96/227 (42%), Positives = 128/227 (56%), Gaps = 17/227 (7%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R A ++ F F+ E+ +I+ YPP +A IPLL AQ Q GW+
Sbjct: 33 MSDKLFVHRDA-GVYKDEPFEFTAENLTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWL 91
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIE 114
+A+ VA +LDMA IRV E A+FYT F +G + HVQVC TTPC+L G +K+++
Sbjct: 92 PLSAMNTVAKMLDMAPIRVYETASFYTMFNREKIG-KYHVQVCTTTPCLLGGCGSDKIMK 150
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ + P SDG ++ EVEC GACVNAPM+ I D YEDLTPE E+I+D F
Sbjct: 151 AVQKNLGVHPGGTTSDGLFTFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFR- 209
Query: 175 GQGDTIRPGPQID------RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+GD +PGPQ D R S P GLT+L + + G + D
Sbjct: 210 -RGDRPKPGPQKDPATGKLRKSCEPVDGLTTLKEKPTG-PGFGVRAD 254
>gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+]
gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+]
Length = 260
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 6/215 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F++++ + E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 45 VHRNTPDNNPSIPFKFTDQNEKIITEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 104
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + +
Sbjct: 105 EVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHL 163
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQG 177
K DG ++ EVEC GACVNAPMV I + YEDLTPE ++++ A
Sbjct: 164 GIKQGETTPDGLFTFIEVECLGACVNAPMVQINDEYYEDLTPETTKQLLTALKESLNDAS 223
Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGP R + + GLT+L +
Sbjct: 224 KAPKPGPVSGRDTCENSAGLTNLTSEPWGVETTRS 258
>gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica]
gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
[Yarrowia lipolytica]
gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica]
Length = 243
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 4/216 (1%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
SV R E F FS E+ EVI++YPP ++AV+PLL Q Q G+ S + +
Sbjct: 31 SVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVM 90
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +L+M +RV E+ATFYT + +P+G R H+Q+C TTPC L G + ++E +N ++
Sbjct: 91 NYVAKLLEMPPMRVYEVATFYTMYNRTPMG-RYHLQICTTTPCQLCGSDGIMEAVQNTLN 149
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
KP D + EVEC GACVNAPM+ I D YEDLTPE ++++ G+
Sbjct: 150 IKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGK--MPT 207
Query: 182 PGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
PGP+ R PA G LL ++
Sbjct: 208 PGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI 243
>gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
[Acromyrmex echinatior]
Length = 243
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E++ F F+E + ++ +++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDSEQDNPNIPFEFNEANKKRIDALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ILD+ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++ +
Sbjct: 93 KVAEILDVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDSIVNAVTKATNC 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ ++D + EVEC GAC NAPM + D YEDLTPE II+AF G+ P
Sbjct: 152 ELGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATTIINAFKKGERPP--P 209
Query: 183 GPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ R ++ PAGGLTSL G + D
Sbjct: 210 GPQNCSRFAADPAGGLTSLTTPPPG-PGFGIRSD 242
>gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
Length = 254
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A+
Sbjct: 29 VHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEGHKAGALIPLLDLAQRQHGWLPISAMH 88
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+
Sbjct: 89 EVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKLGI 147
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP---------------ERLEE 167
DG + EVEC GACVNAPM+ I D +EDLTP + + E
Sbjct: 148 HAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKVFFLFELCFFISIIQDVHE 207
Query: 168 IIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
I+D G+ GP+ R+++ P G LTSL + G +
Sbjct: 208 ILDDLKAGR--KPAAGPRSGRLAAEPFGELTSLKETPPG-PGFGLQA 251
>gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 426
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 130/211 (61%), Positives = 159/211 (75%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+K+
Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKV 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G +
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAV 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
PGPQ R S PA GLT+L + + +
Sbjct: 181 EPGPQNGRTGSEPASGLTTLKSEKAILKSTR 211
>gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 241
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S +
Sbjct: 27 ISVHRDTKEDNPNIPFEFTSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + ++E N +
Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMEAITNHL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ I D +EDLTPE +++ G+ +
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATVKLLQQLQEGK-ELS 204
Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP R S P G LL K + D
Sbjct: 205 EVGPVDGKRESCEPFSGQKVLLGKEPNDIRKFTRAD 240
>gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
Py2]
gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
Py2]
Length = 229
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 106/203 (52%), Positives = 127/203 (62%), Gaps = 7/203 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MSVRRLA E QP SF + E ++I++YP R SAV+PLL Q+ G W+
Sbjct: 1 MSVRRLAAE--QPESFDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI VA L MA IRVLEIATFYT F L PVG + VQ+CGTTPCMLRG E + VC K
Sbjct: 59 AIRAVAERLGMANIRVLEIATFYTMFNLEPVG-KYFVQLCGTTPCMLRGAEAIKHVCEKK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I + H ++DGT SW EVEC GAC NAPMV I D YEDLTPE E+++D + G+
Sbjct: 118 IGHE-RHVSADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
++ GPQ R S P GG L D
Sbjct: 175 VKVGPQNSRRGSEPEGGARVLSD 197
>gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis]
Length = 241
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FSEE+ V + + YP +A++P+L AQ Q GW+ +A+
Sbjct: 30 VHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMN 89
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-- 120
VA+++ + +R+ E+ATFYT + VG + HVQVC TTPCMLRG +++++ + +
Sbjct: 90 KVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLG 148
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ D + EVEC GAC NAPM+ I D YEDLT + + I G+
Sbjct: 149 SDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFSEIRAGK--KP 206
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R+++ P GLTSL G K +++
Sbjct: 207 KMGPQSGRLAAEPISGLTSLTSTP-YGPGFKVQEN 240
>gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
putative [Candida dubliniensis CD36]
gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
putative [Candida dubliniensis CD36]
Length = 243
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S +
Sbjct: 29 ISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + +
Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMKAITDYL 147
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ I D +EDLTPE ++ G+ +
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATINLLKQLQEGK-ELT 206
Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP R S P G LL+ K + D
Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242
>gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 268
Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 83/223 (37%), Positives = 115/223 (51%), Gaps = 9/223 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R F FSE++ +E++ RYPP ++AV+PLL Q Q G+ S +
Sbjct: 38 LSVHRNKVNNNPSLPFKFSEQNLKLADEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 97
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +++
Sbjct: 98 MNEVARMLEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSTAIVKAITE 156
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
+ P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ I+ A
Sbjct: 157 HLGITPGHTTEDGLFTFTEVECLGACVNAPMVQINDDYYEDLTPESIKTILTALKDSATA 216
Query: 178 -----DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PGP R + + GLT+L D + D
Sbjct: 217 TGAGAKIPAPGPLSGRDTCENSAGLTNLTDVPEWNPETMMRKD 259
>gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
513.88]
gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger]
Length = 269
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 39 LAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQYKKAAVMPVLDVGQRQHGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++
Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
+ P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A
Sbjct: 158 HLGITPGHTTEDGLFTFVEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217
Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
GQ PGP R + + GLT+L++ +KD +
Sbjct: 218 TEAGQTVKVPAPGPLSGRDTCENSAGLTNLIEPVWDPATMMRKDGAL 264
>gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
[Pichia angusta DL-1]
Length = 234
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 114/214 (53%), Gaps = 5/214 (2%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
+V R + Q F F+ E+ E++ RYPP +SAV+PLL Q Q G+ S A +
Sbjct: 25 AVHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAVM 84
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +LDM +RV E+A+FYT + PVG + H+Q+C TTPC L + +IE ++
Sbjct: 85 NHVAELLDMPAMRVYEVASFYTMYHREPVG-KYHIQICTTTPCQLCNSDSVIEAIMKHLN 143
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+P DG S EEVEC GACVNAPM+ I D YEDLT E EI++A +G+ I
Sbjct: 144 LQPNQTTPDGLFSLEEVECLGACVNAPMMQINDDYYEDLTAESAVEILEALKSGKDVPIG 203
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R S P G L+ N + D
Sbjct: 204 T---TKRESCEPFSGPKVLV-NEPLDVSTLTRSD 233
>gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
dermatitidis ER-3]
gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 259
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 84/222 (37%), Positives = 122/222 (54%), Gaps = 8/222 (3%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
+V R E F FSEE+ ++E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 40 AVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAVMPLLDLGQRQHGYTSISVM 99
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +L+M +RV E+ATFYT + PVG + HV+VC TTPC L G +K+++ +
Sbjct: 100 NEVARMLEMPPMRVYEVATFYTMYNREPVG-KYHVKVCTTTPCQLGGCGSDKIMKAVTDH 158
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG-- 177
+ D + EVEC GACVNAP+V I D YEDLTPE + ++DAF +
Sbjct: 159 LGVSNGQTTPDKLYTVLEVECLGACVNAPVVQINDDYYEDLTPESVVSLLDAFKESETNK 218
Query: 178 --DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP +R + + GLT+L N S + D ++
Sbjct: 219 SVKIPPPGPLSERNTCENSAGLTNLT-NPSWSPELMRTDGEL 259
>gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
118892]
gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum
CBS 118892]
Length = 267
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+
Sbjct: 36 MSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYT 95
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIE 114
S + + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++
Sbjct: 96 SISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVK 154
Query: 115 VCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 155 AITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALR 214
Query: 174 TGQ----------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 215 ASAVAAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267
>gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
(nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
proteobacterium HIMB114]
gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
(nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
proteobacterium HIMB114]
Length = 201
Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats.
Identities = 95/206 (46%), Positives = 133/206 (64%), Gaps = 6/206 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS + +A+ QPSSF+F++E+ + EV+ +YP ++ +SAV+PLL AQ Q W+ A
Sbjct: 1 MSGKHVAK--NQPSSFAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLA 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI++++++L + YI+V E+ATFYT + L+PVG + VQVC TTPCM+RG K++EVC+
Sbjct: 59 AIQLISDMLGVTYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCMIRGSGKVVEVCKKH 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I +K H N + SW EVEC GACVNAPMV I D +EDL E+ E II F G+
Sbjct: 118 ISEKQGHLNKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGK--L 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205
G Q R S P T+LL N+
Sbjct: 176 PNIGSQSGRKGSEPIQNRTTLLKKNA 201
>gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats.
Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 7/216 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F+EE V+ VISRYP ++AVIP+L Q Q GW S A +
Sbjct: 39 VHRDTDYNNPNIKFEFNEEYRKKVDTVISRYPKQYRKAAVIPVLDLGQRQNGWTSLAVMN 98
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+ATFYT + PVG + + CGTTPC+L G +++ + + +
Sbjct: 99 HVAEVLEMPRMRVYEVATFYTMYNREPVG-KHLISYCGTTPCLLGGVGGKRIWDTMTSHL 157
Query: 121 -HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
K DG + EVEC GAC NAPM+ I D YEDLTPE +I+DA + G+ T
Sbjct: 158 GGIKNGETTKDGKFTLVEVECLGACSNAPMIQINDDFYEDLTPESTIKILDALARGE--T 215
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S A G+T+L G+ + +
Sbjct: 216 PKPGPQSSRKTSENAQGMTTLTSAP-YGPGEHCQPE 250
>gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus
Af293]
gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
fumigatus Af293]
gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
fumigatus A1163]
Length = 268
Score = 218 bits (554), Expect = 5e-55, Method: Composition-based stats.
Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S +
Sbjct: 39 LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E +
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
+ H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A
Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESATA 217
Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R S + GLT+L + +KD +
Sbjct: 218 AESGKEVKVPAPGPLSGRHSCENSAGLTNLQNPVWDPETMMRKDGAL 264
>gi|331251140|ref|XP_003338171.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317161|gb|EFP93752.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 277
Score = 218 bits (554), Expect = 6e-55, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 112/213 (52%), Gaps = 7/213 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R F F+ E I +PP ++AVIP+L AQ Q GW S + +
Sbjct: 64 VHRDTSYNNPQIPFEFTPEYMEKAQRCIDNFPPQYKKAAVIPVLDLAQRQNNGWTSISVM 123
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +L+M +RV E+ATFYT F PVG VQ+C TTPCML G ++E +N
Sbjct: 124 NYVAKLLEMPPMRVYEVATFYTMFNREPVGE-HFVQICTTTPCMLGGCGSGVIVEAIKNH 182
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + D + EVEC GAC NAPMV I D YEDLTPE + +++D + G+
Sbjct: 183 LGVELGQTTKDKKFTVIEVECLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGR--K 240
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGPQ R SS P G LTSL + G+
Sbjct: 241 PKPGPQSSRQSSEPVGKLTSLSE-KPYGPGEHC 272
>gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton
tonsurans CBS 112818]
gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 267
Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+
Sbjct: 36 MSDVLHVHRNTPSNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYT 95
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIE 114
S + + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++
Sbjct: 96 SISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVK 154
Query: 115 VCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 155 AITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALK 214
Query: 174 TGQ----------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 215 ASAVAAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267
>gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
Length = 267
Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+
Sbjct: 36 MSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYT 95
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIE 114
S + + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++
Sbjct: 96 SISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVK 154
Query: 115 VCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 155 AITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALK 214
Query: 174 TGQ----------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 215 ASAVAAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267
>gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
Length = 267
Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+
Sbjct: 36 MSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYT 95
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIE 114
S + + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++
Sbjct: 96 SISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVK 154
Query: 115 VCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 155 AITEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALK 214
Query: 174 TGQ----------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 215 ASAVAAENGTQSSVKIPAPGPLSGRQTCENSAGLTSLTE-PLWGNETLRKDGEL 267
>gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis]
Length = 1053
Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 6/216 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FSEE+ V + + YP +A++P+L AQ Q GW+ +A+
Sbjct: 30 VHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMN 89
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-- 120
VA+++ + +R+ E+ATFYT + VG + HVQVC TTPCMLRG +++++ + +
Sbjct: 90 KVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLG 148
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ D + EVEC GAC NAPM+ I D YEDLT + + I + G+
Sbjct: 149 SDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFNEIRAGK--KP 206
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
+ GPQ R+++ P GLTSL GK +
Sbjct: 207 KMGPQSGRLAAEPISGLTSLTSTP-YGPGKFGDSGE 241
>gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
[Camponotus floridanus]
Length = 323
Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats.
Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R +E + F F E + + +++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 114 HRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 173
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + +++ + +
Sbjct: 174 VAEILEVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDAIVKAVTAATNCE 232
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
++D + EVEC GAC NAPM + D YEDLTPE +I+AF G+ PG
Sbjct: 233 IGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVINAFKKGERPP--PG 290
Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PQ R ++ PAGGLTSL G + D
Sbjct: 291 PQNAPRFAADPAGGLTSLTSPPPG-PGFGVRSD 322
>gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
okayama7#130]
gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
okayama7#130]
Length = 245
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 6/212 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R F F + E+I+RYPP ++AVIPLL Q Q GW S + +
Sbjct: 33 VHRDTPYNNPKIPFEFDAANMKRAQEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVM 92
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +L+M +RV E+ATFYT F P+G +Q+C TTPCML G ++ +
Sbjct: 93 NYVAKLLEMPAMRVYEVATFYTMFNREPIGQ-NFIQLCTTTPCMLCGSTNILNTISEHLG 151
Query: 122 -QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP DG + EVECQGAC NAPM+++ D YEDLTPE ++I+DAF+ +G+
Sbjct: 152 GIKPGQTTKDGKFTLVEVECQGACSNAPMMVVNDDYYEDLTPESTKKILDAFA--RGEKP 209
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGPQ R +S + GLT+L G+
Sbjct: 210 KPGPQSSRHTSENSAGLTNLTG-KPYGPGEFC 240
>gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
clavatus NRRL 1]
gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
clavatus NRRL 1]
Length = 268
Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/227 (37%), Positives = 120/227 (52%), Gaps = 11/227 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R + F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S +
Sbjct: 39 LAVHRNSPSNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E
Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KYFVQLCTTTPCQLGGCGSTKILEAIEE 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
+ H DG + EVEC GACVNAPMV I D YEDLTPE ++ ++ A
Sbjct: 158 HLGITSGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217
Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+G+ PGP R + + GLT+L D +KD +
Sbjct: 218 AESGKSVKVPAPGPLSGRQTCENSAGLTNLQDPVWDPETMMRKDGAL 264
>gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides
posadasii str. Silveira]
Length = 264
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S +
Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157
Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST--- 174
+ D + EVEC GACVNAPMV I D YEDLTPE ++++A
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217
Query: 175 -----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ + PGP R S + GLTSL +KD ++
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLTS-PLWSTETLRKDGEL 264
>gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS]
Length = 264
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S +
Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157
Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST--- 174
+ D + EVEC GACVNAPMV I D YEDLTPE ++++A
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217
Query: 175 -----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ + PGP R S + GLTSL +KD ++
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLTS-PLWSTETLRKDGEL 264
>gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
albicans SC5314]
gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
albicans SC5314]
gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
albicans SC5314]
gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
albicans SC5314]
gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1]
Length = 243
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R +E+ +F F+ E+ E+I++YPP + A +PLL Q Q G+ S +
Sbjct: 29 ISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + +
Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDSIMKAITDYL 147
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP D + +EVEC GACVNAPM+ I D +EDL+PE ++ G+ +
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGK-ELT 206
Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP R S P G LL+ K + D
Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242
>gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
Length = 208
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 82/191 (42%), Positives = 117/191 (61%), Gaps = 3/191 (1%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
QP++F+F+ E+ ++++YP R +S V+PLL AQ Q+GWVS AAIE V +
Sbjct: 10 QPATFAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTP 69
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+RVLE+ATFYT ++LSP G R H++VC PC LRG ++++ R+++ + DG
Sbjct: 70 RMRVLEVATFYTMYKLSPKG-RHHIEVCTNLPCWLRGSDEILRAVRDELGIEVGGETDDG 128
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
S E EC GACVNAPM+ IG D YEDLT E + E++ G+ + PG Q R +
Sbjct: 129 LFSLAEAECLGACVNAPMLQIGDDYYEDLTYESVRELVRKLKVGE--PVTPGSQSGRQGA 186
Query: 192 APAGGLTSLLD 202
P GG T+L
Sbjct: 187 CPEGGPTTLKS 197
>gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
fischeri NRRL 181]
gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
fischeri NRRL 181]
Length = 268
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S +
Sbjct: 39 LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E +
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
+ H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A
Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKTLLTALKESATA 217
Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R + + GLT+L + +KD +
Sbjct: 218 AESGKEVKVPAPGPLSGRHTCENSAGLTNLQNPVWDPETMMRKDGAL 264
>gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1]
Length = 260
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 10/219 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ + E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRNTEDNNPDIPFKFNAENQKVMAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + +PVG + VQ+C TTPC L G + +++ + ++
Sbjct: 101 EVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQICTTTPCQLGGCGSDVIVKAIKEEL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179
+ +DG + EVEC GACVNAPM+ I D YEDLTP +++++ + + T
Sbjct: 160 GIEQGQTTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPASVKDLLKSLRSKATATD 219
Query: 180 ------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGP R + GLTSL +K
Sbjct: 220 PSTVNVPKPGPLSGRKDCENSAGLTSLTSEPWGTETTRK 258
>gi|312222072|emb|CBY02012.1| hypothetical protein [Leptosphaeria maculans]
Length = 297
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 86/257 (33%), Positives = 117/257 (45%), Gaps = 44/257 (17%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E F F+ ++ ++E++SRYP ++AV+PLL Q Q G+ S + +
Sbjct: 43 VHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMN 102
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L+M +RV E+ATFYT + PVG + HVQVC TTPCMLR + +++ C +++
Sbjct: 103 EVARLLEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLRDSDAVMKACEDELGI 161
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS--------- 173
DG + EVEC GAC NAPMV I D YEDLT + +I A
Sbjct: 162 HHGETTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYDSTVALIKALRHAAQATGAQ 221
Query: 174 ---------TGQG------------------------DTIRPGPQIDRISSAPAGGLTSL 200
G G PGP R S PAGGLT L
Sbjct: 222 PGGKGLVSGAGNGNASNEGAGDKLVNQQGRGYDFGGVKVPTPGPLSGRKSCEPAGGLTCL 281
Query: 201 LDNNSKKRGKKKKDDKI 217
+KD +
Sbjct: 282 TSEPWGNE-TLRKDGAL 297
>gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 262
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F++++ + EV+ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 44 VHRNTPDNNPDIPFKFTKQNEAIITEVLKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 103
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + +
Sbjct: 104 EVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHL 162
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST-----G 175
K +DG ++ EVEC GACVNAPM+ I D YEDLTPE ++ ++ A G
Sbjct: 163 GIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETIKSLLTALKESVTDVG 222
Query: 176 Q-GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+ +PGP R + + GLT+L +
Sbjct: 223 KAAKVPKPGPLSGRDTCENSAGLTNLTSEPWGVEKTRS 260
>gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
[Nasonia vitripennis]
Length = 243
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 116/214 (54%), Gaps = 5/214 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E++ F F + + ++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTEQDNPNIPFEFDAANKKRIEAILKIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL ++ +RV E+ATFYT F P+G + HVQVC TPC LR + +++ + +
Sbjct: 93 KVAEILGVSNMRVYEVATFYTMFNRRPMG-KYHVQVCTCTPCWLRDSDSIMKAVKELTNC 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ + D S EVEC GAC NAPM+ + D YEDLTPE II+A G+ P
Sbjct: 152 EVGGNSPDNMFSISEVECLGACANAPMLQVNDDYYEDLTPETTATIINALKRGER--PAP 209
Query: 183 GPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GPQ +R ++ P GGLTSL K+ + D
Sbjct: 210 GPQCKNRYAAEPNGGLTSLTS-PPKEPSFGVRSD 242
>gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina
98AG31]
Length = 257
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 113/213 (53%), Gaps = 7/213 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R F F+ E I +PP ++AVIP+L AQ Q GW S + +
Sbjct: 44 VHRNTSYNNPDLPFEFTPEYMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSISVM 103
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA +LDM +RV E+ATFYT F PVG VQVC TTPCML G +++ ++
Sbjct: 104 NYVAKLLDMTPMRVYEVATFYTMFNREPVGE-HFVQVCTTTPCMLGGCGSSIIVDTIKDH 162
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + +D + EVEC GAC NAPMV I D YEDLTP+ +++I+D G+
Sbjct: 163 LGIQLGQTTADKKFTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGR--K 220
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
PGPQ R SS P GGLTSL + G+
Sbjct: 221 PSPGPQSSRKSSEPVGGLTSLSE-KPYGPGEHC 252
>gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
Length = 378
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 15/227 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 154 HRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNE 213
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ +
Sbjct: 214 VARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLG 272
Query: 122 Q-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---- 176
DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 273 VSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAE 332
Query: 177 ------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 333 NGTQPSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 378
>gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 245
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 6/215 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R +F F E+ E+IS YPP ++AVIPLL Q Q GW S + +
Sbjct: 33 VHRDTPYNNPKIAFEFDTENMKRAQEIISFYPPQYKKAAVIPLLDLGQRQNKGWTSISVM 92
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VAN+L M +RV E+ATFYT F P+G VQVC TTPCMLRG +++ + +
Sbjct: 93 NYVANLLGMPPMRVYEVATFYTMFNREPIGE-NFVQVCTTTPCMLRGSPEILNTVCDHLG 151
Query: 122 -QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
KP SDG + EVECQGAC NAPM+++G D YEDLTPE ++I+ AF+ GQ
Sbjct: 152 GIKPGQTTSDGKFTVVEVECQGACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQ--KP 209
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R +S + GLTSL G+ + +
Sbjct: 210 KAGPQSGRRTSENSAGLTSLTT-KPYGPGEFCQPE 243
>gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial [Harpegnathos saltator]
Length = 216
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R +E + F F+E + + +++ YP + A+IPLL AQ Q GW+ +A+
Sbjct: 7 HRDSEHDNPNIPFEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 66
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA ILD+ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++E + +
Sbjct: 67 VAEILDLPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKATNCE 125
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
++D + EVEC GAC NAPM + D YEDLTPE II+AF G+ G
Sbjct: 126 IGATSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFKKGERPP--AG 183
Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PQ R ++ PAGGLTSL G + D
Sbjct: 184 PQNSTRFAADPAGGLTSLTTPPPG-PGFGIRSD 215
>gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
Length = 221
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 105/221 (47%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSVRRLA+E QP SF+F+++S + +++YP ++ SAVIP+L AQ+QEGWVS A
Sbjct: 1 MSVRRLAKE--QPESFAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A L+M YIRV E+ATFYT F L PVGT +QVCGTTPCMLRG +LI+VC+ +I
Sbjct: 59 IRDIAGRLEMPYIRVYEVATFYTMFNLEPVGT-HLIQVCGTTPCMLRGSGELIDVCKKRI 117
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTGQ 176
K ++DG +W EVEC GAC NAPM+ + G EDL +LE ++D + G+
Sbjct: 118 G-KQHEISADGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAGK 176
Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
I+ GPQ +R +S P G T +L + S G + K K+
Sbjct: 177 Q--IKYGPQSERNASEPHG--TKVLTDPSLYDGSRAKKIKL 213
>gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella
graminicola M1.001]
Length = 263
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 12/215 (5%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F FS+E+ ++E++ RYPP ++AV+P+L Q Q G+ S + +
Sbjct: 42 VHRDSPKNNADIPFKFSKENEAVIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMN 101
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M RV E+A+FYT + +PVG + +Q C TTPC L G + +++ + +
Sbjct: 102 EVARLLEMPPQRVYEVASFYTMYNRTPVG-KYFIQACTTTPCQLGGVGSDVIVKAIIDHL 160
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD-- 178
K DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 161 GIKQGETTKDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPETTVQLLDALKATATATG 220
Query: 179 ------TIRPGPQI-DRISSAPAGGLTSLLDNNSK 206
+PGP R + + GLT+L
Sbjct: 221 GAAAAQVPKPGPINSGRQTCENSKGLTNLTSEPWG 255
>gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 260
Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 10/219 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R ++ F F+E++ + E++ +YPP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRNTKDNNPELPFKFNEKNQAVIAEILKKYPPQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + +PVG + VQ+C TTPC L G + +++ +N +
Sbjct: 101 EVARLLEMPPMRVYEVASFYTMYNRTPVG-KFFVQICTTTPCQLGGCGSDVIVKAIKNHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179
K +DG + EVEC GACVNAPM+ I D YEDLTPE + +++ A T
Sbjct: 160 GIKQGETTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATATD 219
Query: 180 ------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGP R + + G T+LL +
Sbjct: 220 PSTVSVPKPGPLSGRSTCENSAGQTNLLAEPWGTETTRS 258
>gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
flavus NRRL3357]
gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae]
gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
flavus NRRL3357]
Length = 270
Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 84/227 (37%), Positives = 122/227 (53%), Gaps = 11/227 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R F+F+E++ ++E++ RYPP ++AV+PLL Q Q G+ S +
Sbjct: 39 LSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E +
Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
+ P H DG + EVEC GACVNAPMV I D YEDLTPE ++ ++ A
Sbjct: 158 HLGITPGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATA 217
Query: 174 --TGQGD-TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
G+ PGP R + + GLT+L + +KD +
Sbjct: 218 TDAGKTVQIPAPGPMSGRNTCENSAGLTNLKNPVWDPETMMRKDGAL 264
>gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Phytophthora infestans T30-4]
gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Phytophthora infestans T30-4]
Length = 271
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 81/216 (37%), Positives = 115/216 (53%), Gaps = 5/216 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R E+ + F F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+
Sbjct: 39 HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I+D I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ + N +
Sbjct: 99 KVARIVDAKPIQVYEVATFYTMFNREKVG-KYFIQLCGTTPCMICGSEEIKKTIENHLGI 157
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
K DG + EVEC GAC NAPMV I D YE+LT E E++DA + +
Sbjct: 158 KEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTAETTRELLDACKNDAPPLMNK 217
Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
G P ++S G T+L + G + + D
Sbjct: 218 WGSLPMNGQLSCEGPQGKTTLKWDKVPGPGFRMRPD 253
>gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
1704]
gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
1704]
Length = 264
Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 13/228 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
++V R + E F F+E++ ++E++ RYPP ++AV+PLL Q Q GW S +
Sbjct: 39 LAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E
Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157
Query: 119 KIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST--- 174
+ D + EVEC GACVNAPMV I + YEDLTP+ ++++A
Sbjct: 158 HLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQINDEYYEDLTPDTAVQLLEALKESAL 217
Query: 175 -----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ PGP R S + GLT+L + D ++
Sbjct: 218 AGESGKKVKVPAPGPLSGRHSCENSAGLTNLTS-PLWSTETLRTDGEL 264
>gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
Length = 294
Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats.
Identities = 84/256 (32%), Positives = 115/256 (44%), Gaps = 43/256 (16%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E F F+ ++ + E++SRYP ++AV+PLL Q Q G+ S + +
Sbjct: 41 VHRDTPENNANIPFEFTAQNKELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M +RV E+ATFYT + +P G + HVQ+C TTPCMLR + +++ C + +
Sbjct: 101 EVARILEMPPMRVYEVATFYTMYNRNPTG-KFHVQICTTTPCMLRDSDAVMKACEDTLGI 159
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS--------- 173
DG + EVEC GAC NAPMV I D YEDLT E ++ A
Sbjct: 160 HHGQTTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYESTVSLLKALRHASEATGAN 219
Query: 174 --------------------------------TGQGDTIRPGPQIDRISSAPAGGLTSLL 201
G PGP R S PAGGLT L
Sbjct: 220 LGGADGLNTKGNNASPNSAGEDAINRQGRSIEAGNLKIPSPGPLSGRKSCEPAGGLTCLT 279
Query: 202 DNNSKKRGKKKKDDKI 217
+KD ++
Sbjct: 280 GEPWGNE-TLRKDGEL 294
>gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 222
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 100/203 (49%), Positives = 127/203 (62%), Gaps = 7/203 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS RRLAE QP SF+F+ ES ++++YP R SAVI LL +AQ+Q W+ R
Sbjct: 1 MSNRRLAE--IQPDSFAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRP 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AIE VA++L M YIRVLE+ATFYT F L PVG +Q CGTTPC++ G + + V +
Sbjct: 59 AIEKVADMLHMPYIRVLEVATFYTMFNLEPVGRYY-IQFCGTTPCLIAGSDDIKAVLEKR 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + SDG SW+EVEC GAC NAPMV I D YEDLTPE ++D + G+
Sbjct: 118 VGPE-GQVTSDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGR--P 174
Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
+R G QI R SS GGLT+L
Sbjct: 175 VRIGSQIGRTSSEMHGGLTALTT 197
>gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
Length = 236
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E + F F+ E+ + ++S+YPP A+IP+L AQ Q GW+ +A+
Sbjct: 27 VHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLAQRQHGWLPISAMH 86
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+
Sbjct: 87 EVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKLGI 145
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K SDG + EVEC GACVNAPMV I D YEDLTP+ + +I+D F G+ +P
Sbjct: 146 KVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTPKDISDILDEFKAGKR--PKP 203
Query: 183 GPQIDRISSAPAGG 196
GP+ R ++ P G
Sbjct: 204 GPRSGRTAAEPISG 217
>gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
Length = 346
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 10/222 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS RR+A E QP SF+F+E+S V +++YP R SAVIPLL AQ+Q+ WVS A
Sbjct: 1 MSARRIAAE--QPESFAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A M YIRV E+ATFYT F L G + +QVCGTTPC LRG + L VC KI
Sbjct: 59 MREIAARCGMPYIRVYEVATFYTMFNLEQTG-KHLIQVCGTTPCWLRGADDLKAVCEKKI 117
Query: 121 HQKPL-HRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175
+K H +SDG L+WEEVEC GAC NAPMV I G YEDLT E LE+++D G
Sbjct: 118 GKKGREHVSSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAG 177
Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ ++ GP R S P L + S G + K K+
Sbjct: 178 K--EVKAGPISGRSCSEPTQATVKTLVDESLYDGSRAKKIKL 217
>gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 246
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S +
Sbjct: 27 ISVHRETKEDNTTLPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + +
Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNIQVCTTTPCQLCGSDGIMDAIKGYL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG----Q 176
KP D + +EVEC GACVNAPM+ + D +EDLTPE +++ G +
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVNDDYHEDLTPEATVDLLKKLKEGGDNFE 205
Query: 177 GDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
I GP R S P G LL K + D
Sbjct: 206 LSEIGVGPVLNKRESCEPFSGQKVLLSKEPNDMRKFTRAD 245
>gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor
[Metarhizium acridum CQMa 102]
Length = 259
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+ R + F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + +
Sbjct: 41 IHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + +
Sbjct: 101 EVARLLEMPPMRVYEVASFYTMYNRNPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------T 174
K +DG ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A +
Sbjct: 160 GIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGDAS 219
Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGP R + + G T+LLD +
Sbjct: 220 AAAKVPKPGPLTGRDTCENSKGQTNLLDEPWGVEKTRS 257
>gi|145612669|ref|XP_367376.2| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Magnaporthe oryzae 70-15]
gi|145019806|gb|EDK04034.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor [Magnaporthe oryzae 70-15]
Length = 257
Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F FS ++ + EV+ RYPP ++AV+PLL Q Q G+ S + +
Sbjct: 45 VHRNTPDNNPDIPFKFSAQNEKVITEVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISVMN 104
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + ++
Sbjct: 105 EVARILEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDAIVKAIKEEL 163
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
DG ++ EVEC GACVNAPM+ I D YEDLTPE + ++
Sbjct: 164 GISQGQTTPDGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETTKSLLAGLKDPSKAVP 223
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
GP R S +GGLT+L +
Sbjct: 224 PAGPLSGRHSCEHSGGLTNLTSEPWGIETTRS 255
>gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
gi|108878789|gb|EAT43014.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
Length = 207
Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 83/192 (43%), Positives = 111/192 (57%), Gaps = 4/192 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
VN +++ YP + A+IPLL AQ Q GW+ +A+ VA+IL + +RV E+ATFYT
Sbjct: 19 QRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYT 78
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P GT HVQVC TTPC LRG ++++ C+ K+ DG + EVEC GA
Sbjct: 79 MFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGA 137
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
CVNAPM+ + D YEDLT + EI+ G+ RPGP+ R +S P GGLTSL +
Sbjct: 138 CVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTE- 194
Query: 204 NSKKRGKKKKDD 215
K G +
Sbjct: 195 EPKGPGFGMQTG 206
>gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980]
gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 292
Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats.
Identities = 84/249 (33%), Positives = 116/249 (46%), Gaps = 41/249 (16%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E F F+ ++ V E++ RYPP ++AV+P+L Q Q G+ S + +
Sbjct: 41 VHRDTPENNASIPFKFTPQNEKLVEEILKRYPPQYKKAAVMPILDLGQRQHGFTSLSVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+ATFYT + +PVG + H+QVC TTPC L G + +++ +
Sbjct: 101 EVARLLEMPPMRVYEVATFYTMYNRNPVG-KYHLQVCTTTPCQLGGCGSDAIVKTIEQHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST------ 174
KP H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ A
Sbjct: 160 GIKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQASASDIA 219
Query: 175 ----GQG----------------------------DTIRPGPQIDRISSAPAGGLTSLLD 202
G+G PGP R + GLT+L
Sbjct: 220 GTEGGKGAITGDDKNVKSGAEVGEDSGKVYNKGGVKVPSPGPMSGRKTCENLNGLTNLTS 279
Query: 203 NNSKKRGKK 211
K K
Sbjct: 280 EPWSKEVFK 288
>gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
113480]
gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
113480]
Length = 263
Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 113/232 (48%), Gaps = 19/232 (8%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R F FS+E+ ++E++ RYPP + AV+PLL Q Q G+
Sbjct: 36 MSDVLHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKGAVMPLLDLGQRQHGYT 95
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
S + + VA +L+M +RV E+ATFYT + PVG + VQ+C T G +K+++
Sbjct: 96 SISVMNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTL--GGCGSDKIVKAI 152
Query: 117 RNKIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST- 174
+ DG + EVEC GACVNAPMV I D YEDLTPE +++DA
Sbjct: 153 TEHLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPETTIQLLDALKAS 212
Query: 175 ---------GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLTSL + +KD ++
Sbjct: 213 AVAAENGTQSNVKVPPPGPLSGRKTCENSAGLTSLTE-PLWGNETLRKDGEL 263
>gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium
anisopliae ARSEF 23]
Length = 305
Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 9/218 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+ R + F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + +
Sbjct: 87 LHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMN 146
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA +L+M +RV E+A+FYT + SPVG + VQ C TTPC L G + +++ + +
Sbjct: 147 EVARLLEMPPMRVYEVASFYTMYNRSPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHL 205
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------T 174
K +DG ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A +
Sbjct: 206 GIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGEAS 265
Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+PGP R + + G T+LLD +
Sbjct: 266 AAAKVPKPGPLTGRDTCENSKGQTNLLDEPWGVEKTRS 303
>gi|324507243|gb|ADY43075.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Ascaris suum]
Length = 280
Score = 211 bits (536), Expect = 8e-53, Method: Composition-based stats.
Identities = 77/194 (39%), Positives = 108/194 (55%), Gaps = 4/194 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + +++ YP +A+IP L AQ Q GW+ +A+ VA IL++ +RV E+ATF
Sbjct: 90 NLERIKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVATF 149
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
YT F PVG + +QVC TTPCMLRG E L E K+ K DG + EVEC
Sbjct: 150 YTMFNRQPVG-KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLFTLMEVECL 208
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201
GAC NAPM+ + D YEDLTP + +I+ G+ +PGP+ R+++ P GG TSL
Sbjct: 209 GACANAPMIQVNDDFYEDLTPSDMNDILSELKAGKR--PKPGPRSGRLAAEPHGGFTSLK 266
Query: 202 DNNSKKRGKKKKDD 215
+ G +
Sbjct: 267 S-PPRGPGFGIQPG 279
>gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14]
Length = 267
Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats.
Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 5/216 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R + + SSF F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+
Sbjct: 35 HRDTRDNTKESSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I+D+ I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ +
Sbjct: 95 KVARIVDVKPIQVYEVATFYTMFNREKVG-KFFIQLCGTTPCMICGSEEIKHTIEEHLGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
K DG + EVEC GAC NAPMV I D YE+LTPE +E+++A GQ + +
Sbjct: 154 KEGETTKDGMFTLREVECLGACANAPMVQINDDFYENLTPETTKELLEACKCGQPPKMSK 213
Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
G P ++S G TSLL + G + + D
Sbjct: 214 WGSLPLNGQLSCEGPQGKTSLLWDKHPPPGFRMRPD 249
>gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
CGDNIH1]
gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
CGDNIH1]
Length = 227
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 10/206 (4%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIE 62
E +QP+ FSF +S + ++++YPP+R SAV+PLL AQ Q G W+ RAA++
Sbjct: 13 EPWQPAEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAAMD 72
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A L MA IRV E+ATFY + PVG R H+Q+C TTPC LRG ++++ CR+
Sbjct: 73 EIARRLGMAPIRVYEVATFYFMYNTRPVG-RHHLQLCTTTPCWLRGSDEVVAACRSATGI 131
Query: 123 K-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
+ + DG + EVEC GACVNAP++ + D YED+ R +++A G+
Sbjct: 132 QGWGETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGER--PT 189
Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKK 207
PG R +SAP GG T+L D S
Sbjct: 190 PGSMSGRQNSAPEGGPTTLRDVPSAL 215
>gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
Length = 226
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 97/209 (46%), Positives = 129/209 (61%), Gaps = 14/209 (6%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANI 67
+F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ +E +A
Sbjct: 19 AFAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVPVMEYIARQ 78
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
LDM Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK K
Sbjct: 79 LDMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNKGLIK-GST 136
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ + GPQID
Sbjct: 137 TPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQ--PKIGPQID 194
Query: 188 RISSAPAGGLTSL---LDNNSKKRGKKKK 213
R +S P GG TSL +++N RG+
Sbjct: 195 RQTSCPEGGPTSLPEMVEDNHDYRGQWGA 223
>gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
Length = 297
Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats.
Identities = 86/257 (33%), Positives = 116/257 (45%), Gaps = 44/257 (17%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + +
Sbjct: 43 VHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMN 102
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M +RV E+ATFYT + PVG + HVQVC TTPCML + +++ C + +
Sbjct: 103 EVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLCDSDSVMKACEDVLGV 161
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS--------- 173
DG ++ EVEC GAC NAPMV I D YEDLT E ++ A
Sbjct: 162 HHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYESTVNLLKALKHAAQATGAQ 221
Query: 174 ---------TGQG------------------------DTIRPGPQIDRISSAPAGGLTSL 200
G+G PGP R S PAGGLT L
Sbjct: 222 PGDKGLASGAGKGTTTGEGAGDAVANAQGRQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 281
Query: 201 LDNNSKKRGKKKKDDKI 217
+KD +
Sbjct: 282 TSEPWGNE-TLRKDGAL 297
>gi|307293266|ref|ZP_07573112.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
chlorophenolicum L-1]
gi|306881332|gb|EFN12548.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
chlorophenolicum L-1]
Length = 222
Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats.
Identities = 94/208 (45%), Positives = 126/208 (60%), Gaps = 14/208 (6%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANI 67
+F+++ E+A +VI+RYP R QSAV+PLL AQ Q GW+ +E +A+
Sbjct: 19 AFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPVPVMEYIADQ 78
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK K
Sbjct: 79 LEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNKGLVKGG-T 136
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ + GPQI+
Sbjct: 137 TPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQ--PKIGPQIE 194
Query: 188 RISSAPAGGLTSLLD---NNSKKRGKKK 212
R +S P GG T+L + N RG
Sbjct: 195 RQTSCPEGGPTTLKEMVSGNHDYRGDWA 222
>gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum]
gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum]
Length = 244
Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats.
Identities = 79/216 (36%), Positives = 124/216 (57%), Gaps = 7/216 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
+S E+ + F F++E+ +++++YP QSA+IPLL AQ Q G W+S
Sbjct: 34 LSRHIETEDNNDHTPFDFNQENLKKAEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLK 93
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ VA+I + + E+A+FYT F + VG VQVC TTPCMLRG E++++ CR+
Sbjct: 94 AMDKVAHICGIPPMTAYEVASFYTMFNRTKVGQ-NFVQVCTTTPCMLRGSEEIVKACRSN 152
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + +D + EVEC GACVNAPM+ + D YEDLTPE ++++ + T
Sbjct: 153 LGIEVGETTADNKFTLVEVECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIKNNE--T 210
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R ++ G T+LL+ + G ++D
Sbjct: 211 TKIGPQTHRKAAEGPHGKTTLLEPPT---GPICRED 243
>gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1]
gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1]
Length = 229
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 94/206 (45%), Positives = 126/206 (61%), Gaps = 14/206 (6%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANIL 68
F+++ E+A ++I+RYPP R QSAV+PLL AQ Q +GW+ +E + L
Sbjct: 20 FAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPVPVMEYIGAQL 79
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
MAYIRV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + ++E C K K
Sbjct: 80 GMAYIRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVLEACYKK-GLKKGATT 137
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+DG + EVEC GAC NAPMV I D YEDLT + + ++D + G + GPQ++R
Sbjct: 138 ADGLFTLTEVECLGACANAPMVQINDDNYEDLTFDSMTAVLDTLAAG--GQPKIGPQVER 195
Query: 189 ISSAPAGGLTSLLD---NNSKKRGKK 211
+S P GG T+L + N RG+
Sbjct: 196 QTSCPEGGPTTLQEMVSENHDYRGRW 221
>gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500]
Length = 342
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
+S EE + F F+EE+ + V +++S+YPP+ QSA+IPLL AQ Q G W+S
Sbjct: 34 LSRHIETEENNDHTPFDFNEENMVKVEKILSKYPPAYRQSAMIPLLDLAQRQNGGWISLR 93
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ VA I+ + + E+A+FYT F + VQVC TTPCMLRG +++ C++
Sbjct: 94 AMDKVAEIIGVPPMEAYEVASFYTMFNR-TKIGKNFVQVCTTTPCMLRGSTAILDACKHH 152
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ D + EVEC GACVNAPM+ I D YEDLTP+ ++ +++ G+
Sbjct: 153 LKIGVGETTKDDVFTLAEVECLGACVNAPMICINDDFYEDLTPDSMKNLLNQIQNGK--E 210
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+ GPQ R ++ G T+LL+ S G +DD +S
Sbjct: 211 TKIGPQTHRKAAEGPQGKTTLLEQPS---GPFCRDDLMS 246
>gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
gi|74851521|sp|Q54F10|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial; Flags: Precursor
gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
Length = 247
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
+S E+ + + F F++E+ + V +++++YP QSA+IPLL AQ Q G W+S
Sbjct: 37 LSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLR 96
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ VA+I +A + E+A+FYT F + +G VQVC TTPCMLRG ++I+ C++
Sbjct: 97 AMDKVAHICGIAPMTAYEVASFYTMFNRTKIGE-NFVQVCTTTPCMLRGSGEIIKTCKSH 155
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + D + EVEC GACVNAPM+ I D YEDLT ++D +
Sbjct: 156 LGIQVGETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNK--P 213
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R ++ G T+LL+ G +DD
Sbjct: 214 TKIGPQTHRKAAEGPQGKTTLLEPP---VGPTCRDD 246
>gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii]
Length = 178
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R E + F F+ E+ V ++I YP +AVIP+L AQ Q GW+ +A+
Sbjct: 1 HRDTPENNPGTPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHE 60
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA IL+M+ IRV E+ATFYT F PVG + H+Q+C TTPCMLR + +++V +NK+
Sbjct: 61 VAGILEMSKIRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLRDSDGILDVIKNKLGIG 119
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
D + EVEC GACVNAPMV I + YEDLT + +EEIID + T + G
Sbjct: 120 VGETTKDNMFTLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR--TPKAG 177
Query: 184 P 184
P
Sbjct: 178 P 178
>gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
Length = 222
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/208 (46%), Positives = 128/208 (61%), Gaps = 14/208 (6%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANI 67
+F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ +E +A+
Sbjct: 19 AFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVPVMEYIADQ 78
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK K
Sbjct: 79 LEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNKGLVKGG-T 136
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ R GPQID
Sbjct: 137 TPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGKQ--PRIGPQID 194
Query: 188 RISSAPAGGLTSLLD---NNSKKRGKKK 212
R +S P GG T+L + N RG+
Sbjct: 195 RQTSCPEGGPTTLKEMVGENHDYRGEWA 222
>gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
Length = 223
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 4/201 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MS + +AE++ QP+SF+++ +S + ++++YP R SAV+PLL AQ Q W+ A
Sbjct: 1 MSSKPIAEDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLA 60
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI+ +A LDMA IRVLE+ATFYT + L+PVG + +Q C TTPC LRG ++++ ++K
Sbjct: 61 AIDAIAARLDMARIRVLEVATFYTMYNLAPVG-KWFLQACTTTPCWLRGSDQMMRCIKDK 119
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ R +DG S EVEC GACVNAP++ + D YED+ E +IDA G+
Sbjct: 120 LGLDNHGRTADGQFSLLEVECLGACVNAPILQVNDDFYEDMDYETTATLIDALKRGEPPV 179
Query: 180 IRPGPQIDRISSAPAGGLTSL 200
+ G R +S G TSL
Sbjct: 180 V--GSMKGRQTSQSIAGPTSL 198
>gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Erythrobacter sp. SD-21]
gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Erythrobacter sp. SD-21]
Length = 223
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 102/229 (44%), Positives = 133/229 (58%), Gaps = 23/229 (10%)
Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
M+ R A + P +F F+E ++ I+RYP R +SAV+PLL AQ Q
Sbjct: 1 MADRNPAPDT--PELRERWGAFEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVG 58
Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+GW+ IE VA+ LDM IRVLE+A+FY + + PVG + HVQVCGTTPCMLR
Sbjct: 59 EETDTQGWLPLPVIEYVADYLDMPVIRVLEVASFYFMYNMVPVG-KYHVQVCGTTPCMLR 117
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
G + L E C+ + K H + DG + EVEC G C APMV I D YEDLTPERL+E
Sbjct: 118 GSDGLFETCKKR-GMKKGHVSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDE 176
Query: 168 IIDAFSTGQGDTIRPGPQI-DRISSAPAGGLTSL---LDNNSKKRGKKK 212
I+D + G+ + G Q R +S PAGG T+L +D N RG+ K
Sbjct: 177 ILDELAAGKQ--PKSGTQEPGRHTSEPAGGPTTLKEMVDANHDYRGEWK 223
>gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
49814]
gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
49814]
Length = 366
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 105/214 (49%), Positives = 137/214 (64%), Gaps = 7/214 (3%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA 60
S+RR E SF+F E+ + +S+YP R +SAVIP+L AQ + +GW+S A
Sbjct: 3 SIRRFDIEAGG-ESFAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPA 61
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA+ L MAYIRV E+ATFYT F++ PVG H+QVCGTTPCMLRG + L++VC++KI
Sbjct: 62 MREVADRLGMAYIRVYEVATFYTMFRMQPVGE-FHIQVCGTTPCMLRGSDDLMKVCKSKI 120
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+K H ++G LSWEEVEC GACVNAPM I YEDL + ++D F G+
Sbjct: 121 GEK-GHVGANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKN--P 177
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
PG + DR +SAP GGLTSLLD + G K
Sbjct: 178 APGTRADRKNSAPEGGLTSLLD-ETLYDGSMAKP 210
>gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum]
Length = 249
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 80/216 (37%), Positives = 121/216 (56%), Gaps = 7/216 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
+S ++ + F F+EE+ V+ +IS+YPP QSA+IPLL AQ Q G W+S
Sbjct: 39 LSRHIDTDDNNDHTPFDFTEENMKKVDTIISKYPPKYRQSAMIPLLDLAQRQNGGWISLK 98
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ VA I+ +A + E+A+FYT F + VQVC TTPCMLRG ++ C++
Sbjct: 99 AMDKVAEIIGVAPMVAYEVASFYTMFNR-TKIGKNFVQVCTTTPCMLRGSTDILNACKHH 157
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
++ D + EVEC GACVNAPM+ I D YEDLTPE ++ ++ + +
Sbjct: 158 LNINVGETTKDEKFTLVEVECLGACVNAPMICINDDYYEDLTPETMKNLLTQIE--KSEP 215
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ GPQ R ++ G T+LL+ + G ++D
Sbjct: 216 TKVGPQNHRKAAEGPQGKTTLLEAPT---GPICRED 248
>gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
IMCC9063]
Length = 199
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 89/204 (43%), Positives = 125/204 (61%), Gaps = 6/204 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
MS + +A++ QP SF FS E+ + ++ +YP R +SAV+PLL AQ+Q GW+S A
Sbjct: 1 MSGKHVAKD--QPKSFIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLA 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A++ +A++L++ YI+V E+ATFYT + L+PVG + VQVC TTPC +RG K++E C+
Sbjct: 59 AVQYIADLLEVPYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCAIRGSGKIVEACKKY 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I H + D SW EVEC GACVNAPM+ I +D YEDL E+I +F
Sbjct: 118 ISSNEGHLSEDKKSSWIEVECLGACVNAPMIQINEDYYEDLDAISAEKIFKSFKDDN--L 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
+ G Q R S P +LL N
Sbjct: 176 PKLGSQKGRKGSEPIKQRLTLLKN 199
>gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
gi|150854112|gb|EDN29304.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
Length = 271
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 80/248 (32%), Positives = 114/248 (45%), Gaps = 41/248 (16%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R + F F+ ++ + E++ +YPP ++AV+P+L Q Q G+ S + +
Sbjct: 21 HRDTPDNNASIPFKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQHGFTSLSVMNE 80
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
VA +L+M +RV E+ATFYT + +PVG + HVQ C TTPC L G + +++ +
Sbjct: 81 VARLLEMPPMRVYEVATFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIEGHLG 139
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------- 173
KP H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ A
Sbjct: 140 IKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQSSASEIAN 199
Query: 174 --TGQG----------------------------DTIRPGPQIDRISSAPAGGLTSLLDN 203
G+G PGP R + GLT+L
Sbjct: 200 SEAGKGAITGEDANVKSGAEVGEDAGRIYNKGGVKVPSPGPMSGRKTCENIKGLTNLTSE 259
Query: 204 NSKKRGKK 211
K K
Sbjct: 260 PWSKEVFK 267
>gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
Length = 215
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 7/214 (3%)
Query: 1 MSVR-RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSR 58
MS+ R+AE+ QP+SF+F+ E+ + +I++YP R SAV+PLL AQ Q W+
Sbjct: 1 MSIEARIAED--QPNSFAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPM 58
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
AIE++A+ LDMA IRVLE+ATFYT F L PVG + +Q C TTPC LRG ++++ ++
Sbjct: 59 KAIELIADKLDMAKIRVLEVATFYTMFNLKPVG-KYFLQACTTTPCWLRGSDEMMRCIKD 117
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
+ + G S EVEC GACVNAP++ + D YEDL + ++D+ +
Sbjct: 118 RYGITSGQTSDCGRFSLLEVECLGACVNAPILQVNDDFYEDLNYQSTGALLDSLE--KDA 175
Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
+ G + R S +GG TSL KK K K
Sbjct: 176 PLAVGSVLGRSGSEASGGATSLNAIKPKKTAKAK 209
>gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis]
gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 204 bits (518), Expect = 9e-51, Method: Composition-based stats.
Identities = 77/184 (41%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R + F F+E + +++ YP ++AVIPLL AQ Q GW+ +A+
Sbjct: 16 VHRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAM 75
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA+ L+M +RV E+ATFYT F PVG + HVQVC TTPC LR + L++ ++K+
Sbjct: 76 NYVADFLNMPRMRVYEVATFYTMFNREPVG-KYHVQVCTTTPCQLRNADDLLDTLKSKLG 134
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
K + DG + VEC GACVNAPM+ I + YEDL+ + EEIID G+ T +
Sbjct: 135 IKEGETSKDGMFTLTVVECLGACVNAPMMQINDNYYEDLSMKDAEEIIDDLIAGR--TPK 192
Query: 182 PGPQ 185
PGP+
Sbjct: 193 PGPR 196
>gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC
15444]
gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC
15444]
Length = 257
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 104/212 (49%), Positives = 135/212 (63%), Gaps = 7/212 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRA 59
M++RR E SFSF E+ + ++YP + +SAVIP+L AQ + GW+S
Sbjct: 1 MALRRFDLEAGG-DSFSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEP 59
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A+ VA+ L+M Y+RV E+ATFYT F+L PVG + HVQ+CGTTPC LRG E L EVC +
Sbjct: 60 AMREVADRLEMPYMRVYEVATFYTMFRLQPVG-KFHVQLCGTTPCQLRGAENLKEVCTRE 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
I K ++ D LSWEEVEC GACVNAPMV I D YEDLTP+ L +II G
Sbjct: 119 IG-KQMYVTDDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNG--VE 175
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
+ PGPQIDR++SAP GG +L + + G +
Sbjct: 176 VTPGPQIDRVNSAPEGGNATLTE-PALFDGSR 206
>gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
Length = 238
Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/207 (55%), Positives = 141/207 (68%), Gaps = 4/207 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+RRL + QP+SF+F+ +A W I++YP R SA+IPLL RAQEQEGW++RAAIE
Sbjct: 2 LRRLHPD--QPASFAFTAANAAWAQLQIAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIE 59
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VAN+L+M +IR LE+ATFY FQL PVG AH+Q+CGT CML G E L+ VCR KI
Sbjct: 60 HVANMLEMPFIRALEVATFYFMFQLQPVGAVAHLQICGTLSCMLCGAEDLVSVCRQKIAA 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+P + DG LSWEEVEC GAC NAPM IGKD YEDLT E L ++IDA G D +P
Sbjct: 120 QPHSLSDDGKLSWEEVECLGACTNAPMAQIGKDYYEDLTAEGLSDLIDALRAG--DVPQP 177
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
GPQ R S+ P GG T L + K+
Sbjct: 178 GPQNGRFSAEPLGGATVLQNTPGDKQA 204
>gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
Length = 221
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 128/216 (59%), Gaps = 8/216 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ R + QP SF ++E++ W + I+++P R SAVIP L RAQ+QEGWVS A
Sbjct: 1 MADR--SPARQQPDSFQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPA 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+E +A L M YIRV E+ATFYT F L PVGT VQVCGTTPCMLRG E LIEVC I
Sbjct: 59 MEAIATQLGMPYIRVYEVATFYTMFNLKPVGT-YFVQVCGTTPCMLRGSESLIEVCERVI 117
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
G LSW EVEC GAC NAPM I Y+DLTPE+ EEI+ + +G+ +
Sbjct: 118 GP-QGAITESGHLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEIL--LTLDKGEAV 174
Query: 181 RPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
PG R +S P G T+L D S G K
Sbjct: 175 APGVFNPARHTSDPEGDNTTLTD-ESLYDGSAAKPI 209
>gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Erythrobacter litoralis HTCC2594]
gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
[Erythrobacter litoralis HTCC2594]
Length = 222
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 20/216 (9%)
Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
M+ R LA + P +F F+ + ++ I++YP R +SAV+PLL AQ Q
Sbjct: 1 MADRSLAADT--PELRERWGNFVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVG 58
Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+GW+ +E VA+ LDM IRV+E+ATFY + L PVG + HVQVCGTTPCMLR
Sbjct: 59 EETNTQGWLPLPVMEYVADYLDMPVIRVVEVATFYFMYNLQPVG-KYHVQVCGTTPCMLR 117
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
G +++I C+ + + ++DG + EVEC G C APMV I D YEDLTPERL+
Sbjct: 118 GSDEIIAACKKR-GMEKGRVSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDA 176
Query: 168 IIDAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLD 202
++DA + G+ + G Q R +S P GG T+L +
Sbjct: 177 VLDALAAGEQ--PKTGTQEPGRHTSEPLGGPTTLKE 210
>gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica]
Length = 238
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 10/219 (4%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEG-WVSRAA 60
V R +E F ++EE+ + + + ++YP +A ++P+L AQ Q G W+ +
Sbjct: 23 VHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLAQRQYGGWLPLSV 82
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
++ VA LD+ IRV E+ATFYT ++ PVG + H+Q+CGTTPCM+ G +K+ E
Sbjct: 83 MDAVAATLDVPPIRVYEVATFYTMYKRVPVG-KYHIQLCGTTPCMIGGCGAKKIKEAILE 141
Query: 119 K--IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ I SD S+EEVEC GACVNAPMV I D YEDLT + ++ I+ +
Sbjct: 142 EVGIGHHNDELTSDKMFSYEEVECLGACVNAPMVQINDDYYEDLTEQDMKTILRDLR--K 199
Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R GP+ R+SS P GG TSL + G +DD
Sbjct: 200 DGFSRKGPRNGRVSSEPLGGATSLTE-PPTGPGFGVRDD 237
>gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
ATCC 23769]
gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
ATCC 23769]
Length = 219
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
MS + + +P++F+F ES + +++++YPP R S VIPLL Q+Q G
Sbjct: 1 MSAQSNIPHDAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSA 60
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
WV R A++ VA+ L+MA IRV E+ATFY F P+G + H+QVC TT C LRG + +
Sbjct: 61 WVPRVAMDAVAHRLEMAPIRVYEVATFYLMFNTKPIG-KYHLQVCTTTSCWLRGSDDVTA 119
Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C+ ++DG + EVEC GAC NAP++ + D YED+ R E+I A
Sbjct: 120 ACKAATGIDAFGGTSADGMFTMTEVECLGACANAPILQVDDDYYEDMDGPRTTELIAALR 179
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
G+ + GP IDR+ SAP GG +LLD+ + +G +D+
Sbjct: 180 RGER--PKAGPTIDRMDSAPVGGRKTLLDS-AAGQGTGTQDN 218
>gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 222
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 23/228 (10%)
Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
M+ R E P SF+++ E+A E+++RYP R +SAV+PLL AQ Q
Sbjct: 1 MADR--HPEPVTPELVARWGSFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVG 58
Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+GW+ +E VA LDM IRVLE+ATFYT + + PVG R HVQVCGTTPCMLR
Sbjct: 59 AEENTQGWLPMPVMEYVARYLDMPIIRVLEVATFYTMYNIQPVG-RFHVQVCGTTPCMLR 117
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
G + ++ C + K H DG + EVEC G C +APMV I D YEDLT +RL
Sbjct: 118 GSDDILSACYAR-GLKKGHTTKDGLFTLTEVECMGNCSSAPMVQINDDNYEDLTADRLNF 176
Query: 168 IIDAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLL---DNNSKKRGKK 211
++D + G+ + G Q R + P GG TSL N RG+
Sbjct: 177 VLDELAAGRQ--PKAGTQEPGRHTVEPVGGPTSLTAMVTENHDYRGEW 222
>gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
Length = 261
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
S + + F F+EE+ VN+++S+YP + QS +IPLL AQ Q G W+ AA
Sbjct: 31 SFHINTPDNTPETYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAA 90
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++ VA I+ A RV E+A+FYT F + VG + +Q+CGTTPCM+ G E + + +
Sbjct: 91 MDKVAQIVGAAPSRVYEVASFYTMFNRTKVG-KYFIQLCGTTPCMICGSEDIKKTIEKHL 149
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K DG + EVEC GAC NAPM+ + D YE L + + E+++A G+ +
Sbjct: 150 GIKNGETTKDGMFTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAGKPPAM 209
Query: 181 -RPG--PQIDRISSAPAGGLTSLLDNNSKK 207
+ G P ++S G TSL + + K
Sbjct: 210 GKWGSLPMNGQVSCEGPLGKTSLFEVEAPK 239
>gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum]
Length = 263
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/255 (32%), Positives = 121/255 (47%), Gaps = 51/255 (20%)
Query: 1 MSVRR-----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW 55
MS RR + FSF+ ++ ++E++ RYPP ++AV+PLL Q Q G+
Sbjct: 1 MSQRRSSSCMNTPQNDPSIPFSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGF 60
Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
S + + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCML + +++
Sbjct: 61 ASISVMNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYHLQVCTTTPCMLCDSDSVMQA 119
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST- 174
+ KP + DG ++ EVEC GACVN PMV I D YEDLT E + ++++A
Sbjct: 120 VEKFLGVKPGNTTQDGIFTFSEVECLGACVNGPMVQINDDYYEDLTAESVTKLLEALKAT 179
Query: 175 -----------------------GQG---------------------DTIRPGPQIDRIS 190
G+G PGP R++
Sbjct: 180 ADSLPEQAVTWDAPAPTPTPGPKGEGIAGTDAESAIGKLLDKVVNGVRIPAPGPLSGRVT 239
Query: 191 SAPAGGLTSLLDNNS 205
PA LTSL +
Sbjct: 240 CEPASKLTSLTEPKW 254
>gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-01]
gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-01]
gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-03]
gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-07]
gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-22]
gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-26]
gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-32]
gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
3283-12]
Length = 213
Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 10/207 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
QP SF+F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A
Sbjct: 10 QPESFAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP- 124
+ L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR
Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
++DG + EVEC GAC NAP++ + D YED+ R E +I G+ GP
Sbjct: 129 GETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGR--KPEAGP 186
Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211
I+R+ SAP GG +LL+ ++ +K
Sbjct: 187 TINRMCSAPEGGRKTLLETSASSPDQK 213
>gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 243
Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats.
Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 18/226 (7%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
+S + + F+ + V E++S YP + QSAVIPLL AQ+Q+G W+
Sbjct: 20 LSSHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPLLDLAQQQQGGWLPVQ 79
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
A+ +A I+ A IRV E+ATFY+ F PVG R H+ VCGTTPCMLRG ++ +
Sbjct: 80 AMNRIAEIVGYAPIRVYEVATFYSMFNRQPVG-RYHLLVCGTTPCMLRGSREIEDALLKH 138
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
++ DG S EVEC G+CVNAPM+++ + YEDLT ER+ E++
Sbjct: 139 LNVARNEVTKDGLFSVGEVECMGSCVNAPMIVVADYSNGVEGYSYNYYEDLTTERVVELV 198
Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+ G+ + G Q +RI+ PAGG T+LL R +D
Sbjct: 199 EELRQGK--KPKWGTQHPERINCGPAGGNTTLLTEP---RAPACRD 239
>gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
sp. SXCC-1]
gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
sp. SXCC-1]
Length = 216
Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats.
Identities = 91/215 (42%), Positives = 126/215 (58%), Gaps = 10/215 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
MS + A E +P+ F F ++S + V+++YPP R S V+PLL Q+Q G
Sbjct: 1 MSAQPSAPEGAEPTHFEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
W+ R A++VVA L+MA IRV E+ATFY F P+G R H+QVC TT C LRG + +
Sbjct: 61 WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVTA 119
Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C+ K ++DG + EVEC GAC NAP++ + D YEDL R EE+I A
Sbjct: 120 ACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALK 179
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
G+ PGP IDR++SAPAGG L+ + ++K
Sbjct: 180 RGER--PTPGPTIDRLNSAPAGGRKVLVGDMAQKP 212
>gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
Length = 222
Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats.
Identities = 93/228 (40%), Positives = 127/228 (55%), Gaps = 23/228 (10%)
Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
M+ R A + P SF +S+E+ + I++YP R +SAV+ LL Q Q
Sbjct: 1 MADRTPAPDT--PELRARWGSFEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVG 58
Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+GW+ IE +A+ LDM IRVLE+ATFY + + PVG + HVQVCGTTPCMLR
Sbjct: 59 EETDTQGWLPLPVIEYIADYLDMPVIRVLEVATFYFMYNMKPVG-KYHVQVCGTTPCMLR 117
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
G + +I C+ + + DG + EVEC G C APMV I D YEDLT ERL+
Sbjct: 118 GSDDIISACKKR-GMGFGKVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDA 176
Query: 168 IIDAFSTGQGDTIRPGPQI-DRISSAPAGGLTSL---LDNNSKKRGKK 211
++DA + G+ + G Q R +S P+GG T+L +D N RG
Sbjct: 177 VLDALAAGEQ--PKTGTQEPGRHTSEPSGGPTTLKEMVDANHDYRGDW 222
>gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
Length = 271
Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats.
Identities = 87/225 (38%), Positives = 120/225 (53%), Gaps = 27/225 (12%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R FSF E ++IS+YPP ++AVIPLL AQ+Q WVS +A+
Sbjct: 42 VHRDTPYNNASIPFSFVGEYEQEAKDIISKYPPQYKKAAVIPLLHLAQKQNDNWVSISAM 101
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNK 119
VA++L+M +RV E+ATFYT F SPVG + VQVC TTPCML G ++E N
Sbjct: 102 NHVADVLEMPPMRVYEVATFYTMFNRSPVG-KFFVQVCTTTPCMLGGCGSTAVLEAIENH 160
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY---------------------E 158
+ K H D + EVEC GAC NAPM+ I + Y E
Sbjct: 161 LGIKAGHTTPDKMFTVIEVECLGACSNAPMIQINDEYYVRIFYNTHTHTHTSGSSNAEQE 220
Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
DLTPE + +++D + +G+ ++PGPQ R++SAP +L +
Sbjct: 221 DLTPESVVKVLDGLA--RGEHVKPGPQNGRLTSAPDNKNRTLTEE 263
>gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
albo-atrum VaMs.102]
gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
albo-atrum VaMs.102]
Length = 252
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F+ ++ + E++ RYPP ++AV+P+L Q Q G+ S + +
Sbjct: 41 VHRNTADNNVEIPFKFTPQNEAVIAELLKRYPPQYKKAAVMPVLDLGQRQHGFTSISVMN 100
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKI 120
VA IL+M +RV E+A+FYT + +PVG + +Q C TTPC L G + +++ +
Sbjct: 101 EVARILEMPPMRVYEVASFYTMYNRTPVG-KFFIQACTTTPCQLGGCGSDAIVKTIEEHL 159
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST------ 174
K +DG S+ EVEC GACVNAPMV I D YEDLTPE ++IDA
Sbjct: 160 GIKQGETTADGLFSYLEVECLGACVNAPMVQINDDYYEDLTPETTRQLIDALRASVSIVN 219
Query: 175 -----GQGDTIRPGPQI-DRISSAPAGGL 197
+PGP R + + G
Sbjct: 220 GEATVDHAKVPKPGPINSGRQTCENSAGP 248
>gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
siliculosus]
Length = 278
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 75/216 (34%), Positives = 120/216 (55%), Gaps = 6/216 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + + F F++E+ V +++++YP + Q+++IPLL AQ Q G W+ AA+E
Sbjct: 49 HKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWLPLAAME 108
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I+ ++V E+ATFYT F G + +Q+CGTTPCM+ G E + + +++
Sbjct: 109 KVAKIVGQHEMKVYEVATFYTMFNREKRG-KHFIQLCGTTPCMVCGSEDIKKTIMDELGI 167
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
K +DG + EVEC GAC NAPMV I D +E LTPE ++E+++ G+ + R
Sbjct: 168 KNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGR 227
Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
G P ++S G TSL + G + D
Sbjct: 228 WGSLPLNGQVSCEGPHGKTSL-EGTPTGPGFMMRKD 262
>gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 216
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G
Sbjct: 1 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 60
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++
Sbjct: 61 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 119
Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C+ ++DG + EVEC G C NAP++ + D YEDL R E+I+A
Sbjct: 120 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 179
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
+GD +PGP IDR+ +APAGG +L D+ + R +
Sbjct: 180 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 215
>gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
Length = 213
Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 10/207 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
QP SF F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A
Sbjct: 10 QPDSFVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP- 124
+ L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR
Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
+ DG + EVEC GAC NAP++ + D YED+ R E +I G+ GP
Sbjct: 129 GETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGR--HPEAGP 186
Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211
I+R+ SAP GG +LL+ ++ +K
Sbjct: 187 AINRMCSAPEGGRKTLLETSASSSDQK 213
>gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter
diazotrophicus PAl 5]
Length = 219
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G
Sbjct: 4 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 63
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++
Sbjct: 64 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 122
Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C+ ++DG + EVEC G C NAP++ + D YEDL R E+I+A
Sbjct: 123 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 182
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
+GD +PGP IDR+ +APAGG +L D+ + R +
Sbjct: 183 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 218
>gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium
bathyomarinum JL354]
Length = 222
Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 131/228 (57%), Gaps = 23/228 (10%)
Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
M+ R A + P +F+F+ + + ++RYP R +SAV+PLL AQ Q
Sbjct: 1 MADRTPAPDT--PELRERWGNFAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVG 58
Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+GW+ IE VAN LDM IRVLE+ATFY + ++PVG + HVQVCGTTPCMLR
Sbjct: 59 EETDTQGWLPLPVIEYVANYLDMPVIRVLEVATFYFMYNMTPVG-KYHVQVCGTTPCMLR 117
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
G + +I C+ + K + DG + EVEC G C APMV I D YEDLT ERL+
Sbjct: 118 GSDDIIAACKKR-GMKKGEVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDA 176
Query: 168 IIDAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLD---NNSKKRGKK 211
++DA + +G+ + G Q R +S P+GG T+L + N RG+
Sbjct: 177 VLDALA--KGEQPKTGTQEPGRHTSEPSGGPTTLKEMVTENHDYRGEW 222
>gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
Length = 254
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 81/218 (37%), Positives = 120/218 (55%), Gaps = 15/218 (6%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ +++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ +A+
Sbjct: 33 LHINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAM 92
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + +
Sbjct: 93 NKIAEIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLG 151
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
K DG S E+EC G CVNAPMV++ + YEDLTP+R+ EI++
Sbjct: 152 VKRNEVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEM 211
Query: 172 FSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
G+ + G Q RI PAGG T+LL +
Sbjct: 212 LRKGEKPPV--GTQNPTRIKCGPAGGNTTLLSDPKPPP 247
>gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
thermophila]
gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
thermophila SB210]
Length = 274
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 6/203 (2%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R ++ F F+ E+ + +++++YP + +SAV+PLL QEQ WV +A++
Sbjct: 30 HRKNDDNSDSVPFEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLSAMK 89
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A +L+M I V E+ATFYT + PVG + H+Q+CGTTPC L G ++ +
Sbjct: 90 KIAKLLEMPEIDVYEVATFYTMYNREPVG-KFHLQICGTTPCQLCGSREITKAIEEYTQT 148
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
K H ++DG + EEVEC GAC NAPM+ + YEDLT E + +++ +G T +
Sbjct: 149 KLGHTSADGKWTLEEVECLGACSNAPMIQVNNKWVYEDLTTENVVKLLKDLESG---TDK 205
Query: 182 PGPQIDRISSAPAGGLTSLLDNN 204
GPQ R G ++L + +
Sbjct: 206 KGPQNHRNQVEGPLGRSTLKEKD 228
>gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 275
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 18/220 (8%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
+ + F+ + V E++S YP + QSAVIP+L AQ+Q G W+S A+ +A
Sbjct: 58 TPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPMLDLAQQQNGGWLSVQAMNRIA 117
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
I+D A IRV E+ATFY+ F PVG + H+ VCGTTPCMLRG + + +H
Sbjct: 118 EIVDYAPIRVYEVATFYSMFNRQPVG-KYHLLVCGTTPCMLRGSRDIEDALLKHLHVARN 176
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTG 175
DG S E+EC G CVNAPM+++ + YEDLTPER+ E+++ G
Sbjct: 177 EVTKDGLFSVGEMECMGCCVNAPMIVVADYSNGVEGYSYNYYEDLTPERVVELVEELKQG 236
Query: 176 QGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+ + G Q RI+ PAGG T+LL + +D
Sbjct: 237 K--KPKWGTQHPKRINCGPAGGTTTLLSEP---QAPPCRD 271
>gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
RB2256]
gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
RB2256]
Length = 222
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/196 (44%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANI 67
+F+++ E+A VI+RYP R +SAV+PLL AQ Q +GW+ IE VA
Sbjct: 19 AFAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVPVIEYVAAQ 78
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
LDM +IR E+ATFYT + L+PVG R HVQVCGTTPC+LRG + + C+N+ K
Sbjct: 79 LDMPFIRAYEVATFYTMYNLAPVG-RYHVQVCGTTPCLLRGSDDVTAACKNRGMVK-GKT 136
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI- 186
DG + EVEC G C NAPMV I D YEDL + + I+D + G+ + G Q
Sbjct: 137 TPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGKQ--PKTGTQNP 194
Query: 187 DRISSAPAGGLTSLLD 202
R +S P GG T+L +
Sbjct: 195 RRHTSEPEGGPTTLKE 210
>gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis]
Length = 267
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 9/216 (4%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + F F+ E+ V+E++ RYP + QSAV+PLL AQ Q G ++ AA+
Sbjct: 35 HYDSPDNNVDTPFDFTAENYRRVHEIMKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M ++V E+ TFYT ++ VG + +Q CGTTPCML G E++ + ++
Sbjct: 95 KVAEILEMPPVKVYEVVTFYTMYRTEKVG-KFFIQACGTTPCMLCGSEEIFQTLEKELGI 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST-GQGDTI- 180
K DG S +VEC GAC NAPMV I D YE LTP+ E+++ G+ +
Sbjct: 154 KDGETTKDGMFSLLKVECLGACANAPMVQINDDYYECLTPKTTVELLNYIRKEGKLPPLN 213
Query: 181 RPG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+ G P + S G T+L + RGK ++
Sbjct: 214 KSGSKPMNGQESCEGINGQTTL---KGEIRGKYCRE 246
>gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia]
Length = 263
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 69/199 (34%), Positives = 115/199 (57%), Gaps = 6/199 (3%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S A++
Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLTAMK 83
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G +++ K++
Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSRDIMKAIEQKLNI 142
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
K ++DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T +
Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199
Query: 182 PGPQIDRISSAPAGGLTSL 200
GPQ R ++ G T+L
Sbjct: 200 KGPQNGRKNAEGPQGRTTL 218
>gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens]
Length = 265
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 5/204 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67
+ + ++F FS ++ + ++ +YP + S +IPLL AQ Q G W+ AA++ VA
Sbjct: 42 DNTKETTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLAAMDKVAKY 101
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
+ A +RV E+ATFYT F VGT +Q+CGTTPCM+ G E + + + + K
Sbjct: 102 VGCAPMRVYEVATFYTMFNREQVGT-YFIQLCGTTPCMVCGSEAIKKSIEDHLGIKEGET 160
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-RPG--P 184
+ DG + EVEC GAC NAPM+ + D YE LTP+ + +++A G+ + R G P
Sbjct: 161 SKDGLFTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGEPHAMGRWGSLP 220
Query: 185 QIDRISSAPAGGLTSLLDNNSKKR 208
++S G TSL +
Sbjct: 221 MNGQVSCEGPAGKTSLASAPGPQP 244
>gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
communis]
gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
communis]
Length = 255
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 119/217 (54%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
+ + + FSE++ V E+IS YP + QSAVIPLL AQ+Q GW+ +A++
Sbjct: 35 HIDSPDNNPNIPWEFSEKNKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMD 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + +
Sbjct: 95 AVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+D
Sbjct: 154 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVDML 213
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
G+ G Q RI S P GG T+L
Sbjct: 214 RRGEKPP--HGTQNPKRIKSGPEGGNTTLNGEPKPPP 248
>gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
Length = 245
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F++E+ V +++ YP + Q A++PLL AQ Q GW+ +A+ VA +L + ++
Sbjct: 43 KFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKIDPMQ 102
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E A +YT F + P G V VC +TPC LRG + L++ C + +P + D S
Sbjct: 103 AYETAKYYTMFHMKPRG-MYVVAVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKDMQFS 161
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
+ C GACVN P+V I D YEDLT LE I+ G+ GP R SS P
Sbjct: 162 LKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGK--VPPAGPYSGRCSSEPK 219
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
G T+LL + G K +D
Sbjct: 220 DGATTLLIDPPP-AGYKMQD 238
>gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
Length = 222
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 81/214 (37%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
+++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ +A+ +A
Sbjct: 5 SQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMNKIA 64
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + + K
Sbjct: 65 EIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGVKRN 123
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTG 175
DG S E+EC G CVNAPMV++ + YEDLTP+R+ EI++ G
Sbjct: 124 EVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEMLRKG 183
Query: 176 QGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+ + G Q RI PAGG T+LL +
Sbjct: 184 EKPPV--GTQNPTRIKCGPAGGNTTLLSDPKPPP 215
>gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
lyrata]
gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
lyrata]
Length = 255
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 15/213 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A+
Sbjct: 35 HLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + +
Sbjct: 95 AVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGV 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 154 KRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKL 213
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
+G+ G Q RI P GG T+LL
Sbjct: 214 R--KGEKPPHGTQNPKRIKCGPEGGNTTLLGEP 244
>gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia]
Length = 263
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 6/199 (3%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++
Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++
Sbjct: 84 KIAKILEIPEMDVYETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
K +DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T +
Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199
Query: 182 PGPQIDRISSAPAGGLTSL 200
GPQ R ++ G T+L
Sbjct: 200 KGPQNGRKNAEGPQGRTTL 218
>gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia]
Length = 263
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 70/199 (35%), Positives = 117/199 (58%), Gaps = 6/199 (3%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R ++ F F++E+ + ++S++P + +S IPLLM AQ+Q ++S +A++
Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ +++
Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKAIEQQLNI 142
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
K ++DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T +
Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199
Query: 182 PGPQIDRISSAPAGGLTSL 200
GPQ R ++ G T+L
Sbjct: 200 KGPQNGRKNAEGPQGRTTL 218
>gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 260
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 5/204 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
E F F+ E+ V ++++YP + Q+A+IPLL AQ Q G W+ A+
Sbjct: 31 FHIDTPENNLEVHFDFTLENYDRVKYIMAKYPNNYKQAAMIPLLDLAQRQHGGWLPLTAM 90
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA I ++A +RV E+A+FYT F +PVG + +Q+CGTTPCM+ G E + + +
Sbjct: 91 HKVAAICEVAPVRVYEVASFYTMFNRNPVG-KYFIQLCGTTPCMICGSEDIKQTIEKHLG 149
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI- 180
K DG + EVEC GAC NAPMV + D YE LTP+ ++++ G +
Sbjct: 150 IKNGETTKDGLFTLLEVECLGACANAPMVQLNDDYYECLTPDTTIALLESCKAGNPPAMG 209
Query: 181 RPG--PQIDRISSAPAGGLTSLLD 202
+ G P ++S G TSL +
Sbjct: 210 KWGSLPMNGQVSCEGPKGKTSLKE 233
>gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi]
gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi]
Length = 260
Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 12/221 (5%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
E + F FS ES + +++++YP QS ++PLL AQ Q G W+ AAI
Sbjct: 32 HVDTEYNNVNTPFDFSPESYAEIKKILAKYPSKHKQSGILPLLHLAQRQNGGWIPLAAIN 91
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I ++ V E +FYT F PVG + H+QVC TTPCM+ GC+ ++ +
Sbjct: 92 KIAEICEVNPRNVFECVSFYTMFNTQPVG-KYHIQVCITTPCMITGCDNILATLEQHLGI 150
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFS 173
K DG + E+EC G C NAPM+ + D +EDLT R EII+
Sbjct: 151 KLGETTQDGLFTLGEMECMGCCANAPMIAVSDYSNPPEFKYDYFEDLTAVRAIEIIEMLK 210
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q R + P GG +LL + ++
Sbjct: 211 KGEYPK-QIGSQNGRRYAEPLGGQKTLLFQDGDLPKPYCRE 250
>gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 277
Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + F++ + VNE++S YP + QS +IP+L AQ+Q G WV AA++
Sbjct: 57 HIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMD 116
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+ +A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + +
Sbjct: 117 AIAKIVGVAPIRVYEVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDIEDALLEHLGV 175
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ E+++
Sbjct: 176 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEML 235
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
G+ T G Q +R + PAGG+T+LL
Sbjct: 236 RRGE--TPPRGTQNPERKNCGPAGGMTTLLGEPKPPP 270
>gi|255644244|gb|ACU22686.1| unknown [Glycine max]
Length = 251
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + F+E + V E++S YP + QSA IPLL AQ+Q G W+ +A++
Sbjct: 31 HLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMD 90
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I+++ IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + E +
Sbjct: 91 AVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGV 149
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 150 KRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKL 209
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+ G Q RI S P GG T+LL
Sbjct: 210 R--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244
>gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
Length = 244
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
S + + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A
Sbjct: 22 SQHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSA 81
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + +
Sbjct: 82 MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 140
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 141 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 200
Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
+G+ G Q RI P GG +LL
Sbjct: 201 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 233
>gi|18411985|ref|NP_567244.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
[Arabidopsis thaliana]
gi|55584146|sp|O22769|NDUV2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
mitochondrial; Flags: Precursor
gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana]
gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana]
gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis
thaliana]
Length = 255
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 15/213 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A+
Sbjct: 35 HLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + +
Sbjct: 95 AVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGV 153
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 154 KRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKL 213
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
+G+ G Q RI P GG +LL
Sbjct: 214 R--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 244
>gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM
12444]
Length = 222
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 15/207 (7%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANIL 68
F ++ E+A ++++RYP R +SAV+PLL AQ Q +GW+ +E VA+ L
Sbjct: 20 FEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQGWLPIPVMEYVASYL 79
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
DM IRV+E+ATFYT + ++P+G R HVQVCGTTPCMLRG + ++ C+ K K H
Sbjct: 80 DMPVIRVVEVATFYTMYNIAPIG-RFHVQVCGTTPCMLRGSDDILAACKGK-GLKKGHTT 137
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-D 187
DG + EVEC G C +APMV I D YEDLT +E I+D + G+ + G Q+
Sbjct: 138 PDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELAEGKQ--PKTGTQLPG 195
Query: 188 RISSAPAGGLTSLL---DNNSKKRGKK 211
R + PAG L++L N RG+
Sbjct: 196 RHTVEPAGALSNLTAMVTENHDYRGEW 222
>gi|255627569|gb|ACU14129.1| unknown [Glycine max]
Length = 251
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + F+E + V E++S YP + QSA IPLL AQ+Q G W+ +A++
Sbjct: 31 HLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMD 90
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I+++ IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + E +
Sbjct: 91 AVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGV 149
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 150 KRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIVEKL 209
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+ G Q RI S P GG T+LL
Sbjct: 210 R--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244
>gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium
tetraurelia strain d4-2]
gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium
tetraurelia]
gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia]
Length = 263
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 6/199 (3%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++
Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEAILTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++
Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
K +DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T +
Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199
Query: 182 PGPQIDRISSAPAGGLTSL 200
GPQ R ++ G T+L
Sbjct: 200 KGPQNGRKNAEGPQGRTTL 218
>gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis]
Length = 253
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + F+E + V E+I+ YP + QSAVI LL AQ+Q G W+ +A+
Sbjct: 33 HLDSPDNNPNVPWEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVSAMN 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L+MA IRV E+ATFYT F + VG + H+ VCGTTPCM+RG + +
Sbjct: 93 KVAEVLEMAPIRVFEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSCDIEGAILKHLGV 151
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++
Sbjct: 152 KRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEML 211
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
G+ + G Q DRI + PAGG T+LL
Sbjct: 212 RRGETPPV--GTQNPDRIMAGPAGGNTTLLSEPKPPP 246
>gi|225437209|ref|XP_002281655.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ +A++
Sbjct: 34 HLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMD 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + +
Sbjct: 94 AVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++
Sbjct: 153 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEML 212
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ G Q R P GG T+LL + +D
Sbjct: 213 RRGEKPP--HGTQNPQRTRCGPEGGNTTLLGEP---KAPPCRD 250
>gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae]
gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae]
Length = 236
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F+EE+ V ++ YP + + A+IPLL AQ Q+GW+S +A++ VA+++ + ++
Sbjct: 36 EFKFTEENKRRVKALLVWYPEAEWKGALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMK 95
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E A FYT F + P G + ++VC +TPC LRG + + +C + K + D +
Sbjct: 96 AYEAAQFYTMFFMKPRG-KYVIRVCTSTPCKLRGGDDIYALCETILKLKHGETSPDMQFT 154
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
++ C GACVNAP++ + D YEDL + +++I++ + GP+ R SS P
Sbjct: 155 LKDDYCLGACVNAPVLSVNDDFYEDLDEKSVKQILEDLKNDKLPPS--GPRNGRYSSEPK 212
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
GGLTSL + G ++
Sbjct: 213 GGLTSLKEPPPP-PGFMMQE 231
>gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
reinhardtii]
gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas
reinhardtii]
gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
reinhardtii]
Length = 282
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 90/235 (38%), Positives = 123/235 (52%), Gaps = 30/235 (12%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + E +SF FSE + VN++I+RYPP+ QSA+IP+L Q++ G W+S AA+
Sbjct: 50 IHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLSLAAM 109
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +LDMA IRV E+ATFYT F + HVQ+CGTTPC L+G +K+ E +
Sbjct: 110 NRVAKLLDMAPIRVYEVATFYTMFNR-TKIGKYHVQICGTTPCRLQGSQKIEEAITKHLG 168
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD----------TYEDLTPERLEEIIDA 171
DG + E+EC GACVNAPMV I YEDLTP+ + I+D
Sbjct: 169 IGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNILDT 228
Query: 172 FSTGQGDTIRPGPQIDRISSAPAG------------GLTSLLDNNSKKRGKKKKD 214
+G +PG Q R+ + PAG G T+L R +D
Sbjct: 229 IK--KGGKPKPGSQY-RLKAEPAGAVHGGEKWVPKDGETTLTGAP---RAPYCRD 277
>gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera]
Length = 243
Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats.
Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ +A++
Sbjct: 23 HLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMD 82
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + +
Sbjct: 83 AVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 141
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++
Sbjct: 142 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEML 201
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ G Q R P GG T+LL + +D
Sbjct: 202 RRGEKPP--HGTQNPQRTRCGPEGGNTTLLGEP---KAPPCRD 239
>gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa]
gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 80/214 (37%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
E + F+ + V E+IS YP + QSAVIPLL AQ+Q G W+ +A+ VA
Sbjct: 37 TPENNPDLPWEFTAANKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVA 96
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + + K
Sbjct: 97 KVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALVKHLGVKRN 155
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTG 175
DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++
Sbjct: 156 EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLR-- 213
Query: 176 QGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+ G Q R P GG T+L
Sbjct: 214 KGEKPPHGTQNPQRTKCGPEGGNTTLHGEPKPPP 247
>gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus
ovalis]
Length = 259
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 6/203 (2%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
E + F F+ E+ +N ++ RYP + +SAV+ LL AQ+Q G +++ AA+
Sbjct: 28 THHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLAAM 87
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA IL+M + V E+A FY+ F VG +Q+CGTTPC+L G +++ C + +
Sbjct: 88 NKVAKILEMTNLNVYEVAAFYSMFNREKVGKI-RLQICGTTPCLLCGARDIMKACEDHLG 146
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTI 180
K DG + EEVEC G C NAPM+ + + YEDLTPE + E+++ F +G+ I
Sbjct: 147 IKMGGTTKDGMFTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFR--KGEEI 204
Query: 181 RPGPQ-IDRISSAPAGGLTSLLD 202
+ GPQ R ++ G T+L D
Sbjct: 205 KAGPQTKGRKNAEGPLGRTTLND 227
>gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes
aegypti]
Length = 180
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
+IPLL AQ Q GW+ +A+ VA+IL + +RV E+ATFYT F P GT HVQVC T
Sbjct: 1 MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTT 59
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
TPC LRG ++++ C+ K+ DG + EVEC GACVNAPM+ + D YEDLT
Sbjct: 60 TPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLT 119
Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
+ EI+ G+ RPGP+ R +S P GGLTSL +
Sbjct: 120 AKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTEEPKG 162
>gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
nagariensis]
gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
nagariensis]
Length = 281
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 89/234 (38%), Positives = 118/234 (50%), Gaps = 29/234 (12%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V + E +F F+E + VNE+I+RYPP+ SA+IP+L AQ+Q GW+S AA+
Sbjct: 51 VHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLSLAAL 110
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +LDMA IRV E+ATFYT F + HV +CGTTPC L+G + + E +
Sbjct: 111 NRVAKVLDMAPIRVYEVATFYTMFNR-TKIGKYHVLICGTTPCRLQGAQGIEEAVTKHLG 169
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
DG + E+EC GACVNAPMV I YEDLTP + I+D
Sbjct: 170 IHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDLTPSDIVGILDT 229
Query: 172 FSTGQGDTIRPGPQIDRISSAPAG-----------GLTSLLDNNSKKRGKKKKD 214
+G +PG Q R + PAG G +L RG +D
Sbjct: 230 IK--KGGKPKPGSQH-RSKAEPAGAVVGDKWVPKDGTVTL---AGPLRGPYCRD 277
>gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group]
Length = 274
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+
Sbjct: 54 HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 113
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 114 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGV 172
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 173 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 232
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+T G Q +R + PAGG T+L
Sbjct: 233 K--RGETPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267
>gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group]
gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica
Group]
gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group]
gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 274
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+
Sbjct: 54 HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 113
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 114 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGV 172
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 173 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 232
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+T G Q +R + PAGG T+L
Sbjct: 233 K--RGETPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267
>gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group]
Length = 274
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+
Sbjct: 54 HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 113
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 114 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGV 172
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 173 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 232
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+T G Q +R + PAGG T+L
Sbjct: 233 K--RGETPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267
>gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa]
gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ + FS + V E++S YP + QSAVIPLL AQ+Q G W+ +A+
Sbjct: 34 HIDTADNNPDLPWEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMN 93
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA ++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + +
Sbjct: 94 AVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 152
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++
Sbjct: 153 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEML 212
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+ G Q RI P GG T+L
Sbjct: 213 R--KGEKPPHGTQNPKRIKCGPEGGNTTLHGEPKPPP 247
>gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis]
gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis]
Length = 247
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F+EE+ V E++ YP + A++PLL AQ Q GW+ AI+ VA +L +
Sbjct: 43 KFEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVAEVLKLEPFA 102
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V E+A FYT F + P+G + V+VC TTPC LRGC ++ +C + K + D +
Sbjct: 103 VWEVANFYTMFNMRPIG-KYRVKVCMTTPCQLRGCADVLRICEKTLDLKDGETSKDMEFT 161
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
C GACVN P++ + D YEDL + E+I+ G+ PGP+ R +S P
Sbjct: 162 LNTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGKLPP--PGPRSGRFASEPI 219
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
G TSLL G ++
Sbjct: 220 TGPTSLLMEAPP-AGFGMQE 238
>gi|226500344|ref|NP_001140609.1| hypothetical protein LOC100272681 [Zea mays]
gi|194700168|gb|ACF84168.1| unknown [Zea mays]
Length = 324
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++
Sbjct: 104 HLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMD 163
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 164 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGV 222
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 223 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 282
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+T G Q +R + PAGG T+L
Sbjct: 283 R--RGETPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 317
>gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis]
gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis]
Length = 246
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F EE+ +IS YP + A++PLL AQ Q GW+ AI+ VA +L +
Sbjct: 43 KFEFDEENKKRAEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVAEMLKLEPFV 102
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V E+A FYT F L P+G ++VC TTPC LRGC+++ C N + K + D +
Sbjct: 103 VWEVANFYTMFNLRPIG-MFRLKVCMTTPCRLRGCDEIWRTCENVLKLKDGETSKDMQFT 161
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
C GACVN P++ + D YEDL E+++ +G GP+ DR +S P
Sbjct: 162 LTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSG--IMPPAGPRRDRFASEPR 219
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
GLTSLL G ++
Sbjct: 220 SGLTSLLTEPP-SAGFGMQE 238
>gi|224028933|gb|ACN33542.1| unknown [Zea mays]
Length = 281
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++
Sbjct: 61 HLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMD 120
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 121 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGV 179
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 180 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 239
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
+G+T G Q +R + PAGG T+L
Sbjct: 240 R--RGETPPRGTQHPERKNCGPAGGNTTLQGEPKPPP 274
>gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
Length = 224
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 15/210 (7%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANI 67
+F++++E+ NE+++RYP R QS IP L AQ Q +GW+ IE VA
Sbjct: 19 NFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPVPVIEFVARQ 78
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L +AY+R+ E+ATFYT F L+PVG R HVQVCGTTPCMLRG + ++ C+NK K
Sbjct: 79 LGVAYMRIYEVATFYTMFNLAPVG-RYHVQVCGTTPCMLRGSDDVLAACKNKGLIK-GKT 136
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI- 186
DG + EVEC G C +APMV I D +EDL +R I++A + G+ + + G Q
Sbjct: 137 TPDGLFTLTEVECMGNCASAPMVQINDDNFEDLDYDRTVTILEALARGE--SPKTGTQEP 194
Query: 187 DRISSAPAGGLTSLL---DNNSKKRGKKKK 213
R + P GG T+L +N RG+
Sbjct: 195 GRHTVEPLGGPTTLTAMVGDNHDYRGEWGA 224
>gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 284
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 80/257 (31%), Positives = 107/257 (41%), Gaps = 57/257 (22%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + +
Sbjct: 43 VHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMN 102
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL+M +RV E+ATFYT + PVG + HVQVC T C + +
Sbjct: 103 EVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTT-------------ACEDVLGV 148
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS--------- 173
DG ++ EVEC GAC NAPMV I D YEDLT + ++ A
Sbjct: 149 HHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYDSTVNLLKALKHAAQATGAQ 208
Query: 174 ---------TGQG------------------------DTIRPGPQIDRISSAPAGGLTSL 200
G+G PGP R S PAGGLT L
Sbjct: 209 PGDKGLASGAGKGTATGEGAGDAVANAQARQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 268
Query: 201 LDNNSKKRGKKKKDDKI 217
+KD +
Sbjct: 269 TSEPWGNE-TLRKDGAL 284
>gi|254796983|ref|YP_003081820.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
Illinois]
gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
Illinois]
Length = 172
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
+R+A QP F FSEE++ V ++++YP SR +SA++PLL Q+Q W+ AA++
Sbjct: 3 KRIAHASIQPDKFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMD 62
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + I+V E+ +FY+ F +PVG + ++VC TTPC LRG + L + + ++
Sbjct: 63 HVAQLLGLPAIKVYEVVSFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLTKAAKRELGI 121
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
K H D S +EVEC GACVNAP+V I D +E+L + E++
Sbjct: 122 KVGHTTEDNKFSLDEVECLGACVNAPVVQINDDYFENLDEKSFLELLSRLK 172
>gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama]
gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str.
Miyayama]
Length = 181
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
+R+A QP F FSEE++ V ++++YP SR +SAV+PLL Q Q W+ AA++
Sbjct: 12 KRIAHASIQPDKFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMD 71
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + I+V E+A+FY+ F +PVG + ++VC TTPC LRG + LIE + ++
Sbjct: 72 HVAQLLGLPVIKVYEVASFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLIEAAKRELGI 130
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
K H+ D S +EVEC GACV+AP+V I D +E+L E++
Sbjct: 131 KVGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELLSRLK 181
>gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba]
gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba]
Length = 241
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA
Sbjct: 27 DATEMRKTLKFEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVA 86
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+ + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ +
Sbjct: 87 ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 145
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
D + +E C GACVNAP++ + D YEDL + L I+ + GP+
Sbjct: 146 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPP--AGPR 203
Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKK 213
R +S P GGLT+L G +
Sbjct: 204 NGRFASEPKGGLTTLKTEPPP-PGFMMQ 230
>gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 84/224 (37%), Positives = 115/224 (51%), Gaps = 18/224 (8%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
S R + F+E +A V E++ RYPP+ +SA+IPLL AQ+Q G ++S
Sbjct: 1 SQHRDTPTNNDALKWDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQV 60
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA IL++A IRV E+ATFY+ F PVG + HV VCGTTPCMLRG ++ +
Sbjct: 61 MNRVAEILEVAPIRVFEVATFYSMFNRQPVG-KYHVMVCGTTPCMLRGSREVNAALEQHL 119
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
K DG + E+EC G+CVNAPM+ + + YEDLTP ++
Sbjct: 120 GIKKFENTPDGMFTLGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADAVAVVK 179
Query: 171 AFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
A GQ R G Q R + P GG +L G +D
Sbjct: 180 ALKAGQ--KPRVGSQH-RDKAEPMGGQQTLTSEP---PGPYCRD 217
>gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays]
Length = 281
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 120/217 (55%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
+ E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++
Sbjct: 61 HLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMD 120
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E +
Sbjct: 121 AIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGV 179
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI++
Sbjct: 180 KRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEML 239
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
G+ T G Q +R + PAGG T+L
Sbjct: 240 RRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 274
>gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia]
gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia]
Length = 241
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA
Sbjct: 28 ATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAE 87
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+ + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ +
Sbjct: 88 NIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 146
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
D + +E C GACVNAP++ + D YEDL + L I+ + GP+
Sbjct: 147 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPP--AGPRN 204
Query: 187 DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
R +S P GGLT+L G +
Sbjct: 205 GRFASEPKGGLTTL-KIPPPPPGFMMQK 231
>gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans]
gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans]
Length = 238
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA
Sbjct: 25 ATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAE 84
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+ + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ +
Sbjct: 85 TIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQ 143
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
D + +E C GACVNAP++ + D YEDL + L +I+ + GP+
Sbjct: 144 TTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKILADLRNDKLPP--AGPRN 201
Query: 187 DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
R + P GGLT+L G +
Sbjct: 202 GRFACEPKGGLTTLKIKPPP-PGFMMQK 228
>gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster]
gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster]
gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster]
gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct]
Length = 238
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + +
Sbjct: 33 KFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPME 92
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D +
Sbjct: 93 AFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFT 151
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
+E C GACVNAP++ + D YEDL + L I+ + GP+ R +S P
Sbjct: 152 LKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPP--AGPRNGRFASEPK 209
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
GGLT+L G +
Sbjct: 210 GGLTTLKIQPPP-PGFMMQK 228
>gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 217
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 18/222 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
R E+ +SF E + V+E+++RYP + +SA+IPLL AQ Q G +S + +
Sbjct: 1 HRDTPEDNASLPWSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMN 60
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA I ++A IRV E+ATFY+ F +G V VCGTTPCMLRG + +
Sbjct: 61 HVAEICEVAPIRVYEVATFYSMFNRQKMGKLH-VMVCGTTPCMLRGARDIERALSEYMGV 119
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
+ DG + E+EC G CVNAPM+ + + YEDLTP+ + +
Sbjct: 120 EKFETTKDGMFTLGEMECMGCCVNAPMIAVADYRAGVEGYSYNYYEDLTPQSAVRVCEEL 179
Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + R G Q R + P G T+LL+ G + +D
Sbjct: 180 KAGK--SPRVGSQT-RDKAEPLPGQTTLLEPP---PGPQCRD 215
>gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi]
gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi]
Length = 248
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 4/203 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
S F F+ E+ E++S YP + + A++PLL AQ Q GW+ AI+ VA++L +
Sbjct: 42 TSKFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLEP 101
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V E+A+FYT F L+PVG + H++VC TTPC LRGC ++++ C +H K + D
Sbjct: 102 FAVWEVASFYTMFNLTPVG-KFHIKVCMTTPCQLRGCAQILQKCEELLHLKAGETSEDME 160
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
+ + C GACV+AP++ + D YEDL + +E I+ G GP+ R ++
Sbjct: 161 FTLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAGNVPPC--GPRKGRFANE 218
Query: 193 PAGGLTSLLDNNSKKRGKKKKDD 215
P+ G+T+L G +D
Sbjct: 219 PSSGVTTLFIEPPP-AGYGMQDI 240
>gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
AIU301]
gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
AIU301]
Length = 203
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 85/200 (42%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ------EGWVSRAAIEVVANIL 68
+FSF E S + +I++YP R SAV+PLL AQ Q WV R A++V+A L
Sbjct: 8 AFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMDVIAARL 67
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M +RV E+ATFYT F PVG + H+QVC TTPC LRG ++++ CR K +
Sbjct: 68 SMPPMRVYEVATFYTMFHTKPVG-KFHLQVCTTTPCWLRGSDEVMSACR-KAAEADGET- 124
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
S EEVEC G CVNAP+V + D YEDL R E +++ G D G I R
Sbjct: 125 ----FSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRAG--DVPPAGSTIGR 178
Query: 189 ISSAPAGGLTSLLDNNSKKR 208
+SAP GG T+L K
Sbjct: 179 QASAPEGGPTTLFGVGGTKP 198
>gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta]
gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta]
Length = 238
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + +
Sbjct: 33 KFEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPME 92
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D +
Sbjct: 93 AFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHGQTTPDMQFT 151
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
+E C GACVNAP++ + D YEDL + L I+ + GP+ R +S P
Sbjct: 152 LKEDYCMGACVNAPVLAVNDDMYEDLDEKSLASILADLRNDKLPP--AGPRNGRCASEPK 209
Query: 195 GGLTSLLDNNSKKRGKKKKD 214
GGLT+L G +
Sbjct: 210 GGLTTLKSEPPP-PGYMMQK 228
>gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus]
Length = 211
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 1/155 (0%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 50 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMN 109
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 110 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 168
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
K D + EVEC GACVNAPMV I + Y
Sbjct: 169 KVGETTPDKLFTLIEVECLGACVNAPMVQINDNYY 203
>gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
Length = 166
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +I
Sbjct: 6 EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D
Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ +EVEC GAC+NAP+V I D YE+LTPE++E II
Sbjct: 125 TLKEVECLGACINAPVVQINNDFYENLTPEKVENIIAEL 163
>gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 166
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
FSF+ E+ + I YP + SAV+PLL QEQ GWV A+ VA++L + +I
Sbjct: 6 EQFSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHI 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV E+A FYT + L PVG + ++VC TTPC L E+++ + K+ D
Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLF 124
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ +EVEC GACVNAP+V I D YE+LTPE++E II S
Sbjct: 125 TLKEVECFGACVNAPVVQINNDFYENLTPEKVESIIAELSN 165
>gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 166
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +I
Sbjct: 6 EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D
Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ +EVEC GACVNAP+V I D YE+LTPE++E II
Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITEL 163
>gi|190570998|ref|YP_001975356.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra
cautella]
Length = 166
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
FSF+ ++ + I YP R SAV+PLL QEQ GWV +A+ VA++L + +I
Sbjct: 6 EQFSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHI 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D
Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ +EVEC GACVNAP+V I D YE+LTPE++E II S+
Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIIAELSS 165
>gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
Length = 265
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
V R E+ +++F V+ ++ RYP + +SA+IPLL AQ+Q G ++ A +
Sbjct: 26 VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A++L++A IRV E+ATFY+ F +G V VCGTTPCMLRG ++ + +
Sbjct: 86 NHIADVLEVAPIRVYEVATFYSMFNRQKMGKLH-VMVCGTTPCMLRGSREIEKALEEWMG 144
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
K + GT + E+EC G CVNAPM+ + + YEDLTP+ ++ +A
Sbjct: 145 VKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEA 204
Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + R G QI R + P GLT+L + S G +D
Sbjct: 205 LKAGK--SPRVGSQI-RDKAEPIKGLTTLTGDPS---GPFSRD 241
>gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
[Oncorhynchus mykiss]
Length = 205
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/213 (33%), Positives = 101/213 (47%), Gaps = 43/213 (20%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R + + F F+ ++
Sbjct: 35 VHRDTPDNNPDTPFEFTVDNLK-------------------------------------- 56
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+
Sbjct: 57 -VAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGI 114
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ P
Sbjct: 115 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPP 172
Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
GP+ R S PAGGLTSL + G + D
Sbjct: 173 GPRNGRFSCEPAGGLTSLSEPPPG-PGFGVRAD 204
>gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C]
gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
gi|122990931|sp|Q1RJJ1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C]
gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
Length = 167
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++FSF +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y
Sbjct: 6 TNFSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+R E+ATFYT F L PVG +QVC TTPC LRG + +++ C+ K+ K D
Sbjct: 66 MRAYEVATFYTMFNLKPVGKNH-IQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
S E+EC GACVNAP+V I D YEDLTPE++E IID
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKLRND 167
>gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis]
Length = 293
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 82/204 (40%), Positives = 109/204 (53%), Gaps = 15/204 (7%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
R + F F++ + E+ISRYP + SAVIPLL AQ+Q GW+S AA+
Sbjct: 51 THRHEAHNNWDTEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGWLSLAAM 110
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
VA +LDM IRV E+ATFYT F S +G + HV VCGTTPCML+G + + + + +
Sbjct: 111 NRVAKVLDMPEIRVYEVATFYTMFNRSKMG-KYHVMVCGTTPCMLQGAKGIYKALKEHLG 169
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
DG + E+EC GACVNAPM+ + + YEDLTP IID
Sbjct: 170 IDYGQTTPDGMFTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYEDLTPADTLAIIDT 229
Query: 172 FSTGQGDTIRPGPQIDRISSAPAG 195
+G + G Q R + PAG
Sbjct: 230 LK--KGGKPKVGSQH-RSKAEPAG 250
>gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5]
gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5]
Length = 167
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/163 (46%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y
Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D
Sbjct: 66 IRAYEVATFYTMFNLKQVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++E+IID
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMEKIIDKLQND 167
>gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299]
gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299]
Length = 249
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 18/222 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIE 62
R + S+ F E + V++++ RYPP+ +SA+IPLL AQ+ +G++S A+
Sbjct: 7 HRDTPDNNDSLSWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMN 66
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L++A IRV E+ATFY+ F + VG + HV VCGTTPCMLRG + + + +
Sbjct: 67 RVAEMLEVAPIRVYEVATFYSMFNRTKVG-KYHVMVCGTTPCMLRGSRDIEKALSDYMGV 125
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
K DG + E+EC G CVNAPM+ + + YEDLTP ++ A
Sbjct: 126 KKFESTPDGVFTLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADAVAVVKAL 185
Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
GQ R G Q R + P GG T+L RG +D
Sbjct: 186 KAGQ--KPRVGSQH-RDKAEPMGGQTTLTGEP---RGPYCRD 221
>gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase, E subunit [Magnetococcus sp. MC-1]
gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus sp. MC-1]
Length = 170
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75
+FS+E+ V + +RYP + QSA++P+L AQ + G W+SRA+++ VA ++ +A IRV
Sbjct: 11 AFSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAELMGLAPIRV 70
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ATFYT + L PVG + HVQVC C L G + + E + ++ + DG +
Sbjct: 71 YEVATFYTMYNLKPVG-KHHVQVCTNISCWLCGSDGIGEAVKQRLEIEYGQTTEDGNFTL 129
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
EVEC GACVNAPM I D YE+LTPE +IID +
Sbjct: 130 SEVECLGACVNAPMFQINDDYYENLTPETAVKIIDELAN 168
>gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 269
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 17/220 (7%)
Query: 7 AEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVV 64
+ + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+ +
Sbjct: 43 TDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKI 102
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ +
Sbjct: 103 AKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRM 161
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTG 175
SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++ +G
Sbjct: 162 HGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRSG 221
Query: 176 QGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
+ + GPQ DR + PAGG TSLL G +D
Sbjct: 222 K--PFKIGPQRPDRKYAEPAGGRTSLLFKEP--PGPYCRD 257
>gi|190891290|ref|YP_001977832.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
CIAT 652]
Length = 339
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 127/172 (73%), Positives = 143/172 (83%)
Query: 47 MRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML 106
MRAQEQ+GWV+RAAIE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCML
Sbjct: 1 MRAQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCML 60
Query: 107 RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLE 166
RG E L+ VC++KIH P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLE
Sbjct: 61 RGSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLE 120
Query: 167 EIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
EIID F+ G G +I+PG QIDRI SAP GG TSL + K R + KK D S
Sbjct: 121 EIIDTFAAGNGASIKPGTQIDRIFSAPEGGPTSLTTDEPKARTRAKKADAES 172
>gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7]
gi|20139044|sp|Q92ID9|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7]
Length = 167
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y
Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D
Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT +++ +IID
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKLQND 167
>gi|322498104|emb|CBZ33179.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 273
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+
Sbjct: 40 HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
+ SDG ++ E+EC GACVNAPM+++ D EDLT E ++ ++++
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVESL 218
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TSLL G +D
Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEP--PGPYCRD 257
>gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa]
gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str.
Iowa]
Length = 167
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y
Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC L G + ++++C K+ K D
Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++ EIID
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQND 167
>gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5]
gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5]
Length = 167
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y
Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC LRG + +++VC K+ + D
Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++ IID
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGGIIDKLQND 167
>gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
Length = 167
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y
Sbjct: 6 TNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+R E+ATFYT F L VG + H+ VC TTPC LRG + ++++C+ K+ K D
Sbjct: 66 MRAYEVATFYTMFNLKRVG-KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ E+EC GACVNAP++ I D YEDLTPE++E++ID
Sbjct: 125 FTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLIDRLQN 166
>gi|146083233|ref|XP_001464685.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum
JPCM5]
gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
infantum JPCM5]
Length = 273
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+
Sbjct: 40 HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
+ SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TSLL G +D
Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEP--PGPYCRD 257
>gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
49957]
gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
49957]
Length = 218
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
MS E +P+SF+F ES + +++ RYP + S VIPLL AQ+Q G
Sbjct: 1 MSAPHSHHHE-EPASFAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSA 59
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
WV R A++ +A L MA IRV E+ATFY F P+G R H+QVCGTTPC LRG ++++
Sbjct: 60 WVPRVAMDTIAERLGMAPIRVYEVATFYFMFNTRPIG-RFHLQVCGTTPCWLRGSDEVLR 118
Query: 115 VCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C+ H K + DG + EVEC G CVNAP++ + D YED+ E ++++A
Sbjct: 119 ACKEHGHLKGYGDTSEDGLFTMTEVECLGGCVNAPILQVDDDYYEDMDYETTVQLLEALK 178
Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
G+ +PG R SAP GG ++LD K
Sbjct: 179 RGER--PKPGSMKGRQGSAPIGGPETVLDIPMDDAALK 214
>gi|157867454|ref|XP_001682281.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major
strain Friedlin]
gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
major strain Friedlin]
Length = 273
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+
Sbjct: 40 HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
+ SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TSLL G +D
Sbjct: 219 RGGK--PFKIGSQRLDRRYAEPAGGRTSLLFKEP--PGPYCRD 257
>gi|154335106|ref|XP_001563793.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 274
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + F+ S ++ E++ ++P R SA IPLL AQ+Q+G ++ A+
Sbjct: 40 HHNTDYDNTRIPWDFTTASYEKIHHEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAM 99
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++LIE + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELIERTMHYLN 158
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
+ SDG ++ E+EC GACVNAPM+++ D EDLT + ++ +++
Sbjct: 159 VRMHGTTSDGLITVGEMECLGACVNAPMLVVSDYSNPPNFSYDYVEDLTWDSIKTLVEDL 218
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + GPQ DR + PAGG TSLL G +D
Sbjct: 219 RGGK--PFKIGPQRPDRRCAEPAGGRTSLLFKEP--PGPYCRD 257
>gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
Length = 167
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y
Sbjct: 6 TNFTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ + D
Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++ EIID
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQND 167
>gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
Length = 167
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y
Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ D
Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKETTEDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++ +IID F
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGKIIDKFQND 167
>gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2]
gi|75536607|sp|Q4UM09|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2]
Length = 167
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y
Sbjct: 3 TNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 62
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+R E+ATFY+ F L VG + H+QVC TTPC L G + ++++C K+ K D
Sbjct: 63 MRAYEVATFYSMFNLKRVG-KYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQK 121
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDLT E++E++ID +S
Sbjct: 122 FTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYSND 164
>gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
18053]
gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
18053]
Length = 165
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P+ +F+ E V E+I+RYP R +SA++P+L AQEQ GW+S ++ VA IL++
Sbjct: 5 PNLVAFTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIEP 64
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ V E+ATFYT + L PVG + ++ C T PC L G E + + K+ + +DG
Sbjct: 65 VEVYEVATFYTMYHLDPVG-KHVIEYCRTGPCCLMGGEDVYGHLKKKLGIEAGETTADGK 123
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ +EVEC AC P+ I + Y +LT E++++II+
Sbjct: 124 FTLKEVECLAACGWGPVFQIREQFYMNLTNEKVDQIIEDL 163
>gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus]
gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus]
Length = 152
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 4/155 (2%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 1 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 59
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+
Sbjct: 60 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 117
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGP+ R PAGGLTSL + K G +
Sbjct: 118 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 151
>gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
2588]
gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
2588]
Length = 161
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
FSEE V E+I+RYP + +SA+IP+L AQE G W+S ++ VA++L + I V
Sbjct: 2 FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ATFY+ F L PVG R +VC T PCMLRG + +I+ + K+ DG + +
Sbjct: 62 EVATFYSMFNLQPVG-RYVFEVCQTGPCMLRGSDNIIDYIKKKLDIGVGQTTKDGLFTLK 120
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
VEC GAC APM+ +GK E LTPE+++ II+ +
Sbjct: 121 TVECLGACGYAPMMQLGKHYREHLTPEKVDAIIEECRS 158
>gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 164
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/163 (46%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
++F F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M
Sbjct: 2 NTNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEMP 61
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
Y+R E+ATFYT F L PVG + H+QVC TTPC LRG + ++++C K+ K D
Sbjct: 62 YMRAYEVATFYTMFNLKPVG-KYHIQVCTTTPCWLRGSDHIMKICEKKLGVKLKETTEDQ 120
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ E+EC GACVNAP++ I D YEDLT E++E IID
Sbjct: 121 KFTLSEIECLGACVNAPVIQINDDYYEDLTQEKMETIIDKLQN 163
>gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
35910]
gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
35910]
Length = 169
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
+ +F ES V+++I+RYP R +SA++P+L AQ++ G W+ ++ VA +L +
Sbjct: 3 ETIAFKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKP 62
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
I V E+ATFYT F + PVG + ++VC T PCM+ G EK+++ R K++ K DG
Sbjct: 63 IEVYEVATFYTMFNMKPVG-KYVLEVCRTGPCMVCGSEKILDHIRTKLNIKDGETTEDGM 121
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ + EC GAC APM+ +GK +E+LT E+++EI+D GQ
Sbjct: 122 FTLKPAECLGACGYAPMMQLGKFFHENLTIEKVDEILDLCRQGQ 165
>gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
Length = 180
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
F FS+E+ + I++YP R SAV+ LL AQ+Q G ++ +AI +A+ L M I
Sbjct: 15 EFKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSSAINYIADFLGMQLI 74
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+A FY+ + L V + VQVC TTPC L G + +++ C+ ++ SD
Sbjct: 75 HVYEVAKFYSMYNL-SVTGKYLVQVCRTTPCWLCGSDDVLKSCKELLNIGIGETTSDNLF 133
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ +EVEC GACVNAP+V I D YE LTP+++++I+ +
Sbjct: 134 TLKEVECLGACVNAPVVQINDDYYEKLTPDKMKDILLEIQKKEN 177
>gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer DSM 15868]
gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer DSM 15868]
gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer
RA-YM]
gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
anatipestifer RA-GD]
Length = 170
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75
+F E+ V+++I+RYP + +SA+IP+L AQ++ G W+S ++ VA +L++ I V
Sbjct: 7 AFKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILPIEV 66
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ATFYT F + PVG + ++VC T PCML G + +++ R ++ K DG +
Sbjct: 67 YEVATFYTMFNMKPVG-KYVLEVCRTGPCMLNGSDDILDHIRKTLNIKDGETTEDGLFTL 125
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ EC GAC APM+ +GK +E LT E+++EI++ G
Sbjct: 126 KPAECLGACGYAPMMQLGKFYHEHLTKEKVDEILELCRQG 165
>gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi]
Length = 169
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANIL 68
+ + F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L
Sbjct: 2 DQRSEKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M + V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ +
Sbjct: 62 GMRPVHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDEST 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
D + EVEC GACVNAP+V I +D YEDL E++ EI+
Sbjct: 121 KDNLFTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLK 165
>gi|222475163|ref|YP_002563579.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
Florida]
gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico]
gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia]
gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
Florida]
Length = 169
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L M
Sbjct: 6 EKFEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRP 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D
Sbjct: 66 VHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNL 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ EVEC GACVNAP+V I +D YEDL E++ EI+
Sbjct: 125 FTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLK 165
>gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries]
gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries]
gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
Length = 169
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANIL 68
+ + F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L
Sbjct: 2 DQRSEKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M + V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ +
Sbjct: 62 GMRPVHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDEST 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
D + EVEC GACVNAP+V I +D YEDL E++ EI+
Sbjct: 121 KDNLFTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLK 165
>gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas]
gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 181
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/178 (36%), Positives = 108/178 (60%), Gaps = 4/178 (2%)
Query: 1 MS-VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSR 58
MS +++ + E + +F F++++ N+ IS+YP R SAV+ LL AQ+Q G ++
Sbjct: 1 MSNIQKNSNEHY-TETFKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPL 59
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
+A+ +A+ L M I V E+A FY+ + LSP G + +QVC TTPC L G + +++ C+
Sbjct: 60 SAMNYIADFLGMRLIHVYEVAKFYSMYNLSPTG-KYLIQVCRTTPCWLCGSDDILKSCKE 118
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
++ SD + +EVEC GACVNAP++ I D YE LTP+++++I+ +
Sbjct: 119 LLNICVGETTSDNLFTLKEVECLGACVNAPVMQINDDYYEKLTPDKVKDILMEIQKKE 176
>gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
Length = 262
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A++L + V
Sbjct: 1 MAFSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFYT ++ PVG V VC C L G E + E + DG+++
Sbjct: 61 GAVATFYTMYKRHPVGD-YLVSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPDGSITL 119
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
E EC AC AP++ + + Y+ + P+ + I++ G+ G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGRRPAPTRG 167
>gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
strain CL Brener]
gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
[Trypanosoma cruzi]
Length = 261
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+
Sbjct: 28 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L++ ++
Sbjct: 88 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVQRTEAYLN 146
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+
Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TS+ +D
Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMP--YCRD 245
>gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ]
gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ]
Length = 171
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
SF F++ + + ISRYP R SAV+PLL Q+Q G +V R+AIE +A +L M
Sbjct: 7 ESFRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRP 66
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ V E+ FY+ + +PVG + VQVC TTPC LR + ++ C+ + + D
Sbjct: 67 VHVREVVEFYSMYNTAPVG-KYLVQVCKTTPCWLRRSDDVLNACKRVLCVRVGETTKDNL 125
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ EVEC GACVNAP+V I D YE+L E +E+I+ G
Sbjct: 126 FTLREVECLGACVNAPVVQINDDYYENLDAESMEKILLKLKEGN 169
>gi|269128609|ref|YP_003301979.1| NADH-quinone oxidoreductase subunit E [Thermomonospora curvata DSM
43183]
gi|268313567|gb|ACY99941.1| NADH-quinone oxidoreductase, E subunit [Thermomonospora curvata DSM
43183]
Length = 240
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 16 FSFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
++S E+ E+I+RYP + +SA++PLL Q +G ++ IE A L +
Sbjct: 1 MAYSPETRAQLERDAKEIIARYP--KPRSALLPLLHLVQSVDGHITSDGIEFCAEQLGIT 58
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+V +ATFYT ++ PVG HV VC T C + G +++ E + DG
Sbjct: 59 PAQVTGVATFYTMYKHKPVGE-YHVGVCINTLCAVMGGDQIWEELSEYLGVGHDEATEDG 117
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
+S E +EC AC AP+VM+ + ++++TPE+ ++++D G+ GP R+ +
Sbjct: 118 KISLERLECNAACDYAPVVMVNWEFFDNMTPEKAKQLVDDLRAGKEVAPTRGP--KRLCT 175
Query: 192 APAGGLTSLLDNNSKKRGKKKKDDK 216
L + G+ + +
Sbjct: 176 WKEASR-VLAGFPDGRAGEGVQAGE 199
>gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel]
gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel]
Length = 167
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
+SF F +++ +++ +YPP +SA++PLL AQ Q G W+S AIE VAN+L +AY
Sbjct: 6 TSFIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAY 65
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+R E+ATFYT F L P+G + H++VC TTPC LRG +I+ C K+ K D
Sbjct: 66 MRAYEVATFYTMFNLKPIG-KHHIKVCTTTPCWLRGSSDIIKTCEQKLGIKEQEVTKDQK 124
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
S E+EC GACVNAP+V I D YEDLT E++E I+D
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTQEKMENILDKLQN 166
>gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
strain CL Brener]
gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
[Trypanosoma cruzi]
Length = 261
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+
Sbjct: 28 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++
Sbjct: 88 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 146
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+
Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TS+ +D
Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMP--YCRD 245
>gi|322828601|gb|EFZ32337.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
[Trypanosoma cruzi]
Length = 257
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 17/223 (7%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+
Sbjct: 24 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 83
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++
Sbjct: 84 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 142
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+
Sbjct: 143 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 202
Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
G+ + G Q DR + PAGG TS+ +D
Sbjct: 203 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMP--YCRD 241
>gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132]
gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132]
Length = 161
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+ +F+E++ E+I+RYP R +SA++PLL AQEQ GWVS A ++ +A IL + +
Sbjct: 2 ENIAFTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPV 61
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+ATFYT F L PVG + ++ C T PC G E++ + + ++ SDG
Sbjct: 62 EVYEVATFYTMFHLEPVG-KHVIEYCRTGPCCTVGGEEVYDHLKERLGIASNQTTSDGLF 120
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ +EVEC AC P I + + L ++++IID
Sbjct: 121 TLKEVECLAACGWGPCFQIKEKFFMQLDKAKVDQIIDEL 159
>gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington]
gi|81390153|sp|Q68X20|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str.
Wilmington]
Length = 170
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/162 (43%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
+F+F +++ +I +YPP+ +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+
Sbjct: 9 TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYM 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
R E+ATFY+ F LSPVG + H+QVC TTPC LRG + ++++C K+ K D
Sbjct: 69 RAYEVATFYSMFNLSPVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQKF 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E+EC GACVNAP+V I D YEDL ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQYLND 169
>gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX]
gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca
YX]
Length = 239
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 18 FSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
FS E+ E+ISRYP +R SA++PLL Q +EG+VS I A L +
Sbjct: 11 FSGENRARLELDAKEIISRYPKAR--SALLPLLHLVQSEEGYVSNDGIAFCAEQLGLTTA 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFYT ++ PVG HV VC C + G +++ + + + DG +
Sbjct: 69 EVTAVATFYTMYKRRPVGE-YHVGVCTNPLCAVMGGDEIYSALKEHLGVENDGVTEDGKI 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DRIS 190
S E VEC AC AP+VMI + +++ TPE +++I+D G+ GP + +
Sbjct: 128 SLEHVECNAACDFAPVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTRGPNRLCTWKQA 187
Query: 191 SAPAGGLTSLLDNNSKKRGKKK 212
S G + G+
Sbjct: 188 SRVLAGFDDGRATEGPQAGEPS 209
>gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
TREU927]
gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
[Trypanosoma brucei]
gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
brucei gambiense DAL972]
Length = 273
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNE-VISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
+ + F+ S +N ++ ++P SR +SA+IPLL AQ Q+G ++ A+
Sbjct: 38 HHNTDTNNTRIPWDFTMASYEEINNVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAM 97
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++
Sbjct: 98 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 156
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
K DG ++ E++C GACVNAPM+++ D EDLT + ++E+I+
Sbjct: 157 VKMHGTTRDGLITLGEMQCLGACVNAPMLVVSDYSRPPHFSYDFVEDLTWDSVKELIENL 216
Query: 173 STGQGDTIRPGP-QIDRISSAPAGGLTSLLDNNSKKR 208
G+ + G + DR S PAGG TS+ K
Sbjct: 217 REGR--PFKVGTCREDRRWSEPAGGRTSIFMKEPPKP 251
>gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
Welgevonden]
gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
Welgevonden]
gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
Welgevonden]
gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
Welgevonden]
Length = 183
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA+ +A+ LDM I
Sbjct: 17 EFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPI 76
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+A FY+ + L V + VQVC TTPC L G E +++ C+ ++ + D
Sbjct: 77 HVYEVAKFYSMYNL-SVTGKYLVQVCRTTPCWLCGSENVLKACKEFLNIDVGNTTDDNLF 135
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ +EVEC GACVNAP+V I D YE L ++++ I+ + + I
Sbjct: 136 TLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILIEYKKKENTII 182
>gi|115618122|ref|XP_797683.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
2 [Strongylocentrotus purpuratus]
gi|115950060|ref|XP_001178877.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
2 [Strongylocentrotus purpuratus]
Length = 152
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 4/155 (2%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+
Sbjct: 1 MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 59
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T
Sbjct: 60 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 117
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGP+ R +S P GGLTSL+D G +DD
Sbjct: 118 KPGPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 151
>gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel]
gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
Gardel]
Length = 183
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA+ +A+ LDM I
Sbjct: 17 EFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPI 76
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+A FY+ + L V + VQVC TTPC L G + +++ C+ ++ + D
Sbjct: 77 HVYEVAKFYSMYNL-SVTGKYLVQVCRTTPCWLCGSDNVLKACKEFLNIDVGNTTDDNLF 135
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ +EVEC GACVNAP+V I D YE L ++++ I+ + +
Sbjct: 136 TLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILMEYKKKEN 179
>gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
3519-10]
gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
3519-10]
Length = 169
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
+ +F E+ V ++I RYP + +SA+IP+L AQ++ G W+ ++ VA++L +
Sbjct: 3 ETIAFQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKP 62
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
I V E+ATFYT F + PVG + ++VC T PCML G + +++ R ++ K +DG
Sbjct: 63 IEVYEVATFYTMFNMKPVG-KYVLEVCQTGPCMLSGSDGILQHIRETLNIKNGETTADGL 121
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ ++ EC GAC APM+ +GK +E LT E+++EI+ G
Sbjct: 122 FTLKQAECLGACGYAPMMQLGKFYHEHLTNEKVDEILQLCRQG 164
>gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
D-4968]
gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
D-4968]
gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
Length = 167
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ G+++ ++ +A+ LDM I V E+
Sbjct: 14 SAERIKEIDHWIAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEV 73
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
A+FYT ++ VG R + VC CML +++ K+ K DG + V
Sbjct: 74 ASFYTMYEHKQVG-RHLINVCTNISCMLCDSAAVVKHLEKKLDIKLGETTDDGRFTLRAV 132
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
EC GACVNAPM+ + KD +E LTPE ++++++ +
Sbjct: 133 ECLGACVNAPMMQVNKDYHEKLTPESIDKVLEQYQ 167
>gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum
S5]
gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum
S5]
Length = 161
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F+F+EE+ E++ RYP +S +P L AQ QEGWVS+ A+E +A L++
Sbjct: 5 KPFAFNEETERQFQELLKRYPI--KKSLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPVT 62
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+ATFYT + L PVG + H+Q+C T C LRG E+++ KI P H +DG
Sbjct: 63 DVYEVATFYTMYNLHPVG-KYHIQLCRTLSCDLRGKEEILRHIVGKIGITPGHTTADGRF 121
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
S +VEC G+C + PM+ + D +E+LTP+R+++I+D
Sbjct: 122 SLVQVECLGSCGSGPMMQLNDDYHENLTPQRVDQILDQL 160
>gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155]
gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str.
MC2 155]
Length = 245
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 4/182 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E ++I+RYP +R SA++PLL Q Q+G+++ A I A L + V +
Sbjct: 30 TESLRADAEQIIARYPDAR--SALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAV 87
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY+ ++ +P G V VC T C + G + ++E + + P DG ++ E V
Sbjct: 88 ATFYSMYRRTPTGD-YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTLEHV 146
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGL 197
EC AC AP+VM+ + Y++ TP +++D +G G R ++ GL
Sbjct: 147 ECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPPTRGSLCTFRETARTLAGL 206
Query: 198 TS 199
T
Sbjct: 207 TD 208
>gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
spiritivorum ATCC 33861]
Length = 171
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 5/173 (2%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA
Sbjct: 2 LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+ LD+ I V E+ATFYT + L P G + ++VC T PC L G EK++ N++ K
Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMTHIENRLGVKEG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQ 176
DG SW VEC AC P++ IG D YE+LT E ++++I+
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPDYTFYENLTEESVDKLINELKEKN 171
>gi|292493664|ref|YP_003529103.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
Nc4]
gi|291582259|gb|ADE16716.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
Nc4]
Length = 176
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S E ++ I++YP + QSAVIP L Q G +++ ++ VA L M I V E
Sbjct: 22 SAEVRQQIDHWIAKYPQEQKQSAVIPALHIVQAANGGYLTNELLDEVAEYLQMPPISVYE 81
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY+ F+L PVG R + VC C L G ++++ R ++ D + +E
Sbjct: 82 VATFYSMFELKPVG-RHKLSVCTNISCQLCGSDQVVAHLRKRLGIGFGETTPDRRFTIKE 140
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
VEC GAC APM+M+G+ +E+LTPE++++I++A
Sbjct: 141 VECLGACGGAPMMMVGQTYHENLTPEKIDQILEALK 176
>gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E]
gi|6647681|sp|Q9ZDH5|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii]
gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii Rp22]
Length = 177
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
+F+F +++ +I +YPP +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+
Sbjct: 9 TFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYM 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
R E+ATFYT F L + H+QVC TTPC LRG + ++++C K+ K D
Sbjct: 69 RAYEVATFYTMFNL-NPIGKYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQKF 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ E+EC GACVNAP+V I D YEDL ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQYLN 168
>gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
Length = 163
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75
FSE + +N++++RYP + +SA+IP+L AQE+ G W+ ++ VA +LD+ + V
Sbjct: 4 QFSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLPVEV 63
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+A+FYT FQL+PVG + +QVC T PCM++G + +I+ +NK++ DG +
Sbjct: 64 YEVASFYTMFQLNPVG-KYVLQVCQTGPCMIKGADHIIQHIKNKLNIDIGGTTEDGLFTL 122
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ VEC GAC APM+ +GK E LT E+++E+I+
Sbjct: 123 QTVECLGACGYAPMMQLGKTYREFLTTEKVDELIEELKK 161
>gi|296268277|ref|YP_003650909.1| NADH-quinone oxidoreductase subunit E [Thermobispora bispora DSM
43833]
gi|296091064|gb|ADG87016.1| NADH-quinone oxidoreductase, E subunit [Thermobispora bispora DSM
43833]
Length = 231
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+I+RYP + +SA++PLL Q ++G++S E A L + VL +ATFY
Sbjct: 12 EREAKEIIARYP--KPRSALLPLLHLVQSEDGYISDDGAEFCAEQLGLTKAEVLGVATFY 69
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P +V VC T C + G +++ E + DG ++ E +EC
Sbjct: 70 TMYKREP-AGEYNVGVCINTLCAVMGGDQIWETLTEHLGIGHNETTPDGKITLERLECNA 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---------------- 186
AC AP+V++ + +++ TPE + ++D G+G T GP+
Sbjct: 129 ACDYAPVVVVNWEFFDNQTPESAKRLVDDLRAGKGATPTRGPKRLCTFKEASRILAGFPD 188
Query: 187 DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
R P+ G SL K +
Sbjct: 189 GRAGEGPSAGEASLRGLRLAKANGWEAP 216
>gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis
DSM 1100]
gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 169
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
+ ++ +FS E V ++ RYP + +SA++P+L AQ+ GW+S ++ VA +LD+
Sbjct: 2 IETTNITFSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDI 61
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
+I V E+ATFYT F L PVG + ++VC T PCML G + +++ K+ + D
Sbjct: 62 QHIEVYEVATFYTMFHLKPVG-KNVLEVCRTGPCMLVGSDNIVKYLEQKLSIQDGETTPD 120
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
G + + VEC GAC PM+ +G+ +E L+ ER++++++ F
Sbjct: 121 GLFTIKTVECLGACGYGPMMQVGEKYHEFLSEERIDQLLEGFRQNATQP 169
>gi|254496125|ref|ZP_05109024.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
gi|254354666|gb|EET13302.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
Length = 167
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S + ++ I++YP + QSAV+ L QE+ ++ ++ +A+ L+M I V E+
Sbjct: 14 SAQRMQDIDHWIAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEV 73
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
A+FYT ++ PVGT V VC CMLR +++ + K+ K DG + V
Sbjct: 74 ASFYTMYEHKPVGT-HLVNVCTNISCMLRDSAGVVDHLQKKLGIKLGETTDDGRFTLRSV 132
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
EC GACVNAPM+ + KD +E+LTPE ++++++ +
Sbjct: 133 ECLGACVNAPMMQVDKDYHENLTPESIDKVLEQYQ 167
>gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
spiritivorum ATCC 33300]
gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
spiritivorum ATCC 33300]
Length = 171
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA
Sbjct: 2 LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+ LD+ I V E+ATFYT + L P G + ++VC T PC L G EK+++ N++ K
Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMDHIENRLGVKEG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
DG SW VEC AC P++ IG + YE+LT E ++++I+
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPEYTFYENLTVESVDQLINELKE 169
>gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 233
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+ISRYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++
Sbjct: 17 QEIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC
Sbjct: 77 RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA---GGLTSLLDN 203
AP++M+ + +++ TP+ +++D G GP G L +
Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPNRVPTFKENEHLLAGFEDGLAD 195
Query: 204 NSKKRG 209
G
Sbjct: 196 EGDSAG 201
>gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a]
gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
(NDH-1, chain E) [Frankia alni ACN14a]
Length = 257
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A+ L + V
Sbjct: 2 MAFSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEV 61
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFYT ++ PVG V VC C L G +++ ++ DG+++
Sbjct: 62 GAVATFYTMYKRRPVGD-YLVSVCTNLSCALLGGDEVFARVAERLGVGHDETTPDGSITL 120
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
E EC AC AP++ + + Y+ + P+ I++ G+ G
Sbjct: 121 EHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGERPAPTRG 168
>gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
Length = 192
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 5/172 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
FSFS E+ + ++I+ YP + SAV+ +L AQ Q W+S + IE VAN+L M YI
Sbjct: 8 EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V EIA+FYT F L PVG + H+Q+CGTTPC LRG + ++ C+ + + + D
Sbjct: 68 KVYEIASFYTMFNLQPVG-KYHIQICGTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRP 182
+ E EC GAC NAP+V I D YE+LT ++++EII+ + ++P
Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIKEIINNLHAKDLQKKSELKP 178
>gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
Length = 312
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 94/220 (42%), Gaps = 54/220 (24%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
+SV R F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S +
Sbjct: 136 LSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISV 195
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA +L+M +RV E+ATFYT + L
Sbjct: 196 MNEVARLLEMPPMRVYEVATFYTMYNL--------------------------------- 222
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---GQG 177
EC GACVNAPMV I D YEDLTPE ++ ++ A G
Sbjct: 223 ------------------ECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSA 264
Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
PGP R + + GLT+L D ++D +
Sbjct: 265 KVPAPGPLSGRQTCENSAGLTNLRDPVWDPETMMRQDGAL 304
>gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec]
gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec]
Length = 273
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E++ E+I+RYP R +SA++P+L Q ++G V+ +E A L + + V
Sbjct: 3 LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEVSA 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ PVG V VC C+LRG E++ E + DGT++ E
Sbjct: 63 VATFYTMYKRRPVGD-WLVSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTEDGTITLEH 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC AP++ + + Y+ + P+ EEI++A G+ G
Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGERPAPTRG 167
>gi|315654701|ref|ZP_07907607.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
51333]
gi|315491165|gb|EFU80784.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
51333]
Length = 233
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+I+RYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++
Sbjct: 17 REIIARYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC
Sbjct: 77 RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA---GGLTSLLDN 203
AP++M+ + +++ TP+ +++D G GP G L +
Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPNHVPTFKENEHLLAGFEDGLAD 195
Query: 204 NSKKRG 209
+ G
Sbjct: 196 EGESAG 201
>gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
Length = 184
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
FSFS ++ + ++I+ YP + SAV+ +L AQ Q W+S + IE VA +L M YI
Sbjct: 8 EFSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYI 67
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V EIA+FYT F L P+G + H+Q+C TTPC LRG + ++ C+ + + + D
Sbjct: 68 KVYEIASFYTMFNLQPIG-KYHIQICCTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRP 182
+ E EC GAC NAP+V I D YE+LT +++EEII+ + ++P
Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIEEIINNLHAKDLQKKSELKP 178
>gi|288917187|ref|ZP_06411556.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
gi|288351378|gb|EFC85586.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
Length = 242
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E++ E+I+RYP R +SA++P+L Q +EG V+ ++ A L + + V
Sbjct: 3 LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEEGAVTAEGVDFCAEQLGLTHAEVGA 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ PVG V VC C+LRG E + + + DGT++ E
Sbjct: 63 VATFYTMYKRRPVGD-WLVSVCTNLSCLLRGGEDVYKRLSANLGVGHDQTTEDGTITLEH 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC AP++ + + Y+ +TP+ E I+DA G+ G
Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVTPDSAEGIVDALRRGERPAPTRG 167
>gi|52842983|ref|YP_096782.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 167
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT +
Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVG R + VC CMLR ++E K+ DG + VEC GACV
Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
NAPM+ + KD +E+LT E ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167
>gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
Length = 174
Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
EE QP FS E +E++ RYP + +SA++P+L Q GW+S +A++ VA L
Sbjct: 5 EETQPV--EFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVAEYL 62
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
++ I V E+ATFYT + L P G + ++VC T PC L G EKL+ K+ +
Sbjct: 63 KISPIEVYEVATFYTMYFLKPQG-KFTLEVCRTGPCCLVGAEKLLNYIGEKLGVEEGEIT 121
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGD 178
DG S+ VEC AC P++ IG + YE+LT E ++++ID G
Sbjct: 122 PDGLFSYRGVECLAACGFGPVLQIGPEYTFYENLTIESVDKLIDDLKAKAGK 173
>gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205]
gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola
CNS-205]
Length = 305
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I A +L + +V
Sbjct: 4 FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FYT ++ P G V VC T C + G +++ + + +DGT++ E
Sbjct: 64 VASFYTMYKRRPTGD-WLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTADGTITLEH 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
EC AC P++ + D ++++ P+ ++D G T G ++ R
Sbjct: 123 AECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTPSRGARLCR 173
>gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b]
Length = 167
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FY
Sbjct: 18 MSDIDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFY 77
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ PVG R + VC CMLR ++E K+ DG + VEC G
Sbjct: 78 TMYEHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLG 136
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
ACVNAPM+ + KD +E+LT E ++++++ +
Sbjct: 137 ACVNAPMMQVDKDYHENLTAESIDKVLEQYQ 167
>gi|288942130|ref|YP_003444370.1| NADH-quinone oxidoreductase subunit E [Allochromatium vinosum DSM
180]
gi|288897502|gb|ADC63338.1| NADH-quinone oxidoreductase, E subunit [Allochromatium vinosum DSM
180]
Length = 175
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 1 MSVRRLAEEEFQ---PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WV 56
MS R A + + S FS E ++ I++YPP QSAV+P L Q+ G W+
Sbjct: 1 MSF-RNAPQAVEHDVDKSALFSPEIREAIDAHIAKYPPEWKQSAVMPALSIVQDANGGWL 59
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+ ++ VA LDM + V E+ATFY + L+P G R V VC + CML G E+LIE
Sbjct: 60 TTELMDDVAAYLDMPAVSVYEVATFYGMYDLTPQG-RHKVCVCNSISCMLNGSEELIEHV 118
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+K K SDG + +EVEC GAC +AP V++ K +E LTPE L+++ID
Sbjct: 119 EHKYGVKVGETTSDGRFTLKEVECLGACRDAPAVLLDKVYHEKLTPESLDKLIDGL 174
>gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
331]
gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
331]
Length = 174
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L
Sbjct: 2 NEQTEQFILDEAVIKEIDRWLAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ I V E+ATFY + L P+G + + +C PC LRG ++++ + ++
Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
SDG + + VEC AC APM I + +E+LTPE++ IID
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKL 165
>gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
japonicum]
Length = 157
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
+ VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ +
Sbjct: 1 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 59
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
+ +P D + EVEC GACVNAPM+ I D YEDLT E II G+
Sbjct: 60 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 117
Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+PGPQ R +S P GGLTSL + K G K + D
Sbjct: 118 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 156
>gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby]
gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby]
gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
Length = 167
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT +
Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVG R + VC CMLR ++E K+ DG + VEC GACV
Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
NAPM+ + KD +E+LT E ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167
>gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
5J108-111]
gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
334]
gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
5J108-111]
gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
334]
gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
Length = 174
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L
Sbjct: 2 NEQTEQFILDEAVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ I V E+ATFY + L P+G + + +C PC LRG ++++ + ++
Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
SDG + + VEC AC APM I + +E+LTPE++ IID
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKL 165
>gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
Length = 155
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FY
Sbjct: 6 MSDIDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFY 65
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ PVG R + VC CMLR ++E K+ DG + VEC G
Sbjct: 66 TMYEHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLG 124
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
ACVNAPM+ + KD +E+LT E ++++++ +
Sbjct: 125 ACVNAPMMQVDKDYHENLTAESIDKVLEQYQ 155
>gi|297563971|ref|YP_003682944.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848420|gb|ADH70438.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 248
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 17 SFSEESAI----WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
+F+ E E+I RYP R +SA++PLL Q +EG VS+A + A+ L +
Sbjct: 18 AFTAEVTARLEPEAKEIIGRYP--RPRSALLPLLHLVQAEEGHVSKAGMRFCADQLGITL 75
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFYT ++ P G V VC T C + G +++ + ++ + DG
Sbjct: 76 AEVNAVATFYTMYRRRP-GGDYQVGVCTNTLCAVMGGDEIFQTLKDHLGVGNNETTEDGK 134
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DRI 189
++ E VEC AC AP+VM+ + +++ TP+ + ++D G+ GP +
Sbjct: 135 VTLEHVECNAACDFAPVVMVNWEFFDNQTPDTAKRLVDDLRLGRDVAPTRGPASLCTWKQ 194
Query: 190 SSAPAGGLTSLLDNNSKKRGKKK 212
+S G +
Sbjct: 195 ASRVLAGFEDGRAGEGVQAAAPS 217
>gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
Length = 155
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT +
Sbjct: 9 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVG R + VC CMLR ++E K+ DG + VEC GACV
Sbjct: 69 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
NAPM+ + KD +E+LT E ++++++ +
Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQYQ 155
>gi|29654735|ref|NP_820427.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
493]
gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493]
Length = 174
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L
Sbjct: 2 NEQTEQFILDEVVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ I V E+ATFY + L P+G + + +C PC LRG ++++ + ++
Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
SDG + + VEC AC APM I + +E+LTPE++ IID
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKL 165
>gi|291298802|ref|YP_003510080.1| NADH-quinone oxidoreductase E subunit [Stackebrandtia nassauensis
DSM 44728]
gi|290568022|gb|ADD40987.1| NADH-quinone oxidoreductase, E subunit [Stackebrandtia nassauensis
DSM 44728]
Length = 230
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+++EE E++ RYP + +SA++P+L Q Q+G++++ I A ++ + +V
Sbjct: 1 MAYTEEFRAQAREIMERYPEGKQRSALLPMLHLVQSQDGYITQDGIAFCAEMIGITKAQV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
++TFYT ++ P G V VC T C + G +K+ + R + DG ++
Sbjct: 61 AAVSTFYTMYKREPTGD-YLVSVCTNTLCDVMGGQKVFDALREYLGVDHDETTGDGKITL 119
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
E EC AC AP++ + + ++ P+ ++ G+ T G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFFDKTNPDEAVQLAKNLRNGERPTPTRG 167
>gi|227874588|ref|ZP_03992751.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|269977612|ref|ZP_06184579.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
gi|306817872|ref|ZP_07451611.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
35239]
gi|307701384|ref|ZP_07638405.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
FB024-16]
gi|227844797|gb|EEJ54943.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|269934215|gb|EEZ90782.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
gi|304649351|gb|EFM46637.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
35239]
gi|307613545|gb|EFN92793.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
FB024-16]
Length = 234
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 4/192 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
E+I+RYP +SA++P+L Q ++G+VS IE+ A +L + V +ATFYT
Sbjct: 14 KEAQEIINRYPEGHARSALLPMLHLVQSEDGYVSPNGIELCAELLGLNPAEVSAVATFYT 73
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
Q++ P G V VC + C + G +++ + + +DG ++ E +EC A
Sbjct: 74 QYKRRPNGE-YTVGVCVNSLCAVMGGDEIWDTVCEHLGVGHEETTADGKITLEALECNAA 132
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTSL 200
C AP++M+ + +++ TPE +++D G GP+ R + G
Sbjct: 133 CDYAPVIMVNWEFFDNQTPESAVKLVDDLRAGNPVGTTRGPKQIPTFRENEHLLAGFEDG 192
Query: 201 LDNNSKKRGKKK 212
+ G
Sbjct: 193 HVDEGASAGDAT 204
>gi|325067541|ref|ZP_08126214.1| NADH dehydrogenase subunit E [Actinomyces oris K20]
Length = 256
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF
Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVGT HV VC C + G +++ + + DGT+S E VEC AC
Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTSLLD 202
AP+VM+ + +++ TP+ +I A G+ GP+ R + G
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226
Query: 203 NNSKKRGKKK 212
+ + G+
Sbjct: 227 DEGRGPGEPT 236
>gi|326772148|ref|ZP_08231433.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
gi|326638281|gb|EGE39182.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
Length = 256
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF
Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVGT HV VC C + G +++ + + DGT+S E VEC AC
Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTSLLD 202
AP+VM+ + +++ TP+ +I A G+ GP+ R + G
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226
Query: 203 NNSKKRGKKK 212
+ + G+
Sbjct: 227 DEGRGPGEPT 236
>gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
Length = 345
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F++E+ E+I+RYP R +SA++PLL Q +EG+VS A + A +L + +V
Sbjct: 5 FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FYT ++ P G V VC T C + G +++ + + DG ++ E
Sbjct: 65 VASFYTMYKRRPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTEDGKITLEH 123
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC P++ + D ++ + P+ ++D G T G
Sbjct: 124 AECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGNRPTPSRG 169
>gi|297625732|ref|YP_003687495.1| NADH-quinone oxidoreductase chain E [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921497|emb|CBL56051.1| NADH-quinone oxidoreductase chain E [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 243
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+EE+ + + +RYP +R SA++P+L Q +G VS A + VA I + +V +
Sbjct: 26 TEETMAEMRAIAARYPDAR--SALMPMLHLVQSVDGRVSDAGMRAVAEIAGVNTAQVNGV 83
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ P G + + VC T C + G + L+ K+ DG S E +
Sbjct: 84 ATFYTMYKRRPAGHQH-IGVCTTALCAVMGGDILLSHVEKKLGIHEGETTPDGKFSLERL 142
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--DRISSAPAGG 196
EC C AP++M+ + +++TP + +E++D + G+ G I R + G
Sbjct: 143 ECNAGCDFAPVMMVNWEYMDNMTPAKADELLDKLAAGETVKSTRGATITDWRSAERVLAG 202
Query: 197 LTSLLDNNSKKRGK 210
+ G+
Sbjct: 203 FDDGRADEGPSAGE 216
>gi|332830192|gb|EGK02820.1| hypothetical protein HMPREF9455_01070 [Dysgonomonas gadei ATCC
BAA-286]
Length = 175
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLE 77
S+E +NE++S YP + +SA++P+L Q+ + W+S ++ VA IL++ I V E
Sbjct: 14 SDELMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEVYE 73
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT F PV + + C T C LRG E L++ K+ K DG S
Sbjct: 74 VVTFYTMFNQKPV-AKYMFEFCRTACCGLRGGEDLMDYTCQKLGVKQGEITPDGMFSVVG 132
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
VEC GAC PM+ +G + +E+LT ++++ +I+ G+
Sbjct: 133 VECLGACGYGPMLQLGDNYHENLTKDKIDTLIEDCKEGK 171
>gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 252
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P++F ++S E E+I RYP +SA++PLL Q ++
Sbjct: 12 RLGPPPEEPNAFVTEGAPQTYSPEVRARLEVDAKEIIGRYPD--KRSALLPLLHLVQAED 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E + L ++ V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLEFCGDQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAVF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
+G G R +S GL
Sbjct: 189 SGDPKPPTRGAPLCAFRETSRILAGL 214
>gi|320532545|ref|ZP_08033354.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135239|gb|EFW27378.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 256
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY
Sbjct: 45 QDDIERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFY 104
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+QF+ PVGT HV VC C + G +++ + DGT+S E VEC
Sbjct: 105 SQFRRHPVGT-YHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERVECNA 163
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTS 199
AC AP+VM+ + +++ TP+ +I A G+ GP+ R + G
Sbjct: 164 ACDYAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVVPTRGPETVPTFRENERLLAGFED 223
Query: 200 LLDNNSKKRGKKK 212
+ + G+
Sbjct: 224 GRTDEGRGPGEPT 236
>gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406]
gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406]
Length = 177
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
F FSE S + E+ +RYP R +SA++P+L AQ++ GW+ ++ VA++LD+ I
Sbjct: 8 FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V E+A+FY+ + L PVG + + C T PC L G E+LIE +K+ K ++DG +
Sbjct: 68 VYEVASFYSMYNLKPVG-KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQTSADGRFT 126
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ VEC G+C APM IG YE+LT E++++II+
Sbjct: 127 IKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKIIE 162
>gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
15436]
gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
15436]
Length = 224
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++++RYP +SA++P+L Q ++G+VS I + A++L + V +ATFY
Sbjct: 11 RAEAAQIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAVATFY 70
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+Q++ P G +V VC + C + G +++ E + +DG ++ E +EC
Sbjct: 71 SQYKRHPNGD-YNVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADGKITLERLECNA 129
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA---GGLTS 199
AC AP+VM+ + +++ TPE ++D G+ GP R + G
Sbjct: 130 ACDYAPVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPNQIRTFKEISHLLAGFED 189
Query: 200 LLDNNSKKRGKKK 212
L + G+
Sbjct: 190 GLVDEGPGAGEAS 202
>gi|269794077|ref|YP_003313532.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
gi|269096262|gb|ACZ20698.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
Length = 319
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 10/216 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS + PS + E + ++++ RYP +R SA++P+L Q ++G+V
Sbjct: 1 MSTDAQHQHPTAPSGTGYDEVTLARLTADAHQIVGRYPQAR--SALLPMLHLVQSEDGYV 58
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
SR+ I A +LD+ V +ATFYTQ++ P GT V VC T C + G +++ +
Sbjct: 59 SRSGITFCAEVLDLTPAEVSAVATFYTQYKRRPNGT-YTVGVCTNTLCAIMGGDEIFDEL 117
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ DG ++ E VEC AC AP++M+ + ++D TP ++D G+
Sbjct: 118 SEHLGIGHDETTEDGAVTLERVECNAACDYAPVMMVNWEFFDDQTPASARGVVDDLRFGK 177
Query: 177 GDTIRPGPQI---DRISSAPAGGLTSLLDNNSKKRG 209
G + S G T + G
Sbjct: 178 DVVPTRGASSVCTFKQMSRVLAGFTDGRADEGVGAG 213
>gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
oxidoreductase chain E) [Mycobacterium marinum M]
gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
oxidoreductase chain E) [Mycobacterium marinum M]
Length = 251
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAI----WVNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P+ F ++S ++ E+I RYP +SA++PLL Q ++
Sbjct: 12 RLGPPPEEPNQFTVEGAPQAYSPDALARLEIEAKEIIGRYPD--QRSALLPLLHLVQGED 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A ++ AN L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E ++ + SDG+++ +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
+G+ G P R +S GL
Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214
>gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
Length = 236
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 16 FSFSEESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
S++ ++ + +I+RYP +SA++P+L Q +G+VS I+ ++ LD+
Sbjct: 1 MSYTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ +ATFYTQ++ P G V VC C + G +++ E K+ + DG
Sbjct: 61 RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ------ 185
++ E +EC AC AP+VM+ + +++ +PE +ID G+ GP
Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179
Query: 186 ----------IDRISSAPAGGLTSLLDNNSKKRGKKK 212
+ P+ G +LL
Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLLGREIAAANGWT 216
>gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
17982]
gi|153798275|gb|EDN80695.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
17982]
Length = 236
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 16 FSFSEESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
S++ ++ + +I+RYP +SA++P+L Q +G+VS I+ ++ LD+
Sbjct: 1 MSYTPDTLARLQADATQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ +ATFYTQ++ P G V VC C + G +++ E K+ + DG
Sbjct: 61 RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ------ 185
++ E +EC AC AP+VM+ + +++ +PE +ID G+ GP
Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179
Query: 186 ----------IDRISSAPAGGLTSLLDNNSKKRGKKK 212
+ P+ G +LL
Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLLGREIAAANGWT 216
>gi|326329614|ref|ZP_08195936.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
gi|325952610|gb|EGD44628.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
Length = 213
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 5/202 (2%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S + E+ + E+ +RYP +R S ++P+L Q EG V+ I+ A++L + V
Sbjct: 1 MSLAPETFDELREIAARYPQAR--SGLLPMLHLVQSVEGRVTPEGIQACADVLGLTPAEV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFYT ++ PVG R HV VC T C + G +++ R K+ +DG ++
Sbjct: 59 SGVATFYTMYKRHPVG-RHHVGVCTNTLCAVMGGDEIFACLREKLEVGNDETTADGAITL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--DRISSAP 193
E +EC AC AP+VM+ + +++ TPE +++D G+ G +I R +
Sbjct: 118 EHIECNAACDYAPVVMVNWEFFDNQTPESAAQLVDDLREGREVVASRGARITSWREAERV 177
Query: 194 AGGLTSLLDNNSKKRGKKKKDD 215
G L + G+ +
Sbjct: 178 LAGFEDGLVDEGPASGEASQAG 199
>gi|116619256|ref|YP_821412.1| NADH-quinone oxidoreductase subunit E [Candidatus Solibacter
usitatus Ellin6076]
gi|116222418|gb|ABJ81127.1| NADH-quinone oxidoreductase, E subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 160
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ S + ++++ YPP R +SA+IP+LM AQ++ G VS I VA + + ++V
Sbjct: 1 MTLSPQLEARFEKLLTSYPPGRQRSAMIPMLMYAQDELGCVSDELIAEVARRIGVTPLQV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ T+Y+ P+G + HVQVC C+L +KL E K+ +DG S
Sbjct: 61 NEVLTYYSMLHRKPLG-KYHVQVCTNISCLLHDGDKLYEHTCKKLGITHKEVTADGQFSI 119
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
EEVEC GAC AP + I D + +TPE+L++++D Q
Sbjct: 120 EEVECMGACSWAPAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160
>gi|312890392|ref|ZP_07749929.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
gi|311297162|gb|EFQ74294.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
Length = 174
Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 4/168 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E+ Q +S FSE+ N+V+SRYP + +S ++P+L Q + GWVS A++ VA L
Sbjct: 5 EDTQ-TSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVAEYL 63
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ +I V E+A+FY+ + L P G + ++VC T PC L G EK+++ K+ K
Sbjct: 64 GIQHIEVYEVASFYSMYLLRPQG-KYLLEVCRTGPCCLVGAEKIMDYIEQKLGVKEGEVT 122
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
DG SW VEC AC AP++ IG + YE+LTPE++++++ +
Sbjct: 123 PDGLFSWRGVECLAACGFAPVLQIGPEYTFYENLTPEKVDKLVADLTA 170
>gi|289207897|ref|YP_003459963.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
K90mix]
gi|288943528|gb|ADC71227.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
K90mix]
Length = 176
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 2/172 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+ +A + S+ ++ ++RYP + +SAV+ L Q ++G++S A ++
Sbjct: 6 KTVAFHKPAGKKVELSDHEREEIDAWLARYPEDQKRSAVLGALRAVQHEDGYLSTAKMDA 65
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA L + I V E+ +FY+ ++L PVG + + VC CMLRG E++IE N++ K
Sbjct: 66 VAEYLGLPAIAVYEVGSFYSMYELEPVG-KHTIMVCNNISCMLRGSEQIIEHLENRLGIK 124
Query: 124 PLHRNSDGTLSWEE-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
DG + EC AC APM+ + YE+LTPE+++EI+D
Sbjct: 125 LGESTPDGKFYLKMEEECLAACCGAPMMQVDHVYYENLTPEKVDEILDGLEK 176
>gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Streptosporangium roseum DSM 43021]
gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
[Streptosporangium roseum DSM 43021]
Length = 219
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 10/201 (4%)
Query: 16 FSFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
+++ E E+I RYP +R SA++PLL Q ++G+VS E A +L ++
Sbjct: 1 MTYTPEVRERLEQDAKEIIGRYPKTR--SALLPLLHLVQSEDGYVSDDGQEFCAEMLGLS 58
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V+ ++TFYT ++ P+G HV VC T C + G +++ + DG
Sbjct: 59 KAEVVGVSTFYTMYKRKPMGD-YHVGVCINTLCAVMGGDQIWDELSEHAGVGHDETTPDG 117
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DR 188
+S E +EC AC AP++M+ + +++ TP ++++D G+ + GP+ +
Sbjct: 118 KVSLERLECNAACDFAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGPKKLCTFK 177
Query: 189 ISSAPAGGLTSLLDNNSKKRG 209
+S GL L +
Sbjct: 178 EASRVLSGLPDGLAADGPSAS 198
>gi|119714788|ref|YP_921753.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
gi|119535449|gb|ABL80066.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
Length = 263
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 5/199 (2%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S ++E+ + E+ +RYP R S ++P+L Q EG ++ IE A++L + V
Sbjct: 1 MSLTQETYGELQEIAARYPEPR--SGLLPMLHLVQSAEGRITPEGIEACADLLGVTAAEV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFYT ++ PVG HV VC T C + G + + + ++ + DG ++
Sbjct: 59 SGVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDAIFDRLKSDLGVGNDETTEDGKITL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--DRISSAP 193
E +EC AC AP++M+ + +++TP+ IID G GP+I R +
Sbjct: 118 EHIECNAACDYAPVMMVNWEFMDNMTPDTAARIIDDLRAGNEVHSTRGPRIVTWREAERV 177
Query: 194 AGGLTSLLDNNSKKRGKKK 212
G L + G+
Sbjct: 178 LAGFPDDLADEGPAAGRAS 196
>gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM
2366]
gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM
2366]
Length = 170
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
EE QP FS +E++ RYP + +SA++P+L Q + GW+S AA++ VA L
Sbjct: 5 EEQQPV--EFSPALLTKFDEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVAAYL 62
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
D+ I V E+A+FY+ + L P G + ++VC T PC L G EKL+ NK+ K
Sbjct: 63 DIQDIEVYEVASFYSMYFLKPQG-KYVLEVCRTGPCCLVGAEKLMGHIENKLGVKENEVT 121
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
+DG SW VEC AC P++ IG + YE+L ++++E+I+
Sbjct: 122 ADGLFSWRGVECLAACGYGPVLQIGPEYTFYENLNEQKVDELIEDLRK 169
>gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
178 str. F0338]
Length = 233
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 16 FSFSEESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
S++ + + +I+RYP +SA++P+L Q +G+VS I++++ ILD+
Sbjct: 1 MSYTPDVEARLRADSAQIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ +ATFYTQ++ P G V VC C + G +++ E K+ + G
Sbjct: 61 RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWERVSAKVGVGSDETSESG 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ------ 185
++ E +EC AC AP+VM+ + +++ TPE +ID G+ GP
Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESALALIDDIEAGRDIHPTRGPAVAPAFK 179
Query: 186 ----------IDRISSAPAGGLTSLLDNNSKKRGKKK 212
R P+ G +LL +
Sbjct: 180 ENERLLAGFPDGRADEGPSAGPATLLGVGIAQENGWT 216
>gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira
defluvii]
gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira
defluvii]
Length = 178
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E +++++SRYP +SA++PLL AQ ++G+++ AA++ +A +L + +V E A
Sbjct: 4 ETHKAEIDDILSRYPV--KRSALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYETA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFYT L PVG + H+QVC + C L G + +I K+ KP D + VE
Sbjct: 62 TFYTMLNLKPVG-KFHLQVCKSLMCALVGSDTVIGWISAKLGIKPGETTPDRLFTLSIVE 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
C AC PM+ + D YE LT E+L+ I+ +++ GP
Sbjct: 121 CLAACGTGPMMQVNDDYYERLTEEKLDRILADLRQTGTCSLKTGP 165
>gi|153872952|ref|ZP_02001700.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
gi|152070587|gb|EDN68305.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
Length = 171
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS R+++ SEES ++ I++YP + QS V+ L Q+ G W++
Sbjct: 1 MST-RMSKPNASTL---LSEESRAAIDRWIAKYPSDQKQSTVMAALSIVQDANGGWLTTE 56
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
++ VA+ LDM I V E+ATFY+ ++L PVG + +C CMLRG E ++ K
Sbjct: 57 LMDAVADYLDMQPIAVYEVATFYSMYELKPVGQ-NKLCICTNVSCMLRGSEDIVAHLEQK 115
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ K D + +EVEC GAC APM+ +G++ +E+LT E++++I+
Sbjct: 116 LGIKLGETTPDKKFTLKEVECLGACGGAPMMQVGREYHENLTSEKVDDILTKL 168
>gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440]
gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica
CNB-440]
Length = 317
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I A +L + +V
Sbjct: 16 FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 75
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FYT ++ P G V VC T C + G +++ + + +DGT++ E
Sbjct: 76 VASFYTMYKRRPTGD-WLVSVCTNTMCNVLGGQEVYDALVEHLGVGHEETTADGTVTLEH 134
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
EC AC P++ + D ++++ P+ ++D G T G ++ R
Sbjct: 135 AECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRPTSSRGARLCR 185
>gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
180 str. F0310]
gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
180 str. F0310]
Length = 235
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 16 FSFSEESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
S++ ++ + +I+RYP +SA++P+L Q +G+VS I+ ++ L++
Sbjct: 1 MSYTPDTLARLQADAAQIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ +ATFYTQ++ P G V VC C + G +++ E +K+ ++DG
Sbjct: 61 RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWEKVSDKVGVGSDETSADG 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
++ E +EC AC AP+VM+ + +++ TPE +ID G+ GP +
Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESAAAMIDDIQEGRDIHPTRGPVVAPTFK 179
Query: 192 APA---GGLTSLLDNNSKKRGK 210
G ++ G+
Sbjct: 180 ENERVLAGFLDGHEDEGPSAGQ 201
>gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC
25259]
gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC
25259]
Length = 168
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
S E+ ++ +++YP + QSAV+ L AQ ++GW+ I+ VA+ L M I
Sbjct: 9 DKVELSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYLQMPPI 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
E+ATFY + PVG R + VC PC LRG ++ + K+ DG
Sbjct: 69 AAYEVATFYNMYDTQPVG-RHKITVCTNLPCALRGAGEIAAHLKEKLGIGFGETTEDGRY 127
Query: 134 SWEEVECQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFS 173
+ +E EC GAC +APM + T + LTPE+++E++D
Sbjct: 128 TLKEGECMGACGDAPMCLHNNHTMHTHLTPEKVDELLDKLK 168
>gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
Length = 170
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 5/170 (2%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L+ + P ++ +E++ RYP R +SA++P+L Q + GW+S A++ VA
Sbjct: 2 LSVKNNSPV--EIKDDLLAKFDEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
L + I V E+ATFYT F L P G + ++VC T PC L G E++++ N++ K
Sbjct: 60 AYLRIEPIEVYEVATFYTMFFLQPQG-KYVLEVCRTGPCCLVGAERIMKHIENRLGVKEN 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGK--DTYEDLTPERLEEIIDAFS 173
DG SW +EC AC P++ IG YE+LT E ++++I+
Sbjct: 119 EVTPDGLFSWRGIECVAACGMGPVLQIGPTYTYYENLTEESVDQLIEELK 168
>gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
thiooxidans DMS010]
gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
thiooxydans DMS010]
Length = 170
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMA 71
P F+E ++ I++YP + QSAVIP L Q EGW++ A ++ +A+ L +
Sbjct: 9 PKEGLFTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIP 68
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
I V E+ATFYT F+LSPVG + + VC CML G EK+++ K++ KP DG
Sbjct: 69 AISVYEVATFYTMFELSPVG-KHKISVCTNISCMLCGSEKVMQHIEQKLNIKPGQTTEDG 127
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ +EVEC GACV APM+++ K +E LT +++++I+D ++
Sbjct: 128 LFTLKEVECLGACVGAPMMLVDKQYHEFLTEDKIDDILDRLNS 170
>gi|332883540|gb|EGK03823.1| hypothetical protein HMPREF9456_01890 [Dysgonomonas mossii DSM
22836]
Length = 174
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVA 65
+E Q + SE +NE++S YP + +SA++P+L Q+ + W+S ++ VA
Sbjct: 3 TKEYTQVINM--SESLMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVA 60
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
IL++ I V E+ TFY+ F P + + C T C LRG E L+E K+ KP
Sbjct: 61 EILEITPIEVYEVVTFYSMFNQKP-IAKYMFEFCRTACCGLRGGENLMEYTCQKLGVKPG 119
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
DG S VEC GAC PM+ +G + +E+L E+++ +I+ G+
Sbjct: 120 EITPDGMFSVVGVECLGACGYGPMLQLGDNYHENLNKEKIDTLIEDCKQGK 170
>gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 252
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P++F S+ E E++ RYP +SA++PLL Q Q+
Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPD--KRSALLPLLHLVQSQD 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 DALKEHLGIDNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
G+ G + R +S GL
Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214
>gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
Length = 286
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +ATFY+
Sbjct: 32 ADAETIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVATFYS 89
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ +P G V VC T C + G + ++E + P +DG ++ E VEC A
Sbjct: 90 MYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAA 148
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRISSAPAGGL 197
C AP+VM+ D +++ TP E++D +GQ G R +S GL
Sbjct: 149 CDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRGGSLCTFRETSRILAGL 204
>gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
Length = 178
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 3/180 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
MS+ Q FS E + V I+ +P + +SA++ +L A+E+ G W+S
Sbjct: 1 MSISVTHNSTDQAEP-QFSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVP 59
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+ VA +L++ I V E+ATFYT F + + ++VC T PCML G +++IE NK
Sbjct: 60 TMNYVAGLLNIQPIEVYEVATFYTMFNIE-KPGKVVLEVCRTGPCMLVGSDQIIEHIENK 118
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ K ++DG + + EC GAC PM+ GK +E LTP +++E++D +
Sbjct: 119 LDIKVGQTSADGMFTLKTAECLGACGYGPMLQCGKHYHEHLTPAKVDELLDTLRKEHSEK 178
>gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
39149]
gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
39149]
Length = 295
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F+E++ E+I+RYP R +SA++PLL Q +EG+VS + +E A +L + +V
Sbjct: 4 FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ P G V VC T C + G +++ + + +DGT++ E
Sbjct: 64 VATFYTMYKRKPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTADGTVTLEH 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC P++ + D ++ + P+ +++ +G G
Sbjct: 123 AECLAACDYGPVMTVNYDFFDGVDPQTALGVVEELRSGGRPMPTRG 168
>gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104]
gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104]
Length = 252
Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P++F S+ E E++ RYP +SA++PLL Q Q+
Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPD--KRSALLPLLHLVQSQD 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
G+ G + R +S GL
Sbjct: 189 AGKPRHPTRGAPLCVFRETSRILAGL 214
>gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
serovar Lai str. 56601]
gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
serovar Lai str. 56601]
Length = 159
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAYI 73
+ FSE S +++ +P +S ++P L Q + G+V + + +A + ++
Sbjct: 3 YKFSETSEKRFQKMLKAFPD--KRSLILPCLYILQRENGFVDQEGMNYIAERIGDPISLA 60
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E ++ SD
Sbjct: 61 QVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQKF 119
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ EEVEC GAC APMV I D YE LTPE++++I+D
Sbjct: 120 TLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDL 158
>gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99]
gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
oxidoreductase chain E) [Mycobacterium ulcerans Agy99]
Length = 251
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAI----WVNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P+ F ++ ++ E+I RYP +SA++PLL Q ++
Sbjct: 12 RLGPPPEEPNQFTVEGAPQAYPPDALARLEIEAKEIIGRYPD--QRSALLPLLHLVQGED 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A ++ AN L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E ++ + SDG+++ +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
+G+ G P R +S GL
Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214
>gi|225871981|ref|YP_002753435.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
51196]
gi|225792810|gb|ACO32900.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
51196]
Length = 166
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E A + +++ YP +SA+IP+L+ AQ++ G++S A + VA + +A + V
Sbjct: 9 FSPELAARFDRLVTLYPV--KRSALIPMLLYAQDEVGYISDAVVAEVAERIGIAELDVRN 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ ++Y+ + PVG + HVQVC CMLRG +L+ C ++ +DG S EE
Sbjct: 67 VVSYYSLMRTKPVG-KYHVQVCTNIACMLRGGNELLHHCSKRLGIGNKQTTADGVFSLEE 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
VEC GAC AP V + D +E+LTPE +++++D +
Sbjct: 126 VECIGACSWAPAVQVNYDFHENLTPELMDKVLDEYRA 162
>gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 161
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAYI 73
+ FSE S +++ +P +S ++P L Q + G+V + + +A + ++
Sbjct: 5 YKFSETSEKRFQKMLEAFPD--KRSLILPCLYILQRENGFVDQEGMNYIAERIGDPISLA 62
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E ++ SD
Sbjct: 63 QVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQKF 121
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ EEVEC GAC APMV I D YE LTPE++++I+D
Sbjct: 122 TLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDL 160
>gi|159899602|ref|YP_001545849.1| NADH-quinone oxidoreductase subunit E [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892641|gb|ABX05721.1| NADH-quinone oxidoreductase, E subunit [Herpetosiphon aurantiacus
ATCC 23779]
Length = 174
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 2/171 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ ++E+++RYP R +SA++PLL AQ+ G + R +I VA ILD+ Y V E+
Sbjct: 4 EQHKAEIDEILARYPVDRKRSALLPLLYLAQDVYGRLDRDSIREVAEILDLPYTDVFEVV 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FYT F VG + VC PC G E+L+ N++ K D + V+
Sbjct: 64 GFYTLFYNEEVGKV-VLDVCDDVPCCFCGAEELVADLENRLGIKAGETTKDKVFTLRRVK 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
C AC AP++ + + + P+++E ++ ++ +P R++
Sbjct: 123 CIAACDQAPVLQANLEFHNRVLPDKVEAMLAKLRND-VESGKPVSISGRLA 172
>gi|256821519|ref|YP_003145482.1| NADH-quinone oxidoreductase subunit E [Kangiella koreensis DSM
16069]
gi|256795058|gb|ACV25714.1| NADH-quinone oxidoreductase, E subunit [Kangiella koreensis DSM
16069]
Length = 164
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ IS+YP R +SA+IP+L QE+ G +SR A++ A+ L++ +I E
Sbjct: 10 LSAESIEKIDLWISKYPTERKRSAIIPVLTIVQEELGHLSREAMDASADYLEIPHIAAYE 69
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY+ F+L P G + V +C CM+ G E L + ++++ +P + DG +S +E
Sbjct: 70 VATFYSMFRLEP-GGKHVVSLCTNVSCMMAGSEALKKWFKDELGIEPGQTSKDGRISLKE 128
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VEC AC APM+ + K +E+LT E++ ++I
Sbjct: 129 VECMAACGGAPMLEVDKQYHENLTVEKMADLIRDL 163
>gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
Length = 417
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V+++YP + +SA++PLL Q +G+V+ I+ A +L+++ V +ATFYT
Sbjct: 33 ADAELVVAKYP--QKRSALLPLLHLVQSVDGYVTGRGIDFCAEVLELSRAEVSGVATFYT 90
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
Q++ P G V VC T C + G +++ + + DG ++ E +EC A
Sbjct: 91 QYKRHPNGE-YTVGVCTNTLCAIMGGDEIWDSVSEHLGIGHDETTDDGKVTLERIECNAA 149
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTSL 200
C AP+VM + +++ TPE +++D G GP + S G
Sbjct: 150 CDYAPVVMANWEFFDNQTPESTNQLVDDLRAGTPVKPTRGPNSLCSFKQMSRVLAGFNDG 209
Query: 201 LDNNSKKRGKKK 212
L + G
Sbjct: 210 LADEGVGAGPAS 221
>gi|313836204|gb|EFS73918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA2]
gi|314927639|gb|EFS91470.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL044PA1]
gi|314971362|gb|EFT15460.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA3]
gi|328906299|gb|EGG26074.1| NADH dehydrogenase subunit E [Propionibacterium sp. P08]
Length = 260
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + + ++ SRYP R SA++P+L Q +G VS IE A +L + +V +
Sbjct: 37 DEHTIEEMRQIASRYPDPR--SALLPILHLVQSVDGRVSPVGIETAAEVLGITTAQVSGV 94
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ + H+ VC T C + G E+++ K+ K DG S E V
Sbjct: 95 ATFYTMYK-KHPAGQHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGETTPDGKFSLEGV 153
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------ 186
EC AC AP++M+ + +++TP R EEI+DA + + G +I
Sbjct: 154 ECNAACDFAPIMMVNWEYMDNMTPIRAEEILDALARDEEVHSTRGAKITSWREAERVLAG 213
Query: 187 ---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R P+ G SL K+ K D
Sbjct: 214 FPDGRADEGPSAGEASLRGVRLAKQNGWKAPD 245
>gi|77166019|ref|YP_344544.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
oceani ATCC 19707]
gi|254436398|ref|ZP_05049904.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
oceani AFC27]
gi|76884333|gb|ABA59014.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
gi|207088088|gb|EDZ65361.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
oceani AFC27]
Length = 175
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76
S E ++ I++YPP R QSAVIP L Q G+++ ++ VA L+M I V
Sbjct: 20 LSSEVRQQIDYWIAKYPPERKQSAVIPALHIVQAVNGGYLTDKLLDAVAEYLEMRPISVY 79
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ATFY+ ++L P+G R + VC C L G ++++ + ++ D + +
Sbjct: 80 EVATFYSMYELKPIG-RHKISVCTNISCQLSGSDEVVAHLQKRLGIGFGETTPDHRFTVK 138
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E EC GAC APM+M G +E+LT E++++I++A
Sbjct: 139 EAECLGACGGAPMMMAGHTYHENLTSEKIDQILEALK 175
>gi|332669453|ref|YP_004452461.1| NADH-quinone oxidoreductase subunit E [Cellulomonas fimi ATCC 484]
gi|332338491|gb|AEE45074.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas fimi ATCC 484]
Length = 308
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Query: 1 MSVRRL--AEEEFQPSSFSFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEG 54
MSV + A +F EE+ ++ +RYP + +SA++PLL Q ++G
Sbjct: 1 MSVEEIGGARVPGATHRTAFDEETRARLSADAAQIKARYP--QERSALLPLLHLVQSEDG 58
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
+VS I A L + V +ATFYTQ++ P G V VC T C + G + + E
Sbjct: 59 YVSPRGIAFCAAELGLTTAEVSAVATFYTQYKRHPNGD-YTVGVCTNTLCAVMGGDAIWE 117
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ + +DG+++ E VEC AC AP+VM+ + +++ TP+ E++DA
Sbjct: 118 ELSDHLGVGHDETTADGSITLERVECNAACDYAPVVMVNWEFFDNQTPDSAREVVDALRQ 177
Query: 175 GQGDTIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKK 212
G G + + S G + + G
Sbjct: 178 GAPVAPTRGAEHVCTFKEMSRVLAGFSDGRADEGVGAGPAT 218
>gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca
ATCC 27029]
gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5]
gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca
ATCC 27029]
gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5]
Length = 364
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
SFSE + E+I+RYP R +SA++PLL Q +EG+VS A +E A +L + +V
Sbjct: 1 MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFYT ++ P G V VC T C + G +K+ + + +DG ++
Sbjct: 61 GAVATFYTMYKRKPTGD-YLVSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETTADGKITL 119
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
E EC AC P++ + D ++++ P+ ++++ G G
Sbjct: 120 EHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAGGRPMPTRG 167
>gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
Length = 166
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+F+ E E+I+RYP + +SA++PLL QEQEGW S ++ VA +LD+ I V
Sbjct: 10 TFTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPIEVY 69
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FYT + L+PVG + ++ C T PC L G E + + ++ DG + +
Sbjct: 70 EVASFYTMYHLNPVG-KHVIEYCRTGPCCLMGGEDVYAHLKQRLGIDTGQTTVDGQFTLK 128
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
EVEC AC P+ I + Y LT ER++EIID
Sbjct: 129 EVECLAACGMGPVFQIREKYYMHLTNERVDEIIDEL 164
>gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium ATCC
25291]
Length = 252
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P++F S+ E E++ RYP +SA++PLL Q Q+
Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPD--KRSALLPLLHLVQSQD 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
G+ G + R +S GL
Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214
>gi|317123849|ref|YP_004097961.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
gi|315587937|gb|ADU47234.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
Length = 255
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 19/229 (8%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L E +P + E+ + EVI+RYP + +SA++PLL Q +G+V+ + + A
Sbjct: 15 LRPESKEPYAPEVLEQLRVDAAEVIARYP--QKRSALLPLLHLVQSVDGYVTGRGVSLCA 72
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+LD+ V +ATFYTQF+ P G V VC T C + G +++ + +
Sbjct: 73 ELLDLTEAEVSGVATFYTQFKRHPNGE-YTVGVCTNTLCAVMGGDQIFDTVAEHLGIGHD 131
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP- 184
+DG ++ E +EC AC AP+VM + +++ TP+ +++D G+ GP
Sbjct: 132 ETTADGKITLERIECNAACDYAPVVMTNWEFFDNQTPDSTVQLVDDLREGKDVRPTRGPD 191
Query: 185 ------QIDRISS---------APAGGLTSLLDNNSKKRGKKKKDDKIS 218
Q+ R+ + P G SLL K S
Sbjct: 192 RVCTFKQVSRVLAGFHDGLADQGPGAGPASLLGLRIAKEHGWTAPGDES 240
>gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S]
gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S]
Length = 688
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 24 IWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E+I+RY PP +SA++PLL Q ++G VS+A IE A L + V
Sbjct: 34 ADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIEFCAAQLGLTAAEVTA 93
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ P GT HV VC + C + G + + R + DG ++ E
Sbjct: 94 VATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTPDGAITLEH 152
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP--QIDRISSAPAG 195
+EC AC AP++M+ + +++ TPE ++DA G+ T G R ++
Sbjct: 153 IECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRGAPLSSFRDTARILA 212
Query: 196 G 196
G
Sbjct: 213 G 213
>gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
Length = 688
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 24 IWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E+I+RY PP +SA++PLL Q ++G VS+A I+ A L + V
Sbjct: 34 ADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIDFCAAQLGLTAAEVTA 93
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ P GT HV VC + C + G + + R + +DG ++ E
Sbjct: 94 VATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTADGAITLEH 152
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP--QIDRISSAPAG 195
+EC AC AP++M+ + +++ TPE ++DA G+ T G R ++
Sbjct: 153 IECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRGAPLSSFRDTARILA 212
Query: 196 G 196
G
Sbjct: 213 G 213
>gi|50843382|ref|YP_056609.1| NADH dehydrogenase subunit E [Propionibacterium acnes KPA171202]
gi|289425625|ref|ZP_06427397.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
SK187]
gi|289426980|ref|ZP_06428699.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
J165]
gi|295131456|ref|YP_003582119.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
SK137]
gi|50840984|gb|AAT83651.1| NADH dehydrogenase I chain E [Propionibacterium acnes KPA171202]
gi|289153926|gb|EFD02619.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
SK187]
gi|289159802|gb|EFD07987.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
J165]
gi|291375165|gb|ADD99019.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
SK137]
gi|313763288|gb|EFS34652.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA1]
gi|313773334|gb|EFS39300.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL074PA1]
gi|313793604|gb|EFS41644.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA1]
gi|313802885|gb|EFS44098.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA2]
gi|313806331|gb|EFS44847.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA2]
gi|313810763|gb|EFS48477.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA1]
gi|313814972|gb|EFS52686.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA1]
gi|313819442|gb|EFS57156.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA2]
gi|313821248|gb|EFS58962.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA1]
gi|313822297|gb|EFS60011.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA2]
gi|313826145|gb|EFS63859.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA1]
gi|313829366|gb|EFS67080.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA2]
gi|313831074|gb|EFS68788.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL007PA1]
gi|313833204|gb|EFS70918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL056PA1]
gi|313838153|gb|EFS75867.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL086PA1]
gi|314916742|gb|EFS80573.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA4]
gi|314919132|gb|EFS82963.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA1]
gi|314921212|gb|EFS85043.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA3]
gi|314925994|gb|EFS89825.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA3]
gi|314930360|gb|EFS94191.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL067PA1]
gi|314956143|gb|EFT00539.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA1]
gi|314959676|gb|EFT03778.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA1]
gi|314962250|gb|EFT06351.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA2]
gi|314963236|gb|EFT07336.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA1]
gi|314969779|gb|EFT13877.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA1]
gi|314973942|gb|EFT18038.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA1]
gi|314976870|gb|EFT20965.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL045PA1]
gi|314979335|gb|EFT23429.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA2]
gi|314984992|gb|EFT29084.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA1]
gi|314986333|gb|EFT30425.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA2]
gi|314988570|gb|EFT32661.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA3]
gi|315079687|gb|EFT51675.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA2]
gi|315081015|gb|EFT52991.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL078PA1]
gi|315083922|gb|EFT55898.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA2]
gi|315085059|gb|EFT57035.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA3]
gi|315089488|gb|EFT61464.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA1]
gi|315097693|gb|EFT69669.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL038PA1]
gi|315098100|gb|EFT70076.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA2]
gi|315102682|gb|EFT74658.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA1]
gi|315107938|gb|EFT79914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA1]
gi|315108824|gb|EFT80800.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA2]
gi|327325713|gb|EGE67510.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
HL096PA3]
gi|327330839|gb|EGE72584.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
HL096PA2]
gi|327442868|gb|EGE89522.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA2]
gi|327445260|gb|EGE91914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA1]
gi|327447754|gb|EGE94408.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA2]
gi|327451635|gb|EGE98289.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA3]
gi|327452288|gb|EGE98942.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA2]
gi|327452505|gb|EGE99159.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL092PA1]
gi|328752121|gb|EGF65737.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA2]
gi|328755065|gb|EGF68681.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL020PA1]
gi|328757013|gb|EGF70629.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA1]
gi|328761549|gb|EGF75067.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
HL099PA1]
gi|332676325|gb|AEE73141.1| NADH-quinone oxidoreductase subunit E [Propionibacterium acnes 266]
Length = 261
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 18/212 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + +V +
Sbjct: 37 DEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQVSGV 94
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ + H+ VC T C + G E+++ K+ K DG S E V
Sbjct: 95 ATFYTMYK-KHPAGQHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFSLERV 153
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------ 186
EC AC AP++M+ + +++TP R EEI+D+ + + G +I
Sbjct: 154 ECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAERVLAG 213
Query: 187 ---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R P+ G SL K+ K D
Sbjct: 214 FPDGRADEGPSAGEASLQGVRLAKQSGWKAPD 245
>gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 159
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
S+ FSE S +++ +P +S V+P L Q + G+V + + +A L ++
Sbjct: 2 SYKFSEASEKRFRKMLEVFPD--KRSLVLPCLYILQRENGFVDQDGMAYIAERLGDPISL 59
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+V +ATFYT + PVG + H+Q+CGT+ C L G +++ E ++ SDG
Sbjct: 60 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLLGSDEIEEHICKRLGIHMGQTTSDGK 118
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ EEVEC GAC APMV IG D YE LTPE+++ I+D
Sbjct: 119 FTLEEVECLGACGYAPMVQIGDDFYEQLTPEKVDRILDNL 158
>gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
Length = 287
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +ATFY+
Sbjct: 32 ADAATIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVATFYS 89
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ +P G V VC T C + G + ++E + P +DG ++ E VEC A
Sbjct: 90 MYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAA 148
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRISSAPAGGL 197
C AP+VM+ D +++ TP E++D +GQ G R +S GL
Sbjct: 149 CDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRGGSLCTFRETSRILAGL 204
>gi|282855270|ref|ZP_06264602.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
gi|282581858|gb|EFB87243.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
gi|314923990|gb|EFS87821.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL001PA1]
gi|314965054|gb|EFT09153.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA2]
gi|314983074|gb|EFT27166.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA3]
gi|315090607|gb|EFT62583.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA4]
gi|315093906|gb|EFT65882.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL060PA1]
gi|315104125|gb|EFT76101.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA2]
gi|327325782|gb|EGE67574.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
HL103PA1]
Length = 261
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 18/212 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + +V +
Sbjct: 37 DEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQVSGV 94
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ + H+ VC T C + G E+++ K+ K DG S E V
Sbjct: 95 ATFYTMYK-KHPAGQHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFSLERV 153
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------ 186
EC AC AP++M+ + +++TP R EEI+D+ + + G +I
Sbjct: 154 ECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAERVLAG 213
Query: 187 ---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R P+ G SL K+ K D
Sbjct: 214 FPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245
>gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis
CDC1551A]
Length = 244
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P+ F S+ + E+I RYP +SA++PLL Q ++
Sbjct: 4 RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPD--RRSALLPLLHLVQGED 61
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A + A+ L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 62 SYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGGDAIF 120
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + SDG ++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 121 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 180
Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
+ G P R +S GL
Sbjct: 181 SDTPKAPTRGAPLCGFRQTSRILAGL 206
>gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv]
gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551]
gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97]
gi|121639032|ref|YP_979256.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663004|ref|YP_001284527.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
gi|148824343|ref|YP_001289097.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis F11]
gi|215405147|ref|ZP_03417328.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 02_1987]
gi|215413016|ref|ZP_03421717.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 94_M4241A]
gi|215428606|ref|ZP_03426525.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T92]
gi|215432108|ref|ZP_03430027.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
gi|215447439|ref|ZP_03434191.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
gi|218754929|ref|ZP_03533725.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis GM 1503]
gi|219559195|ref|ZP_03538271.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T17]
gi|224991524|ref|YP_002646213.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800183|ref|YP_003033184.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
1435]
gi|254233768|ref|ZP_04927093.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis C]
gi|254365774|ref|ZP_04981819.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis str. Haarlem]
gi|254552240|ref|ZP_05142687.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260188190|ref|ZP_05765664.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CPHL_A]
gi|260202295|ref|ZP_05769786.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T46]
gi|260206488|ref|ZP_05773979.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis K85]
gi|289444713|ref|ZP_06434457.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T46]
gi|289448829|ref|ZP_06438573.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
CPHL_A]
gi|289555422|ref|ZP_06444632.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
605]
gi|289571360|ref|ZP_06451587.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T17]
gi|289575861|ref|ZP_06456088.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
K85]
gi|289746958|ref|ZP_06506336.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
02_1987]
gi|289751827|ref|ZP_06511205.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T92]
gi|289755268|ref|ZP_06514646.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
gi|289759279|ref|ZP_06518657.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
gi|289763332|ref|ZP_06522710.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis GM 1503]
gi|294993128|ref|ZP_06798819.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 210]
gi|297635792|ref|ZP_06953572.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN 4207]
gi|297732789|ref|ZP_06961907.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN R506]
gi|298526623|ref|ZP_07014032.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis 94_M4241A]
gi|306777466|ref|ZP_07415803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu001]
gi|306782192|ref|ZP_07420529.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu002]
gi|306786012|ref|ZP_07424334.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu003]
gi|306790377|ref|ZP_07428699.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu004]
gi|306799102|ref|ZP_07437404.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu006]
gi|306804946|ref|ZP_07441614.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu008]
gi|306809135|ref|ZP_07445803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu007]
gi|306969237|ref|ZP_07481898.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu009]
gi|306973584|ref|ZP_07486245.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu010]
gi|307081293|ref|ZP_07490463.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu011]
gi|307085895|ref|ZP_07495008.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu012]
gi|313660122|ref|ZP_07817002.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN V2475]
gi|54037921|sp|P65574|NUOE_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|54041672|sp|P65573|NUOE_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|1781219|emb|CAB06290.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN E) [Mycobacterium tuberculosis
H37Rv]
gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subunit [Mycobacterium tuberculosis
CDC1551]
gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN E) [Mycobacterium bovis AF2122/97]
gi|121494680|emb|CAL73161.1| Probable NADH dehydrogenase I (chain E) nuoE [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124599297|gb|EAY58401.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis C]
gi|134151287|gb|EBA43332.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis str. Haarlem]
gi|148507156|gb|ABQ74965.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
gi|148722870|gb|ABR07495.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis F11]
gi|224774639|dbj|BAH27445.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321686|gb|ACT26289.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
1435]
gi|289417632|gb|EFD14872.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T46]
gi|289421787|gb|EFD18988.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
CPHL_A]
gi|289440054|gb|EFD22547.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
605]
gi|289540292|gb|EFD44870.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
K85]
gi|289545114|gb|EFD48762.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T17]
gi|289687486|gb|EFD54974.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
02_1987]
gi|289692414|gb|EFD59843.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
T92]
gi|289695855|gb|EFD63284.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
gi|289710838|gb|EFD74854.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis GM 1503]
gi|289714843|gb|EFD78855.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
gi|298496417|gb|EFI31711.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
chain E) [Mycobacterium tuberculosis 94_M4241A]
gi|308214178|gb|EFO73577.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu001]
gi|308324953|gb|EFP13804.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu002]
gi|308329369|gb|EFP18220.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu003]
gi|308333198|gb|EFP22049.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu004]
gi|308340529|gb|EFP29380.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu006]
gi|308344469|gb|EFP33320.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu007]
gi|308348465|gb|EFP37316.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu008]
gi|308353095|gb|EFP41946.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu009]
gi|308357068|gb|EFP45919.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu010]
gi|308361022|gb|EFP49873.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu011]
gi|308364630|gb|EFP53481.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
SUMu012]
gi|326902627|gb|EGE49560.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
W-148]
gi|328459920|gb|AEB05343.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
4207]
Length = 252
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P+ F S+ + E+I RYP +SA++PLL Q ++
Sbjct: 12 RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPD--RRSALLPLLHLVQGED 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A + A+ L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + SDG ++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
+ G P R +S GL
Sbjct: 189 SDTPKAPTRGAPLCGFRQTSRILAGL 214
>gi|329944206|ref|ZP_08292465.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328530936|gb|EGF57792.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 256
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 4/190 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF
Sbjct: 48 IERIIARYPAGKERSALIPMLHLFQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P HV VC C + G +++ + DGT+S E +EC AC
Sbjct: 108 RRHP-AGTYHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERIECNAACD 166
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRISSAPAGGLTSLLD 202
AP+VM+ + +++ TP+ +I A G+ GP+ R + G
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226
Query: 203 NNSKKRGKKK 212
+ + G+
Sbjct: 227 DEGRGPGEPT 236
>gi|300113269|ref|YP_003759844.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
C-113]
gi|299539206|gb|ADJ27523.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
C-113]
Length = 174
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATF 81
+++ I++YPP + QSA+IP L Q G +++ ++ VA L+M I V E+ATF
Sbjct: 24 RQQIDDWIAKYPPEQKQSAIIPALHIVQAANGGYLTDKLLDAVAEYLEMRPISVYEVATF 83
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+ ++L P+G R + VC C LRG ++++ R ++ D + +E EC
Sbjct: 84 YSMYELKPIG-RHKISVCTNISCQLRGSDEVVAHLRKRLGIGFGETTPDHRFTVKEAECL 142
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GAC APM+M G+ +E+LTP ++++I++A
Sbjct: 143 GACGGAPMMMAGRTYHENLTPAKIDQILEALK 174
>gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 163
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE+S + ++YP + +S ++ L AQE+ G++S A +E +A +L + I+V E
Sbjct: 2 LSEKSLAEIARERAKYPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
ATFY+ + L PVG R + VCG+ C L G + +++ ++ P +DG + +E
Sbjct: 62 AATFYSMYDLQPVG-RHKLCVCGSVSCFLNGSDAILQHLSERLGVSPGETTADGLFTLQE 120
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
VEC GAC +APM+ +G YE+LT E L+ ++
Sbjct: 121 VECLGACKDAPMLQVGDHYYENLTQESLDALLAKLR 156
>gi|78485166|ref|YP_391091.1| NADH-quinone oxidoreductase, E subunit [Thiomicrospira crunogena
XCL-2]
gi|78363452|gb|ABB41417.1| NADH dehydrogenase I chain E [Thiomicrospira crunogena XCL-2]
Length = 164
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ ++RYP + QSAV+ L QE G ++ ++ +A+ L+M I V E+ATF
Sbjct: 14 KERIDRWVARYPDDQKQSAVMAALRIVQETNGGHLTTELMDQIADYLEMPPIAVYEVATF 73
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y ++ PVG + + +C + CMLRG ++++ K++ K DG S ++VEC
Sbjct: 74 YGNYEHEPVG-KHKICLCNSISCMLRGNDEILAHMEKKLNIKVGEVTEDGRFSIKKVECL 132
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC APM+ IGK YE+LT ++EI+D
Sbjct: 133 GACGGAPMIQIGKTYYENLTETSVDEILDGL 163
>gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1]
Length = 166
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
+ E ++ +++YP + QSAVIP L Q+ G W+ R ++ VA L M + V
Sbjct: 10 LTPEMRAEIDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVY 69
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ATFY+ F L PVG R V +C C L+G E ++ K+ K D ++ +
Sbjct: 70 EVATFYSMFDLEPVG-RHKVNICTNICCWLKGAEDIVAYTEKKLGIKLGETTPDQRITLK 128
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM+++ Y DLTPE++++I+DA
Sbjct: 129 IEEECLAACTGAPMMVVDGHYYTDLTPEKIDQILDAL 165
>gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
40736]
gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
40736]
Length = 303
Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E+I+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFYT +
Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAEVTAVATFYTMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + E + + DG ++ E +EC AC
Sbjct: 92 RRRP-SGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TP ++D G+ T G
Sbjct: 151 FAPVVMVNWEFFDNQTPSSARRLVDDLRAGRPVTPTRG 188
>gi|313813678|gb|EFS51392.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA1]
gi|327333126|gb|EGE74853.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
HL097PA1]
Length = 261
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 18/212 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + +V +
Sbjct: 37 DEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQVSGV 94
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ + H+ VC T C + G E+++ K+ K DG S E V
Sbjct: 95 ATFYTMYK-KHPAGQHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFSLERV 153
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------ 186
EC AC AP++M+ + +++TP R EEI+D+ + + G +I
Sbjct: 154 ECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWCEAERVLAG 213
Query: 187 ---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
R P+ G SL K+ K D
Sbjct: 214 FPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245
>gi|299138538|ref|ZP_07031717.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
MP5ACTX8]
gi|298599784|gb|EFI55943.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
MP5ACTX8]
Length = 169
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E+A +++ + YP +SA+IP+L+ AQ++ G+VS + +A LD+ + V
Sbjct: 9 FSPETAARFDKLATIYPV--KRSALIPMLLYAQDEVGYVSDEVVAELAKRLDLLELDVRN 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ ++Y+ + P + +VQVC CMLRG +L++ C++ + DG S EE
Sbjct: 67 VLSYYSMLRTKP-AGKYNVQVCTNISCMLRGGFELLDHCKHTLGIGHKGVTPDGLFSLEE 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
VEC GAC AP V + D ++DLTP +++ ++ + G+G ++
Sbjct: 126 VECIGACCWAPAVQVNYDFHDDLTPAKMDAVLADYREGRGKDVK 169
>gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)]
gi|256785937|ref|ZP_05524368.1| NADH dehydrogenase subunit E [Streptomyces lividans TK24]
gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24]
gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24]
Length = 290
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E+I+RYP SR SA++PLL Q +EG V+R ++ A++LD+ V +ATFYT +
Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAEVTAVATFYTMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + E ++ + DG ++ E +EC AC
Sbjct: 92 RRRP-SGDYQVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TP ++ ++D G+ T G
Sbjct: 151 FAPVVMVNWEFFDNQTPASVKALVDDLRAGRPVTPTRG 188
>gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
Length = 170
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 5/168 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
EE QP +FS E++SRYP + +SA++P+L Q + GW+S A++ VA L
Sbjct: 5 EEQQPV--AFSAALLEKCAEIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDKVAEYL 62
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
++ I V E+A+FYT + L P G + +++C T PC L G EKL++ + K
Sbjct: 63 NIQPIEVYEVASFYTMYFLKPQG-KYMLEICRTGPCCLVGAEKLMDHLEQTLGVKEGEVT 121
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
DG SW VEC AC P++ IG + YE+L ++L+++I
Sbjct: 122 PDGLFSWRGVECLAACGYGPVLQIGPEYTFYENLDKQKLDDLIQDLRK 169
>gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
Length = 240
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 8/203 (3%)
Query: 17 SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
++S E+ + ++ SRYP +SA+IP+L Q ++G+V+ I + A L +
Sbjct: 19 AYSPETEARLRADIEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTL 78
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFY+QF+ P HV VC C + G +++ + + DG
Sbjct: 79 AEVSAVATFYSQFRRHP-AGEYHVGVCTNALCAVMGGDEIWQAVAEHTGLGNDETSEDGR 137
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ---IDRI 189
+S E +EC AC AP+VM+ + +++ TP +++ G+ GP+ R
Sbjct: 138 ISLERIECNAACDYAPVVMVNWEFFDNQTPASAVDMVSRLERGEDVAPTRGPETLPTFRE 197
Query: 190 SSAPAGGLTSLLDNNSKKRGKKK 212
+ G + G+
Sbjct: 198 NERVLAGFEDGRADEGMGAGEAS 220
>gi|162452500|ref|YP_001614867.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
gi|161163082|emb|CAN94387.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
Length = 165
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
F+ + E ++++RYP Q+A IP+L QEQEGWVS + VA
Sbjct: 2 PTADMTEQFALTAERRTEFEKILARYPN--RQAACIPVLHLCQEQEGWVSERVLRWVAEQ 59
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L ++ V +ATFYT F PVG + V VC T C L G ++++ C ++
Sbjct: 60 LGLSAAHVQGVATFYTLFNKEPVG-KHQVWVCRTLSCALNGADQVLHHCEKRLGIHAGET 118
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG ++ EC +C APM+ + +D +E LT E+++ I+D
Sbjct: 119 TKDGKITLRTAECLASCGTAPMMQVDRDYHEGLTLEKVDAILDRL 163
>gi|294630800|ref|ZP_06709360.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
gi|292834133|gb|EFF92482.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
Length = 293
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 21 ESAIW-VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E E+I+RYP SR SA++P+L Q +EG V+R + A++L + V +A
Sbjct: 31 ERLERDAREIIARYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCADVLGLTTAEVTAVA 88
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFYT ++ P V VC T C + G + L E + + DG ++ E +E
Sbjct: 89 TFYTMYRRKP-SGDYQVGVCTNTLCAVMGGDALFETLQEHLGVGNGETTDDGKVTLEHIE 147
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AC AP+VM+ + +++ TP ++ ++D G+ T G
Sbjct: 148 CNAACDFAPVVMVNWEFFDNQTPASVKRLVDDLRAGRPVTPTRG 191
>gi|268317704|ref|YP_003291423.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
4252]
gi|262335238|gb|ACY49035.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
4252]
Length = 224
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 6 LAEEEFQPSS--FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
L E P+ F F+EE + +Y AV+ L AQE+ G++ +++
Sbjct: 15 LHPEPQIPADQLF-FTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQL 71
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA+ L + Y +V +ATFYTQ+ G + + VC C + G ++ K+
Sbjct: 72 VADELGIPYAQVYGVATFYTQYYKERKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIH 130
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
DG + +EVEC GAC +AP++ + +LTPE+++++++ G+
Sbjct: 131 KGETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187
>gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
Length = 161
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
SF ++ E+ I E +SRYP + S ++P L QEQEGWVS A+ VA+ L I+
Sbjct: 3 SFKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPIQ 60
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V E+ATFYT F L P+G + H+++C T CM+ G ++L + ++ + + ++DG +
Sbjct: 61 VYEVATFYTMFNLKPIG-KYHIELCKTVSCMVCGAKELKQYIKDVLGLESGQTSADGLFT 119
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ EVECQGAC +APM+ + + LT E+LE+II
Sbjct: 120 FTEVECQGACGDAPMIALNNVYHGKLTKEKLEKIIWECKN 159
>gi|117927480|ref|YP_872031.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
gi|117647943|gb|ABK52045.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
Length = 269
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+V++RYP R +SA++PLL Q ++G+VS I +VA+IL + V +ATFY
Sbjct: 53 RERAAQVLARYP--RPRSALMPLLYLVQAEQGYVSADGIRLVADILGLTTAEVTAVATFY 110
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P G R V VC T C + G + + + R + + DG ++ E +EC
Sbjct: 111 TMYRRRPCG-RYLVGVCTNTLCAILGGDAIFDALREHLGIENGETTPDGAVTLEHIECNA 169
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TP E++D G G
Sbjct: 170 ACDYAPVVMVNWEFFDNQTPASARELVDRLRAGDPPMPTRG 210
>gi|66219966|gb|AAY42999.1| Nqo2 [Rhodothermus marinus]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 6 LAEEEFQPSS--FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
L E P+ F F+EE + +Y AV+ L AQE+ G++ +++
Sbjct: 15 LHPEPQIPADQLF-FTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQL 71
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA+ L + Y +V +ATFYTQ+ G + + VC C + G ++ K+
Sbjct: 72 VADELGIPYAQVYGVATFYTQYYKEKKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIH 130
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
DG + +EVEC GAC +AP++ + +LTPE+++++++ G+
Sbjct: 131 KGETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187
>gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836]
gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM
17836]
Length = 275
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
SE + + E+ +RYP R SA++P+L Q EG V+ IE A++L + V
Sbjct: 21 KISETTIAEMRELAARYPVGR--SALLPMLHLVQSVEGRVTPEGIEACADVLGLTGAEVS 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFYT ++ PVG HV VC T C + G + + E + + DG ++ E
Sbjct: 79 AVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDLIFERLKQHLDVGNDETTEDGKITLE 137
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---------- 186
+EC AC AP++M+ + ++D+TPE +++D G G I
Sbjct: 138 HIECNAACDYAPVMMVNWEFFDDMTPESATQLVDDLRDGTEVKSPRGATICTWREAERVL 197
Query: 187 -----DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
R P GG +L +
Sbjct: 198 AGFPDGRADEGPTGGKATLAGLRLARERNWTAP 230
>gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC
13950]
Length = 252
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P++F S+ E E++ RYP +SA++PLL Q Q+
Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPE--KRSALLPLLHLVQAQD 69
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E L ++ V +A+FYT ++ P G V VC T C + G + +
Sbjct: 70 SYLTPAGLEFCGEQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAVMGGDAIF 128
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + +DG+++ + +EC AC AP+VM+ + +++ T E E++D+
Sbjct: 129 DALKEHLGIGNDETTADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESARELVDSLR 188
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
+G+ G R +S GL
Sbjct: 189 SGEPKAPTRGAPLCAFRETSRILAGL 214
>gi|322436007|ref|YP_004218219.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
MP5ACTX9]
gi|321163734|gb|ADW69439.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
MP5ACTX9]
Length = 169
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E A + +I+ YP +SA++P+L+ AQ++ G+VS AI+ +A LD+ + V
Sbjct: 9 FSPEMAAKFDHLITIYPL--KRSALVPMLLYAQDELGFVSEPAIKEIAQRLDLFDLDVRN 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ ++Y+ + P + +VQVC CMLRG ++++ C+ K+ DG S EE
Sbjct: 67 VLSYYSMLRTKP-AGKYNVQVCTNISCMLRGGYEILDHCKAKLGIGHKQTTPDGQFSLEE 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
VEC GAC AP + + D ++DLT ++++I+ ++ G+G ++
Sbjct: 126 VECIGACCWAPAMQVNYDFHDDLTTVKVDDILAEYAAGRGKDVK 169
>gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
ATCC 51756]
gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
ATCC 51756]
Length = 163
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E + + +YP + +SA++ L AQE+ GW+ IE VA +L + I+ E
Sbjct: 2 LTENALAAIAAERRKYPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT + L PVG + + VCG+ C L G + ++ + ++ +DG + +E
Sbjct: 62 VATFYTMYDLKPVG-KHKLCVCGSVSCFLNGSDDILAHLQKRLGIGIGETTADGLFTLQE 120
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
VEC GAC +AP++ +G E LTPE ++ +I+ G
Sbjct: 121 VECLGACKDAPVLHLGDRYVEHLTPEGVDALIEQLRGG 158
>gi|320354159|ref|YP_004195498.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
gi|320122661|gb|ADW18207.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
Length = 168
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS R E +P F+F + + RYP +S ++P L QEQEGW+S A
Sbjct: 1 MSDRSQLIETGKP--FAFDAQRDAEFERLAKRYPT--RESLILPSLWLVQEQEGWISAEA 56
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A+ + V E ATFYT + L P G + H+ VC T C L G +++++ + ++
Sbjct: 57 MAYIADRIGTFASMVYEAATFYTMYNLQPKG-KYHICVCRTLSCYLLGKQEIVDYLQQEL 115
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
KP ++DG S EEVEC G C AP+V + + YE++ ++L+E++
Sbjct: 116 GIKPGDVSADGEFSLEEVECLGHCGTAPVVQVNGEFYENMNVDKLKELLATLK 168
>gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 168
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ +++ + RYP + QSAV+ L Q + G++S ++ VA + M I V E
Sbjct: 13 LNDHLREEIDDWLRRYPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYE 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ F+L PVG R + VC CMLRG ++++E NK+ K DG +
Sbjct: 73 VASFYSMFELKPVG-RHTIAVCTNISCMLRGSDRIVEHIENKLGIKTGESTPDGKFYIKR 131
Query: 138 -VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
EC AC APM+ + YE LTPER++EI+D
Sbjct: 132 EEECLAACCGAPMMQVDHVYYEHLTPERVDEILDGL 167
>gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica
DSM 15894]
gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 302
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 6/193 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+++RYP R S ++P+L Q +G+VS I A L + V +ATFY
Sbjct: 12 KSDAEAIVARYPDPR--SGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAEVSAVATFY 69
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
TQ++ P GT V VC T C + G + + + + DG ++ E VEC
Sbjct: 70 TQYKRHPNGT-YTVGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITLERVECNA 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DRISSAPAGGLTS 199
AC AP++M+ + +++ TPE + D G+ G + S G
Sbjct: 129 ACDYAPVMMVNWEFFDNQTPESAAAVADDLRAGKPVRPTRGADSVCTFKQMSRVLAGFPD 188
Query: 200 LLDNNSKKRGKKK 212
+ G+
Sbjct: 189 GRADEGGAPGEPS 201
>gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces
pristinaespiralis ATCC 25486]
Length = 276
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+I+RYP SR SA++PLL Q +EG VSR + A +LD+ V +ATFY
Sbjct: 25 EADAKEIIARYPGSR--SALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ ++ P V VC T C + G + + E + + DG ++ E +EC
Sbjct: 83 SMYRRKP-SGEYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TP+ ++++D G+ G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTPQSAKQLVDDLRAGEQVVPTRG 182
>gi|218459738|ref|ZP_03499829.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Kim
5]
Length = 164
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + DL R++ ++D
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLR 151
>gi|239980148|ref|ZP_04702672.1| NADH dehydrogenase subunit E [Streptomyces albus J1074]
gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074]
gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074]
Length = 291
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+I+RYP SR SA++P+L Q +EG+V+R + A +L + V +ATFY
Sbjct: 31 KADAEAIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + + + + DG ++ E +EC
Sbjct: 89 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFDELKEHLGVGNDETTEDGKITLEHIECNA 147
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TP+ + ++D G+ G
Sbjct: 148 ACDYAPVVMVNWEFFDNQTPDSAKRLVDDLREGRTVEPTRG 188
>gi|218662328|ref|ZP_03518258.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
IE4771]
Length = 170
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + DL R++ ++D
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLR 151
>gi|16263283|ref|NP_436076.1| NuoE2 NADH I chain E [Sinorhizobium meliloti 1021]
gi|307304398|ref|ZP_07584149.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
BL225C]
gi|307318105|ref|ZP_07597541.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
AK83]
gi|17380452|sp|P56910|NUOE2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 2; AltName:
Full=NADH dehydrogenase I subunit E 2; AltName:
Full=NDH-1 subunit E 2
gi|14523960|gb|AAK65488.1| NuoE2 NADH:quinone oxidoreductase (chain E) [Sinorhizobium meliloti
1021]
gi|306896146|gb|EFN26896.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
AK83]
gi|306902600|gb|EFN33194.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
BL225C]
Length = 168
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +RYP +SA++P LM AQ++ G + +E VA IL + + V E+ATFY
Sbjct: 4 REEIEAAAARYPD--RRSAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F P+G R H+Q+C CML G E L+ + + DG + VEC G
Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
AC AP++ +G D + +L RL+ ++++F + T ++R ++AP
Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166
>gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
Length = 253
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E A +I RYP SR SA++PLL Q ++G+++ A I A L + + V
Sbjct: 27 EVTERLAADAATIIGRYPQSR--SALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVT 84
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFY+ ++ P G V VC T C + G + ++E + + P +DGT++ E
Sbjct: 85 AVATFYSMYRREPTGE-YLVGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLE 143
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-----RISS 191
VEC AC AP+VM+ D +++ TP + +++D+ +G+ T + R ++
Sbjct: 144 HVECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPTP---SRSGALCTFRETA 200
Query: 192 APAGGLTSLLDNNSKKRGKKK 212
G L N +
Sbjct: 201 RILAG----LSNPGDAPDAGR 217
>gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae
ATCC 10712]
Length = 246
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++ RYP SR SA++P+L Q +EG V+R + A L + V +ATFY+
Sbjct: 27 EDARAIVDRYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAEVTAVATFYS 84
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P V VC T C + G + + E + + DG ++ E +EC A
Sbjct: 85 MYRRKP-SGDYQVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITLEHIECNAA 143
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP+VM+ + +++ TPE ++++D G+ G
Sbjct: 144 CDFAPVVMVNWEFFDNQTPESAKKMVDDLRAGRTVEPTRG 183
>gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1]
Length = 255
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFY
Sbjct: 25 EADAEEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEVTAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + E + + DG ++ E +EC
Sbjct: 83 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ T + E ++D G+ G
Sbjct: 142 ACDYAPVVMVNWEFFDNQTVDSAERMVDDLRAGRTVEPTRG 182
>gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478]
Length = 248
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 5 RLAEEEFQPSSF-------SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQE 53
RL +P+ F ++ E E+I RYP +SA++PLL Q ++
Sbjct: 4 RLGPPPEEPNQFVVEGAPQTYPPEVQARLEVDAKEIIGRYPD--KRSALLPLLHLVQGED 61
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+++ A +E A L + V +A+FYT ++ P G V VC T C + G + +
Sbjct: 62 SYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 120
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E + + +DGT++ + +EC AC AP+VM+ + +++ TPE E++D+
Sbjct: 121 EELKEHLGIGNDETTADGTVTLQHIECNAACDYAPVVMVNWEFFDNQTPESACELVDSLR 180
Query: 174 TGQGDTIRPGPQ--IDRISSAPAGGL 197
TG G R +S GL
Sbjct: 181 TGNPKEPTRGAPLCAFRETSRILAGL 206
>gi|320107664|ref|YP_004183254.1| NADH-quinone oxidoreductase subunit E [Terriglobus saanensis
SP1PR4]
gi|319926185|gb|ADV83260.1| NADH-quinone oxidoreductase, E subunit [Terriglobus saanensis
SP1PR4]
Length = 169
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E+A + +++ YP +SA++P+L+ AQ+ G+VS A + +A LD+ + V
Sbjct: 9 FSPETAARFDHLVTIYPV--RRSALVPMLLYAQDDIGYVSDAVVAEIAQRLDLLELDVRG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ ++Y+ + P + +VQVC CML G L++ C+ K+ +DG S EE
Sbjct: 67 VLSYYSMLRTKP-AGKYNVQVCTNISCMLVGGYDLLDHCKAKLGIGHKGVTADGLFSLEE 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
VEC GAC AP + + D +E++T +++ I++ ++ G+G ++
Sbjct: 126 VECIGACCWAPAIQVNYDFHENVTNIKMDAILEDYAAGRGKDVK 169
>gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
meliloti]
Length = 168
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +RYP +SA++P LM AQ++ G + +E VA IL + + V E+ATFY
Sbjct: 4 REEIEAAAARYPD--RRSAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F P+G R H+Q+C CML G E L+ + + DG + VEC G
Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLEKTLGIRKGETTPDGAFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
AC AP++ +G D + +L RL+ ++++F + T ++R ++AP
Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166
>gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
Length = 149
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/140 (42%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A+
Sbjct: 11 VHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTAMH 70
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+
Sbjct: 71 YVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKLGI 129
Query: 123 KPLHRNSDGTLSWEEVECQG 142
P + DG + VEC G
Sbjct: 130 GPGETSKDGLFTLSVVECLG 149
>gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
Length = 245
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+I RYP SR SA++PLL Q +EG+VSR I A +L + V +ATFY
Sbjct: 25 EADAKEIIGRYPDSR--SALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEVTAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + + + + +DG ++ E +EC
Sbjct: 83 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TP+ + ++D G+ G
Sbjct: 142 ACDYAPVVMVNWEFFDNQTPQSAKALVDDLLAGRPVEPTRG 182
>gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase, E subunit [Flavobacterium johnsoniae
UW101]
gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101]
Length = 176
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLE 77
+E +NE+IS YP + +SA++P+L Q+ W+S + VA IL + I V E
Sbjct: 13 TEALIARINELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAEILQIKPIEVYE 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT F P+G + + C T+ C LRG E L++ K+ K DG +
Sbjct: 73 VVTFYTMFNQKPIG-KYMFEFCQTSCCCLRGAEDLMDYTSEKLGIKMGETTPDGMFTIAG 131
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
VEC GAC APM+ +G E LT E++++II +
Sbjct: 132 VECLGACGYAPMMQLGDFYKEKLTEEKIDQIIADCRDDK 170
>gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
Length = 293
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E+I+RYP SR SA++PLL Q +EG V+R + A++L++ V +ATFYT +
Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAEVTAVATFYTMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + + + DG ++ E +EC AC
Sbjct: 92 RRKP-SGDYQVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TP + ++D G+ G
Sbjct: 151 FAPVVMVNWEFFDNQTPATAKRLVDDLRAGRPVEPTRG 188
>gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
Length = 286
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
EVI+RYP SR SA++PLL Q +EG V+R + A++L + V +ATFY+ +
Sbjct: 34 AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAEVTAVATFYSMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + E + + DG ++ E +EC AC
Sbjct: 92 RRRP-SGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TPE + ++D G+ G
Sbjct: 151 FAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188
>gi|160872029|ref|ZP_02062161.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
(ndh-1, chain e) [Rickettsiella grylli]
gi|159120828|gb|EDP46166.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
(ndh-1, chain e) [Rickettsiella grylli]
Length = 168
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78
EE +++ I +YP +R QSA++ L AQE G ++S+ I+ VA+ L M+ + E+
Sbjct: 13 EELKKAIDKWIQKYPSTRRQSAILQALTIAQEYNGGYLSQYLIDAVADYLAMSRVTAYEV 72
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++L PVG R + VC CML GC+K+++ + +++ +D + EV
Sbjct: 73 ATFYTLYELKPVG-RHKIGVCTNISCMLSGCDKIVKHLQTRLNINLGETTADKKFTLREV 131
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
EC GAC NAP+V IG YE LTPE+L++I+D
Sbjct: 132 ECLGACANAPVVHIGHRYYETLTPEKLDKILDGL 165
>gi|307328625|ref|ZP_07607798.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
Tu 4113]
gi|306885737|gb|EFN16750.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
Tu 4113]
Length = 276
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFY
Sbjct: 25 EADAREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEVTAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + E ++ + DG ++ E +EC
Sbjct: 83 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ T E + ++D G+ G
Sbjct: 142 ACDYAPVVMVNWEFFDNQTIESAKGLVDDLRAGRTVEPTRG 182
>gi|326382759|ref|ZP_08204449.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
gi|326198349|gb|EGD55533.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
VI+RYP R SA++PLL Q +G+++RA + A L + +V +ATFY+ ++
Sbjct: 48 VIARYP--RSGSALLPLLHLVQSHDGYLTRAGVAFCAEQLGLTAAQVASVATFYSMYRRE 105
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P G V VC T C + G + ++ + +P DG ++ E VEC AC AP
Sbjct: 106 PTGD-YLVGVCTNTLCAVMGGDAILSELTETLGIRPGETTPDGRVTLEHVECNAACDFAP 164
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DRISSAPAGG 196
+VM+ + ++D TP+ + ++D +G GP+I R ++ G
Sbjct: 165 VVMVNWEFFDDQTPDSAKALVDDLRSGVPRAPSRGPEILCTFRQTARLLAG 215
>gi|86359330|ref|YP_471222.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
42]
gi|86283432|gb|ABC92495.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
42]
Length = 172
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 2 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 60 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 118
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + DL R++ ++D
Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLDRLR 149
>gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152]
gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM
10152]
Length = 245
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E+I RYP + +SA++PLL Q ++G+V+ IE A L + V +ATFY+ F
Sbjct: 36 AKEIIGRYP--QPRSALLPLLHLVQSEDGYVTATGIEFCAEQLGLTGAEVTAVATFYSMF 93
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P G HV VC T C + G + ++ + +DG ++ E +EC AC
Sbjct: 94 RRTPTGD-YHVGVCTNTLCAVLGGDAILASLTEHLGIAAGETTADGAITVEHIECNAACD 152
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TPE ++DA G+ G
Sbjct: 153 FAPVVMVNWEFFDNQTPESARALVDALRAGEPVRPSRG 190
>gi|239929610|ref|ZP_04686563.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
EVI+RYP SR SA++PLL Q +EG V+R ++ A++L + V +ATFYT +
Sbjct: 34 AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + E + + DG ++ E +EC AC
Sbjct: 92 RRRP-SGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TPE + ++D G+ G
Sbjct: 151 YAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188
>gi|156741305|ref|YP_001431434.1| NADH-quinone oxidoreductase subunit E [Roseiflexus castenholzii DSM
13941]
gi|156232633|gb|ABU57416.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus castenholzii
DSM 13941]
Length = 174
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ +I+RYP +SAV+PLL AQ++ G+++ AA+ VA +LDM V E+A FY+
Sbjct: 9 AEIESIIARYP--HKRSAVLPLLFIAQDEYGYLTDAAMREVATLLDMPPTDVFEVAGFYS 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
PVG R +QVC PC G E LI + K+ DG + + V+C
Sbjct: 67 LLYEQPVG-RWVLQVCDDVPCAFCGAEDLIAALQAKLGIAVDQTTPDGMFTLQRVKCLAD 125
Query: 144 CVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
C +AP++ + Y DL TPE+++ ++ + ++ R +
Sbjct: 126 CDHAPVLQANLEYYHDLTTPEKVDAVLAELRR-RAESGEKLSISGRYA 172
>gi|296130547|ref|YP_003637797.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
20109]
gi|296022362|gb|ADG75598.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
20109]
Length = 294
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 6/192 (3%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
E+++RYP +R SA++P+L Q ++G+VS I A++L ++ V +ATFYT
Sbjct: 36 ADAQEIVARYPQAR--SALLPMLHLVQSEDGYVSPRGIAFCASVLGISTAEVSAVATFYT 93
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
Q++ P GT V VC T C + G + + E + DG ++ E VEC A
Sbjct: 94 QYKRHPNGT-YTVGVCTNTLCAVMGGDAIWEELSEHLGIGHDETTPDGAITLERVECNAA 152
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI---DRISSAPAGGLTSL 200
C AP+VM+ + +++ TP +++D + G+ G + S G
Sbjct: 153 CDYAPVVMVNWEFFDNQTPASAVDVVDRLAAGEAVAPTRGASSVCTFKEMSRVLAGFPDG 212
Query: 201 LDNNSKKRGKKK 212
+ G+
Sbjct: 213 RADEGVGAGEPT 224
>gi|118602279|ref|YP_903494.1| NADH-quinone oxidoreductase, E subunit [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567218|gb|ABL02023.1| NADH dehydrogenase subunit E [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 157
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ I++YP R SAV+ L Q E E +S I+ VA+ LDM I V E+ATF
Sbjct: 7 KKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVATF 66
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y + VG + ++ C CML G + LI NK+ + DG +S ++VEC
Sbjct: 67 YENYNHKKVG-KYVIRFCHNISCMLNGADDLIAYLENKLGVQTDEVTPDGLISVKKVECL 125
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GACV APM I + +E+LT +++++I+D
Sbjct: 126 GACVGAPMFQINDEYFENLTFDKIDKIVDNLK 157
>gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 157
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ ES ++ I++YP + QSAV+ L AQE++GW+S AIE VA L MA I E
Sbjct: 2 LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + L PVG + V VC PCML G E + K+ DG ++ +E
Sbjct: 62 VASFYNMYDLKPVG-KYKVSVCTNLPCMLTGGVDAGEYLKQKLGIDYNETTPDGLITLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ + PE++++++
Sbjct: 121 GECMGACGDAPVMIVNNRRMCSWMNPEQIDKLLAELK 157
>gi|282860723|ref|ZP_06269789.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
gi|282564459|gb|EFB69995.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
Length = 285
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
EVI+RYP SR SA++PLL Q +EG+VSR + A +L + V +ATFY
Sbjct: 29 EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAELLGLTTAEVTAVATFY 86
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + + ++ + DG ++ E +EC
Sbjct: 87 TMYRRRP-SGDYQVGVCTNTLCAVMGGDAIFDRLKDHLGVGNDETTEDGKVTLEHIECNA 145
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TPE ++D G+ G
Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186
>gi|256831783|ref|YP_003160510.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
20603]
gi|256685314|gb|ACV08207.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
20603]
Length = 269
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 13/219 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
M+ + P + + E+ ++ RYP +R SA++P+L Q +G+V
Sbjct: 1 MTTDAQTPK---PRAVGYEPETLEQLCTDAATIMGRYPNAR--SALLPMLHLVQSVDGYV 55
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+R I+ A+ LD+ V +ATFYTQ++ P G V VC T C + G + + E
Sbjct: 56 TRRGIQFCADQLDLTAAEVSAVATFYTQYKRRPNGD-YTVGVCTNTLCAVMGGDAIYEEL 114
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ DG ++ E VEC C AP+VM+ + +++ TP+ +++I+D G
Sbjct: 115 STYLGIGHDETTDDGKITLERVECNAGCDYAPVVMVNWEFFDNQTPDSMKKIVDELRLGN 174
Query: 177 GDTIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKK 212
T GP + S G L + G
Sbjct: 175 DVTPSRGPTKVCDFKHVSRVLAGFNDGLADQGPGAGDAS 213
>gi|114777365|ref|ZP_01452362.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
gi|114552147|gb|EAU54649.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
Length = 170
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FSE + E++ RYP + QSA++P+L AQE G++S + VA++L + ++V E
Sbjct: 12 FSEARLAEIAELVKRYPGA--QSALMPVLYMAQEDFGYLSMDVQQHVADVLGLRLMQVRE 69
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT F+ P GT ++VC CML G +L+ + K DG + E
Sbjct: 70 VVTFYTMFREKPCGT-YLLEVCTNAGCMLNGANELVAHMCETLGIKVGETTDDGLFTVAE 128
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
VEC GAC AP+V + +E +TPE ++ +I
Sbjct: 129 VECAGACGGAPVVQVNHTYHEKVTPETMDALITQMRAD 166
>gi|229821705|ref|YP_002883231.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
12333]
gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
12333]
Length = 283
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 21 ESAIWVNE--VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + + ++ RYP +SA++PLL Q ++ +VS A I + A++L + V +
Sbjct: 13 EERLRADAAVILERYPE--QRSALLPLLHLVQAEDSYVSPAGIALCADLLGLTNAEVSAV 70
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYTQ++ P G R V VC T C + G +++ + ++ DG ++ E +
Sbjct: 71 ATFYTQYKRRPNG-RYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQDGAITLERI 129
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP---QIDRISSAPAG 195
EC AC AP++M+ + +++ TP ++++A + Q T G Q R +S
Sbjct: 130 ECNAACDYAPVLMVNWEFFDNQTPTSAVDLVEALAADQPVTPTRGAAQVQDFRATSRVLA 189
Query: 196 GLTSLLDNNSKKRGKKK 212
G + G+
Sbjct: 190 GFEDGRADEGPGAGEAS 206
>gi|187930992|ref|YP_001890976.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711901|gb|ACD30198.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 162
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVNKVFYENLTIEKVNQIIDSL 161
>gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
Length = 256
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +++RYP +R SA++PLL Q ++G ++ A IE A ++D++ V+ +ATFY
Sbjct: 37 RADADLIVARYPQAR--SALLPLLHLVQAEDGHLTPAGIEFCALVVDLSPAEVMAVATFY 94
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ ++ +P G V VC T C + G +++ R+ + DG ++ E +EC
Sbjct: 95 SMYRRTPTGD-YLVGVCTNTLCAVMGGDEIYADLRDHLGLDGPGTTDDGRITLERIECNA 153
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VMI + ++D TP+ ++D G+ T G
Sbjct: 154 ACDYAPVVMINWEFFDDQTPDSARRVVDDLRAGRPVTPTRG 194
>gi|218674604|ref|ZP_03524273.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
GR56]
Length = 170
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I + E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWIYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + DL R++ ++D
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLR 151
>gi|148657774|ref|YP_001277979.1| NADH-quinone oxidoreductase subunit E [Roseiflexus sp. RS-1]
gi|148569884|gb|ABQ92029.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus sp. RS-1]
Length = 174
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ +I+RYP SAV+PLL AQ++ G+++ AA+ VA +LDM V E+A FY+
Sbjct: 9 AEIEAIIARYP--HKPSAVLPLLFIAQDEYGYLTEAAMREVAELLDMPPTDVFEVAGFYS 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
PVG + +QVC PC G E LI + K+ DG + + V+C
Sbjct: 67 LLYEQPVG-KWVLQVCDDVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTLQRVKCLAD 125
Query: 144 CVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
C +AP++ + Y DL TPE++E+++ + ++ R +
Sbjct: 126 CDHAPVLQANLEYYHDLTTPEKVEQVLAMLRQ-RAESGEQLSISGRYA 172
>gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
Length = 286
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFY
Sbjct: 25 EADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + E + + DG ++ E +EC
Sbjct: 83 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TPE ++D G+ G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTPESAVRLVDELRAGREVEPTRG 182
>gi|190893217|ref|YP_001979759.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
gi|190698496|gb|ACE92581.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
CIAT 652]
Length = 167
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 2 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 60 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 118
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + DL R++ ++
Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLARLR 149
>gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
Length = 170
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L+ AQ++ G + +E VA+IL + I V E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML G E L++ + + + + VEC G
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCGSEALLKHLETVLEIRKGDTTPNRLFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
AC AP++ +G D + +L RL+ ++D G I
Sbjct: 121 ACEMAPVMQVGDDYHGNLDTGRLDALLDRLRAEAGQVI 158
>gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora setae
KM-6054]
Length = 246
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
E+ISRYP SR SA++PLL Q ++G V+ I A L++ V +ATFYT
Sbjct: 26 ADARELISRYPQSR--SALLPLLHLVQAEDGCVTPTGIRFCAEQLELTTAEVTAVATFYT 83
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P HV VC T C + G +++ + + DG++S E +EC A
Sbjct: 84 MYRRRP-AGEYHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDGSVSIERIECNAA 142
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP+VM+ + +++ TPE +E++D GQ G
Sbjct: 143 CDYAPVVMVNWEFFDNQTPESAKELVDRLRAGQEVRPTRG 182
>gi|150375770|ref|YP_001312366.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium medicae
WSM419]
gi|150030317|gb|ABR62433.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
WSM419]
Length = 169
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +RYP +SA++P LM AQ++ G + +E VA IL + + V E+ TFY
Sbjct: 4 REEIEAAAARYPD--RRSAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELVTFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F P+G R H+Q+C CML G E L++ + K +DG + VEC G
Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLKHLETTLRIKKGETTADGVFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST-------GQGDTIRPG 183
AC AP++ +G D + +L RLE ++++F + PG
Sbjct: 121 ACEMAPVMQVGDDYHGNLDNARLEAMLESFRAAERVASVERAHPPSPG 168
>gi|227488704|ref|ZP_03919020.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
51867]
gi|227542297|ref|ZP_03972346.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091365|gb|EEI26677.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181897|gb|EEI62869.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
51866]
Length = 245
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ + E+ RYP QSA++P+L Q +G VS + +A++L M +V+
Sbjct: 29 LTDADVADLKELAGRYPN--PQSALLPMLHLVQSVDGKVSGEGVRRIASLLHMTEAQVIG 86
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWE 136
+ATFY+ + VG + V VC + C G + + + + + SDG + E
Sbjct: 87 VATFYSMYHTHEVG-KHLVGVCTSALCATMGGDIIYDAVKRHLELDGEEDTTSDGMFTLE 145
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--DRISSAPA 194
+EC AC AP++M+ + +++TP++ EI+D GQ + GP+I R +
Sbjct: 146 RIECNAACDFAPILMLNWEYMDNMTPKKAIEILDKLRDGQEVSSTRGPKITSWRDNERVL 205
Query: 195 GGLTSLLDNNSKKRGKKK 212
G + G
Sbjct: 206 AGFYDGRADEGPGAGPAS 223
>gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus
ATCC 33331]
Length = 293
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
EVI+RYP SR SA++PLL Q +EG+VSR + A+ L + V +ATFY
Sbjct: 29 EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCADQLGLTTAEVTAVATFY 86
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + + + + DG ++ E +EC
Sbjct: 87 TMYRRRP-SGDYQVGVCTNTLCAVMGGDAIFDRLKEHLGVGNDETTDDGKVTLEHIECNA 145
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TPE ++D G+ G
Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186
>gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680]
gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces
avermitilis MA-4680]
Length = 287
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+I+RYP SR SA++PLL Q +EG V+R ++ A+IL + V +ATFYT ++
Sbjct: 35 REIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMQFCADILGLTTAEVTAVATFYTMYR 92
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P V VC T C + G + + ++ + DG ++ E +EC AC
Sbjct: 93 RRP-SGDYQVGVCTNTLCAVMGGDAIFSALQDHLGVGNGETTDDGKVTLEHIECNAACDF 151
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ T + ++D G G
Sbjct: 152 APVVMVNWEFFDNQTVASAKRLVDDLRAGAPVEPTRG 188
>gi|297570900|ref|YP_003696674.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
haemolyticum DSM 20595]
gi|296931247|gb|ADH92055.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
haemolyticum DSM 20595]
Length = 226
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 19/211 (9%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ +I+RYP SR SA++PLL Q +G+ S I +VA+IL + +V +A
Sbjct: 11 EKFRQDAAAIIARYPQSR--SAIMPLLHLVQSVDGFCSPRGITLVADILGLTRAQVSAVA 68
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+Q++ P G +V VC C + G + + + + DG ++ E++E
Sbjct: 69 TFYSQYRRHPNGE-YNVGVCTNALCAVMGGDLIWDELSEYVGVGHDETTQDGKITLEQLE 127
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------- 186
C C AP+VM+ + +++ TPE ++I+D G GP+
Sbjct: 128 CNAGCDYAPVVMVNWEFFDNQTPETAKKIVDDIRAGHDIHPTRGPEKVHTFKEISRVLAG 187
Query: 187 ---DRISSAPAGGLTSLLDNNSKKRGKKKKD 214
++ PA G SL +
Sbjct: 188 FEDGHVNEGPAAGDASLRGLKIARAHDWTAP 218
>gi|327191025|gb|EGE58079.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
CNPAF512]
Length = 169
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 120
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + L R++ ++D
Sbjct: 121 ACEMAPVMQVGDDYHGGLDIARIDALLDRLR 151
>gi|302521198|ref|ZP_07273540.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
gi|318057839|ref|ZP_07976562.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actG]
gi|318078937|ref|ZP_07986269.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actF]
gi|302430093|gb|EFL01909.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
Length = 286
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFY
Sbjct: 25 EADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + E + + DG ++ E +EC
Sbjct: 83 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TPE ++D G+ G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 182
>gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
M045]
gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
M045]
Length = 298
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E+I+RYP SR SA++P+L Q +EG+V+R + A +L + V +ATFY+ +
Sbjct: 33 AREIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMRFCAELLGLTTAEVTAVATFYSMY 90
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + + + DG ++ E +EC AC
Sbjct: 91 RRRP-SGDYQVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDGKVTLEHIECNAACD 149
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ T E + ++D G + G
Sbjct: 150 FAPVVMVNWEFFDNQTVESAKRLVDELREGAEVSPTRG 187
>gi|254391141|ref|ZP_05006348.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
gi|294814398|ref|ZP_06773041.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
ATCC 27064]
gi|326442788|ref|ZP_08217522.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
gi|197704835|gb|EDY50647.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
gi|294326997|gb|EFG08640.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
ATCC 27064]
Length = 282
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+VISRYP SR SA++PLL Q +EG+VSR + A +LD+ V +ATFYT +
Sbjct: 34 AKDVISRYPDSR--SALLPLLHLVQSEEGFVSRTGMRFCAEVLDLTTAEVTAVATFYTMY 91
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P V VC T C + G + + E + + DG ++ E +EC AC
Sbjct: 92 RRGP-SGDYQVGVCTNTLCAVMGGDAIFEDLKEHLGVGNNGTTEDGKVTLEHIECNAACD 150
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP+VM+ + +++ TP ++D G+ + G
Sbjct: 151 FAPVVMVNWEFFDNQTPASARALVDDLRAGRPVSPTRG 188
>gi|208780264|ref|ZP_03247606.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
FTG]
gi|254375045|ref|ZP_04990525.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
gi|151572763|gb|EDN38417.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
gi|208743913|gb|EDZ90215.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
FTG]
Length = 162
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLGIKPGETTEDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161
>gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
Length = 158
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ I++YP R QSAV+ L AQE++GW++ + VA L M I V E
Sbjct: 2 LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L P G + + +C PC L G + + K+ + DG + +E
Sbjct: 62 VATFYNMYNLEPTG-KYKITICTNLPCALSGSNDSAKYIKQKLGIEFNQTTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
EC GAC +AP++++ ++ E +++++
Sbjct: 121 GECFGACGDAPVLLVNNKRMCSFMSEEMIDKLLREL 156
>gi|119897691|ref|YP_932904.1| NADH dehydrogenase subunit E [Azoarcus sp. BH72]
gi|119670104|emb|CAL94017.1| putative NADH-ubiquinone oxidoreductase chain E [Azoarcus sp. BH72]
Length = 159
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+ES ++ I++YPP + QSA + L AQ ++GW+S+ I VA+ L M I V E
Sbjct: 2 LSQESLQQIDREIAKYPPDQKQSAAMSALRIAQVEKGWLSKETIAFVADYLQMPAIAVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + L PVG R + VC PC L G E + K+ DG + +E
Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAAEYIKQKLGIDFNETTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
EC GAC +AP+++ T +T E++++++
Sbjct: 121 GECMGACGDAPVLLHNNHTMCSWMTTEKIDQLLADL 156
>gi|56707215|ref|YP_169111.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89257086|ref|YP_514448.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica LVS]
gi|110669685|ref|YP_666242.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|115315443|ref|YP_764166.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica OSU18]
gi|134301250|ref|YP_001121218.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156503300|ref|YP_001429365.1| NADH dehydrogenase I, subunit E [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009478|ref|ZP_02274409.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
tularensis subsp. holarctica FSC200]
gi|254368322|ref|ZP_04984340.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica 257]
gi|254368969|ref|ZP_04984982.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
holarctica FSC022]
gi|254371431|ref|ZP_04987432.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
FSC033]
gi|290952993|ref|ZP_06557614.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|295313813|ref|ZP_06804386.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|54114135|gb|AAV29701.1| NT02FT1740 [synthetic construct]
gi|56603707|emb|CAG44668.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144917|emb|CAJ80265.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica LVS]
gi|110320018|emb|CAL08051.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|115130342|gb|ABI83529.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
holarctica OSU18]
gi|134049027|gb|ABO46098.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254130|gb|EBA53224.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
holarctica 257]
gi|151569670|gb|EDN35324.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
FSC033]
gi|156253903|gb|ABU62409.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157121890|gb|EDO66060.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
holarctica FSC022]
gi|282158323|gb|ADA77714.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
tularensis subsp. tularensis NE061598]
Length = 162
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161
>gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8]
Length = 639
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F + ++E++ YP +SA++PLL Q E VS A IE +A IL + V
Sbjct: 11 FFAAKSELLSEILGSYPEYGRRSAIMPLLWAVQRAERQVSEARIEEIAAILGLTATEVKG 70
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY+ + PVG R H+Q+C T C L G +++ + ++ +++G S ++
Sbjct: 71 VMSFYSTYHERPVG-RYHLQLCSTLSCSLAGSDEMYDFLVTELGIVNGETDAEGLFSLQK 129
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP---GPQIDRISSAPA 194
VEC G+C AP++ + D YE +T R + +++A G+ + G + ++ P
Sbjct: 130 VECLGSCGTAPVLQVNDDYYERVTRPRCQALLEALRGGEQPEPQRERGGDSVGPEAAEPF 189
Query: 195 G 195
G
Sbjct: 190 G 190
>gi|333025115|ref|ZP_08453179.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
gi|332744967|gb|EGJ75408.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
Length = 279
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFY
Sbjct: 18 EADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFY 75
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ P V VC T C + G + + E + + DG ++ E +EC
Sbjct: 76 TMYRRKP-SGDYQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNA 134
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ TPE ++D G+ G
Sbjct: 135 ACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 175
>gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
DSM 44928]
gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
DSM 44928]
Length = 228
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++RYP S SA++PLL Q +EG+VS A IE A L ++ V ++TFYT +
Sbjct: 17 ADAIVARYPQSG--SALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMY 74
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVG HV VC T C + G + + + + DG ++ E +EC AC
Sbjct: 75 KRRPVGD-YHVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHIECNAACD 133
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
AP++ + + +D+ P++ ++D G+ GP
Sbjct: 134 FAPVMTVNWEFLDDMNPDKAVRVVDELRAGKEVHSTRGP 172
>gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
Length = 279
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 7/171 (4%)
Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
F E + EVI+RYP SR SA++PLL Q +EG+VSR I A +L +
Sbjct: 46 DFPAEVRARLEADAREVIARYPDSR--SALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTT 103
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFYT ++ P V VC T C + G + + E + + DG
Sbjct: 104 AEVTAVATFYTMYRRGP-SGDYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGK 162
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
++ E +EC AC AP+VM+ + +++ TP+ + ++D G+ G
Sbjct: 163 VTLEHIECNAACDYAPVVMVNWEFFDNQTPQSAKAMVDDLLAGRPVAPTRG 213
>gi|319787439|ref|YP_004146914.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
suwonensis 11-1]
gi|317465951|gb|ADV27683.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 175
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+ + ++ ++++PP R +SAV+ L AQEQ +GW+S I VA LD+ +
Sbjct: 19 LSDATRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLSDELIAAVAKYLDIPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ATFY+ F+ PVG V C C L G + L+ K+ K +DG + +
Sbjct: 79 EVATFYSMFETQPVGRNN-VAFCTNISCWLNGAQDLVAHAEKKLGCKLGESTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E C AC AP+V+I +E LT E+++E++D
Sbjct: 138 REEECVAACCGAPVVVINGHYHEKLTTEKVDELLDGLK 175
>gi|219847962|ref|YP_002462395.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aggregans DSM
9485]
gi|219542221|gb|ACL23959.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aggregans DSM
9485]
Length = 230
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + +I+RY + +SAV+PLL AQ+ G+++ AI VA IL++ V E+
Sbjct: 5 ETHQTEIESIIARY--AGKRSAVLPLLYLAQDTYGYLTDDAIREVAAILELPPTDVYEVV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FYT F PVGT +QVC PC G E+LI + + DG + + V+
Sbjct: 63 GFYTLFYDRPVGT-WVLQVCDDVPCCYCGAEELIAALKQTLGINEEETTPDGMFTLQRVK 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
C AC AP++ + D+TPER++ ++ + + G R +
Sbjct: 122 CLAACDRAPVLQANLNYVYDVTPERVQTLLADLRARAAEARKQG-VSGRFA 171
>gi|311744396|ref|ZP_07718198.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
15272]
gi|311312362|gb|EFQ82277.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
15272]
Length = 262
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ +++ + E+ RYP +R S ++P+L Q +G V+ IE A IL ++ V
Sbjct: 3 TLDDQTVGELREIAGRYPEAR--SGLLPMLHLVQSVQGHVTTEGIETCAEILGLSPAEVS 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFYT ++ P+GT HV VC T C + G + ++E + + +DG ++ E
Sbjct: 61 GVATFYTMYKRRPMGT-HHVGVCTNTLCAVMGGDAILERLQEHLDVANDETTADGAVTLE 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+EC AC AP++M+ + ++ TPE +++D G+ G
Sbjct: 120 HLECNAACDFAPVMMVNWEFFDHQTPESAVDLVDRLRAGEVVQATRG 166
>gi|118498237|ref|YP_899287.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
novicida U112]
gi|194324421|ref|ZP_03058194.1| NADH-quinone oxidoreductase, e subunit family [Francisella
tularensis subsp. novicida FTE]
gi|118424143|gb|ABK90533.1| NADH dehydrogenase I, E subunit [Francisella novicida U112]
gi|194321486|gb|EDX18971.1| NADH-quinone oxidoreductase, e subunit family [Francisella
tularensis subsp. novicida FTE]
Length = 162
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161
>gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
XylebKG-1]
gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
XylebKG-1]
Length = 285
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
EV++RYP SR SA++PLL Q +EG+VSR + A LD+ V +ATFY+
Sbjct: 30 ADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAETLDLTTAEVTAVATFYS 87
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P V VC T C + G + + + + + DG ++ E +EC A
Sbjct: 88 MYRRRP-SGDYQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAA 146
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP+VM+ + +++ TPE ++D G+ G
Sbjct: 147 CDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186
>gi|332678973|gb|AEE88102.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
Fx1]
Length = 162
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161
>gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. SIP3-4]
gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688]
gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. SIP3-4]
gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688]
Length = 157
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+ES ++ +++YP R Q+AV+ L AQ+++GW+S+ + VA L + I LE
Sbjct: 2 LSQESLAKIDRELTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY ++L PVG + VC CMLR + +++ + ++ DG + +E
Sbjct: 62 VASFYNMYELEPVGQ-YKITVCTNISCMLRDSDVIVDHLQERLGIGFNETTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC G C AP+ I E LT E+++ I++
Sbjct: 121 GECMGCCGGAPLFHINNKRMCEFLTKEKVDAILEELK 157
>gi|239943480|ref|ZP_04695417.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379]
gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
Length = 279
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
EV++RYP SR SA++PLL Q +EG+VSR I A LD+ V ++TFY+
Sbjct: 19 ADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGIAFCAETLDLTTAEVTAVSTFYS 76
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P V VC T C + G + + + + + DG ++ E +EC A
Sbjct: 77 MYRRRP-SGDYQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAA 135
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP+VM+ + +++ TPE +++D G+ G
Sbjct: 136 CDFAPVVMVNWEFFDNQTPESATQLVDDLIAGRTVEPTRG 175
>gi|254373578|ref|ZP_04989064.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
GA99-3549]
gi|151571302|gb|EDN36956.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
Length = 162
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161
>gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
quinquefasciatus]
gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
quinquefasciatus]
Length = 170
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 1 MS----VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+
Sbjct: 26 MSDNLFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWL 85
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+A+ VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC
Sbjct: 86 PISAMHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVC 144
Query: 117 RNKIHQKPLHRNSDGTLSW 135
+ K+ P DG +
Sbjct: 145 KKKLGISPGETTKDGKFTI 163
>gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM
43247]
gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM
43247]
Length = 706
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 10/194 (5%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
RYP SR SA++PLL Q ++G+++RA I A LD+ +V +ATFY+ ++ +P G
Sbjct: 55 RYPQSR--SALLPLLHLVQSEDGFITRAGILFCAAQLDLTAAQVASVATFYSMYRRNPTG 112
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
+ VC T C G + ++ + P +D ++ E VEC AC AP+VM
Sbjct: 113 E-YLIGVCTNTLCATLGGDDILGSVCEHLGIDPGDTTADSRITVEHVECNAACDFAPVVM 171
Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLTSLLDNN 204
+ + +++ TP+ E+++ G G Q R + G TS L
Sbjct: 172 VNWEFFDNQTPDTAIELVEDLRAGVPTEPSRGTGSLCSFRQTARTLAGLPEGPTSPLTLP 231
Query: 205 SKKRGKKKKDDKIS 218
+ + +++ S
Sbjct: 232 EVRGAVLRSEERAS 245
>gi|241667719|ref|ZP_04755297.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876263|ref|ZP_05248973.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842284|gb|EET20698.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 162
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILTHIEKKLGIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161
>gi|148244393|ref|YP_001219087.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
HA]
gi|146326220|dbj|BAF61363.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
HA]
Length = 157
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ I++YP R SAV+ L Q E + +S + I+ VA+ LDM I V E+ATF
Sbjct: 7 KNQIDVWIAKYPKDRQSSAVMQALKIVQAENKNILSASIIQEVADYLDMPDIVVQEVATF 66
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y + VG + ++ C CML G + LI+ NK+ K DG +S ++VEC
Sbjct: 67 YENYNYKKVG-KYVIRFCHNISCMLNGADDLIKHLENKLGVKTGEVTLDGLISVKKVECL 125
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GACV APM I + +E+LT +++++I+D
Sbjct: 126 GACVGAPMFQINEKYFENLTIDKIDKIVDNLK 157
>gi|167627157|ref|YP_001677657.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597158|gb|ABZ87156.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 162
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAKEDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTNDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161
>gi|62262937|gb|AAX78114.1| unknown protein [synthetic construct]
Length = 197
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 34 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 93
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 94 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 152
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 153 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 187
>gi|302543440|ref|ZP_07295782.1| NADH dehydrogenase I, E subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302461058|gb|EFL24151.1| NADH dehydrogenase I, E subunit [Streptomyces himastatinicus ATCC
53653]
Length = 276
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
EVI+RYP SR SA++PLL Q +EG V+R I A +LD+ V +ATFY
Sbjct: 25 EADAAEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGIRFCAEVLDLTTAEVTAVATFY 82
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T ++ V VC T C + G + + E ++ + DG ++ E +EC
Sbjct: 83 TMYRRKA-SGDYQVGVCTNTLCAVMGGDAIFEELQSHLELGNGETTEDGKVTLEHIECNA 141
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AC AP+VM+ + +++ T ++++D G+ T G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTVGSAKQLVDDLRAGRTVTPTRG 182
>gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus]
Length = 155
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 24 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMN 83
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+
Sbjct: 84 KVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGI 142
Query: 123 KPLHRNSDGTLSW 135
K D +
Sbjct: 143 KVGETTPDKLFTL 155
>gi|332184792|gb|AEE27046.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
3523]
Length = 162
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E
Sbjct: 8 SPQAREDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E
Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGQTTKDGRITLKE 126
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
VECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161
>gi|319943352|ref|ZP_08017634.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
51599]
gi|319743167|gb|EFV95572.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
51599]
Length = 173
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P S ++ ++ I++YP + QSAV+ L AQ++ GWVS A IE VA+ L M
Sbjct: 8 PVKRLLSAQAYQLIDREIAKYPADQKQSAVMGALTIAQDEVGWVSPAVIEDVADYLSMPP 67
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
I V E+ATFY + L VGT + VC PC LR +K E + K+ DG
Sbjct: 68 IAVYEVATFYNMYNLEEVGT-WKIGVCTCLPCALREGDKAGEYLKQKLGIDFGETTPDGR 126
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYED-LTPERLEEIIDAFSTGQ 176
+ E EC G+C +AP+ +I E + +L+ +ID +
Sbjct: 127 FTLIETECLGSCADAPICLINDKRVESFMDNAKLDALIDELRNKE 171
>gi|218510339|ref|ZP_03508217.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
Brasil 5]
Length = 172
Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 7 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVG H+Q+C CML E L+ + K D + VEC G
Sbjct: 65 TLFHSEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 123
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ +G D + L R++ ++
Sbjct: 124 ACEMAPVMQVGDDYHGGLDIARIDALLAKLR 154
>gi|149909801|ref|ZP_01898452.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36]
gi|149807133|gb|EDM67089.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36]
Length = 207
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 48/196 (24%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + +++ YP +SA++P L AQ+ G++ A +A ILD+ I V E+A
Sbjct: 12 AELTAPIADIVKCYPT--QRSAIMPALYLAQDTYGFLDETAYRAIAEILDIPEIWVFELA 69
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FYT ++ +G + ++Q+C PCMLRG L+ + ++ ++DG + VE
Sbjct: 70 SFYTLYKNKKIG-KYNLQLCTNVPCMLRGAYDLLGHLQTRLGINKGDTSTDGLFTLTTVE 128
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF---------STGQGDTIRPGPQIDRIS 190
C G+C AP +M+ + + +L+ ER+++++D + + P +++ +
Sbjct: 129 CIGSCDLAPAMMVNETYHTNLSKERVDKLLDQLSQSSIKPSVEESKSSVEKSKPSVEKNN 188
Query: 191 SAPAGGLTSLLDNNSK 206
++ G ++ ++++
Sbjct: 189 ASTDKGPSTGTESSAG 204
>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1]
gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 159
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+E+ ++ +++YP + QSAV+ L AQ + GW+ + +A+ + M + V E
Sbjct: 3 LSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F SPVG + + VC PC+L G E+ + K+ +DG + E
Sbjct: 63 VATFYNMFNTSPVG-KHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLME 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+++ +++
Sbjct: 122 GECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159
>gi|166712610|ref|ZP_02243817.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|289665177|ref|ZP_06486758.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289667376|ref|ZP_06488451.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|325915543|ref|ZP_08177854.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
gi|325538259|gb|EGD09944.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
Length = 175
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424]
gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus
taiwanensis LMG 19424]
Length = 167
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VAN L+M + V E
Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEE 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E
Sbjct: 64 VATFYNMYDTKPVG-KYKLTVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDTIR 181
EC GAC +AP++++ ++ ++L+ +++ +
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSWMSDDKLDALVEELKAEAAKGGK 167
>gi|217970160|ref|YP_002355394.1| NADH dehydrogenase subunit E [Thauera sp. MZ1T]
gi|217507487|gb|ACK54498.1| NADH-quinone oxidoreductase, E subunit [Thauera sp. MZ1T]
Length = 159
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+ES ++ I++YPP + QSAV+ L AQ ++GW+ + IE VA L M I E
Sbjct: 2 LSQESLQQIDREIAKYPPDQTQSAVMAALRIAQVEKGWLPKELIEFVARYLGMPPIAAFE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + L+PVG R + VC PC L G + + K+ DG + +E
Sbjct: 62 VASFYNMYDLAPVG-RHKITVCTNLPCALSGGVHAADYIKEKLGIDFNETTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E++++++
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQMLAEL 156
>gi|237748887|ref|ZP_04579367.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
gi|229380249|gb|EEO30340.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
Length = 159
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SEES ++ + ++PP++ +SA I L AQ+++GW+S I+ VAN L + I V E
Sbjct: 3 LSEESYRKIDRELEKFPPTKKRSAAIAALTVAQDEKGWLSPDVIKEVANYLGLPAIAVGE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ F SPVG + + VC PC + G ++ R K+ + DG +
Sbjct: 63 VASFYSMFNTSPVG-KYKIAVCSNLPCEMTGSDQAAAYLRQKLGIEFGETTPDGLFTLVA 121
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC + P++M+ + + +T ++++ +++
Sbjct: 122 SECMGACGDGPVIMVNNKNMHMRMTNDKIDRLLEELKQ 159
>gi|325921407|ref|ZP_08183264.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
gi|325548165|gb|EGD19162.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
Length = 175
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
SE++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSEKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 613
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 6/186 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS + P + E ++ +I Y ++P+L QE+ G + A
Sbjct: 1 MSAHCHSHSTPAP---EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPAV 55
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A L++ V + +FY+ + P G + ++ C + PC ++G + L+E + ++
Sbjct: 56 QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H DG + E C G C AP + I + + +LT +++ +I+ + G+
Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174
Query: 181 RPGPQI 186
+ P
Sbjct: 175 KKLPYS 180
>gi|56478180|ref|YP_159769.1| NADH dehydrogenase subunit E [Aromatoleum aromaticum EbN1]
gi|56314223|emb|CAI08868.1| NADH dehydrogenase I, chain E [Aromatoleum aromaticum EbN1]
Length = 159
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S++S ++ I++YPP + QSAV+ L AQ + GW+++ IE VA LDM I E
Sbjct: 2 LSQKSLQQIDREIAKYPPDQKQSAVMSALRIAQIEMGWLAKETIEFVAGYLDMPAIAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + L PVG R + VC PC L G + + K+ DG + +E
Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAADYVKQKLGIDFNETTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ +T E++++++
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQLLADLEN 158
>gi|294624674|ref|ZP_06703344.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294666773|ref|ZP_06732007.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292601030|gb|EFF45097.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292603434|gb|EFF46851.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 175
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
SE++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSEKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|21231956|ref|NP_637873.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767917|ref|YP_242679.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991033|ref|YP_001903043.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
str. B100]
gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573249|gb|AAY48659.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
pv. campestris str. 8004]
gi|167732793|emb|CAP50987.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
pv. campestris]
Length = 175
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718]
gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas
europaea ATCC 19718]
Length = 162
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP R QSAV+ L AQ+++GW++ ++ +A+ L+M I V E
Sbjct: 6 LSTEALRKIDREVAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAIAVYE 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC L G + + + K+ +DG + +E
Sbjct: 66 VATFYNMYNLKPVG-KYKLTVCTNLPCALSGGNQTADYLKQKLGIGFNETTTDGLFTLKE 124
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
EC G+C +AP++++ +T ++++++++
Sbjct: 125 GECMGSCGDAPVLLVNNKRMCSFMTEDQIDKLLEEL 160
>gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 613
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L P++ + S+ V+ +++RY + ++P+L QE G++ + ++
Sbjct: 3 LHCHCGAPAASALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRIS 60
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
L++ V + +FY+ + P G + ++ C + PC ++G + L+E + ++
Sbjct: 61 CKLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAELGVPLK 119
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
H DG + E C G C AP + I + + +LT +++ +I+ + G+ + P
Sbjct: 120 HTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPY 179
Query: 186 I 186
Sbjct: 180 S 180
>gi|21243428|ref|NP_643010.1| NADH dehydrogenase subunit E [Xanthomonas axonopodis pv. citri str.
306]
gi|78048405|ref|YP_364580.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924679|ref|ZP_08186117.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas axonopodis
pv. citri str. 306]
gi|78036835|emb|CAJ24528.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544885|gb|EGD16230.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
Length = 175
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSDKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|58582855|ref|YP_201871.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624720|ref|YP_452092.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577692|ref|YP_001914621.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58427449|gb|AAW76486.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84368660|dbj|BAE69818.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188522144|gb|ACD60089.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 175
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K DG + +
Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTVDGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C AC APM++I +E LT E+++ ++D
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174
>gi|284992921|ref|YP_003411475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
obscurus DSM 43160]
gi|284066166|gb|ADB77104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
obscurus DSM 43160]
Length = 341
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E+ + E+I+RYP + +SA++P+L Q +G+V+ + + A L + V
Sbjct: 31 LTEQVRLEAREIIARYP--QPRSALLPMLHLVQSHQGYVTPEGVALCAEELGLTKAEVGA 88
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ P G R V VC T C + G +++ + + +DG+++ E
Sbjct: 89 VATFYTMYKRRPTG-RHLVSVCTNTLCAVLGGQRIFDALSRDLGVHHDETAADGSVTLEH 147
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC AP+V + + Y+ + E++ A G+ G
Sbjct: 148 AECLAACDYAPVVTVDYEFYDQQDVDSARELVAALRRGEKPHPTRG 193
>gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000]
gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein
[Ralstonia solanacearum GMI1000]
gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
CMR15]
Length = 167
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLTVCTNLPCALSGGERAADYLKQKLGIGFNETTADGTFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLKA 158
>gi|301631487|ref|XP_002944829.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial-like [Xenopus (Silurana) tropicalis]
Length = 163
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YPP + QSAV+ L Q+++GWVS+ + V+A IL M I V E+
Sbjct: 2 TEATKQRFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSQESEAVIAEILGMPQIAVHEV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LRG + + K+ + DG + ++
Sbjct: 62 TTFYNMYNQHPVG-KFKLNVCTNLPCQLRGGYEALHHLEAKLGVQMGETTPDGLFTLQQC 120
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
EC GAC +AP++++ + + E+L++++D +G
Sbjct: 121 ECLGACADAPVMLVNDRNMCSFMDGEKLDQLVDGLKAAEGKA 162
>gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 614
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 6/186 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS + P + E ++ +I Y ++P+L QE+ G +
Sbjct: 1 MSAHCHSHSAPAP---EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPTV 55
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A L++ V + +FY+ + P G + ++ C + PC ++G + L+E + ++
Sbjct: 56 QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
H DG + E C G C AP + I + + +LT +++ +I+ + G+
Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174
Query: 181 RPGPQI 186
+ P
Sbjct: 175 KKLPYS 180
>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
Length = 574
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLE 77
+E+ ++ ++ RYP QSA++P LM AQ++ + + I VA ++D+ + +
Sbjct: 3 TEQLKNDIHRLLGRYPE--KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYG 60
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+AT+Y+ + + R H+QV P L G ++++ ++ + DG + E
Sbjct: 61 LATYYSMYNVEKPVGRYHLQVDTNIPATLMGAGEILDHLEKTLNIRAGETTPDGLFTLSE 120
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
VEC +C P++ + YE++T E+++ ++D+ G
Sbjct: 121 VECLASCGTCPVIQVNDVYYENMTREKVDSLLDSLRKG 158
>gi|269469172|gb|EEZ80714.1| NADH dehydrogenase I chain E [uncultured SUP05 cluster bacterium]
Length = 157
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ +++YP + SAV+ L Q E + +S AI+ VA+ LDM I E
Sbjct: 3 STKAKKQIDSWVAKYPEGKQSSAVMEALKIVQAENDNTLSTDAIQAVADYLDMPGIAAAE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + ++ C CML G + LI K+ K +G ++ ++
Sbjct: 63 VATFYENYNHKPVG-KHTIRFCHNISCMLNGADDLIAYLEKKLKVKTGEVTKNGLINVKK 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
VEC GACV APM IG YE+LT ++++EI+D
Sbjct: 122 VECLGACVGAPMFQIGDQYYENLTKQKIDEIVDGLK 157
>gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase chain E [Burkholderia rhizoxinica HKI
454]
gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 165
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP QSAV+ L AQ ++GW+S ++ VA+ L M I V E+
Sbjct: 10 SAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQEV 69
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT ++ +PVG + +C PC L G ++ E + K+ DG + +E
Sbjct: 70 ATFYTMYETAPVGQ-HKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEG 128
Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP+V++ ++ E+++++++
Sbjct: 129 ECFGACGDAPVVLLNNHRMCSFMSREKIDQLLEEL 163
>gi|254874053|ref|ZP_05246763.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254840052|gb|EET18488.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 156
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78
+++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+
Sbjct: 3 KDTLYHIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +EV
Sbjct: 63 ATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
ECQGAC +PM+ + K YE+LT E++ +IID+
Sbjct: 122 ECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 155
>gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16]
gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16]
Length = 167
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E
Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E
Sbjct: 64 VATFYNMYDTKPVG-KFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDTIR 181
EC GAC +AP++++ ++ ++L+ ++D +
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDELKAEAAKGGK 167
>gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
Length = 158
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + QSAV+ L AQ+++GW++ ++ VA L M I V E
Sbjct: 2 LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT + L P+G + + VC PC L G + + R K+ +DG + +E
Sbjct: 62 VATFYTMYNLQPIG-KYKITVCTNLPCALSGANEAVAHFREKLGIGFNETTADGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
EC GAC +AP++++ ++ ++++++++
Sbjct: 121 GECMGACGDAPVLLVNNKRMCSFMSNDKIDQLLEDL 156
>gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae
EF01-2]
gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae
EF01-2]
Length = 165
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SE + +++YP + QSAV+ L Q+++G VS + +VA+ L MA I V E+
Sbjct: 3 SEATLARFAREVAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY + PVG + VC PC LRG + ++ K+ DG + +
Sbjct: 63 ATFYNMYNRQPVGQ-YKINVCTNLPCQLRGGRQALQHLERKLALASGGTTDDGLFTLQSC 121
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGD 178
EC GAC +AP++++ T + ++L++++D + +
Sbjct: 122 ECLGACADAPVLLVNDRTMCSFMDGDKLDQLVDGLRQARQE 162
>gi|331699308|ref|YP_004335547.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
gi|326953997|gb|AEA27694.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
Length = 273
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S+ E + E+I+RYP SR SA++P+L Q EG VS+ I A +LD+ V
Sbjct: 36 SYDEVTRQRAKEIIARYPQSR--SALLPMLHLVQSVEGHVSQEGIRFCAELLDLTTAEVS 93
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK---------PLHR 127
+ATFYT ++ +P G V VC T C G + + + ++ +
Sbjct: 94 AVATFYTMYKRTPCGE-HLVSVCTNTLCAALGGDDIYARLQARLGTEDRPLGHEETAGEP 152
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ G+++ E EC AC AP++ + + +++ T E EE++DA G+ G
Sbjct: 153 GTPGSITLEHAECLAACDLAPVIQVNYEYFDNQTVESAEELVDALRRGEKPHPTRG 208
>gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
Length = 162
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ I++YP + QSAV+ L AQ+++GW++ ++ +AN L+M I V E
Sbjct: 6 LSMEALKKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAIAVYE 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L P+G + + VC PC L G + ++ + K+ DG + +E
Sbjct: 66 VATFYNMYNLKPIG-KYKLTVCTNLPCALSGSNQTVDYLKKKLDIGFNETTVDGLFTLKE 124
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T ++++++++
Sbjct: 125 GECMGACGDAPVLLVNNKRMCSFMTEDQIDKLLEELK 161
>gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
N1568]
Length = 157
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E
Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156
>gi|94309876|ref|YP_583086.1| NADH dehydrogenase subunit E [Cupriavidus metallidurans CH34]
gi|93353728|gb|ABF07817.1| NADH dehydrogenase chain E [Cupriavidus metallidurans CH34]
Length = 168
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E
Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E
Sbjct: 64 VATFYNMYDTKPVG-KHKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ ++++ +++ +
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSEQKIDALVEELKS 160
>gi|150026259|ref|YP_001297085.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
JIP02/86]
gi|149772800|emb|CAL44284.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
JIP02/86]
Length = 176
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLE 77
+E + E+ S YP + +SA++P+L Q+ E W+S + VA IL + + V E
Sbjct: 13 TEALMTRIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPVEVYE 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FYT + P+G + + C T+PC L G E L++ +K+ K +DG
Sbjct: 73 VVSFYTMYNRRPIG-KYMFEFCQTSPCCLNGTENLMDYTCDKLGVKVGEPTADGLFEVRG 131
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
VEC GAC APM+ +G E LT +++++I +
Sbjct: 132 VECLGACDYAPMMQLGDFYQEHLTEAKIDQLIADCKDNK 170
>gi|182412306|ref|YP_001817372.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
gi|177839520|gb|ACB73772.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
Length = 162
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ ++EVI+ YP +SA +PLL QE G++ A E +A L++ I V E+
Sbjct: 5 PETLQKIDEVITHYPT--KRSATLPLLHLIQEDIGYIPAEAHEWIAAKLEIQPINVYEVV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ P+G R V+VC T C LRG K+ E + + K + DG ++ E VE
Sbjct: 63 TFYPMFRQKPIGRRH-VKVCRTLSCALRGGYKVCEQFEKEFNTKTGEISPDGEVTVEFVE 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C +C AP+VMI D +E++ + +++ +
Sbjct: 122 CLASCGTAPVVMIDDDLHENVDAAKAKQLAEQIKA 156
>gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
HOxBLS]
gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
HOxBLS]
Length = 158
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SEES + + ++++P ++ +SA I L AQ+++GW+S + +A+ L + + + E
Sbjct: 3 LSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAIEE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ F PVG + + VC PC + G + + + K+H DG + E
Sbjct: 63 VASFYSMFNTRPVG-KYKIAVCCNLPCEMTGSDVTAQYLKEKLHIGFGETTPDGLFTLVE 121
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC GAC + P++++ Y +T +R++ +++
Sbjct: 122 SECMGACGDGPVILVNNKKMYMRMTKDRIDRLLEELK 158
>gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
Length = 167
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKQKLGIGFNETTADGNFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158
>gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22]
gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length = 287
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 7/171 (4%)
Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
F ++ + EV++RYP SR SA++PLL Q +EG V+R + A++L +
Sbjct: 19 DFPDDVRARLERDAAEVVARYPDSR--SALLPLLHLMQAEEGHVTRTGVRFCADVLGLTT 76
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFY+ ++ P V VC T C + G + + E ++ + DG
Sbjct: 77 AEVTAVATFYSMYRRRP-SGDYQVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGK 135
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
++ E +EC AC AP+VM+ + +++ T + + ++D G G
Sbjct: 136 VTLEHIECNAACDFAPVVMVNWEFFDNQTVDSAKRLVDDLRDGAEVAPTRG 186
>gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
[Neisseria flavescens SK114]
gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
[Neisseria flavescens SK114]
Length = 157
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +++ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157
>gi|300782455|ref|YP_003762746.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
gi|299791969|gb|ADJ42344.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
Length = 285
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F + E+I+RYP SR SA++P+L Q +G+VS+ I A LD++ V
Sbjct: 49 FDADIHAKAQELIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCAKQLDLSDAEVSA 106
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---------LHRN 128
+ATFYT ++ P G V VC T C G + + + + + + N
Sbjct: 107 VATFYTMYKRKPCGE-HLVSVCTNTLCAAMGGDAIYKRLQTHLGSEAEPLGHNETAGTPN 165
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
G+++ E EC AC AP++ + + +++ T E+ ++DA G+ G
Sbjct: 166 EPGSITLEHAECLAACDLAPVIQVNYEYFDNQTEEKAVALVDALQAGKKPAPTRG 220
>gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
Length = 157
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +++ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTAEAIDKKLAELK 157
>gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
taxon 014 str. F0314]
Length = 157
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELK 157
>gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
PSI07]
gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
PSI07]
Length = 167
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G ++ + + K+ +DGT + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGDRAADYLKQKLGIGFNETTADGTFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158
>gi|320449686|ref|YP_004201782.1| NADH-quinone oxidoreductase subunit E [Thermus scotoductus SA-01]
gi|320149855|gb|ADW21233.1| NADH-quinone oxidoreductase, subunit E [Thermus scotoductus SA-01]
Length = 181
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ ++ E ++YPP +SA++PLL R Q++EGW+ IE +A ++ V+
Sbjct: 3 FFDDKQDFLEETFAKYPPEGRRSAIMPLLRRVQQEEGWIRPERIEEIAQLVGTTATEVMG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ +Q P G R H+QVC T C L G ++L + + P DG S ++
Sbjct: 63 VASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTETLGIGPGEVTPDGLFSVQK 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQ 176
VEC G+C AP+V + + E +T RLE +++ G+
Sbjct: 122 VECLGSCHTAPVVQVNDEPYVECVTRARLEALLEGLKAGK 161
>gi|194366600|ref|YP_002029210.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia R551-3]
gi|194349404|gb|ACF52527.1| NADH-quinone oxidoreductase, E subunit [Stenotrophomonas
maltophilia R551-3]
Length = 175
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ +S++PP R +SAV+ L AQEQ GW++ I VA LD+ +
Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG V +C C L G E ++ C K+ K +DG + +
Sbjct: 79 EVASFYSMFETEKVGRNN-VAICTNISCWLNGAEDIVRHCEKKLGIKHGESTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C C APM++I +E LT E+++E++D
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174
>gi|190575274|ref|YP_001973119.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia K279a]
gi|190013196|emb|CAQ46829.1| putative respiratory-chain NADH dehydrogenase I, 24 kDa subunit
[Stenotrophomonas maltophilia K279a]
Length = 175
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA LD+ +
Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIAGVAKYLDLPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG V +C C L G E ++ C K+ K DG + +
Sbjct: 79 EVASFYSMFETEKVGRNN-VAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C C APM++I +E LT E+++E++D
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174
>gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum
CFBP2957]
gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
CFBP2957]
Length = 167
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158
>gi|256371184|ref|YP_003109008.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007768|gb|ACU53335.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
DSM 10331]
Length = 208
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F E A E++ YP +SAV+PL AQEQ+GW++ AI +A ++ V
Sbjct: 4 FEGEFAARAEELVGLYPE--RRSAVLPLCHLAQEQDGWLTPEAIRHIAELVGQTPAEVQG 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
A+FY L PVG R V +C C+LR ++L+E + DG ++ EE
Sbjct: 62 AASFYDMLHLEPVG-RYVVGICTNIACLLRDGDRLLEAAEELLGVGVGGTTPDGLITLEE 120
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ--GDTIRPGPQIDRISSAP 193
VEC C AP V + + +TP EE++ G+ G+ G +AP
Sbjct: 121 VECVAHCDKAPAVQVNYRYFGPVTPTSFEELVGQLRRGELDGEVPPHGVLSRVRRAAP 178
>gi|312200063|ref|YP_004020124.1| NADH-quinone oxidoreductase E subunit [Frankia sp. EuI1c]
gi|311231399|gb|ADP84254.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EuI1c]
Length = 274
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
RYP R +SA++PLL Q +EG V+ I+ A L + V +A+FYT ++ PVG
Sbjct: 53 RYPVGRQRSALLPLLHLVQAEEGCVTAEGIDFCAGQLGITAAEVQAVASFYTMYKRHPVG 112
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
V VC C L G + + + K+ +DGT++ E EC AC AP++
Sbjct: 113 D-WLVSVCTNLSCSLVGGQDVYDRLSKKLGVGHDQTTADGTITLEHAECLAACDYAPVMT 171
Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ + Y+ + E E I++A + G+ G
Sbjct: 172 VNYEFYDGVDTEAAEGIVEALARGERPLPTRG 203
>gi|254525004|ref|ZP_05137059.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
SKA14]
gi|219722595|gb|EED41120.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
SKA14]
Length = 175
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ +S++PP R +SAV+ L AQEQ GW++ I VA LD+ +
Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG V +C C L G E ++ C K+ K DG + +
Sbjct: 79 EVASFYSMFETEKVGRNN-VAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C C APM++I +E LT E+++E++D
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174
>gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
NRL30031/H210]
gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
NRL30031/H210]
Length = 157
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156
>gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
meningitidis alpha153]
Length = 157
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156
>gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
Length = 157
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +++ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157
>gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134]
gi|72118081|gb|AAZ60344.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
JMP134]
Length = 168
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ LDM + V E
Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEE 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ E + K+ +DG + +E
Sbjct: 64 VATFYNMYDTKPVG-RFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
EC GAC +AP++++ ++ ++L+ ++D
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDEL 158
>gi|261856546|ref|YP_003263829.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
neapolitanus c2]
gi|261837015|gb|ACX96782.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
neapolitanus c2]
Length = 165
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVL 76
S+ + ++ +S+YPP + QSAV+ L Q Q G+++ ++ +A L+M I V
Sbjct: 9 LSDHTRHEIDHWLSKYPPEQKQSAVLAALRETQHQNEGYLTTDLMDAIAEYLEMPPISVY 68
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ATFY+ + P G R HV +C C L G ++++ C K+ K DG + +
Sbjct: 69 EVATFYSMLETKPCG-RHHVSICTNISCALMGSDEIVAHCEKKLGIKLGESTPDGRIYLK 127
Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E EC AC PM+ + YE LTP++++ I+D
Sbjct: 128 VEEECLAACDGGPMMQVDHVYYERLTPQKVDAILDKL 164
>gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 614
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ S+ V+ +++RY + ++P+L QE G++ + ++ L + V
Sbjct: 14 ALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCQLKVPGSDVF 71
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY+ + P G + ++ C + PC + G E ++ + ++ K +D + E
Sbjct: 72 GVMSFYSMYTWQPKG-KYVIRFCESPPCHIAGAENMLHFMQEELGIKVGETTADSLFTLE 130
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
C G C AP + I + + +LT +++ +I+ + G+ + P
Sbjct: 131 TTACLGICEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPYS 180
>gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
[Salinibacter ruber DSM 13855]
gi|83757864|gb|ABC45977.1| NADH-ubiquinone oxidoreductase 24 kda subunit, putative
[Salinibacter ruber DSM 13855]
Length = 249
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 8 EEEFQPSSFS-----FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
++ +FS +++E + +YP Q+A++ +L AQE+ G+++ I+
Sbjct: 38 PDQDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQ 95
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+ A+ LDM + + +ATFY Q+ GT + VC C + G ++ K+
Sbjct: 96 LCADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGV 154
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGD 178
DG + +E EC G+C +APM+ I +LTP+++++++++ G+
Sbjct: 155 HAGETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVP 211
>gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
Length = 157
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +++ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLTELK 157
>gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
BAA-1200]
Length = 157
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ ES ++ +++YP R +SAV+ L AQ ++GW++ IE VA+ + +A + E
Sbjct: 2 LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYNLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLIE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEQKLAELQ 157
>gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D]
gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
5_7_47FAA]
gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D]
gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
5_7_47FAA]
Length = 167
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158
>gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
Length = 307
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 8/197 (4%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ VI RYP SR SA++PLL Q ++G ++ A IE A L + V +ATFY+
Sbjct: 45 ADADVVIGRYPNSR--SALLPLLHLVQAEDGCITPAGIEFCAGRLGLTGAEVAAVATFYS 102
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P G V VC T C + G + ++ + ++DG ++ E +EC A
Sbjct: 103 MYRRDPTGDYY-VGVCTNTLCAIMGGDAILAALEEHLDLPHGGTSADGKVTLEHIECNAA 161
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRISSAPAGGLTSLL 201
C AP+VM+ + +++ TPE ++D+ +G+ + G R ++ G
Sbjct: 162 CDYAPVVMVNWEFFDNQTPESARSLVDSLRSGERVSPSRGAALCTFRETARILAGF---P 218
Query: 202 DNNSKKRGKKKKDDKIS 218
D + +
Sbjct: 219 DERPGAPAEGGTAGDAT 235
>gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
13091]
gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
13091]
Length = 157
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156
>gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M13399]
gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M01-240013]
gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M01-240013]
gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M04-240196]
Length = 157
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E
Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156
>gi|206901697|ref|YP_002250292.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
thermophilum H-6-12]
gi|206740800|gb|ACI19858.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
thermophilum H-6-12]
Length = 161
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ V E++ ++ + +I +L+ Q++ ++ I + LD++ ++ +ATF
Sbjct: 6 NFAKVEEILKKH--GYRKDNLIKILLDVQKEYRYLPEDVINYIGVALDISPAKIYGVATF 63
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G + + VC T C + G LI + +++ P D S ++V C
Sbjct: 64 YAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCL 122
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP+++I ++ Y +LTPE+++EI+ + +
Sbjct: 123 GACALAPVMVINEEVYGNLTPEKVKEILRNLKEREME 159
>gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J]
gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J]
Length = 167
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E
Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E
Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGTFTLKE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+L+ +I +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158
>gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus
KT]
gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT]
Length = 159
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S ES ++ +++YPP Q+AV+ L AQ ++GW+S+ I VA+ L + I
Sbjct: 1 MSLSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAA 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
LE+ATFY ++L PVG + + VC CMLR +++ + ++ D +
Sbjct: 61 LEVATFYNMYELEPVG-KYKITVCTNISCMLRDSAEIVAHLQKRLGIGFNETTPDNRYTL 119
Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
E EC G C AP++ I + +E LTPE++++I++
Sbjct: 120 REGECMGCCGGAPLLHINNTEMHEFLTPEKVDQILEGLEK 159
>gi|294506288|ref|YP_003570346.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
M8]
gi|294342616|emb|CBH23394.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
M8]
Length = 225
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 8 EEEFQPSSFS-----FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
++ +FS +++E + +YP Q+A++ +L AQE+ G+++ I+
Sbjct: 14 PDQDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQ 71
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+ A+ LDM + + +ATFY Q+ GT + VC C + G ++ K+
Sbjct: 72 LCADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGV 130
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGD 178
DG + +E EC G+C +APM+ I +LTP+++++++++ G+
Sbjct: 131 HAGETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVP 187
>gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822]
gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
parapertussis]
Length = 164
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V E
Sbjct: 3 LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVGT + VC PC LR EK + + K+ +DG + E
Sbjct: 63 VATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121
Query: 138 VECQGACVNAPM-VMIGKDTYEDLTPERLEEIIDAFST 174
EC GAC ++P+ ++ K +T E+L+ ++D +
Sbjct: 122 GECMGACGDSPVLILNNKHMCVRMTEEKLDALVDGLKS 159
>gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E subunit [Candidatus Koribacter
versatilis Ellin345]
gi|94550390|gb|ABF40314.1| NADH dehydrogenase subunit E [Candidatus Koribacter versatilis
Ellin345]
Length = 160
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
FS+ W E YP +S ++P L+ Q++ G++S AI +AN +++ + V
Sbjct: 1 MKFSDNLEKWFAEAQGHYPT--KRSPLVPFLLYVQDEVGYLSDEAIVEIANRVELTPLEV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ ++Y+ + P+G + +VQVC C+ RG E + E C+ + DG S
Sbjct: 59 RNVISYYSMLRTKPIG-KYNVQVCTNICCLQRGGEDIFEHCKKTLGIGHKQTTPDGLFSL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
EEVEC GAC AP V + D +E+LTPE ++ +I+++ +
Sbjct: 118 EEVECIGACSWAPAVQVNYDFHENLTPETMDAVIESYRKRE 158
>gi|226227064|ref|YP_002761170.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
gi|226090255|dbj|BAH38700.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
Length = 155
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F + ++++++RYP Q+A++P L Q+ GWVS A +E VA L++ V
Sbjct: 2 FVGAARAELDKILARYP--HKQAALLPALWMLQDARGWVSEAGMEEVAAALEITPAYVKG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSDGTLSWE 136
+ TFYT + PVGT +QVC TTPC + G E +++ + + DG +
Sbjct: 60 VVTFYTMYHQHPVGT-YFIQVCTTTPCNVCGAEDVVKAFLEHTGCEDLGLTSPDGKYTVI 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
EVEC GAC A V I D E +TPE + I+
Sbjct: 119 EVECLGACGFATPVQINNDYVESVTPESVPRILSELK 155
>gi|218295764|ref|ZP_03496560.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
gi|218243923|gb|EED10450.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
Length = 181
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ ++ ++YPP ++A++PLL R Q++EGW+ +E +A ++ V+
Sbjct: 3 FFDDKKEFLEATFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERVEEIARLVGTTATEVMG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ +Q P G R H+QVC T C L G ++L + ++ P DG S ++
Sbjct: 63 VASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTQELGIGPGEVTPDGLFSVQK 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQ 176
VEC G+C AP+V + + E +T RL+ +++ G+
Sbjct: 122 VECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKAGK 161
>gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I]
gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50]
gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
pertussis Tohama I]
gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
bronchiseptica RB50]
gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS]
Length = 164
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V E
Sbjct: 3 LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVGT + VC PC LR EK + + K+ +DG + E
Sbjct: 63 VATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC ++P++++ +T E+L+ ++D +
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKS 159
>gi|285017796|ref|YP_003375507.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e)
(ndh-1, chain e) (nuo5) oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283473014|emb|CBA15519.1| probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI
chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein
[Xanthomonas albilineans]
Length = 175
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ +
Sbjct: 19 LSDKTRAHIDHWLSKFPPERKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + +
Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLVAHAEKKLGCKLGQSTADGRVYLK 137
Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C C APM++I +E LT ++++ ++D
Sbjct: 138 REEECLAGCAGAPMMVINGHYHEHLTKDKVDALLDGL 174
>gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6]
gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6]
Length = 175
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS + +++YP + QSAV+ L AQ+ GWVS A + +A+ L M I V E
Sbjct: 13 FSAATLERFAREVAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHE 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY + PVG + VC PC+LR + +E K+ + +DG + ++
Sbjct: 73 VTTFYNMYNQQPVGQ-FKLNVCTNLPCLLRNGQAALEHLCQKLGVEDGGTTADGLFTVQK 131
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ ++L++++D
Sbjct: 132 CECLGACADAPVMLVNDRQMISYMSHDKLDQLVDTLKA 169
>gi|269218341|ref|ZP_06162195.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212200|gb|EEZ78540.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
str. F0332]
Length = 223
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 21 ESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + + E+++RYP +R SA++P+L Q +G+VS I + A++L + V +
Sbjct: 10 EERLRADSREIVARYPVAR--SALMPMLHLVQSVDGFVSPRGIALCADVLGLTRAEVSAV 67
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY+Q++ P G +V VC C + G +++ E + + DG ++ E +
Sbjct: 68 ATFYSQYRRHPNGE-YNVGVCTNALCAVMGGDEIWEALTSALGVGSDETTPDGKITLEAL 126
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC C AP+VM+ + +++ TP +I++ G+ G
Sbjct: 127 ECNAGCDYAPVVMVNWEFFDNQTPTSALQIVEDIRAGRDLHPTRG 171
>gi|134103326|ref|YP_001108987.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
NRRL 2338]
gi|133915949|emb|CAM06062.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
NRRL 2338]
Length = 241
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F E+ ++I RYP SR SA++P+L Q +G VS IE A LD++ V
Sbjct: 8 FGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTAEVSA 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGTL 133
+ATFYT ++ P G V VC T C G + + + +G+L
Sbjct: 66 VATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTPGEEGSL 124
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ E EC AC P++ + + Y++ TPE+ E++ A G+ G
Sbjct: 125 TLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRG 174
>gi|163848444|ref|YP_001636488.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aurantiacus
J-10-fl]
gi|222526372|ref|YP_002570843.1| NADH-quinone oxidoreductase subunit E [Chloroflexus sp. Y-400-fl]
gi|163669733|gb|ABY36099.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450251|gb|ACM54517.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus sp. Y-400-fl]
Length = 230
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + +++RY + +SAV+PLL AQ+ G+++ AI VA ILD+ V E+
Sbjct: 5 ETHQAEIEAIVARY--ASKRSAVLPLLYLAQDTYGYLTDEAIREVATILDLPPTDVYEVV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FYT F PVGT +QVC PC G E+LI + + + +DG + + V+
Sbjct: 63 GFYTLFYDRPVGT-WVLQVCDDVPCCFCGAEELISALKQALGIREEETTADGMFTLQRVK 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
C AC AP++ D D+TPER+E +++ + + G R +
Sbjct: 122 CLAACDRAPVLQANLDYVYDVTPERVEVLLNNLRARAAEARKRG-VSGRFA 171
>gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 164
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
++ FS+ES +I ++P +S ++P L Q +G+V ++ +A+ + ++
Sbjct: 4 AYQFSQESETRFQRLIPQFPS--KRSLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 61
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D
Sbjct: 62 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 120
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ +EV+C GAC P+ I YE+LTPE +E+I+
Sbjct: 121 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSELEK 162
>gi|291004455|ref|ZP_06562428.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
NRRL 2338]
Length = 244
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F E+ ++I RYP SR SA++P+L Q +G VS IE A LD++ V
Sbjct: 11 FGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTAEVSA 68
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGTL 133
+ATFYT ++ P G V VC T C G + + + +G+L
Sbjct: 69 VATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTPGEEGSL 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ E EC AC P++ + + Y++ TPE+ E++ A G+ G
Sbjct: 128 TLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRG 177
>gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas
sp. 3As]
Length = 170
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V E
Sbjct: 6 LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F PVG R + VC PC L G E + K+ DG + +E
Sbjct: 66 VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 124
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP +++ + PERL+ +++
Sbjct: 125 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 162
>gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 162
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
++ FS+ES +I ++P +S ++P L Q +G+V ++ +A+ + ++
Sbjct: 2 AYQFSQESETRFQRLIPQFPS--KRSLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 59
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D
Sbjct: 60 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 118
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ +EV+C GAC P+ I YE+LTPE +E+I+
Sbjct: 119 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSELEK 160
>gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
meningitidis alpha275]
gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
NDH-1, chain E) [Neisseria meningitidis 8013]
gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M6190]
gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
ES14902]
gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
961-5945]
gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
961-5945]
gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
G2136]
Length = 157
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 174
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
++ E Q + +E + +++YPP + QSAV+ L Q+++GWVS + V+A
Sbjct: 1 MSTESNQAAGSPVTEATRARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIA 60
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L M I V E+ TFY + + + VC PC LR +K + K+
Sbjct: 61 EVLGMPQIAVHEVTTFYNMYN-QQPLGKYKLNVCTNLPCQLRDGQKALHHLEKKLGIAMG 119
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
DG + ++ EC GAC +AP++++ T + E+L++++D +G
Sbjct: 120 ETTPDGLFTLQQCECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEG 172
>gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans]
gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans]
Length = 159
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ I+++P + QSAV+ L AQ++ GW+ ++ VA+ L M I V E
Sbjct: 3 LSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + + VC PC+L G E+ ++K+ +DG + E
Sbjct: 63 VATFYNMYDTKPVG-KHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTLIE 121
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ ++++ +++
Sbjct: 122 GECMGACGDAPVMIVNNKRMCSFMSDDKIDALVEELKK 159
>gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18]
gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18]
gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710]
Length = 157
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + ++ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
23834]
gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
23834]
Length = 157
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP R +SA++ L AQ ++GW+S IE VA+ + + ++ E
Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ SDG + E
Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTSDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156
>gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
gi|55980057|ref|YP_143354.1| NADH-quinone oxidoreductase subunit 2 [Thermus thermophilus HB8]
gi|2499324|sp|Q56221|NQO2_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 2; AltName:
Full=NADH dehydrogenase I chain 2; AltName: Full=NDH-1
subunit 2
gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109663|pdb|2FUG|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109671|pdb|2FUG|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109679|pdb|2FUG|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|258588589|pdb|3I9V|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588597|pdb|3I9V|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588605|pdb|3IAM|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588613|pdb|3IAM|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588621|pdb|3IAS|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588629|pdb|3IAS|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588637|pdb|3IAS|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588645|pdb|3IAS|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|296863605|pdb|3M9S|2 Chain 2, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|296863618|pdb|3M9S|B Chain B, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit NQO2 [Thermus thermophilus]
gi|46197846|gb|AAS82258.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
gi|55771470|dbj|BAD69911.1| NADH-quinone oxidoreductase chain 2 [Thermus thermophilus HB8]
Length = 181
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+
Sbjct: 3 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ +Q P G + H+QVC T C L G E+L + + P DG S ++
Sbjct: 63 VASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQK 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQ 176
VEC G+C AP++ + + E +T RLE ++ G+
Sbjct: 122 VECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161
>gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42]
gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY]
gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42]
gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY]
Length = 163
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YP + QSAV+ L Q+++GWVS + V+A L M I V E+
Sbjct: 3 TEATKQRFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LR + + K+ +DG + ++
Sbjct: 63 TTFYNMYNQQPVG-KYKLAVCTNLPCQLRRGQDALHHLEKKLGISMGETTADGLFTLQQC 121
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
EC GAC +AP++++ + + ++L++++D +G
Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMDDDKLDQMVDGLRAAEGK 162
>gi|302523881|ref|ZP_07276223.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
gi|302432776|gb|EFL04592.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
Length = 287
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P++ F ++ E+I+RYP SR SA++P+L Q +G+VS+ I A LD+
Sbjct: 46 PAADVFDADTHREAKEIIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCARHLDLTD 103
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH---------QK 123
V +ATFYT ++ P G V VC T C G + + + + +
Sbjct: 104 AEVTAVATFYTMYKRRPCGE-HLVSVCTNTLCAALGGDDIYRKLQTHLGSAEKPLGHEET 162
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
G+++ E EC AC P++ + + +++ TPE+ ++DA G+ G
Sbjct: 163 AGTPGEPGSITLEHAECLAACDLGPVLQVNYEYFDNQTPEQAVALVDALQAGKKPAPTRG 222
>gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
Length = 157
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus
denitrificans BC]
gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans
K601]
gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
denitrificans BC]
gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
denitrificans K601]
Length = 163
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YPP + QSAV+ L Q+++GW+S+ + +A L M I V E+
Sbjct: 3 TEATKERFAREVAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LRG + + K+ DG + ++
Sbjct: 63 TTFYNMYNQQPVG-KYKLAVCTNLPCQLRGGNQALHHLEAKLGITMGETTQDGLFTLQQC 121
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGD 178
EC GAC +AP +++ + ++L++++D +G
Sbjct: 122 ECLGACADAPTMLVNDRHMCSFMENDKLDQLVDGLRAAEGK 162
>gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
7299]
gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
7299]
Length = 158
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+ F +++E+ +YP + + ++P L QEQEGWVS A+ VA+ + I
Sbjct: 2 AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E ATFYT F L P+GT H+++C T CML G L + ++ I +P ++DG
Sbjct: 60 EVYEFATFYTMFNLKPIGT-YHIELCKTLSCMLMGANNLKKFIKDTIGIEPGQTSADGKF 118
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
EVEC GAC APM + +E+ T E L+ +I+
Sbjct: 119 HLSEVECLGACGGAPMFALNGQYHENQTVESLKNLIEECK 158
>gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
Length = 157
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1]
gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1]
Length = 175
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YPP + QSAV+ L Q+++GWVS + V+A+ L M I V E+
Sbjct: 15 TEATLARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEV 74
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + + + VC PC LR +K + K+ DG + ++
Sbjct: 75 TTFYNMYN-QQPLGKYKLNVCTNLPCQLRDGQKALHHLEKKLGITMGETTPDGLFTLQQC 133
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
EC GAC +AP++++ T + E+L++++D +G
Sbjct: 134 ECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEG 173
>gi|289641423|ref|ZP_06473587.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
glomerata]
gi|289508759|gb|EFD29694.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
glomerata]
Length = 270
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 1/166 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++I+RYP +SA++PLL Q ++G V+ +E A++L + V
Sbjct: 3 LTEETRAAAADIIARYPSGHSRSALLPLLHLVQAEDGCVTSEGVEFCASLLGITQAEVSA 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT ++ PVG V VC C L G E++ ++ +DGT++ E
Sbjct: 63 VATFYTMYKRRPVGD-WLVSVCTNLSCALLGGEEVYARLSQELGVGHDQTTADGTITLEH 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC AP++ + + ++ + P+ EI++A G+ G
Sbjct: 122 AECLAACDYAPVLTVNYEFFDQVDPQSASEIVEALRRGERPAPTRG 167
>gi|71906592|ref|YP_284179.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
gi|71846213|gb|AAZ45709.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
Length = 157
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E+ +++YP + QSA + L AQE++GW++ +IE VAN L M I E
Sbjct: 2 FSAETLQKFAREVAKYPADQKQSASMACLAHAQEEKGWLAPESIEAVANYLGMPPIAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + L PVG + + VC PC L G E ++K+ DG + +E
Sbjct: 62 VASFYNMYDLKPVG-KYKITVCTNLPCALSGGYHAGEYLQHKLGVGYGETTPDGKFTLKE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
EC GAC +AP+ ++ + PE+++++++
Sbjct: 121 GECMGACGDAPVFIVNNRSMCSHMHPEQIDKLLEECK 157
>gi|257054396|ref|YP_003132228.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
gi|256584268|gb|ACU95401.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
Length = 253
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
+P + F E ++ +RYP +R SA++P+L Q +G+VS+ I A LD
Sbjct: 9 SKKPETDPFGPEIEEQAQQLAARYPQAR--SALLPMLHLVQSVQGYVSQEGIAFCARQLD 66
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP----- 124
+ V +ATFYT ++ P G V VC T C G +++ + + +
Sbjct: 67 LTEAEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDEIYKRLSEHLGEDGKPLGH 125
Query: 125 ----LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
G+++ E EC AC P++ + + +++ TPE+ E++DA G+
Sbjct: 126 EETVGEPGEPGSITLEHAECLAACDFGPVLQVNYEYFDNQTPEKAVELVDALRRGEKPQP 185
Query: 181 RPG 183
G
Sbjct: 186 TRG 188
>gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I chain E [Neisseria lactamica ST-640]
gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06]
Length = 157
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|294056099|ref|YP_003549757.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
akajimensis DSM 45221]
gi|293615432|gb|ADE55587.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
akajimensis DSM 45221]
Length = 166
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ +++++ RYP R SA +PL QE +G++S AIE +A L++ I +LEI
Sbjct: 5 PETIEKIDKLVPRYPVMR--SAALPLCHLVQEDQGYLSPEAIEWIAERLELQPINILEIV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY + P G + HV+VC T PC L G + +++ K H + DG ++ E VE
Sbjct: 63 TFYPMLRTEPTG-KYHVRVCRTLPCALSGAYQTCARLEEELNVKVGHTSEDGLVTLEYVE 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
C C AP+VM+G+D Y D+ P++ E+ +G+ P
Sbjct: 122 CHADCGRAPVVMVGEDEYTDIDPDKAAELAAQMKSGELSNGIP 164
>gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
Length = 157
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + ++ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|154248926|ref|YP_001409751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
nodosum Rt17-B1]
gi|154152862|gb|ABS60094.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
nodosum Rt17-B1]
Length = 157
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ V +++ +Y + +I +L+ Q++ + R + + L + ++ +ATF
Sbjct: 4 TFDKVEKILEKY--GYKKEMLIKILLEVQKEYRHIPREVVNYIGVALGIPPAKIYGVATF 61
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G + +C T C + G L++ ++ KP D S ++V C
Sbjct: 62 YAQFSLKPKGE-YTILICDGTACHMEGSMSLVKAIEEEVGIKPGEVTPDLKFSLDKVGCL 120
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP ++I + Y +L PE+++EI+ + +
Sbjct: 121 GACALAPAMVINGEVYGNLKPEKVKEILRNLKERKAE 157
>gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58]
gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58]
gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
H44/76]
gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
CU385]
gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
H44/76]
Length = 157
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M01-240355]
Length = 157
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG + + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGVNAADYLKQKLGIGFGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEVIEKKLAEL 156
>gi|221068608|ref|ZP_03544713.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
KF-1]
gi|264677202|ref|YP_003277108.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
CNB-2]
gi|299530746|ref|ZP_07044161.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
gi|220713631|gb|EED68999.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
KF-1]
gi|262207714|gb|ACY31812.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
CNB-2]
gi|298721262|gb|EFI62204.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
Length = 163
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YP + QSAV+ L Q+++GWVS+ + V+A +L MA I V E+
Sbjct: 3 TEATRERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSQESEAVIAEVLGMAEIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LR K + +K+ K DG + ++
Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGYKALHHLEHKLGIKMGETTKDGLFTLQQS 121
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179
EC GAC ++P++++ ++ E+L+E++D +G
Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELVDGLRAAEGKA 163
>gi|91789112|ref|YP_550064.1| NADH-quinone oxidoreductase subunit E [Polaromonas sp. JS666]
gi|91698337|gb|ABE45166.1| NADH dehydrogenase subunit E [Polaromonas sp. JS666]
Length = 166
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SE++ + +++YP + QSAV+ L QE++G+VS + ++VA L M I V E+
Sbjct: 7 SEQTKARFDREVAKYPADQKQSAVMACLTIVQEEQGFVSAESEKLVAEYLGMTPIAVHEV 66
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LR + ++ +K+ +DG + ++
Sbjct: 67 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGARALKHLEHKLGISMGQTTADGLFTLQQS 125
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
EC GAC ++P++++ ++ E+L+++ID + +
Sbjct: 126 ECLGACADSPVMLVNDLTMCSFMSDEKLDQLIDGLKSAEAK 166
>gi|254805713|ref|YP_003083934.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
Length = 157
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ AI VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + ++ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
Length = 179
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V E
Sbjct: 15 LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F PVG R + VC PC L G E + K+ DG + +E
Sbjct: 75 VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 133
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP +++ + PERL+ +++
Sbjct: 134 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 171
>gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 157
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP R +SA++ L AQ ++GW++ IE VA+ + + ++ E
Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156
>gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491]
gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491]
gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M0579]
gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
M01-240149]
gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
NZ-05/33]
Length = 157
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGISYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156
>gi|217966956|ref|YP_002352462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
turgidum DSM 6724]
gi|217336055|gb|ACK41848.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
turgidum DSM 6724]
Length = 161
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ V E++ ++ + +I +L+ Q++ ++ I + LD+ ++ +ATF
Sbjct: 6 NFTKVEEILKKH--EYRKDNLIKILLDIQKEYRYIPEDVINYIGVALDIPPAKIYGVATF 63
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G + + VC T C + G LI + +++ P D S ++V C
Sbjct: 64 YAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCL 122
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP+++I ++ Y +LTPE+++EI+ +
Sbjct: 123 GACALAPVMVINEEVYGNLTPEKVKEILKNLKEREMK 159
>gi|291613542|ref|YP_003523699.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
ES-1]
gi|291583654|gb|ADE11312.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
ES-1]
Length = 161
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S++ +++ + +YP + QSAV+ L Q+++GW++ + +A + M + V E
Sbjct: 2 LSQQITTLIDKELKKYPADQRQSAVMAALRFVQDEKGWIAPDDMADIAAYIGMPQMAVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L P+G + + VC C L G ++ + ++ +DG E
Sbjct: 62 VATFYHMYNLKPMG-KYTLTVCTNLSCQLCGSDETLAHLNKRLGIGLGEVTADGKYGLRE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQ 176
EC GACV+APM I LT E++++I+ GQ
Sbjct: 121 GECMGACVDAPMFTINNKKLCGRLTSEKIDQILAELDGGQ 160
>gi|326201388|ref|ZP_08191260.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
DSM 2782]
gi|325988956|gb|EGD49780.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
DSM 2782]
Length = 164
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++E+++ + ++I +Y +R A+IP+L QE G++ ++ ++ L+++ + +
Sbjct: 11 TDENSLKLGKIIDKYKETR--GALIPVLHEVQEVYGYLPEDVLKEISEKLNVSLAEIYGV 68
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFYTQF L+P G R + +C T C ++G +++ + K+ DG S +
Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGDILDKFKQKLGIDVGQCTEDGKFSLDAC 127
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP++MI D + L P+ ++ I+ +
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLVPDDVDAILAKYKD 163
>gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
Length = 161
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ VI++YP + QSAV+ L AQ++ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG S
Sbjct: 63 ATFYTMYELKPVG-KHKLTLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGRFSL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEEL 159
>gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
gi|4981988|gb|AAD36494.1|AE001794_10 Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
Length = 164
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E++ +Y + +I +L+ QE ++ I V+ + + ++ +ATFY
Sbjct: 9 EKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYA 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF L P G + + VC T C + G ++++ + P + D S ++V C GA
Sbjct: 67 QFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGA 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP+++I + Y +LT ++++EI+ + +
Sbjct: 126 CALAPVMVINGEVYGNLTADKVKEILRKIKEKERE 160
>gi|121998540|ref|YP_001003327.1| NADH-quinone oxidoreductase subunit E [Halorhodospira halophila
SL1]
gi|121589945|gb|ABM62525.1| NADH dehydrogenase subunit E [Halorhodospira halophila SL1]
Length = 170
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
+ + ++ +++YP SA+IP L Q+ G W+ R+ + A+ + M
Sbjct: 11 LNADQRRRIDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRAS 70
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E+ATFY+ F L R V C C L G ++L+ K+ + DG ++
Sbjct: 71 AFEVATFYSMFHLDEPVGRHKVNFCTNISCCLNGADELVAYAEEKLGIRLGETTPDGRIT 130
Query: 135 WEE-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
EC AC APM+++ Y LT ER++EI+D
Sbjct: 131 LVREEECLAACTRAPMMVVDGHYYTHLTRERIDEILDGL 169
>gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
Length = 163
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ ++EVI+ YP +SA +PLL QE G++S A+E +A+ L + I VLE+
Sbjct: 5 PETLQRIDEVITHYPV--KRSATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHVLEVV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ P+G R ++VC T C L G K+ E + + + DG ++ E VE
Sbjct: 63 TFYPMFRRKPIGRRH-IKVCRTLSCALMGGYKVCETMQKEFDTHLNEVSPDGEVTVEFVE 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C +C AP+VMI + +E++TP R E+
Sbjct: 122 CLASCGTAPVVMIDETLHENVTPARARELAALIKQ 156
>gi|317057599|ref|YP_004106066.1| NADH-quinone oxidoreductase subunit E [Ruminococcus albus 7]
gi|315449868|gb|ADU23432.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 7]
Length = 163
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + E + EVI+++ ++P L AQ G++ +++A+ L ++
Sbjct: 8 PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S
Sbjct: 66 VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC AP++++ +D Y L PE++ +I+D++
Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPEQVAKILDSYK 163
>gi|160900608|ref|YP_001566190.1| NADH-quinone oxidoreductase subunit E [Delftia acidovorans SPH-1]
gi|160366192|gb|ABX37805.1| NADH-quinone oxidoreductase, E subunit [Delftia acidovorans SPH-1]
Length = 163
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YP + QSAV+ L Q+++GWVS + V+A L MA I V E+
Sbjct: 3 TEATKERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + P GT + VC PC LR K + +++ K DG + ++
Sbjct: 63 TTFYNMYNQRPTGT-YKLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQS 121
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179
EC GAC ++P++++ ++ E+L+E+ID +G
Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELIDGLRAAEGKA 163
>gi|253996969|ref|YP_003049033.1| NADH-quinone oxidoreductase subunit E [Methylotenera mobilis JLW8]
gi|253983648|gb|ACT48506.1| NADH-quinone oxidoreductase, E subunit [Methylotenera mobilis JLW8]
Length = 157
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E+ ++ +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E
Sbjct: 2 LSPEATTKIDYELTKYPADQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + LSPVG + V +C CMLRG ++++ ++K+ DG +E
Sbjct: 62 VATFYNMYDLSPVG-KYKVTICTNISCMLRGSDEIVNHLQSKLGVGFNEVTPDGKFCLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC G C AP++ + + +E LT ++++ II+
Sbjct: 121 GECMGCCGGAPLMHVNNTEMHEFLTTDKVDAIIEGLK 157
>gi|71275686|ref|ZP_00651971.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
Dixon]
gi|71897858|ref|ZP_00680084.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
Ann-1]
gi|170729493|ref|YP_001774926.1| NADH dehydrogenase subunit E [Xylella fastidiosa M12]
gi|71163577|gb|EAO13294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella
fastidiosa Dixon]
gi|71732413|gb|EAO34467.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella
fastidiosa Ann-1]
gi|167964286|gb|ACA11296.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
M12]
Length = 175
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + E+AT
Sbjct: 23 TRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVAT 82
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE- 139
FY+ F+ VG R +V C C L G E L+ K+ K +DG + + E
Sbjct: 83 FYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEE 141
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AC APM++I +E LT E++++++D
Sbjct: 142 CLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174
>gi|15836912|ref|NP_297600.1| NADH dehydrogenase subunit E [Xylella fastidiosa 9a5c]
gi|28198175|ref|NP_778489.1| NADH dehydrogenase subunit E [Xylella fastidiosa Temecula1]
gi|71897770|ref|ZP_00679996.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
Ann-1]
gi|182680809|ref|YP_001828969.1| NADH dehydrogenase subunit E [Xylella fastidiosa M23]
gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase, NQO2 subunit [Xylella fastidiosa
9a5c]
gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
Temecula1]
gi|71732325|gb|EAO34379.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella
fastidiosa Ann-1]
gi|182630919|gb|ACB91695.1| NADH-quinone oxidoreductase, E subunit [Xylella fastidiosa M23]
gi|307579277|gb|ADN63246.1| NADH dehydrogenase subunit E [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 175
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + E+AT
Sbjct: 23 TRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVAT 82
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE- 139
FY+ F+ VG R +V C C L G E L+ K+ K +DG + + E
Sbjct: 83 FYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEE 141
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AC APM++I +E LT E++++++D
Sbjct: 142 CLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174
>gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
OX99.30304]
Length = 157
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156
>gi|332285013|ref|YP_004416924.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
gi|330428966|gb|AEC20300.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
Length = 164
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GWVS I VA L++ I V E
Sbjct: 3 LSEQAYQKIDRELTKFPSDQQQSAIMAALTIAQEEKGWVSTEVIADVAAYLNVPAIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F VG R + VC PC L K E + K+ DG + E
Sbjct: 63 VATFYNMFNTHQVG-RFKITVCTNLPCALSDGVKAAEYVKQKLGIDFHETTPDGLFTLME 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+++ ++D
Sbjct: 122 GECMGACGDAPVMLMNNRHMCVRMSSEKIDAMLDELKQ 159
>gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147]
gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786]
Length = 161
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L+PVGT + +C PC G E E + K+ DG +
Sbjct: 63 ATFYTMYELAPVGT-HKITLCTNLPCQLGPHGGAEATAEYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEEL 159
>gi|169629224|ref|YP_001702873.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
abscessus ATCC 19977]
gi|169241191|emb|CAM62219.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
abscessus]
Length = 247
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
E++ RYP +SA++PLL Q ++G+V+ A IE A +++ V +A+FY+ +
Sbjct: 37 AKEILDRYPS--RRSALLPLLHLVQSEDGYVTTAGIEFCARQVELTSAEVTAVASFYSMY 94
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P G V VC T C + G + ++ ++ +P DG ++ E +EC C
Sbjct: 95 RREPTGD-YLVGVCTNTLCAVLGGDAILARLAGELGVRPGGTTEDGKVTLEHIECNAGCD 153
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
AP++M+ + +++ TP+ ++ G R G
Sbjct: 154 YAPVLMVNWEFFDNQTPDGAAALVQGLRRGHVPAPRRG 191
>gi|226227805|ref|YP_002761911.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
gi|226090996|dbj|BAH39441.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
Length = 158
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
RYP S IP L R QE+ G+++ + I+ + L + ++V E+ FYTQ
Sbjct: 10 EFERWKQRYPSDFTGSLTIPCLRRIQEERGYIADSDIDELVAYLGVPRMQVDEVIAFYTQ 69
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F P+G H+QVC C LRG E L+ K+ +P +DG + VEC +C
Sbjct: 70 FTRVPLG-NHHLQVCHNLSCSLRGAEGLVGYLCAKLGIQPGETTADGKFTLSTVECLASC 128
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
APM+M+ +E+LTP ++ +++
Sbjct: 129 GTAPMMMVNDTYHENLTPASVDALLEDL 156
>gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442]
gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442]
Length = 157
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + ++ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGEITPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|297625186|ref|YP_003706620.1| NADH-quinone oxidoreductase subunit E [Truepera radiovictrix DSM
17093]
gi|297166366|gb|ADI16077.1| NADH-quinone oxidoreductase, E subunit [Truepera radiovictrix DSM
17093]
Length = 191
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F + ++E++ RYP +SAV+PLL Q E +S A IE +A IL + V
Sbjct: 10 FFADKQDVLSEILGRYPEYGRRSAVMPLLWEVQRAERHISEARIEEIAEILGLHATEVKG 69
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY+ + PVG + H+Q+C T C L G +++ + + + +G S ++
Sbjct: 70 VMSFYSTYHELPVG-KYHLQICATLSCSLAGADEMYDFISEETGLVSGETDREGLFSLQK 128
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
VEC G+C AP++ + YE +TP R + ++ A G+
Sbjct: 129 VECLGSCGTAPVLQVNDTFYERVTPSRCKALLAALRRGEEPAP 171
>gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4]
gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4]
Length = 307
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ V++RYP SR SA++PLL Q ++G ++ A +E A L + V +ATFY+
Sbjct: 45 ADADVVVARYPNSR--SALLPLLHLVQAEDGCITPAGVEFCAGRLGLTGAEVAAVATFYS 102
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ P G V VC T C + G + ++ + +DG ++ E +EC A
Sbjct: 103 MYRRDPTGDYY-VGVCTNTLCAVMGGDAILAALEAHLDLPHGGTTADGKVTLEHIECNAA 161
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP+VM+ + +++ PE ++DA +G + G
Sbjct: 162 CDYAPVVMVNWEFFDNQNPESARSLVDALRSGDRVSPSRG 201
>gi|226944921|ref|YP_002799994.1| NADH dehydrogenase subunit E [Azotobacter vinelandii DJ]
gi|226719848|gb|ACO79019.1| NADH-ubiquinone oxidoreductase, chain E [Azotobacter vinelandii DJ]
Length = 164
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F SE + Y R +A I L Q+Q GWV AI + IL +
Sbjct: 5 IQTDRFVLSETERSAIEHETHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEILGI 62
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ R K+ P D
Sbjct: 63 PASDVEGVATFYSQIFRVPVG-RHVIRVCDSMTCFIGGHETVLAALRQKLGIVPGQTTRD 121
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VMI DT+ +LTPE +E++++A+
Sbjct: 122 GRFTLLPVCCLGNCDKAPAVMIDDDTFGNLTPEGIEQLLEAY 163
>gi|281412805|ref|YP_003346884.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
naphthophila RKU-10]
gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [Thermotoga maritima MSB8]
gi|281373908|gb|ADA67470.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
naphthophila RKU-10]
Length = 161
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E++ +Y + +I +L+ QE ++ I V+ + + ++ +ATFY
Sbjct: 6 EKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYA 63
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF L P G + + VC T C + G ++++ + P + D S ++V C GA
Sbjct: 64 QFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGA 122
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP+++I + Y +LT ++++EI+ + +
Sbjct: 123 CALAPVMVINGEVYGNLTADKVKEILRKIKEKERE 157
>gi|332526751|ref|ZP_08402853.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
[Rubrivivax benzoatilyticus JA2]
gi|332111154|gb|EGJ11186.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
[Rubrivivax benzoatilyticus JA2]
Length = 161
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+FSE + ++++P + QSAV+ L Q ++G VS+ A E +A L M I V
Sbjct: 1 MNFSEATLARFAREVAKFPADQKQSAVMACLAIVQHEQGHVSQEAEEAIAAYLGMPAIAV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ TFY + VG + + VC PC LR E ++ K+ +P DG +
Sbjct: 61 HEVTTFYNMYNQRRVG-KYKLNVCTNLPCQLRHGEHALDHVCKKLGVEPYGTTEDGLFTV 119
Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
+ EC GAC +AP++++ + ++ ERL+E+I+
Sbjct: 120 QPSECLGACADAPVMLVNDREMLSFMSDERLDELIETLRK 159
>gi|226355363|ref|YP_002785103.1| NADH dehydrogenase (quinone) subunit E [Deinococcus deserti VCD115]
gi|226317353|gb|ACO45349.1| putative NADH dehydrogenase (quinone), subunit E (NADH-quinone
oxidoreductase, subunit E) [Deinococcus deserti VCD115]
Length = 209
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 26 VNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V ++I RYP S +SA++PLL Q EG++S A + + + V + +FY+
Sbjct: 11 VADIIRRYPDSPQGRRSALMPLLREVQNAEGFISEARMAEIGALCGTTATEVRSVLSFYS 70
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ P G R H+QVC T C L G ++L + +++ +P DG S ++VEC G+
Sbjct: 71 TYHTVPTG-RHHLQVCSTLMCALAGSDELWDYLVSELDVQPGEVTPDGAFSVQKVECLGS 129
Query: 144 CVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDTI 180
C APM+ + YE++T + + ++ A GQ T
Sbjct: 130 CGTAPMMQVNDLGYYENVTRTKCDRLLSAMRAGQTPTP 167
>gi|163855991|ref|YP_001630289.1| NADH dehydrogenase subunit E [Bordetella petrii DSM 12804]
gi|163259719|emb|CAP42020.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
petrii]
Length = 167
Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQ+++GW+S +E VAN + + I V E
Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQDEKGWLSPEVLEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVG + + VC PC LR EK + + K+ DG + E
Sbjct: 63 VATFYNMFDVKPVG-KHKIAVCTNLPCALRDGEKAGDYLKRKLGIDYRETTPDGLFTLVE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC ++P++++ +T E+L+ ++
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVQGLKE 159
>gi|325681308|ref|ZP_08160837.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
gi|324106999|gb|EGC01286.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
Length = 163
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + E + EVI+++ ++P L AQ G++ +++A+ L ++
Sbjct: 8 PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S
Sbjct: 66 VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC AP++++ +D Y L P+++ +I+D++
Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPDQVAKILDSYK 163
>gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
Length = 157
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ + +YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAESLKQIDIELVKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|78044572|ref|YP_359585.1| Fe-hydrogenase subunit gamma [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit [Carboxydothermus hydrogenoformans
Z-2901]
Length = 161
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E++S+Y + A+IP+L AQE G++ R +E ++ L + + +V +ATFY
Sbjct: 14 KEKLKELLSQY--QGQKGALIPVLQGAQEIYGYLPREVMEEISRSLKIPFSKVYGVATFY 71
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF L P G R ++ C T C +RG K+ E +N++ D + E V C G
Sbjct: 72 AQFHLKPRG-RNVIRACLGTACHVRGGAKVFETLKNELGIGDGETTPDLRFTLESVACIG 130
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP++M+ DTY LTP++++EI+ +
Sbjct: 131 ACGLAPVIMVNNDTYGRLTPDKVKEILAKY 160
>gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243]
gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344]
gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b]
gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1]
gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229]
gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668]
gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247]
gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a]
gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH]
gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4]
gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98]
gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14]
gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91]
gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9]
gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210]
gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894]
gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177]
gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112]
gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215]
gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
9]
gi|237811586|ref|YP_002896037.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
pseudomallei MSHR346]
gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
GB8 horse 4]
gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
1655]
gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
S13]
gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
1710a]
gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
406e]
gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei
K96243]
gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344]
gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia
pseudomallei 1710b]
gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264]
gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1]
gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229]
gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
668]
gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a]
gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247]
gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
406e]
gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
S13]
gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
1655]
gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
9]
gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
pseudomallei MSHR346]
gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
GB8 horse 4]
gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
1710a]
Length = 161
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L+PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEEL 159
>gi|303239627|ref|ZP_07326152.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
CD2]
gi|302592798|gb|EFL62521.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
CD2]
Length = 164
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E+IS+Y +R A+IP+L AQE G++ + ++ L++ V + TFYT
Sbjct: 17 QKLQEIISKYKDTR--GALIPVLHEAQEVYGYLPIEVQKKISEGLNVPLAEVYGVVTFYT 74
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF L+P G + + VC T C ++G ++++ + K+ + + DG S + C GA
Sbjct: 75 QFSLNPKG-KYKISVCMGTACYVKGSGQILDKFKEKLGLEVGQCSEDGMFSLDACRCIGA 133
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP+VMI D Y L P+ +E II +
Sbjct: 134 CGLAPVVMINDDVYGRLVPDDIEGIIKKYKE 164
>gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
33394]
gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
33394]
Length = 157
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S + ++ +++YP + +SA++ L AQ + G+++ IE VA + + I E
Sbjct: 2 LSAQLLQQIDTELAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ +DG + E
Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIDYGETTADGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
EC GAC +AP++++ T + E +++ +
Sbjct: 121 GECMGACGDAPVMLLNNHTMCSYMDAEAIDKKLAEL 156
>gi|309389877|gb|ADO77757.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium praevalens
DSM 2228]
Length = 160
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Query: 17 SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
+EE V E+++RY + + +IP+L AQE+ G++ ++ +A L+++
Sbjct: 3 EMTEEKLAEFLKPVAEILARY--GKKERYLIPVLQEAQEEYGYLPEEVLKEIAIGLNLSL 60
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+V + TFY+QF P G ++VC T C +RG E+++ ++++ + D
Sbjct: 61 SQVYGVVTFYSQFHQEPRG-NNIIRVCMGTACHVRGGEEILNAIKDELKIEAGQTTEDLE 119
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ E V C GAC AP++MI DT+ LTPE + EII +
Sbjct: 120 FTLESVACIGACGLAPVIMINDDTHGRLTPESIPEIISKYK 160
>gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107]
Length = 157
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +S ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 SECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1]
gi|237877333|gb|ACR29666.1| ATP synthase subunit E [Burkholderia glumae BGR1]
Length = 161
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ V+++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG S
Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFSL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEEL 159
>gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090]
gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945]
gi|239999840|ref|ZP_04719764.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18]
gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140]
gi|240081586|ref|ZP_04726129.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
gi|240113868|ref|ZP_04728358.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae MS11]
gi|240116599|ref|ZP_04730661.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID18]
gi|240118823|ref|ZP_04732885.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID1]
gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1]
gi|240124362|ref|ZP_04737318.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID332]
gi|240126574|ref|ZP_04739460.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-92-679]
gi|240129039|ref|ZP_04741700.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-93-1035]
gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
gi|260439640|ref|ZP_05793456.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA
1090]
gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945]
gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
Length = 157
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +S ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E
Sbjct: 2 LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156
>gi|15802832|ref|NP_288859.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 EDL933]
gi|15832423|ref|NP_311196.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. Sakai]
gi|168748134|ref|ZP_02773156.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4113]
gi|168755037|ref|ZP_02780044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4401]
gi|168761276|ref|ZP_02786283.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4501]
gi|168767911|ref|ZP_02792918.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4486]
gi|168772989|ref|ZP_02797996.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4196]
gi|168780140|ref|ZP_02805147.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4076]
gi|168787192|ref|ZP_02812199.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC869]
gi|168798455|ref|ZP_02823462.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC508]
gi|195935662|ref|ZP_03081044.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. EC4024]
gi|208807945|ref|ZP_03250282.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4206]
gi|208812470|ref|ZP_03253799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4045]
gi|208821285|ref|ZP_03261605.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4042]
gi|209399385|ref|YP_002271694.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4115]
gi|217327662|ref|ZP_03443745.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. TW14588]
gi|254794177|ref|YP_003079014.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str.
TW14359]
gi|261223261|ref|ZP_05937542.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
str. FRIK2000]
gi|261259189|ref|ZP_05951722.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
str. FRIK966]
gi|291283526|ref|YP_003500344.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
str. CB9615]
gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. EDL933]
gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. Sakai]
gi|187771310|gb|EDU35154.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4196]
gi|188017168|gb|EDU55290.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4113]
gi|189002112|gb|EDU71098.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4076]
gi|189357595|gb|EDU76014.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4401]
gi|189362963|gb|EDU81382.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4486]
gi|189368261|gb|EDU86677.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4501]
gi|189372933|gb|EDU91349.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC869]
gi|189378906|gb|EDU97322.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC508]
gi|208727746|gb|EDZ77347.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4206]
gi|208733747|gb|EDZ82434.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4045]
gi|208741408|gb|EDZ89090.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4042]
gi|209160785|gb|ACI38218.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. EC4115]
gi|209765098|gb|ACI80861.1| NADH dehydrogenase I chain E [Escherichia coli]
gi|209765100|gb|ACI80862.1| NADH dehydrogenase I chain E [Escherichia coli]
gi|209765102|gb|ACI80863.1| NADH dehydrogenase I chain E [Escherichia coli]
gi|209765104|gb|ACI80864.1| NADH dehydrogenase I chain E [Escherichia coli]
gi|209765106|gb|ACI80865.1| NADH dehydrogenase I chain E [Escherichia coli]
gi|217320029|gb|EEC28454.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
str. TW14588]
gi|254593577|gb|ACT72938.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
str. TW14359]
gi|290763399|gb|ADD57360.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
str. CB9615]
gi|320192094|gb|EFW66739.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
str. EC1212]
gi|320641112|gb|EFX10591.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. G5101]
gi|320646500|gb|EFX15419.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. 493-89]
gi|320651597|gb|EFX19977.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. H 2687]
gi|320657349|gb|EFX25151.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320663051|gb|EFX30368.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. USDA
5905]
gi|320667869|gb|EFX34777.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. LSU-61]
gi|326339636|gb|EGD63447.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
str. 1125]
gi|326344098|gb|EGD67859.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
str. 1044]
Length = 166
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ +LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHANLTPEAIPELLERYK 166
>gi|313679589|ref|YP_004057328.1| NADH dehydrogenase subunit e [Oceanithermus profundus DSM 14977]
gi|313152304|gb|ADR36155.1| NADH dehydrogenase subunit E [Oceanithermus profundus DSM 14977]
Length = 190
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ W+ EV ++YP R +SA++PLL R Q+ EG+V ++ +A ++ V
Sbjct: 3 FFDDKQEWLAEVFAQYPEDRRRSALMPLLRRVQQDEGYVDFERMKEIAELVGTTATEVAG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY+ +Q P G + H+QVC T C L G ++L ++ P DG S +
Sbjct: 63 VMSFYSYYQGLPTG-KYHIQVCRTLSCKLAGADELWHTLTERLGILPGEVTPDGRFSLQA 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQG 177
VEC G+C P++ +G + E +T RLE +++ +
Sbjct: 122 VECLGSCHTGPVIQVGDEPYVERVTKARLEALLEGLMQDKP 162
>gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
NDH-1, chain E) [Neisseria meningitidis WUE 2594]
Length = 157
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E
Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K DG + E
Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKFGISYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ +T E +E+ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156
>gi|123446843|ref|XP_001312168.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
[Trichomonas vaginalis G3]
gi|55793665|gb|AAV65813.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Trichomonas
vaginalis]
gi|121894006|gb|EAX99238.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
[Trichomonas vaginalis G3]
Length = 201
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
F FS++S V+ ++++YP ++A IPLL Q + G +++ ++ ++ I+ +
Sbjct: 23 KDFKFSDQS--KVDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTA 80
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDG 131
RV E A FY+ F+ P V+VC C L G + + E + ++ DG
Sbjct: 81 GRVHETACFYSMFRFQPPN-NHIVEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDG 139
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ EEVEC GAC NAP++++ Y++LT E + II+ G+
Sbjct: 140 QFTLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGKSVK 187
>gi|187736102|ref|YP_001878214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426154|gb|ACD05433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
muciniphila ATCC BAA-835]
Length = 193
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+ + E +F + E +E ++ YP + +SAV+P+L Q++ G++S AI
Sbjct: 15 HQPSPGERFYPAFEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAW 74
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
V L+++ VL + TFY + H++VC T C + G + L + ++
Sbjct: 75 VGEKLNISAAHVLGVVTFYPGL-RQMCPGKNHIRVCRTLSCAMAGADSLFDAICTRLGID 133
Query: 124 --------PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
P+ + DG S E VEC C P +M+ YE +TPE LEE+I +
Sbjct: 134 KNGIDHHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQ 191
>gi|157363817|ref|YP_001470584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
lettingae TMO]
gi|157314421|gb|ABV33520.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
lettingae TMO]
Length = 159
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + V E++ ++ + +I +L+ Q+ + + +A L++ ++ +
Sbjct: 2 ERTFEKVEEILKKH--QYKKENLIRILLDVQKNYRHLPEDVVNYIAVALELPPAKIFGVG 59
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF L P G + VC T C + G L++ +++ KP D S ++V
Sbjct: 60 TFYSQFSLKPKGE-YTILVCDGTACHMEGSLSLLKAIEEELNIKPGEVTRDLKFSVDQVG 118
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
C GAC AP ++I + Y +LTPE++++II G+ +
Sbjct: 119 CLGACALAPAMVINDEVYGNLTPEKVKDIIRKLKEGEQNA 158
>gi|217076872|ref|YP_002334588.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
gi|217036725|gb|ACJ75247.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
Length = 157
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + V E++ ++ + +I +L+ Q++ + + + ++ LD+ ++ +A
Sbjct: 2 ERNFEKVEEILKKH--GYEKKNLIKILLDVQKEYRHIPKEVVNYLSVALDIPPAKIFGVA 59
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF L P G + +C T C + G LI+ ++ KP D S ++V
Sbjct: 60 TFYAQFSLKPKGE-YTILICDGTACHMEGSMSLIKAIEEEVGVKPGEVTQDLKFSLDKVG 118
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C GAC AP ++I + Y +LTPE+ +EI+ G
Sbjct: 119 CLGACALAPAMVINGEVYGNLTPEKTKEILRKLKEGDD 156
>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille]
gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille]
Length = 159
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++PP + QSAV+ L AQ++ W+ ++ VA+ L M I V E
Sbjct: 3 LSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG + + VC PC L G EK + K+ D + E
Sbjct: 63 VATFYNMYNTKPVG-KFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLVE 121
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ E+++ +++
Sbjct: 122 GECMGACGDAPVMLVNNKRMCSFMSDEKIDALVEELKK 159
>gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu]
Length = 161
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGACGDAPVLLVNNHKMCSFMSREKIDQLLEEL 159
>gi|220931475|ref|YP_002508383.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
orenii H 168]
gi|219992785|gb|ACL69388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
orenii H 168]
Length = 162
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++E+I +Y +IP+L AQE G++ +A L + +V + +FY
Sbjct: 14 LKKLDEIILKYKD--KPGPLIPVLHEAQELYGYLPEEVQSYIAEGLGVPVSKVSGVVSFY 71
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F P G + VC T C ++G E+++ + ++ + + DG + + C G
Sbjct: 72 SFFTTKPKGE-HTINVCMGTACYVKGAEEILNRLKEELGIEEGETSEDGKFTMVGMRCLG 130
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AC AP+V I Y +TPE++ EII+++
Sbjct: 131 ACSLAPVVTIDDKVYGKVTPEKMMEIIESYRK 162
>gi|254172735|ref|ZP_04879409.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
AM4]
gi|214032891|gb|EEB73719.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
AM4]
Length = 154
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
++ YPP S++IPLL R QE+ G++ R +E +A L + RV +ATFY QF+ P
Sbjct: 8 LTSYPP--EPSSLIPLLQRTQERFGYLPREVLERIAEYLGIPLSRVYGVATFYAQFRFEP 65
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+G + V++C T C + G +++ ++ + DG ++ E V C G C AP+
Sbjct: 66 LG-KYVVRICHGTACHVNGAVTIVQAITEELGIEEGQTTEDGLITLERVACLGCCSLAPV 124
Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQ 176
VMI + LTP+++ ++I G+
Sbjct: 125 VMINDKVFGKLTPDKVRKLIRKLREGK 151
>gi|293415578|ref|ZP_06658221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
gi|291433226|gb|EFF06205.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
Length = 166
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
+ QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HDNQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|148270499|ref|YP_001244959.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
petrophila RKU-1]
gi|170289106|ref|YP_001739344.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
gi|147736043|gb|ABQ47383.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
petrophila RKU-1]
gi|170176609|gb|ACB09661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
Length = 161
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E++ +Y + +I +L+ QE ++ I V+ + + ++ +ATFY
Sbjct: 6 EKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYA 63
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF L P G + + VC T C + G ++++ + P + D S ++V C GA
Sbjct: 64 QFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGA 122
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP+++I + Y +LT ++++EI+ + +
Sbjct: 123 CALAPVMVINGEVYGNLTADKVKEILRKIKEKERE 157
>gi|150390844|ref|YP_001320893.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
gi|149950706|gb|ABR49234.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
Length = 163
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E+ ++E+I R+ ++IP+L QE ++ + + V+A D++ ++ +A
Sbjct: 5 KENGDKIDEIIERH--RHNPGSIIPILQEIQEVFNYLPKDILAVIAEKTDISPAKIYGVA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF+L PVG + +C T C + G +K+ E N++ + DG + V
Sbjct: 63 TFYKQFRLKPVG-NYLILLCQGTACHVNGSKKIEETLYNELKIRDGETTEDGLFTLNNVA 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C +P++MI ++TY L PE++ +II
Sbjct: 122 CLGCCSLSPVMMINEETYGSLVPEQVIKIITELKN 156
>gi|283832285|ref|ZP_06352026.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
29220]
gi|291071929|gb|EFE10038.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
29220]
Length = 166
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDDDTHAHLTPEGIPELLERYK 166
>gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
Length = 163
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + +++YPP + QSAV+ L Q++ G+VS A+ +A L M I V E+
Sbjct: 3 TEATKARFAREVAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC+LR K +E K+ DG + ++
Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCLLRDGGKALEHLEQKLGISMGETTPDGLFTLQQC 121
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
EC GAC +AP++++ + + ++L++++D+ +
Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMGNDKLDQLVDSLRAAEAK 162
>gi|121604334|ref|YP_981663.1| NADH-quinone oxidoreductase subunit E [Polaromonas
naphthalenivorans CJ2]
gi|120593303|gb|ABM36742.1| NADH dehydrogenase subunit E [Polaromonas naphthalenivorans CJ2]
Length = 165
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SE++ + +++YP S+ QSAV+ L Q++ G+VS + ++VA L MA I V E+
Sbjct: 7 SEQTKALFDREVAKYPTSQKQSAVMACLQIVQQERGFVSAESEKLVAEYLGMAPIAVHEV 66
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LR K ++ +K+ DG + ++
Sbjct: 67 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGAKALQHLEHKLGVAMGETTKDGMFTLQQS 125
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQ 176
EC GAC ++P++++ ++ E+L+++ID + +
Sbjct: 126 ECLGACADSPVMLVNDIHMCSFMSNEKLDQLIDGLKSAE 164
>gi|16130220|ref|NP_416788.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
substr. MG1655]
gi|24113657|ref|NP_708167.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 301]
gi|26248672|ref|NP_754712.1| NADH dehydrogenase subunit E [Escherichia coli CFT073]
gi|30063711|ref|NP_837882.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 2457T]
gi|74312803|ref|YP_311222.1| NADH dehydrogenase subunit E [Shigella sonnei Ss046]
gi|82544763|ref|YP_408710.1| NADH dehydrogenase subunit E [Shigella boydii Sb227]
gi|89109103|ref|AP_002883.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
substr. W3110]
gi|91211577|ref|YP_541563.1| NADH dehydrogenase subunit E [Escherichia coli UTI89]
gi|110642489|ref|YP_670219.1| NADH dehydrogenase subunit E [Escherichia coli 536]
gi|110806248|ref|YP_689768.1| NADH dehydrogenase subunit E [Shigella flexneri 5 str. 8401]
gi|117624474|ref|YP_853387.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
gi|157154944|ref|YP_001463628.1| NADH dehydrogenase subunit E [Escherichia coli E24377A]
gi|157161773|ref|YP_001459091.1| NADH dehydrogenase subunit E [Escherichia coli HS]
gi|170019406|ref|YP_001724360.1| NADH dehydrogenase subunit E [Escherichia coli ATCC 8739]
gi|170081902|ref|YP_001731222.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
substr. DH10B]
gi|170683908|ref|YP_001744483.1| NADH dehydrogenase subunit E [Escherichia coli SMS-3-5]
gi|170767591|ref|ZP_02902044.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
TW07627]
gi|187730819|ref|YP_001881106.1| NADH dehydrogenase subunit E [Shigella boydii CDC 3083-94]
gi|188496197|ref|ZP_03003467.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
gi|191170105|ref|ZP_03031659.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
gi|193062229|ref|ZP_03043324.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
gi|193068223|ref|ZP_03049187.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
gi|194427174|ref|ZP_03059725.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
gi|194433323|ref|ZP_03065603.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
gi|194436177|ref|ZP_03068279.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
gi|209919733|ref|YP_002293817.1| NADH dehydrogenase subunit E [Escherichia coli SE11]
gi|215487498|ref|YP_002329929.1| NADH dehydrogenase subunit E [Escherichia coli O127:H6 str.
E2348/69]
gi|218548266|ref|YP_002382057.1| NADH dehydrogenase subunit E [Escherichia fergusonii ATCC 35469]
gi|218554841|ref|YP_002387754.1| NADH dehydrogenase subunit E [Escherichia coli IAI1]
gi|218559198|ref|YP_002392111.1| NADH dehydrogenase subunit E [Escherichia coli S88]
gi|218690445|ref|YP_002398657.1| NADH dehydrogenase subunit E [Escherichia coli ED1a]
gi|218695884|ref|YP_002403551.1| NADH dehydrogenase subunit E [Escherichia coli 55989]
gi|218700759|ref|YP_002408388.1| NADH dehydrogenase subunit E [Escherichia coli IAI39]
gi|218705815|ref|YP_002413334.1| NADH dehydrogenase subunit E [Escherichia coli UMN026]
gi|227887341|ref|ZP_04005146.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
gi|237704759|ref|ZP_04535240.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
gi|238901460|ref|YP_002927256.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
gi|253772793|ref|YP_003035624.1| NADH dehydrogenase subunit E [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254162294|ref|YP_003045402.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
gi|256017559|ref|ZP_05431424.1| NADH dehydrogenase subunit E [Shigella sp. D9]
gi|256022031|ref|ZP_05435896.1| NADH dehydrogenase subunit E [Escherichia sp. 4_1_40B]
gi|260844872|ref|YP_003222650.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
str. 12009]
gi|260856329|ref|YP_003230220.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
str. 11368]
gi|260869008|ref|YP_003235410.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
str. 11128]
gi|293405751|ref|ZP_06649743.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
gi|293410645|ref|ZP_06654221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
gi|293446622|ref|ZP_06663044.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
gi|297519442|ref|ZP_06937828.1| NADH dehydrogenase subunit E [Escherichia coli OP50]
gi|298381434|ref|ZP_06991033.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
gi|300818114|ref|ZP_07098326.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
gi|300822156|ref|ZP_07102298.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
gi|300896959|ref|ZP_07115440.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
gi|300903670|ref|ZP_07121586.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
gi|300918550|ref|ZP_07135140.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
gi|300924544|ref|ZP_07140508.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
gi|300931362|ref|ZP_07146693.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
gi|300936850|ref|ZP_07151739.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
gi|300948571|ref|ZP_07162664.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
gi|300956455|ref|ZP_07168744.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
gi|300981073|ref|ZP_07175345.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
gi|300983380|ref|ZP_07176564.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
gi|301024083|ref|ZP_07187797.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
gi|301026955|ref|ZP_07190348.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
gi|301049038|ref|ZP_07196023.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
gi|301303256|ref|ZP_07209381.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
gi|301328777|ref|ZP_07221825.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
gi|301647618|ref|ZP_07247414.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
gi|307138949|ref|ZP_07498305.1| NADH dehydrogenase subunit E [Escherichia coli H736]
gi|307311155|ref|ZP_07590799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
gi|309793164|ref|ZP_07687592.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
gi|312967583|ref|ZP_07781798.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
gi|312973456|ref|ZP_07787628.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
gi|331642923|ref|ZP_08344058.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
gi|331647940|ref|ZP_08349032.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
gi|331653727|ref|ZP_08354728.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
gi|331658367|ref|ZP_08359329.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
gi|331663800|ref|ZP_08364710.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
gi|331668983|ref|ZP_08369831.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
gi|331678231|ref|ZP_08378906.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
gi|331683956|ref|ZP_08384552.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
gi|332278569|ref|ZP_08390982.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
gi|84028748|sp|P0AFD2|NUOE_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E; AltName: Full=NUO5
gi|84028749|sp|P0AFD1|NUOE_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E; AltName: Full=NUO5
gi|84028750|sp|P0AFD3|NUOE_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [Escherichia coli CFT073]
gi|431019|gb|AAA03536.1| NADH dehydrogenase [Escherichia coli]
gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
substr. MG1655]
gi|1799646|dbj|BAA16114.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K12
substr. W3110]
gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 301]
gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 2457T]
gi|73856280|gb|AAZ88987.1| NADH dehydrogenase I chain E [Shigella sonnei Ss046]
gi|81246174|gb|ABB66882.1| NADH dehydrogenase I chain E [Shigella boydii Sb227]
gi|91073151|gb|ABE08032.1| NADH dehydrogenase I chain E [Escherichia coli UTI89]
gi|110344081|gb|ABG70318.1| NADH dehydrogenase I chain E [Escherichia coli 536]
gi|110615796|gb|ABF04463.1| NADH dehydrogenase I chain E [Shigella flexneri 5 str. 8401]
gi|115513598|gb|ABJ01673.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
gi|157067453|gb|ABV06708.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli HS]
gi|157076974|gb|ABV16682.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E24377A]
gi|169754334|gb|ACA77033.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli ATCC 8739]
gi|169889737|gb|ACB03444.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
substr. DH10B]
gi|170123925|gb|EDS92856.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
TW07627]
gi|170521626|gb|ACB19804.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli SMS-3-5]
gi|187427811|gb|ACD07085.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii CDC
3083-94]
gi|188491396|gb|EDU66499.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
gi|190909621|gb|EDV69206.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
gi|192931895|gb|EDV84494.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
gi|192958502|gb|EDV88941.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
gi|194414795|gb|EDX31066.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
gi|194418417|gb|EDX34506.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
gi|194424905|gb|EDX40890.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
gi|209912992|dbj|BAG78066.1| NADH dehydrogenase I chain E [Escherichia coli SE11]
gi|215265570|emb|CAS09973.1| NADH: ubiquinone oxidoreductase, chain E [Escherichia coli O127:H6
str. E2348/69]
gi|218352616|emb|CAU98397.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 55989]
gi|218355807|emb|CAQ88420.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
ATCC 35469]
gi|218361609|emb|CAQ99201.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI1]
gi|218365967|emb|CAR03711.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli S88]
gi|218370745|emb|CAR18558.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI39]
gi|218428009|emb|CAR08930.2| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli ED1a]
gi|218432912|emb|CAR13806.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli UMN026]
gi|222034041|emb|CAP76782.1| NadH-quinone oxidoreductase subunit E [Escherichia coli LF82]
gi|226901125|gb|EEH87384.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
gi|227835691|gb|EEJ46157.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
gi|238861869|gb|ACR63867.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
gi|242377918|emb|CAQ32687.1| NADH:ubiquinone oxidoreductase, chain E, subunit of soluble NADH
dehydrogenase fragment and NADH:ubiquinone
oxidoreductase I [Escherichia coli BL21(DE3)]
gi|253323837|gb|ACT28439.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974195|gb|ACT39866.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
gi|253978362|gb|ACT44032.1| NADH dehydrogenase subunit E [Escherichia coli BL21(DE3)]
gi|257754978|dbj|BAI26480.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
str. 11368]
gi|257760019|dbj|BAI31516.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
str. 12009]
gi|257765364|dbj|BAI36859.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
str. 11128]
gi|260448622|gb|ACX39044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli DH1]
gi|281179372|dbj|BAI55702.1| NADH dehydrogenase I chain E [Escherichia coli SE15]
gi|281601726|gb|ADA74710.1| NADH-quinone oxidoreductase subunit E [Shigella flexneri 2002017]
gi|284922273|emb|CBG35358.1| NADH-quinone oxidoreductase subunit E [Escherichia coli 042]
gi|291323452|gb|EFE62880.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
gi|291427959|gb|EFF00986.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
gi|291471113|gb|EFF13597.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
gi|294493972|gb|ADE92728.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli IHE3034]
gi|298278876|gb|EFI20390.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
gi|299879502|gb|EFI87713.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
gi|300299147|gb|EFJ55532.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
gi|300307686|gb|EFJ62206.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
gi|300316725|gb|EFJ66509.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
gi|300359227|gb|EFJ75097.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
gi|300396739|gb|EFJ80277.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
gi|300404326|gb|EFJ87864.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
gi|300408546|gb|EFJ92084.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
gi|300414285|gb|EFJ97595.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
gi|300419262|gb|EFK02573.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
gi|300451919|gb|EFK15539.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
gi|300458037|gb|EFK21530.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
gi|300460824|gb|EFK24317.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
gi|300525286|gb|EFK46355.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
gi|300529258|gb|EFK50320.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
gi|300841430|gb|EFK69190.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
gi|300844839|gb|EFK72599.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
gi|301074245|gb|EFK89051.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
gi|306908661|gb|EFN39158.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
gi|307554347|gb|ADN47122.1| NADH dehydrogenase I chain E [Escherichia coli ABU 83972]
gi|307626179|gb|ADN70483.1| NADH dehydrogenase subunit E [Escherichia coli UM146]
gi|308123450|gb|EFO60712.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
gi|309702597|emb|CBJ01925.1| NADH-quinone oxidoreductase subunit E [Escherichia coli ETEC
H10407]
gi|310332051|gb|EFP99286.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
gi|312287780|gb|EFR15685.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
gi|312946903|gb|ADR27730.1| NADH dehydrogenase subunit E [Escherichia coli O83:H1 str. NRG
857C]
gi|313651108|gb|EFS15507.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2a str.
2457T]
gi|315061577|gb|ADT75904.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli W]
gi|315136919|dbj|BAJ44078.1| NADH dehydrogenase subunit E [Escherichia coli DH1]
gi|315255219|gb|EFU35187.1| NADH dehydrogenase subunit E [Escherichia coli MS 85-1]
gi|315285915|gb|EFU45353.1| NADH dehydrogenase subunit E [Escherichia coli MS 110-3]
gi|315298116|gb|EFU57385.1| NADH dehydrogenase subunit E [Escherichia coli MS 16-3]
gi|315615554|gb|EFU96186.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 3431]
gi|320177167|gb|EFW52179.1| NADH-ubiquinone oxidoreductase chain E [Shigella dysenteriae CDC
74-1112]
gi|320178742|gb|EFW53705.1| NADH-ubiquinone oxidoreductase chain E [Shigella boydii ATCC 9905]
gi|320183380|gb|EFW58232.1| NADH-ubiquinone oxidoreductase chain E [Shigella flexneri CDC
796-83]
gi|320196152|gb|EFW70776.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli WV_060327]
gi|320199873|gb|EFW74462.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli EC4100B]
gi|323156435|gb|EFZ42590.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli EPECa14]
gi|323161619|gb|EFZ47504.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E128010]
gi|323168545|gb|EFZ54225.1| NADH-quinone oxidoreductase, E subunit [Shigella sonnei 53G]
gi|323171967|gb|EFZ57611.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli LT-68]
gi|323176790|gb|EFZ62380.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1180]
gi|323184396|gb|EFZ69772.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1357]
gi|323187990|gb|EFZ73285.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli RN587/1]
gi|323377843|gb|ADX50111.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli KO11]
gi|323936575|gb|EGB32862.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli
E1520]
gi|323941018|gb|EGB37205.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli E482]
gi|323944798|gb|EGB40864.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli H120]
gi|323952078|gb|EGB47952.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli H252]
gi|323956051|gb|EGB51804.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli H263]
gi|323961468|gb|EGB57078.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli H489]
gi|323967726|gb|EGB63138.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli M863]
gi|323973010|gb|EGB68204.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli TA007]
gi|323977514|gb|EGB72600.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli TW10509]
gi|324006665|gb|EGB75884.1| NADH dehydrogenase subunit E [Escherichia coli MS 57-2]
gi|324013175|gb|EGB82394.1| NADH dehydrogenase subunit E [Escherichia coli MS 60-1]
gi|324020881|gb|EGB90100.1| NADH dehydrogenase subunit E [Escherichia coli MS 117-3]
gi|324117837|gb|EGC11736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia coli E1167]
gi|325496680|gb|EGC94539.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
ECD227]
gi|327252555|gb|EGE64214.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli STEC_7v]
gi|330912110|gb|EGH40620.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli AA86]
gi|331039721|gb|EGI11941.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
gi|331043664|gb|EGI15802.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
gi|331048576|gb|EGI20652.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
gi|331056615|gb|EGI28624.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
gi|331059599|gb|EGI31576.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
gi|331064177|gb|EGI36088.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
gi|331074691|gb|EGI46011.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
gi|331078908|gb|EGI50110.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
gi|332088415|gb|EGI93533.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 5216-82]
gi|332090613|gb|EGI95709.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae
155-74]
gi|332093637|gb|EGI98695.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 3594-74]
gi|332100921|gb|EGJ04267.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
gi|332344066|gb|AEE57400.1| NADH oxidoreductase NuoE [Escherichia coli UMNK88]
gi|332754933|gb|EGJ85298.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 4343-70]
gi|332755334|gb|EGJ85698.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-671]
gi|332756245|gb|EGJ86596.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2747-71]
gi|332766104|gb|EGJ96314.1| nuoE [Shigella flexneri 2930-71]
gi|333001429|gb|EGK20997.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri VA-6]
gi|333002028|gb|EGK21594.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-218]
gi|333002652|gb|EGK22212.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-272]
gi|333016346|gb|EGK35677.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-304]
gi|333016536|gb|EGK35866.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-227]
Length = 166
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
Length = 161
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L+PVG + + +C PC G E + K+ DG +
Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATAAYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSLMSREKIDQLLEEL 159
>gi|296103966|ref|YP_003614112.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058425|gb|ADF63163.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 166
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F SE + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + ++++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166
>gi|289522153|ref|ZP_06439007.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503989|gb|EFD25153.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 161
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + E+++ P Q +IP+L Q + G++ A+ ++ L M + +
Sbjct: 10 TVDVVEKTKEIVA--PWKGKQGGLIPILQEVQREFGYLPEDALLTISRELKMPKAEIYGV 67
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY QF L P G R ++VC T C +RG +++E + + D + E V
Sbjct: 68 ATFYAQFHLKPRG-RHIIRVCRGTACHVRGSLQILEKIKQTLGIDENETTEDLRFTLEPV 126
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++M+ +DT+ +TP++++ I+D +
Sbjct: 127 ACLGACGLAPVMMVDEDTHGRMTPDKIQSILDRY 160
>gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera sp. 301]
gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera sp. 301]
Length = 157
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E
Sbjct: 2 LSPQATEKIDYELTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY + LSPVG + + +C CMLR ++++ + K+ DG +E
Sbjct: 62 VASFYNMYDLSPVG-KYKITICTNISCMLRDSDEIVNHLKTKLGVGFNEVTPDGKFCLKE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
EC G C AP++ + D +E LT E+++ II
Sbjct: 121 GECMGCCGGAPLMHVNNTDMHEFLTVEKVDAIIGELK 157
>gi|42524474|ref|NP_969854.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
Length = 159
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
F S+ V ++RY +SA+IP L AQ++ G+++ I ++ ++D+ R
Sbjct: 4 FKLSDSGLAAVKSELARYEA--KESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ E+ FYT F PVG + HVQVC C L G ++ + +++ K +DG +
Sbjct: 62 INEVFKFYTMFNQKPVG-KYHVQVCTNISCALEGGREMAKHICHELGVKFDQVTADGRFT 120
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+VEC G+C APM+ + +E LTPE ++
Sbjct: 121 VSKVECLGSCGTAPMMQVNDSYHEKLTPETAMNLLRGMK 159
>gi|324112817|gb|EGC06793.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Escherichia fergusonii B253]
Length = 166
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166
>gi|283786353|ref|YP_003366218.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
ICC168]
gi|282949807|emb|CBG89430.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
ICC168]
Length = 166
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F SE + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + ++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166
>gi|158319327|ref|YP_001511834.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
gi|158139526|gb|ABW17838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
Length = 170
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
+ S + + ++S+Y + ++I +L QE ++ A+ ++ + +
Sbjct: 12 AMEISAQDEDKLKSILSKY--EGKKGSLISILQDVQEYYNYLPMDALNYISVETGIKPAK 69
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ +ATFYTQF+L PVG + + +C T C + G + + E + ++H + D +
Sbjct: 70 IHGVATFYTQFRLKPVGEK-LIMLCQGTACHVNGSKAVEEAIKEELHIQDGETTEDNLFT 128
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
V C G C +P++MI DTY +LTPE+++ II + Q
Sbjct: 129 LINVACLGCCSLSPVMMINDDTYGNLTPEKVKSIIREIKSAQ 170
>gi|146296865|ref|YP_001180636.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410441|gb|ABP67445.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 160
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGGTTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V+I Y L PE +E I+ +
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLAPEDIENILSRY 160
>gi|315292242|gb|EFU51594.1| NADH dehydrogenase subunit E [Escherichia coli MS 153-1]
Length = 166
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSLVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|191166488|ref|ZP_03028318.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
gi|190903448|gb|EDV63167.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
Length = 166
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMYHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|125972859|ref|YP_001036769.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
ATCC 27405]
gi|256005729|ref|ZP_05430684.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
DSM 2360]
gi|125713084|gb|ABN51576.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Clostridium thermocellum ATCC
27405]
gi|255990302|gb|EEU00429.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
DSM 2360]
gi|316940903|gb|ADU74937.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
DSM 1313]
Length = 165
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+NE+I +Y + A++P+L AQE G++ + +A L++ V + TFY
Sbjct: 16 EQKLNEIIEKY--KNTKGALVPVLHEAQEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
TQF L+P G + +QVC T C ++G ++E + K+ SDG S E C G
Sbjct: 74 TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AC AP++MI D Y L P+ +E II+ +
Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164
>gi|312793477|ref|YP_004026400.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312876008|ref|ZP_07735997.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|311797206|gb|EFR13546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|312180617|gb|ADQ40787.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 160
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V+I Y L+ + +E+I+ +
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLSVDDVEDILSRY 160
>gi|57641549|ref|YP_184027.1| NADH dehydrogenase subunit E [Thermococcus kodakarensis KOD1]
gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus
kodakarensis KOD1]
Length = 154
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
I YPP S++IPLL R QE+ G++ R +E +AN L + RV +ATFY QF+ P
Sbjct: 8 IRSYPP--EPSSLIPLLQRTQERFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEP 65
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+G + V+VC T C + G + + + ++ + DG ++ E V C G C AP+
Sbjct: 66 LG-KYVVKVCHGTACHVNGAVNIAQALKEELGIEEGQTTEDGLVTLERVACLGCCSLAPV 124
Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+MI + + LTP+++ +++ G+
Sbjct: 125 IMINEKVFGKLTPDKVRKLVKQLKEGK 151
>gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001]
gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001]
Length = 161
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G + E + K+ +DG +
Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEEL 159
>gi|312127643|ref|YP_003992517.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
[Caldicellulosiruptor hydrothermalis 108]
gi|311777662|gb|ADQ07148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor hydrothermalis 108]
Length = 160
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
C GAC AP+V+I Y L+ + +E+I+
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLSVDDVEDIL 157
>gi|220929649|ref|YP_002506558.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
H10]
gi|219999977|gb|ACL76578.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
H10]
Length = 163
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++E+++ + ++I +Y +R A+IP+L QE G++S ++ ++ L+++ + +
Sbjct: 11 TDENSLKLGKIIDKYKGTR--GALIPVLHEVQEVYGYLSEDVLKEISEKLNVSLAEIYGV 68
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFYTQF L+P G R + +C T C ++G +++E + K+ DG S +
Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGEILEKFKEKLGIDVGQCTEDGKFSLDAC 127
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP++MI D + L P+ +E I++ +
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLLPDDVEAILEKYKD 163
>gi|256380661|ref|YP_003104321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
DSM 43827]
gi|255924964|gb|ACU40475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
DSM 43827]
Length = 254
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + F + + +I+RYP R SA++P+L Q EG VS A I A++LD++
Sbjct: 15 PGAVVFDQGTTDRARAIIARYPVPR--SALLPMLHLVQSVEGHVSTAGIAFCADLLDLSA 72
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------- 124
V +ATFYT ++ P G V VC T C G + + R+ +
Sbjct: 73 AEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDDIYAKLRDHLGADGKPLGHEET 131
Query: 125 -LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ G+++ E EC AC AP+V + + +++ TP+ E++ + G+ G
Sbjct: 132 SGEPGAPGSVTLEHAECLAACDLAPVVQVNYEYFDNQTPDGALEMVKSLQAGEKPHPTRG 191
>gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
C4D1M]
gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
C4D1M]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G + E + K+ +DG +
Sbjct: 63 ATFYTMYETSPVG-KHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEEL 159
>gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S +E VA+ L M I V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G E E + K+ DG +
Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEEL 159
>gi|328950035|ref|YP_004367370.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
hydrothermalis DSM 14884]
gi|328450359|gb|AEB11260.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
hydrothermalis DSM 14884]
Length = 200
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ W+ EV +YPP +SA++PLL R Q +EG+VS A I +A ++ V
Sbjct: 3 FFDDKQDWLEEVFRQYPPEGRRSAIMPLLRRVQTEEGYVSEARIREIAELVGTTPTEVKG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY+ + + H+QVC T C L G ++L + + P DG S ++
Sbjct: 63 VMSFYSYYH-ELPTGKYHLQVCATLSCALAGADELWDYLVETLGILPGEVTPDGRFSIQK 121
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQG 177
VEC G+C AP+V + + E +T RL+ +++ +
Sbjct: 122 VECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKADRP 162
>gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit nuoE [Escherichia coli]
Length = 166
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S V + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAVEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|312135111|ref|YP_004002449.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
[Caldicellulosiruptor owensensis OL]
gi|311775162|gb|ADQ04649.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor owensensis OL]
Length = 160
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V+I Y L+ + +E I+ +
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160
>gi|22125528|ref|NP_668951.1| NADH dehydrogenase subunit E [Yersinia pestis KIM 10]
gi|45442152|ref|NP_993691.1| NADH dehydrogenase subunit E [Yersinia pestis biovar Microtus str.
91001]
gi|108808039|ref|YP_651955.1| NADH dehydrogenase subunit E [Yersinia pestis Antiqua]
gi|108812309|ref|YP_648076.1| NADH dehydrogenase subunit E [Yersinia pestis Nepal516]
gi|145599242|ref|YP_001163318.1| NADH dehydrogenase subunit E [Yersinia pestis Pestoides F]
gi|229838094|ref|ZP_04458253.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895293|ref|ZP_04510467.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
A]
gi|229898654|ref|ZP_04513799.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902653|ref|ZP_04517770.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
gi|270490165|ref|ZP_06207239.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
gi|294504366|ref|YP_003568428.1| ATP synthase subunit E [Yersinia pestis Z176003]
gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [Yersinia pestis KIM 10]
gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [Yersinia pestis biovar Microtus str.
91001]
gi|108775957|gb|ABG18476.1| NADH dehydrogenase I chain E [Yersinia pestis Nepal516]
gi|108779952|gb|ABG14010.1| NADH dehydrogenase I chain E [Yersinia pestis Antiqua]
gi|145210938|gb|ABP40345.1| NADH dehydrogenase I chain E [Yersinia pestis Pestoides F]
gi|229680100|gb|EEO76199.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
gi|229688202|gb|EEO80273.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694460|gb|EEO84507.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701779|gb|EEO89804.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
A]
gi|262362645|gb|ACY59366.1| ATP synthase subunit E [Yersinia pestis D106004]
gi|262366274|gb|ACY62831.1| ATP synthase subunit E [Yersinia pestis D182038]
gi|270338669|gb|EFA49446.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
gi|294354825|gb|ADE65166.1| ATP synthase subunit E [Yersinia pestis Z176003]
gi|320014610|gb|ADV98181.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 187
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE P +F S E + Y +R +A I L Q+Q GWV AI +A+
Sbjct: 24 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186
>gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans
ATCC 17616]
gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616]
gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC GAC +AP++++ ++ E+++++++
Sbjct: 122 KEGECFGACGDAPVLLVNNHKMCSFMSREKIDQLLEEL 159
>gi|149365542|ref|ZP_01887577.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
gi|218929638|ref|YP_002347513.1| NADH dehydrogenase subunit E [Yersinia pestis CO92]
gi|115348249|emb|CAL21177.1| NADH dehydrogenase I chain E [Yersinia pestis CO92]
gi|149291955|gb|EDM42029.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
Length = 172
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE P +F S E + Y +R +A I L Q+Q GWV AI +A+
Sbjct: 9 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 66
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 67 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 125
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 171
>gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815]
gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum
STM815]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L QE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ PVG + + +C PC L G + E + K+ DG +
Sbjct: 63 ATFYTMYETKPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGRFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEEL 159
>gi|291280353|ref|YP_003497188.1| NADH-quinone oxidoreductase subunit E [Deferribacter desulfuricans
SSM1]
gi|290755055|dbj|BAI81432.1| NADH-quinone oxidoreductase, E subunit [Deferribacter desulfuricans
SSM1]
Length = 171
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++E+ + Y R A IP+L + QE G++S+ ++ +A L+M+ + + TF
Sbjct: 19 DLSAIDEICAEY-KGRK-GATIPVLQKVQEHYGYLSKEMVDRIAENLNMSPHTIYGVITF 76
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF +P G + ++VC T C ++G ++ EV + K +SD + EEV C
Sbjct: 77 YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVTEEFGIKNGETSSDLKFTLEEVSCI 135
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
GAC AP++MI TY +LTPE+ EI ++
Sbjct: 136 GACGMAPVIMINDKTYGNLTPEKAREIFREYAK 168
>gi|222100043|ref|YP_002534611.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
gi|221572433|gb|ACM23245.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
Length = 164
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E++ ++ + +I +L+ QE ++ I V+ + + ++ +ATFY
Sbjct: 9 ERVEEILRKH--GYKRENLIKILLEIQELYRYLPEDVINYVSTAMGIPPAKIYGVATFYA 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF L P G + + VC T C + G ++++ + P + D S ++V C GA
Sbjct: 67 QFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGA 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP+++I + Y +LT E+++EI+ + +
Sbjct: 126 CALAPVMVINDEVYGNLTAEKVKEILRKIKEKERE 160
>gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003]
gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G E E + K+ +DG +
Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEEL 159
>gi|157144784|ref|YP_001452103.1| NADH dehydrogenase subunit E [Citrobacter koseri ATCC BAA-895]
gi|157081989|gb|ABV11667.1| hypothetical protein CKO_00511 [Citrobacter koseri ATCC BAA-895]
Length = 166
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166
>gi|237732316|ref|ZP_04562797.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
gi|226907855|gb|EEH93773.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
Length = 166
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEGIPELLERYK 166
>gi|146312471|ref|YP_001177545.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
gi|145319347|gb|ABP61494.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
Length = 166
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLDIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + ++++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIPDLLEQYK 166
>gi|317492620|ref|ZP_07951047.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919370|gb|EFV40702.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 166
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS + LA+EE F S+ + + Y R +A I L Q++ GWV A
Sbjct: 1 MSDQSLAKEEV----FVLSDSAREAIEHEKHHYEDPR--AASIEALKIVQKEHGWVPDGA 54
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A +LD+ V +ATFY+Q PVG R ++ C + C + G + + K+
Sbjct: 55 IYAIAEVLDIPAADVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHINGYQGIQAALERKL 113
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ KP DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 114 NIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPENVVELLEQYK 166
>gi|261340673|ref|ZP_05968531.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
ATCC 35316]
gi|288317087|gb|EFC56025.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
ATCC 35316]
gi|295098076|emb|CBK87166.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 166
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F SE + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYEIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 KVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + ++++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166
>gi|254468730|ref|ZP_05082136.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
gi|207087540|gb|EDZ64823.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
Length = 156
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+++ + +YP + QSAVI L Q GW+S+ I VA LDM I VLE+ATFY
Sbjct: 6 KKLIDKELKKYPSDKKQSAVIAALAIMQNDRGWLSKEDISEVALYLDMPEIAVLEVATFY 65
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F L VG R + +C CMLR + ++ + K+ DG +E EC G
Sbjct: 66 NMFDLKSVG-RYKLSICTNISCMLRDADHIVNHLKEKLQIDFNEVTRDGKFCLKESECMG 124
Query: 143 ACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
AC AP++ + +E+L +++++++
Sbjct: 125 ACGGAPLLTVNNQKMHENLNIDKVDQLLKELK 156
>gi|51596903|ref|YP_071094.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis IP 32953]
gi|170023804|ref|YP_001720309.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis YPIII]
gi|186895984|ref|YP_001873096.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis PB1/+]
gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [Yersinia pseudotuberculosis IP 32953]
gi|169750338|gb|ACA67856.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
YPIII]
gi|186699010|gb|ACC89639.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
PB1/+]
Length = 187
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE P +F S E + Y +R +A I L Q+Q GWV AI +A+
Sbjct: 24 AEPAAMPDAFELSTEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186
>gi|167772593|ref|ZP_02444646.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
17241]
gi|167665071|gb|EDS09201.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
17241]
Length = 164
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F+ + E + EVI+ + + A++P+L AQE G++ +++++ LD+
Sbjct: 9 PFTGTAEQEAKLREVIAAH--KGQKGALMPVLQGAQEIYGYLPIEVQKMISDGLDIPLEE 66
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ +ATFY+QF L+P G + VC T C ++G + + K+ + DG S
Sbjct: 67 IYGVATFYSQFTLNPKGQ-YKISVCLGTACYVKGAGDIFNRLQEKLGIESGMCTPDGKFS 125
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC AP++ I + Y LT + ++ I+ +
Sbjct: 126 LDACRCIGACGLAPVMTINDEVYGRLTVDDVDTILAKYR 164
>gi|222529286|ref|YP_002573168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor bescii DSM 6725]
gi|312622468|ref|YP_004024081.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
[Caldicellulosiruptor kronotskyensis 2002]
gi|222456133|gb|ACM60395.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor bescii DSM 6725]
gi|312202935|gb|ADQ46262.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor kronotskyensis 2002]
Length = 160
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V+I Y L+ + +++I+ +
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLSVDDVKDILSRY 160
>gi|298246354|ref|ZP_06970160.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
44963]
gi|297553835|gb|EFH87700.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
44963]
Length = 172
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SE++ + E+ RYP +R SAV+P L AQE+EG+++RA +E VA + M V +
Sbjct: 3 SEKAKERMRELAKRYPAAR--SAVMPSLYIAQEEEGYITRAGLEAVAEAVGMTIDDVESV 60
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT + G + V+VC + C LR C+ ++E ++ K DG + + V
Sbjct: 61 ATFYTMYHKQAPGKK-IVKVCTSISCYLRNCDSVMEHLEQRLGIKRGETTPDGNFTLQGV 119
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID----AFSTGQ 176
EC C AP++ + E++T E+ + +ID G+
Sbjct: 120 ECLATCGYAPVIQVNGQFVENVTLEKADALIDDLERELKQGK 161
>gi|302389264|ref|YP_003825085.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Thermosediminibacter oceani DSM
16646]
gi|302199892|gb|ADL07462.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Thermosediminibacter oceani DSM
16646]
Length = 162
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F +E V+E++ +Y + ++ +L AQ G++ VA LD+
Sbjct: 7 KDLEF-QEKLQKVDEMLKKY--KGQKGVLLQVLQEAQRIVGYLPLEVQIRVAEALDVTLS 63
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V TFY+ F L P G + ++VC T C ++G +K++ ++ K D
Sbjct: 64 EVYSTITFYSFFNLKPRG-KYQIRVCLGTACYVKGADKVLNRIEQELKIKVGETTEDLKF 122
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
S E C GAC AP+VMI D Y LTP+R+ EI+ +
Sbjct: 123 SLEACRCVGACGLAPVVMINDDVYGRLTPDRVPEILKNY 161
>gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
19624]
gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
19624]
Length = 181
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S + ++ +++YP + QSAV+ L Q+++GWVS A +A L M + V E
Sbjct: 13 LSAATLARFSKEVAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHE 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY + PVG + + VC PC LR +K + K+ +DG + +E
Sbjct: 73 VTTFYNMYNQRPVG-KFKLNVCTNLPCQLRDGQKALNHLAAKLGISKGETTADGLFTLQE 131
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
EC GAC +AP++++ T ++ ++L+++ID
Sbjct: 132 SECLGACADAPVMLVNDRTMCSFMSGDKLDQLIDGLK 168
>gi|193215668|ref|YP_001996867.1| NADH-quinone oxidoreductase subunit E [Chloroherpeton thalassium
ATCC 35110]
gi|193089145|gb|ACF14420.1| NADH-quinone oxidoreductase, E subunit [Chloroherpeton thalassium
ATCC 35110]
Length = 195
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P+ F + + SRYP + ++AV+ L AQ + GW+S A+++VA L+M
Sbjct: 35 PAEIVFDDADLQQIEAYKSRYP--KKEAAVMRTLWLAQTKFGWLSEDALKLVAKTLEMPP 92
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +A+FYT + P G + VC C L G ++ + K + +DG
Sbjct: 93 ADVFGVASFYTMYFKKPKGKTH-LAVCTNISCSLCGGYEIYNYLKEKFGLENGDVTADGK 151
Query: 133 LSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDA 171
LS EE EC G+C AP + + + E+LT E+LE +
Sbjct: 152 LSLEEAECLGSCGTAPAMQVNNGEYVENLTVEKLEAFLKE 191
>gi|238920564|ref|YP_002934079.1| hypothetical protein NT01EI_2676 [Edwardsiella ictaluri 93-146]
gi|238870133|gb|ACR69844.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 166
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F S+ + + I Y R +A I L Q++ GWV AI+ +A +L + V
Sbjct: 12 FVLSDSARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDPAIDAIAGVLGIPAADV 69
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG R V+ C + C + G + + + +P DG +
Sbjct: 70 EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLDIQPGETTFDGRFTL 128
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P +MI D ++ LTPER E+++ +
Sbjct: 129 LPTCCLGNCDKGPNMMIDDDLHDHLTPERAIELLERYK 166
>gi|156933125|ref|YP_001437041.1| NADH dehydrogenase subunit E [Cronobacter sakazakii ATCC BAA-894]
gi|156531379|gb|ABU76205.1| hypothetical protein ESA_00935 [Cronobacter sakazakii ATCC BAA-894]
Length = 166
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L + V +ATFY+Q PVG R ++ C + C + G + + + KP
Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMINEDTHSYLTPEGIPELLEQYK 166
>gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
carbinolicus DSM 2380]
gi|77544605|gb|ABA88167.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
Length = 159
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F++E V+ +I RY S +IPLL + QE G++ + E ++ ++ R+
Sbjct: 6 EFTKEQIDEVDGLIDRY--GAHPSGLIPLLEKVQELLGYLPLSIQEYISEKTHISPNRIY 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F + R VQ+C T C ++G + ++E N DG ++E
Sbjct: 64 GVVTFYSFFTMEAR-ARHRVQLCLGTACYVKGADAMVEKIENDYQINFGESTEDGRFTFE 122
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC AP+V+I + + +T + L+ I++ F+
Sbjct: 123 KARCVGACGLAPVVIIDGEVFGKVTVDSLDGILEQFA 159
>gi|294637176|ref|ZP_06715484.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
gi|291089640|gb|EFE22201.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
Length = 166
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F S+ + + I Y R +A I L Q++ GWV AAI+ +A +L + V
Sbjct: 12 FVLSDNARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDAAIDAIAEVLGIPAADV 69
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG R V+ C + C + G + + ++ +P DG +
Sbjct: 70 EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLNIQPGETTCDGRFTL 128
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P +MI +D ++ LTPER E+++ +
Sbjct: 129 LPTCCLGNCDKGPNMMIDEDLHDHLTPERAIELLERYK 166
>gi|302871904|ref|YP_003840540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor obsidiansis OB47]
gi|302574763|gb|ADL42554.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Caldicellulosiruptor obsidiansis OB47]
Length = 160
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V
Sbjct: 9 LTEENFRKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVYG 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFYT+F L P G + VC T C ++G +K+++ + + DG S E
Sbjct: 67 VATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIEA 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V+I Y L+ + +E I+ +
Sbjct: 126 TRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160
>gi|325003720|ref|ZP_08124832.1| NADH dehydrogenase subunit E [Pseudonocardia sp. P1]
Length = 276
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A E P S +F E + E I++YP R SA++PLL Q EG+VS+ I A
Sbjct: 25 APPEPSPVSPTFDELTRARTKETIAQYPEPR--SALLPLLHLVQSVEGYVSQDGIRYCAE 82
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--- 123
L++ V +ATFYT ++ SP G V VC T C G + + + + +
Sbjct: 83 ALELTTAEVSAVATFYTMYKRSPCGE-HLVSVCTNTLCAALGGDDIYARLQTHLGSEDRP 141
Query: 124 ------PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ G+++ E EC AC AP++ + + +++ + E E++DA G+
Sbjct: 142 LGHEETVGEPGTTGSITLEHAECLAACDLAPVLQVDYEYFDNQSVESAVELVDALRRGER 201
Query: 178 DTIRPG 183
G
Sbjct: 202 PQPTRG 207
>gi|311278758|ref|YP_003940989.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
gi|308747953|gb|ADO47705.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
Length = 166
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEQKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + ++++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166
>gi|152971213|ref|YP_001336322.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206579544|ref|YP_002237327.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
gi|238895802|ref|YP_002920538.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae NTUH-K2044]
gi|262043325|ref|ZP_06016454.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288934257|ref|YP_003438316.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
gi|290508460|ref|ZP_06547831.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
gi|330003559|ref|ZP_08304674.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
gi|150956062|gb|ABR78092.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|206568602|gb|ACI10378.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
gi|238548120|dbj|BAH64471.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259039349|gb|EEW40491.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888986|gb|ADC57304.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
gi|289777854|gb|EFD85851.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
gi|328536899|gb|EGF63198.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
Length = 166
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + ++++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166
>gi|16761250|ref|NP_456867.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765652|ref|NP_461267.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29141054|ref|NP_804396.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412778|ref|YP_149853.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180895|ref|YP_217312.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161502530|ref|YP_001569642.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|161612947|ref|YP_001586912.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167549676|ref|ZP_02343435.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994673|ref|ZP_02575764.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168229694|ref|ZP_02654752.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237342|ref|ZP_02662400.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242443|ref|ZP_02667375.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261659|ref|ZP_02683632.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465972|ref|ZP_02699842.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168817945|ref|ZP_02829945.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444429|ref|YP_002041585.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449482|ref|YP_002046378.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194470009|ref|ZP_03075993.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736216|ref|YP_002115394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197251007|ref|YP_002147283.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265747|ref|ZP_03165821.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197361712|ref|YP_002141348.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198246025|ref|YP_002216395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387224|ref|ZP_03213836.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929141|ref|ZP_03220284.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205353440|ref|YP_002227241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207857743|ref|YP_002244394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213052941|ref|ZP_03345819.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213417787|ref|ZP_03350899.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213427013|ref|ZP_03359763.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213581186|ref|ZP_03363012.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213612346|ref|ZP_03370172.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647301|ref|ZP_03377354.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213853109|ref|ZP_03382641.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224583189|ref|YP_002636987.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238912396|ref|ZP_04656233.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289829697|ref|ZP_06547238.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|60392848|sp|P0A1Y8|NUOE_SALTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|60392849|sp|P0A1Y9|NUOE_SALTI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127035|gb|AAV76541.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128528|gb|AAX66231.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|160863877|gb|ABX20500.1| hypothetical protein SARI_00574 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161362311|gb|ABX66079.1| hypothetical protein SPAB_00653 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403092|gb|ACF63314.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407786|gb|ACF68005.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194456373|gb|EDX45212.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711718|gb|ACF90939.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195631138|gb|EDX49698.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197093188|emb|CAR58632.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197214710|gb|ACH52107.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197244002|gb|EDY26622.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197289635|gb|EDY28998.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197940541|gb|ACH77874.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199604322|gb|EDZ02867.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321685|gb|EDZ06884.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273221|emb|CAR38184.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325189|gb|EDZ13028.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327492|gb|EDZ14256.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335581|gb|EDZ22345.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338362|gb|EDZ25126.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205345101|gb|EDZ31865.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349325|gb|EDZ35956.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206709546|emb|CAR33891.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467716|gb|ACN45546.1| ATP synthase subunit E [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261247531|emb|CBG25358.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994420|gb|ACY89305.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158883|emb|CBW18396.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913316|dbj|BAJ37290.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320086759|emb|CBY96531.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321222974|gb|EFX48045.1| NADH-ubiquinone oxidoreductase chain E [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322617071|gb|EFY13977.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617623|gb|EFY14522.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624747|gb|EFY21576.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322630296|gb|EFY27066.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634477|gb|EFY31210.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322639187|gb|EFY35879.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640050|gb|EFY36717.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645729|gb|EFY42253.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651505|gb|EFY47880.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656064|gb|EFY52363.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659417|gb|EFY55664.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665877|gb|EFY62060.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669883|gb|EFY66024.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673869|gb|EFY69966.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678627|gb|EFY74683.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683577|gb|EFY79591.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687653|gb|EFY83623.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322715374|gb|EFZ06945.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323130656|gb|ADX18086.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323193513|gb|EFZ78718.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323198418|gb|EFZ83520.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201932|gb|EFZ86994.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208530|gb|EFZ93469.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323209761|gb|EFZ94685.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218297|gb|EGA03007.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222946|gb|EGA07295.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227381|gb|EGA11546.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323232292|gb|EGA16395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235674|gb|EGA19758.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323241165|gb|EGA25201.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244907|gb|EGA28909.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323250026|gb|EGA33920.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251638|gb|EGA35506.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323254949|gb|EGA38740.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260329|gb|EGA43948.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323268095|gb|EGA51572.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270812|gb|EGA54250.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326624146|gb|EGE30491.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326628532|gb|EGE34875.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989258|gb|AEF08241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 166
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + ++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166
>gi|296140855|ref|YP_003648098.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
DSM 20162]
gi|296028989|gb|ADG79759.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
DSM 20162]
Length = 237
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
RYP R SA++PLL Q Q+G+++ A IE A L++ V+ +ATFY+ ++ P G
Sbjct: 46 RYPEPR--SALLPLLHLVQSQDGYITPAGIEFCARTLELTAADVISVATFYSMYRRGPTG 103
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
V VC TT C + G + ++ + +P DG ++ E +EC AC AP+VM
Sbjct: 104 E-YLVGVCTTTLCAVLGGDAILSALCEHLGIEPGGTTDDGRVTVERIECNAACDYAPVVM 162
Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ + ++D T ++D TG G
Sbjct: 163 VNWEFFDDQTVASARALVDGLRTGTAPLPTRG 194
>gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49]
Length = 161
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEEL 159
>gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens
T118]
gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens
T118]
Length = 162
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SEES + + +++YP + QSAV+ L Q++ G+VS + +VA L MA + V E+
Sbjct: 3 SEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY + PVG + + VC PC LR K ++ +K+ K DG + ++
Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGGKALKHLEHKLDIKMGETTPDGMFTLQQC 121
Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC ++P++++ T ++ ++L++++D
Sbjct: 122 ECLGACADSPVLLVNDQTMCSFMSDDKLDQLVDGLRA 158
>gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN]
gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans
PsJN]
Length = 161
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW++ ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G + E + K+ +DG +
Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ +++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEEL 159
>gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
gi|296160633|ref|ZP_06843448.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
gi|295889159|gb|EFG68962.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
Length = 161
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G + E + K+ DG +
Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ +++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEEL 159
>gi|317401992|gb|EFV82592.1| respiratory-chain NADH dehydrogenase I [Achromobacter xylosoxidans
C54]
Length = 164
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E
Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATDIIEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVG + VC PC LR E+ + + K+ +DG + E
Sbjct: 63 VATFYNMFDVKPVGKT-KIAVCTNLPCALRDGERAGDYLKRKLGVDYRETTADGQFTLVE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC ++P++++ +T E+L+ ++ A
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALKA 159
>gi|187477545|ref|YP_785569.1| NADH dehydrogenase subunit E [Bordetella avium 197N]
gi|115422131|emb|CAJ48655.1| NADH dehydrogenase I chain E [Bordetella avium 197N]
Length = 164
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ ++++P + QSA++ L AQE++GW+S IE VA + +A I V E
Sbjct: 3 LSAQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLSAEIIEDVAKYIGVAPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVG + VC PC LR EK E + K+ +DG + E
Sbjct: 63 VATFYNMFDVKPVG-VHKIAVCTNLPCALRDGEKAGEYLKRKLGVGYRETTADGKFTLIE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ ++L+ ++D +
Sbjct: 122 GECMGACGDAPVLIVNNKHMCVRMSEQKLDALVDGLKS 159
>gi|149927545|ref|ZP_01915799.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
gi|149823818|gb|EDM83044.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
Length = 159
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
SE + +++ +++YP + SAV+ L AQ + GW+ AIE VA L++ I
Sbjct: 1 MKLSENAYRLIDKELTKYPADQKISAVMAALRIAQVELGWLPSEAIEAVAEYLEIQPIAA 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ATFY + VG + VC PC L G E + K+ DG +
Sbjct: 61 YEVATFYNMYDTKKVGKS-KIVVCTNLPCALSGGTDAAEYLKKKLGIDYNETTKDGLFTL 119
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
+E EC GAC ++P++++ ++ E+++ +++ +
Sbjct: 120 KEGECMGACGDSPVMLVNNHRMCSFMSNEKIDALVEELKS 159
>gi|237809383|ref|YP_002893823.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
gi|237501644|gb|ACQ94237.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
Length = 166
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS + ++Q F+ S + + Y R +A I L Q++ GWV A
Sbjct: 1 MS----HQCQYQNEPFALSASELAAIQHEMHHYEDPR--AATIEALKLVQKERGWVPDGA 54
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A++L + V +ATFY+Q PVG R ++ C + C + G + + + K+
Sbjct: 55 IYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCFINGYQTIQQALEEKL 113
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+P +D + V C G C P +MI DT+ L+ + L+E+++ +
Sbjct: 114 GIRPGQTTADNRFTLLPVCCLGNCDKGPSMMIDDDTHSHLSVDNLDELLEQY 165
>gi|220931028|ref|YP_002507936.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
gi|219992338|gb|ACL68941.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
Length = 167
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ VNE+I ++ + QS +IP+L Q++ ++ + +A ++D++ V +ATF
Sbjct: 10 NFTRVNEIIEKH--GKDQSKLIPILQEVQKEYRYLPEEILTYIATVMDLSPATVYGVATF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
Y QF L P G + + VC T C + G ++ R K++ + D + E V C
Sbjct: 68 YAQFSLDPKG-KYVINVCDGTACHVSGSLPVLNAIRKKLNLEDGKFTTDDLMFTVETVSC 126
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+V I Y +TPE +E IID
Sbjct: 127 LGACGLAPVVTINGKVYGKMTPEAIEVIIDEL 158
>gi|302879337|ref|YP_003847901.1| NADH-quinone oxidoreductase, E subunit [Gallionella
capsiferriformans ES-2]
gi|302582126|gb|ADL56137.1| NADH-quinone oxidoreductase, E subunit [Gallionella
capsiferriformans ES-2]
Length = 159
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +N + +YP + QSAV+ L Q+++GW++ + +A L M + V E
Sbjct: 2 LSANIQEQINRELKKYPVDQKQSAVMSALRFVQDEKGWIATEDMADIAAFLGMPQMAVYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L P+G + VC C L G + +K+ +DG E
Sbjct: 62 VATFYHMYNLKPMGKT-TLTVCTNLSCTLCGSADTVAYLTSKLGIGFGEVTADGKYGMRE 120
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
EC GAC +AP++ I LTP ++++I+
Sbjct: 121 GECMGACKDAPLMTINNKKLCGRLTPAKIDQILAEL 156
>gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 610
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67
E +P S + E + EV + + + V+P+L Q+ G W+ A+++VA
Sbjct: 3 ELKKPVSAELTSEQVKRIREVCQQ--LGKVKGKVLPILHAVQDICGNWLPLEALQLVAKE 60
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L++ Y + + TFY+ + ++P G R +++C + PC + G E ++E + ++ +
Sbjct: 61 LEIPYGYLYGVLTFYSMYSVTPRG-RYIIRMCESAPCHVNGAENILEALKEELGVEVGGT 119
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
SDG + E C G C AP + I + + +LT +++EI+D + G+
Sbjct: 120 TSDGLFTLELTACLGTCEVAPAMQINEVVFGNLTGAKVKEILDNYRAGK 168
>gi|218961475|ref|YP_001741250.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
bidirectional hydrogenase), subunit gamma (hymA-like)
[Candidatus Cloacamonas acidaminovorans]
gi|167730132|emb|CAO81044.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
bidirectional hydrogenase), subunit gamma (hymA-like)
[Candidatus Cloacamonas acidaminovorans]
Length = 151
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E+ +Y + + +I +L Q+Q + ++S A++ VA LD+ + + TFYT
Sbjct: 2 IKEICQKY--APRKDNLIQILHEIQDQDPQHYISPEAVDTVAEYLDIPVNHIYGVLTFYT 59
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ P G + +++C + PC ++G + ++ + + DG + E C G
Sbjct: 60 MYSTKPRG-KNIIRLCESPPCYIKGSDNMLRKLKVLLGINIGETTKDGLFTLEFTSCLGV 118
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C NAP++MI D Y DLT E++EEII+ +
Sbjct: 119 CGNAPVMMINDDVYGDLTEEKVEEIIERIRGRR 151
>gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3]
gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315]
gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia
MC0-3]
gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia
J2315]
Length = 161
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEEL 159
>gi|150020390|ref|YP_001305744.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
gi|149792911|gb|ABR30359.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
Length = 157
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + V E++ ++ + + +I +L+ Q++ + + + ++ LD+ ++ +A
Sbjct: 2 ERTFSKVEEILEKH--NYEKKNLIKILLDVQKEYRHIPKEVVNYISVALDIPPAKIFGVA 59
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF L P G + +C T C + G L++ ++ KP D S ++V
Sbjct: 60 TFYAQFSLKPKGE-YTILICDGTACHMEGSMGLVKAIEEELGIKPGEVTQDLKFSLDKVG 118
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C GAC AP ++I + Y LTPE+ +EI+ G
Sbjct: 119 CLGACALAPAMVINGEVYGKLTPEKTKEILRKLKEGDD 156
>gi|306814604|ref|ZP_07448766.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
gi|305851998|gb|EFM52450.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
Length = 166
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELRAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|260598702|ref|YP_003211273.1| NADH dehydrogenase subunit E [Cronobacter turicensis z3032]
gi|260217879|emb|CBA32428.1| NADH-quinone oxidoreductase subunit E [Cronobacter turicensis
z3032]
Length = 166
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + + KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLTPEGIPELLEQYK 166
>gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
Length = 294
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY
Sbjct: 40 IADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFY 97
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEV 138
+ ++ +P G V VC T C + G +++++ ++ + ++ E +
Sbjct: 98 SMYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHI 156
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
EC AC AP+VM+ + +++ TP +++D+ G G
Sbjct: 157 ECNAACDYAPVVMVNWEFFDNQTPASARDLVDSLRAGTPAAPTRG 201
>gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E subunit [Deinococcus geothermalis
DSM 11300]
gi|94555301|gb|ABF45215.1| NADH dehydrogenase subunit E [Deinococcus geothermalis DSM 11300]
Length = 203
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 29 VISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ SRYP + +SA++PLL Q+ EG+VS + +A + V + +FY+ +
Sbjct: 14 IFSRYPATPQGRRSALMPLLREVQDAEGFVSEVRMAEIAELCGTTATEVRSVMSFYSTYH 73
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P G R H+QVC T C L G ++L + +++ P DG S ++VEC G+C
Sbjct: 74 TLPTG-RYHLQVCSTLMCALAGSDELWDYLVSELDVVPGEVTPDGRFSVQKVECLGSCGT 132
Query: 147 APMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTI 180
AP+V + + YE +T + + ++ A
Sbjct: 133 APVVQLNDEGYYERVTRTKCDRLLAALRADTPPPP 167
>gi|238023163|ref|ZP_04603589.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
gi|237865546|gb|EEP66686.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
Length = 157
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + +A + E
Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMSALRIAQVEKGYLAPETIEFVAKYIGIAPVAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ +DG + E
Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIDYGETTADGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ + + +E+ +
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMDADAIEKKLAEL 156
>gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
MEX-5]
gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6]
gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
MEX-5]
gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
MC40-6]
Length = 161
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCM---LRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L+PVG + + +C PC G E + + K+ DG +
Sbjct: 63 ATFYTMYELNPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEEL 159
>gi|225016112|ref|ZP_03705345.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
DSM 5476]
gi|224951109|gb|EEG32318.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
DSM 5476]
Length = 172
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
++ F +EE A + VI +Y A +P+L AQE G++ ++A
Sbjct: 2 KKRISSIPFKGTEEQAQRLQAVIEKYKDV--PGANMPVLQEAQEIYGYLPIEVQSMIAEG 59
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
L + + I TFY+QF LSP G + ++ VC T C ++G L++ ++ +P
Sbjct: 60 LGVPIETLYGITTFYSQFSLSPKG-KYNISVCMGTACYVKGSGALLDRITKRLGIQPEET 118
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
SDG S C GAC AP++ I + Y LT + ++ I+D +
Sbjct: 119 TSDGRFSLTACRCIGACGLAPVLTINDEVYGRLTVDDIDGILDKYMND 166
>gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium
MedDCM-OCT-S08-C1340]
Length = 165
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVL 76
FSE ++ + S++P + +SA+I L+ Q + G++S I +AN LD+ I V
Sbjct: 7 FSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDIQKIDVY 66
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW- 135
E+ATFY+ F L PVG + + VC CMLR + ++ ++ K D
Sbjct: 67 EVATFYSMFNLKPVG-KNTISVCTNVSCMLRNSDGIVNHIEKRLKIKIGESTKDNKFYLK 125
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+E+EC AC APM+ + YE+LT E++++I+D +
Sbjct: 126 DEMECLAACNGAPMMQVNHINYENLTFEKVDKILDEIADD 165
>gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330]
Length = 157
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +S ++ +++YP + +SAV+ L AQ ++G+++ IE VA + + I E
Sbjct: 2 LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ +DG + E
Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIGYGETTADGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ + + +E+ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDADAIEKKLAEL 156
>gi|313672281|ref|YP_004050392.1| NADH dehydrogenase subunit e [Calditerrivibrio nitroreducens DSM
19672]
gi|312939037|gb|ADR18229.1| NADH dehydrogenase subunit E [Calditerrivibrio nitroreducens DSM
19672]
Length = 164
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++E+ +Y + A IP+L + QE G++S+ IE + L+M+ + + TF
Sbjct: 12 DLSKIDEICEKY--KGKKGATIPVLQQVQEHYGYLSKEMIERIGENLNMSPHTLYGVLTF 69
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF +P G + ++VC T C ++G ++ EV + + D + EEV C
Sbjct: 70 YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVFEEFGIRNGETTPDIKFTLEEVSCI 128
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP++MI TY +LTPE+ I ++ Q
Sbjct: 129 GACGMAPVIMINDKTYGNLTPEQARSIFKEYAQKQ 163
>gi|157779398|gb|ABV71242.1| NADPH-dependent sulfur oxidoreductase A subunit [Thermococcus
litoralis DSM 5473]
Length = 154
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E I Y P+ S++IPLL + QE G++ R A+E ++ L + RV +ATFY QF+
Sbjct: 6 EYIYNYEPN--PSSLIPLLQKTQEIFGYLPREALEEISKYLKLPLSRVYGVATFYAQFRF 63
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P+G + +++C T C + G + + + ++ + DG ++ E V C G C A
Sbjct: 64 EPLG-KYVIKICHGTACHVNGAVNISQAIKEEVGVEEGQTTQDGLITLERVACLGCCSLA 122
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
P++MI + LTPE++ +II G+
Sbjct: 123 PVIMINDKVFGKLTPEKVRKIIKNLKEGK 151
>gi|311104662|ref|YP_003977515.1| NADH-quinone oxidoreductase subunit E [Achromobacter xylosoxidans
A8]
gi|310759351|gb|ADP14800.1| NADH-quinone oxidoreductase, E subunit [Achromobacter xylosoxidans
A8]
Length = 164
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E
Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATEIIEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVG + + VC PC LR E+ + + K+ DG + E
Sbjct: 63 VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGERAGDYLKRKLGVDYRGTTPDGQFTLVE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
EC GAC ++P++++ +T E+L+ ++ A
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALK 158
>gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
Length = 294
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY+
Sbjct: 41 ADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYS 98
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEVE 139
++ +P G V VC T C + G +++++ ++ + ++ E +E
Sbjct: 99 MYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIE 157
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AC AP+VM+ + +++ TP +++D+ G T G
Sbjct: 158 CNAACDYAPVVMVNWEFFDNQTPTSARDLVDSLRAGTPATPTRG 201
>gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
IOP40-10]
gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
IOP40-10]
Length = 161
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+
Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++L+PVG + + +C PC L G E + + K+ DG +
Sbjct: 63 ATFYTMYELNPVG-KHKITLCTNLPCQLGPDGGAEATADYLKQKLGIGFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEEL 159
>gi|157364372|ref|YP_001471139.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
gi|157314976|gb|ABV34075.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
Length = 162
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 38 CQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
+ +I +L R Q+ G ++ A E+VA L++ +V E+ TFYT F P G R +
Sbjct: 21 ERDILINILHRIQDHFGNYIPPEAAEIVAEELNVPPSKVYEVLTFYTMFSTKPRG-RYVI 79
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
+VC PC + G ++++ + ++ K DG + E C G C AP++MI
Sbjct: 80 RVCVNLPCHVTGGREIVKTIQEMLNVKFGETTEDGLFTLETTSCLGLCGVAPVIMINDQY 139
Query: 157 YEDLTPERLEEIIDAFSTG 175
Y DLT +++ EII++ G
Sbjct: 140 YGDLTVKKIREIIESLRQG 158
>gi|292492185|ref|YP_003527624.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
Nc4]
gi|291580780|gb|ADE15237.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
Nc4]
Length = 155
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+E + +YP + Q+A + L Q + GWVS + VA IL M+ +
Sbjct: 3 LSDEERKEIETEFKQYP--QKQAASVEALKIVQRRHGWVSDPHLREVAQILGMSAEELDG 60
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY PVG R + +C + C + G ++L + +N++ + DG +
Sbjct: 61 VATFYNLIFRRPVG-RHAILLCNSVSCWIMGYDRLYQHLQNRLGIGLGETSKDGRFTLLP 119
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
C G C +AP++M+ +D + DL PE+++EI+
Sbjct: 120 TCCLGDCNHAPVMMVDEDLHRDLAPEKVDEIL 151
>gi|115375220|ref|ZP_01462486.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
aurantiaca DW4/3-1]
gi|310818919|ref|YP_003951277.1| NADH dehydrogenase I subunit E [Stigmatella aurantiaca DW4/3-1]
gi|115367782|gb|EAU66751.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
aurantiaca DW4/3-1]
gi|309391991|gb|ADO69450.1| NADH dehydrogenase I, E subunit [Stigmatella aurantiaca DW4/3-1]
Length = 162
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 18 FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F+ E + E++S YPP R + ++P L Q+ +GW I +VA L++
Sbjct: 6 FTPEEQKKFDAGISEILSHYPPDRKSAGMLPALRLLQDLKGWCPPEGIRLVAKNLEVTPE 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
R E+A+FY + L + + VC C LRG EK++ NK+ K N T
Sbjct: 66 RAYEVASFYVMYHLK-KPGKYTIDVCTNLSCSLRGAEKMLAYLENKLGLKAGEANE--TF 122
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ E EC +C AP + + +D +E+LT R++E++
Sbjct: 123 TLRETECLASCGTAPCLQVNEDHHENLTKARVDELLAKL 161
>gi|294788077|ref|ZP_06753321.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
ATCC 29453]
gi|294484370|gb|EFG32053.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
ATCC 29453]
Length = 157
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + + I E
Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMGALRIAQVEKGYLAAETIEFVAQYVGIPAIAAYE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + L PVG + + VC PC LRG E + K+ DG + E
Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIGYGETTPDGKFTLVE 120
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
EC GAC +AP++++ + +++ +
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDAAAIDKKLAEL 156
>gi|323141627|ref|ZP_08076509.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
gi|322413892|gb|EFY04729.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
Length = 169
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ ++ +Y + +IP+L Q ++ + +E +A+ + + TF
Sbjct: 21 EKQRIDAILEKYADVK--GPLIPILQEVQNLYNYLPKDVLEYIADKTGTPISEIYGVVTF 78
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+ F L+P G R ++VC T C +RG + +++ N++ K H D + E V C
Sbjct: 79 YSLFHLNPRG-RNVIRVCQGTACHVRGGKTILQALENQLGIKAGHTTDDLRFTLETVACI 137
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GAC AP++ I DT+ LT ++L I+ +
Sbjct: 138 GACGLAPVMQINDDTHGRLTTDKLAGILARYK 169
>gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
ATCC 43553]
gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
ATCC 43553]
Length = 164
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E
Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY F + PVG + + VC PC LR ++ E + K+ +DG + E
Sbjct: 63 VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGDRAGEYLKRKLGVDYRQTTADGQFTLVE 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
EC GAC ++P++++ +T E+L+ ++ A
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTDEKLDALVAALK 158
>gi|253579945|ref|ZP_04857213.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
gi|251848944|gb|EES76906.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
Length = 160
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY
Sbjct: 7 YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPEELLTYVAEQIGVTEAKAFSVATFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F G + ++VC T C +R ++E K+ K D + E V C
Sbjct: 65 ENFSFDAKG-KYVIKVCDGTACHVRKSIPVLEELYKKLGLSKTKKTTDDMMFTVETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP +M+ ++ Y +TPE+ +E+ID G+
Sbjct: 124 GACGLAPTMMVNEEVYPRMTPEKADELIDKLRGGE 158
>gi|302389111|ref|YP_003824932.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermosediminibacter oceani DSM 16646]
gi|302199739|gb|ADL07309.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermosediminibacter oceani DSM 16646]
Length = 170
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V+E+I + R +I +L Q + ++ + + +A ++++ +V +ATFY
Sbjct: 12 QRVDEIIEAH--GRNPVNIISILQEVQNEYRYLPQDVLNYIATAMNISPSKVYGVATFYE 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQG 142
F L P G + +++C T C ++ L+ K+ K D + E V C G
Sbjct: 70 NFSLEPKG-KYVIRICDGTACHVKNSTALLNALTKKLGLKEGQRTTEDLLFTLETVSCLG 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AC AP++++ ++ + +TPE+ EEIID +
Sbjct: 129 ACGLAPVMVVNEEVHGKVTPEKAEEIIDEIINKE 162
>gi|160935013|ref|ZP_02082399.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
gi|156866466|gb|EDO59838.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
Length = 164
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 8/169 (4%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+R++ FS ++E + E+I ++ A++P+L AQ G++ ++
Sbjct: 3 KRIS-----NIPFSGTKEQEAQLFEIIEKH--KNEPGAIMPVLQEAQNVYGYLPIEVQQM 55
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA+ L + V +ATFY+QF L+P G + ++ VC T C ++G K++E ++ +
Sbjct: 56 VADGLGVPLSEVFGVATFYSQFSLTPKG-KYNISVCLGTACYVKGSGKILEELSKELGIE 114
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S C GAC AP++ I D Y L PE ++ I+ +
Sbjct: 115 AEECTEDGKFSLTACRCIGACGLAPVITINDDVYGRLVPEDVKGILAKY 163
>gi|153007186|ref|YP_001381511.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter sp.
Fw109-5]
gi|152030759|gb|ABS28527.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 188
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
EV+ RYPP R +A++P L QE G+++ A + A+ L + R E+ATFY F
Sbjct: 44 EVLRRYPPDRKAAAMLPALRIGQEIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMFNT 103
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P+G R V+VC C L G ++L E ++K + DG ++ EVEC GAC A
Sbjct: 104 RPIG-RHLVEVCTNVSCCLTGGDRLFEYLKHKYGVTNGGTSQDGRVTLREVECLGACGTA 162
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
P +++ ++ YE L P+++EEI+
Sbjct: 163 PAMLVDEEMYERLDPKKVEEILGRL 187
>gi|145589230|ref|YP_001155827.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047636|gb|ABP34263.1| NADH dehydrogenase subunit E [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 168
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
++ S+++ ++ I++YP QSAV+ L+ AQ + GWVS IE VA IL+M
Sbjct: 2 TTTLQLSDKTLADIHRNIAKYPAEHKQSAVMACLIAAQTEVGWVSPEVIEAVAQILEMPT 61
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
I V E+ATFY + P+G + + +C PC L E + + GT
Sbjct: 62 IAVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAATYLKETLGIGFNETTPCGT 120
Query: 133 LSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTG 175
+ +E EC GAC ++P++++ ++ E+++ ++ G
Sbjct: 121 FTLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAG 164
>gi|281417058|ref|ZP_06248078.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
JW20]
gi|281408460|gb|EFB38718.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
JW20]
Length = 165
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+NE+I +Y + A++P+L A+E G++ + +A L++ V + TFY
Sbjct: 16 EQKLNEIIEKY--KNTKGALVPVLHEAEEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
TQF L+P G + +QVC T C ++G ++E + K+ SDG S E C G
Sbjct: 74 TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AC AP++MI D Y L P+ +E II+ +
Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164
>gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acidaminophilum]
Length = 157
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F+EE+ +++VI+ Y A++P+L AQ+ G V+ + ++ L++ +
Sbjct: 6 FTEENFKKLDQVIAEY--KGKPGALMPVLHEAQKIFGCVALEVQKKISEGLNIPLAEIYG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY+QF L P G V VC T C ++G + +I+ + + ++DG +
Sbjct: 64 VATFYSQFSLEPKGD-YVVGVCLGTACYVKGSQSIIDRVCKDLDLEVGKTSADGKFTVVA 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++ I +D Y + + + I+ +
Sbjct: 123 TRCVGACGLAPVMTINEDVYGKIVADDVPGILAKY 157
>gi|82702145|ref|YP_411711.1| NADH-quinone oxidoreductase, E subunit [Nitrosospira multiformis
ATCC 25196]
gi|82410210|gb|ABB74319.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
Length = 168
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE+ + YP +R + I L Q+ GWVS I VA L M +
Sbjct: 2 LSEQERKEIEAHARHYPNNR--AVCIEALKIVQQHRGWVSNEGIADVAEALQMKPAELES 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY PVG + + +C + C + G E+L + +++ +P +DG +
Sbjct: 60 VATFYNMIFRKPVG-KHVILLCDSVSCWIMGYERLRQHLGDRLGIRPGQTTADGRFTLLP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C GAC +AP++M+ Y+DL P R+++I+ ++ +
Sbjct: 119 NVCLGACDHAPVMMVDDAHYQDLDPARIDQILASYQQEEEK 159
>gi|210616164|ref|ZP_03290967.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
gi|210149926|gb|EEA80935.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
Length = 184
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F ++E + +VI+ + A++P+L +AQE G++ +++N + +
Sbjct: 29 PFHGTKEQEEALLQVIAELKDDK--GALMPILQKAQEIYGYLPIEVQTMISNETKIPLEK 86
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ +ATFY+QF L+P G R + VC T C ++G + K+ DG S
Sbjct: 87 IYGVATFYSQFTLNPKG-RYRISVCLGTACYVKGSGDIYNYLMEKLGIVGGECTPDGKFS 145
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP++M+ D Y LT + +++I+ +
Sbjct: 146 LDACRCVGACGLAPVMMVNDDVYGRLTVDDIDDILAKY 183
>gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703 [Drosophila yakuba]
Length = 155
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A+
Sbjct: 33 VHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMH 92
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 93 KVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQLGI 151
Query: 123 KPL 125
Sbjct: 152 GVG 154
>gi|206901131|ref|YP_002250632.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
H-6-12]
gi|206740234|gb|ACI19292.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
H-6-12]
Length = 162
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
FSE + V ++ R+ ++ ++I +L QE+ G++ + A+E+V+ L + +
Sbjct: 6 KFSEYAQKEVERILDRFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F+L P G + +++C T C ++G L+ + K DG S +
Sbjct: 64 GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-MGLKEGKVTEDGYFSLD 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C GAC AP +MI ++ Y LTP++L+++I+ F
Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159
>gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197124713|ref|YP_002136664.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
gi|220919434|ref|YP_002494738.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85777127|gb|ABC83964.1| NADH dehydrogenase subunit E [Anaeromyxobacter dehalogenans 2CP-C]
gi|196174562|gb|ACG75535.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
gi|219957288|gb|ACL67672.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 171
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +++RYPP R +A+IP L QE G++S A + A L + R E+ATFY
Sbjct: 24 ELAGILNRYPPDRKAAAMIPALRLGQEIFGYLSPAVQRLAAERLGTSPARAEEVATFYVM 83
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F P R V+VC C L G E++ E + K+ DG ++ EVEC G+C
Sbjct: 84 FHTEP-PARHVVEVCTNVSCCLTGGERIFEHLKKKLELANGQSTRDGRITLREVECLGSC 142
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AP +++ ++ +E LT +++++I+
Sbjct: 143 GTAPAMLVDEEMHERLTIQKVDQIVGGLK 171
>gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
Length = 161
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ +++YP + QSAV+ L AQ + GW+S ++ VA+ L M I V E+
Sbjct: 3 SAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQEV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFYT ++ SPVG + + +C PC L G E E + K+ DG +
Sbjct: 63 ATFYTMYETSPVG-KFKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121
Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
+E EC G+C +AP++++ ++ E+++++++
Sbjct: 122 KEGECMGSCGDAPVMLVNNQRMCSFMSREKIDQLLEEL 159
>gi|319794664|ref|YP_004156304.1| NADH-quinone oxidoreductase, e subunit [Variovorax paradoxus EPS]
gi|315597127|gb|ADU38193.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus EPS]
Length = 180
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ + P++ E +++YP + QSAV+ L Q+ EG++S
Sbjct: 1 MTTSSTHHHDAAPAA-PLKAEILERFAREVAKYPEAGKQSAVMACLAIVQQDEGYISMQR 59
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+A+ L MA I V E+ TFY + PVG + + VC PC LR + K+
Sbjct: 60 EREIADYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKL 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
K DG + ++ EC GAC ++P++++ T ++ E+L+++I+
Sbjct: 119 GIKMGETTGDGLFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIEGLRA 173
>gi|238763929|ref|ZP_04624886.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
33638]
gi|238697897|gb|EEP90657.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
33638]
Length = 187
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F S E + Y +R +A I L Q+Q GWV AI +A +L +
Sbjct: 31 EAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPAS 88
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRF 147
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|51892728|ref|YP_075419.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
14863]
gi|51856417|dbj|BAD40575.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
14863]
Length = 274
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80
V ++ RYP R +SA++PLL A + +++++ IE VA I +A V + +
Sbjct: 15 KDEVEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCS 74
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV- 138
FYT F+ PVG + + VCG C L G +L+E + K DG ++ E
Sbjct: 75 FYTMFRRQPVG-KYLITVCGNMACHLLAGGSQLVEHMEKTLGIKVGETTPDGLITLEVTG 133
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
EC AC AP++ + + +T E+ + ++ A G+G
Sbjct: 134 ECLAACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEGP 173
>gi|239627942|ref|ZP_04670973.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47_FAA]
gi|239518088|gb|EEQ57954.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47FAA]
Length = 164
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ ++ Q F+ + E + VI++ A++P++ +AQ+ G++
Sbjct: 1 MACKK------QTVPFAGTPEQEAELKSVIAQLKD--QPGALMPVMQKAQDIYGYLPIEV 52
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++++ + + +V ++TFY QF L P G + V VC T C ++G ++ +
Sbjct: 53 QTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKVSVCLGTACYVKGSGEIFSKLEELL 111
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+DG S + C GAC AP++MI + Y LT + + I+ +
Sbjct: 112 GITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKY 163
>gi|239816479|ref|YP_002945389.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
gi|239803056|gb|ACS20123.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
Length = 182
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 4/174 (2%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
S + +++YP + QSAV+ L Q+ EG++S
Sbjct: 5 STHHDTAPSAPSAPLK--PAILERFAREVAKYPEAGKQSAVMACLAIVQQDEGFISMQRE 62
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+A L MA I V E+ TFY + PVG + + VC PC LR + K+
Sbjct: 63 REIAEYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKLG 121
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
K +DG + ++ EC GAC ++P++++ T ++ E+L+++ID
Sbjct: 122 IKMGETTADGMFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIDGLRA 175
>gi|303238582|ref|ZP_07325116.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
cellulolyticus CD2]
gi|302593980|gb|EFL63694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
cellulolyticus CD2]
Length = 181
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ +P F +E + I + A+I +L +AQE G++ R VA L
Sbjct: 8 DVMKPVEREFPKEKYDELGAFIDN--METTRGALIEILHKAQEIFGYLPRDVQLYVARKL 65
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V + +FY+ F P + + VC T C +RG +K++E ++++ +
Sbjct: 66 GIPGAEVYGVVSFYSYFTTKP-SGKHTISVCMGTACFVRGSDKILEKFKDRLGIESNETT 124
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
D + ++V C GAC AP+VM+ Y + E ++ II+ + + I
Sbjct: 125 EDSLFTIKDVRCIGACGLAPVVMVDGKVYGRVKEEDVDNIINEYRGKETKNI 176
>gi|297565710|ref|YP_003684682.1| NADH-quinone oxidoreductase subunit E [Meiothermus silvanus DSM
9946]
gi|296850159|gb|ADH63174.1| NADH-quinone oxidoreductase, E subunit [Meiothermus silvanus DSM
9946]
Length = 183
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ W+ EV S+YP ++A++PLL R Q+ EGW+S E +A+I+ V
Sbjct: 3 FFDDKQEWLAEVFSQYPE--RRAALMPLLRRVQQDEGWISPERQEEIAHIVGTTATEVAG 60
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FYT FQ P G + H+QVC T C + G ++L + + P +DG S ++
Sbjct: 61 VMSFYTYFQSLPTG-KHHIQVCATLSCAIGGADELWDELVQTLGILPGEVTADGLFSIQK 119
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQ 176
VEC G+C AP+V I + E +T RL+ ++ G+
Sbjct: 120 VECLGSCHTAPVVQINDEPYVECVTKARLQALLQGLREGK 159
>gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila
UNI-1]
gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1]
Length = 173
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 9/161 (5%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V +++++YP +SAV+PLL AQ +EG+V R A+E +A IL+M+ V I FYT
Sbjct: 10 EEVKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVASIVGFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ P R H+QVC PC LRG +K +E ++ + DG + E V+C A
Sbjct: 70 LYYDQP-AGRYHIQVCTDLPCALRGADKFLEELCQRLGIREGETTPDGLFTVEAVKCLAA 128
Query: 144 CVNAPMVMIGKD----TYEDLTPE----RLEEIIDAFSTGQ 176
C AP+ + D +E+ T E +E++ + +
Sbjct: 129 CHRAPVFQVQGDGEIEYHENQTVELTLAWMEQVREKVRAEK 169
>gi|195400739|ref|XP_002058973.1| GJ15322 [Drosophila virilis]
gi|194141625|gb|EDW58042.1| GJ15322 [Drosophila virilis]
Length = 129
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + H+QVC TTPC LRG +++++ C+ ++ D + EVEC GAC
Sbjct: 1 MFMRKPTGKYHIQVCTTTPCWLRGSDEILDTCKKQLGIGVGETTKDNKFTISEVECLGAC 60
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
VNAPMV I D YEDLT ++ I+ + PGP+ R +S P G TSL +
Sbjct: 61 VNAPMVSINDDYYEDLTSADMQSILGDLKADKISP--PGPRNGRFASEPKGNPTSLSE-E 117
Query: 205 SKKRGKKKKDD 215
K G +
Sbjct: 118 PKGPGFGLQAG 128
>gi|123441679|ref|YP_001005663.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088640|emb|CAL11435.1| NADH dehydrogenase I chain E [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 172
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F S E + Y +R +A I L Q+Q GWV AI +A +L +
Sbjct: 16 EVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPAS 73
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 74 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRF 132
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 133 TLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 171
>gi|225572037|ref|ZP_03780901.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
10507]
gi|225040472|gb|EEG50718.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
10507]
Length = 164
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
+ +FS +EE + +VI + A++P+L +AQ+ G++ + ++++++
Sbjct: 2 PNKKTTVAFSGTEEQEEALRKVIEEMKE--EKGALMPILQKAQDIYGYLPKEVMKIISDE 59
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
+ ++ +ATFY+QF L+P G + + VC T C ++G + K+
Sbjct: 60 TQIPMEKIYGVATFYSQFTLNPKG-KYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGEC 118
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++MI + Y LT + +++I+ +
Sbjct: 119 TPDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163
>gi|253689145|ref|YP_003018335.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755723|gb|ACT13799.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 171
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M ++E ++ F S+ + Y +R +A I L Q++ GWV
Sbjct: 1 MPDHNISERNISDNNVFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + K
Sbjct: 59 AINAIADVLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERK 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ KP DG + C G C P +MI DT+ +TPE +E +++ +
Sbjct: 118 LSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQYQ 171
>gi|288572801|ref|ZP_06391158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568542|gb|EFC90099.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 163
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E ++ ++ RY + IPLL Q++ G+V+ A+ V+ +D++ + +
Sbjct: 9 SNELTQRLDPIVQRY--QGKKGITIPLLADIQKEYGYVAEEAVTYVSRKMDISASEMFGV 66
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY F+L P G + +++C T C ++G + E + + DG + + V
Sbjct: 67 ATFYAMFRLQPEG-KYVIRICRGTACHVQGSASVAEEVARHLGIEEGETTEDGIFTLQHV 125
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C AP++M+G + + LTP + EI++ +
Sbjct: 126 ACLGCCSLAPVMMVGDNVHGLLTPPKSIEILEDYRK 161
>gi|82777693|ref|YP_404042.1| NADH dehydrogenase subunit E [Shigella dysenteriae Sd197]
gi|309785011|ref|ZP_07679644.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
gi|81241841|gb|ABB62551.1| NADH dehydrogenase I chain E [Shigella dysenteriae Sd197]
gi|308927381|gb|EFP72855.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
Length = 166
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
E QP +F S + + Y R +A I L Q+Q GWV AI +A
Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C +MI +DT+ LTPE + E+++ +
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGLNMMIDEDTHAHLTPEAIPELLERYK 166
>gi|238794604|ref|ZP_04638211.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
29909]
gi|238726090|gb|EEQ17637.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
29909]
Length = 187
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE F S E + Y +R +A I L Q+Q GWV AI +A
Sbjct: 24 AEPATTTEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 81
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P
Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|154249674|ref|YP_001410499.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
Rt17-B1]
gi|154153610|gb|ABS60842.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
Rt17-B1]
Length = 161
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+NE+ + + ++ LL R Q+ Q ++ E++A L++ +V E+ TFYT
Sbjct: 10 INEI--KEESLEERDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYT 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + ++VC + PC + G ++++ + K+ DG + EE C G
Sbjct: 68 MFSTKPRG-KYIIRVCTSLPCHVPGGREIVQFLKQKLGVDFGETTKDGLFTLEETGCLGL 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C +P++M+ Y DLT E++ EII+ G+G
Sbjct: 127 CGVSPVIMVNDQYYGDLTVEKVNEIIENLKGGEGK 161
>gi|329914960|ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
IMCC9480]
gi|327545010|gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
IMCC9480]
Length = 159
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE + ++ +S++P + QSAV+ L AQ++ GW+S ++ +A+ L MA I V E
Sbjct: 3 LSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A FY + SP G + + VC PC L G EK + K+ +DG + E
Sbjct: 63 VAAFYEMYNTSPTG-KFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTLRE 121
Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
EC GAC +AP++++ ++ ++++++++
Sbjct: 122 GECMGACGDAPVMLVNNKRMCSWMSNDKIDDLVEELKK 159
>gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
mobilis Nb-231]
gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
mobilis Nb-231]
Length = 167
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76
S E ++ ++++P +SAVIP L AQE GW+SR +E VA L++ + V
Sbjct: 11 LSAEQRSEIDHWLAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPPVAVY 70
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+ TFY+ F L P G R V +C C+LRG E+++E NK+ +DG ++ +
Sbjct: 71 EVGTFYSMFDLKPTG-RHKVNICTNISCLLRGAERIVEHVENKLGISVGETTADGRITLK 129
Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E EC AC APM+++ ++ + DLTPE+++EI+D
Sbjct: 130 GEEECLAACAAAPMMLVDEEYHVDLTPEKVDEILDKL 166
>gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
SK121]
gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
SK121]
Length = 274
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 24 IWVNEVISRYPPSR-----CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
VI+RY +SA++PLL Q ++G+++ A I+ + L + V +
Sbjct: 43 ADAETVIARYREPDAAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAV 102
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDG 131
+TFY+ ++ P G V VC T C + G + ++ + SDG
Sbjct: 103 STFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALEEHLGSAGSRDEGGHSISTSDG 161
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRI 189
++ E +EC AC AP++MI + +++ TPE ++DA G+ T G R
Sbjct: 162 KITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGERVTPSRGATLCSFRQ 221
Query: 190 SSAPAGG 196
++ G
Sbjct: 222 TARTLAG 228
>gi|238788651|ref|ZP_04632443.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
33641]
gi|238723246|gb|EEQ14894.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
33641]
Length = 187
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE F S E + Y +R +A I L Q++ GWV AI +A+
Sbjct: 24 AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIAD 81
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P
Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSHLKPEDIEKLLEQY 186
>gi|242399494|ref|YP_002994919.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
MM 739]
gi|242265888|gb|ACS90570.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
MM 739]
Length = 154
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E I Y P+ S++IPLL + QE G++ + A+E ++ L + RV +ATFY QF+
Sbjct: 6 EYIYHYEPN--PSSLIPLLQKTQETFGYLPKEALEEISRYLKVPLSRVYGVATFYAQFRF 63
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P+G + +++C T C + G + + R ++ + DG ++ E V C G C A
Sbjct: 64 EPLG-KYVIKICHGTACHVNGAVNISQAIREEVGIEEGQTTVDGLITLERVACLGCCSLA 122
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
P++MI + Y LTP+++ +II G+
Sbjct: 123 PVIMINEKVYGKLTPDKVRKIIRNLKEGK 151
>gi|330810466|ref|YP_004354928.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378574|gb|AEA69924.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 165
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV A+ + IL +
Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P+ + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 164
>gi|167750761|ref|ZP_02422888.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
gi|167656196|gb|EDS00326.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
gi|291557754|emb|CBL34871.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
V10Sc8a]
Length = 166
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
++E+ F+ + E + E+I + Q A++P+L +AQE G++ ++A
Sbjct: 3 SKEKN-TVPFNGTPEQEKALREMIGNH--KGQQGALMPVLQQAQEIYGYLPIEVQSIIAE 59
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+ + +V ++TFY+QF L P G + + VC T C ++G + K+
Sbjct: 60 EMGIPLEKVYGVSTFYSQFSLYPKG-KYKISVCLGTACYVKGSGDIFAKLSEKLGISDGK 118
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++ + D Y LT + ++ I+ +
Sbjct: 119 CTQDGIFSLDACRCIGACGLAPVMTVNDDVYGKLTVDEIDGILAKY 164
>gi|332162386|ref|YP_004298963.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606465|emb|CBY27963.1| NADH-ubiquinone oxidoreductase chain E [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325666616|gb|ADZ43260.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860333|emb|CBX70646.1| NADH-quinone oxidoreductase subunit E [Yersinia enterocolitica
W22703]
Length = 187
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F S E + Y +R +A I L Q+Q GWV AI +A +L +
Sbjct: 31 EVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPAS 88
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRF 147
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|268607921|ref|ZP_06141652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ruminococcus
flavefaciens FD-1]
Length = 164
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + E + +VI + A++P+L +AQE G++ ++++ + +
Sbjct: 9 PFKGTPEQEKELLKVIEE--KKSDKGALMPILQKAQEIYGYLPIEVQAIISDNTGIPLEK 66
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + TFY QF L P G + VC T C ++G + + K+ DG S
Sbjct: 67 IYGVVTFYAQFSLYPKGE-YTISVCLGTACYVKGSGDIYNKLQEKLGIGGGECTPDGKFS 125
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC AP++ + +D Y LT + +++II ++
Sbjct: 126 LDACRCIGACGLAPVLTVNEDVYGRLTVDDVDKIIAKYA 164
>gi|160936131|ref|ZP_02083504.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
BAA-613]
gi|158440941|gb|EDP18665.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
BAA-613]
Length = 164
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 9/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ ++ Q F + E + I+ A++P++ +AQE G++
Sbjct: 1 MACKK------QTVPFKGTPEQEAALKSAIAE--LGDQPGALMPVMQKAQEIYGYLPIEV 52
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++++ + + +V ++TFY QF L P G + + VC T C ++G ++ +
Sbjct: 53 QTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFRKLEELL 111
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+DG S + C GAC AP++MI + Y LT + + I+ +
Sbjct: 112 GITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKY 163
>gi|225569034|ref|ZP_03778059.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
15053]
gi|225161833|gb|EEG74452.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
15053]
Length = 164
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F+ +EE + VI+ + A++P+L RAQ+ G++ ++++N + ++
Sbjct: 10 FTGTEEQEKELLGVINELKD--EKGALMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ TFY+QF LSP G R + VC T C ++G + K+ DG S
Sbjct: 68 YGVTTFYSQFNLSPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP++MI + Y LT + +++I+ +
Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163
>gi|227204477|dbj|BAH57090.1| AT4G02580 [Arabidopsis thaliana]
Length = 163
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 14/155 (9%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + +
Sbjct: 1 MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 59
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++
Sbjct: 60 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 119
Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
+G+ G Q RI P GG +LL
Sbjct: 120 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 152
>gi|167761223|ref|ZP_02433350.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
gi|167660889|gb|EDS05019.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
Length = 164
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F+ ++E + EVI + + +++P+L RAQ+ G++ ++++N + ++
Sbjct: 10 FNGTKEQEKELLEVI--HELKDEKGSLMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ TFY+QF L+P G R + VC T C ++G + K+ DG S
Sbjct: 68 YGVVTFYSQFNLNPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP++M+ + Y LT + +++I+ +
Sbjct: 127 DACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163
>gi|153814129|ref|ZP_01966797.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
gi|317499934|ref|ZP_07958170.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087843|ref|ZP_08336768.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848525|gb|EDK25443.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
gi|316898651|gb|EFV20686.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409538|gb|EGG88979.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 164
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E+ FS ++E + +VI + + A++P+L +AQ+ G++ +++++
Sbjct: 3 EKKATVPFSGTKEQEEALMKVI--HELKDEKGALMPILQKAQDIYGYLPIEVQKMISDET 60
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ ++ +ATFY+QF LSP G + + VC T C ++G + K+
Sbjct: 61 GIPMEKIYGVATFYSQFTLSPKG-KYRISVCLGTACYVKGSGDIYNALMEKLGIVGGECT 119
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++MI + Y LT + L++I+ +
Sbjct: 120 PDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDLDDILAKY 163
>gi|254445571|ref|ZP_05059047.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Verrucomicrobiae bacterium DG1235]
gi|198259879|gb|EDY84187.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Verrucomicrobiae bacterium DG1235]
Length = 160
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
E+ + I +YP QSAV+PLL Q+ +G ++ A E VA L +A I V
Sbjct: 1 MDLKPETLAEIEAAIPKYPE--KQSAVMPLLHAIQKDQGTLTNEAAEWVAEKLGIAPINV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
L + +FY F+ +G R ++VC T C + G K+ + + + + DG ++
Sbjct: 59 LSVISFYPFFRQHQIGKRH-IRVCRTLSCAMAGGAKVCDRMLKEFETELNGVSPDGEVTV 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
E EC +C +AP++++ ++ +E+L + +EI D
Sbjct: 118 EFAECLASCGSAPVMLVDEELHENLDEAKAKEICDKIKA 156
>gi|238759965|ref|ZP_04621118.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
gi|238701792|gb|EEP94356.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
Length = 187
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F S E + Y +R +A I L Q+Q GWV AI +A +L +
Sbjct: 31 EVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPAS 88
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRF 147
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|242239965|ref|YP_002988146.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
gi|242132022|gb|ACS86324.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
Length = 176
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
+ + QP +F S+ + Y +R +A I L Q+Q GWV AI +A
Sbjct: 12 DAQGQPAGEAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAITAIA 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 70 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPG 128
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +M+ +DTY L P+ L+ +++ +
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPSMMVDEDTYTRLKPDDLDSLLEQYQ 176
>gi|223937080|ref|ZP_03628988.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
gi|223894361|gb|EEF60814.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
Length = 178
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 19/185 (10%)
Query: 1 MSVRRLAEEEFQ--------PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
MS A + Q +F +NE+++ YP +SA + L QE
Sbjct: 1 MS----APDSTQQNRASVLSTGNFVVPPALEAELNELVTHYPV--KRSASLMFLHAIQEH 54
Query: 53 EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL 112
G+VS+ AIE +A L++ I V E+ TFY F + ++VC T C L G KL
Sbjct: 55 FGYVSKEAIEWIAKKLELQPINVYELVTFYPMF-RQEPAGKHQIKVCRTLSCALGGSHKL 113
Query: 113 IEVCRNKIHQKPL----HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
+ K+ DG S E VEC +C AP++M +D YE +T ++ +EI
Sbjct: 114 HKYFCEKLGLDSHAHGVQTTKDGKYSVEFVECLASCGTAPVMMCNEDFYEGVTNQKADEI 173
Query: 169 IDAFS 173
+
Sbjct: 174 LGKCK 178
>gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
Length = 274
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 24 IWVNEVISRYPPSRC-----QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
VI+RY +SA++PLL Q ++G+++ A I+ + L + V +
Sbjct: 43 ADAETVIARYREPDSAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAV 102
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDG 131
+TFY+ ++ P G V VC T C + G + ++ + SDG
Sbjct: 103 STFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALEEHLGSTGSRDEGGHSISTSDG 161
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRI 189
++ E +EC AC AP++MI + +++ TPE ++DA G+ T G R
Sbjct: 162 KITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGERVTPDRGATLCSFRQ 221
Query: 190 SSAPAGG 196
++ G
Sbjct: 222 TARTLAG 228
>gi|325262529|ref|ZP_08129266.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
gi|324032361|gb|EGB93639.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
Length = 164
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
+ Q FS ++E + +VI+ + A++P+L +AQ+ G++ +++N
Sbjct: 4 KKQTVPFSGTKEQEESLLKVITELKD--EKGALMPILQKAQDIYGYLPIEVQTIISNETG 61
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
+ ++ + TFY+QF LSP G + + VC T C ++G + K+
Sbjct: 62 IPLEKIYGVVTFYSQFTLSPKG-KYQISVCLGTACYVKGSGDIYNALMEKLGIVGGECTP 120
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++M+ + Y LT + +++I+ +
Sbjct: 121 DGKYSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163
>gi|291296252|ref|YP_003507650.1| NADH-quinone oxidoreductase E subunit [Meiothermus ruber DSM 1279]
gi|290471211|gb|ADD28630.1| NADH-quinone oxidoreductase, E subunit [Meiothermus ruber DSM 1279]
Length = 188
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F ++ W+NEV ++YP ++A++P+L R Q+ EGW+S E +A IL + V
Sbjct: 8 FFDDKQDWLNEVFAQYPD--RRAALMPMLRRVQQDEGWISPERQEEIARILGITATEVAG 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY+ +Q P G + H+QVC T C + G ++L + + DG S ++
Sbjct: 66 VMSFYSYYQALPTG-KYHLQVCATLSCAIGGADELWDELVETLGILRGEVTPDGLFSIQK 124
Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQG 177
VEC G+C AP++ + + E +T RL ++ G+
Sbjct: 125 VECLGSCHTAPVIQVNDEPYVECVTKARLHALLQGLREGKK 165
>gi|332981825|ref|YP_004463266.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Mahella australiensis 50-1 BON]
gi|332699503|gb|AEE96444.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Mahella australiensis 50-1 BON]
Length = 162
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + VI RY + ++P++ +AQE G++ +A LD+ V +A
Sbjct: 10 EEKFQELKTVIDRY--KNMEGPLMPIMHKAQEIFGYLPLEVQNFIAEELDIPLTDVYGVA 67
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F L P G + + +C T C ++G +K+++ + ++ DG + +
Sbjct: 68 TFYSHFTLQPQG-KYTINICLGTACYVKGAQKVLDKLKEELKINEGETTPDGKFTIDATR 126
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C GAC AP++MI + Y L P+ + +I+ +
Sbjct: 127 CLGACGLAPVMMINGEVYGRLVPDDVPKILKRYMND 162
>gi|319779202|ref|YP_004130115.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
MCE9]
gi|317109226|gb|ADU91972.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
MCE9]
Length = 219
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ++ ++ + +YP + QSAV+ L AQ + WVS ++ +A L+M + V E
Sbjct: 3 LSNKAYELIDAELKKYPEDQRQSAVMSALRIAQTELNWVSPEVVQDIATYLNMPVMAVQE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY ++L PVG + + VC PC LR + I + K+ + DG ++ +
Sbjct: 63 VATFYNMYELQPVG-KYKITVCTNLPCALREGVQTINYLQEKLGIGIDETSQDGLITIKS 121
Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTI 180
EC GAC ++P+++I + R++E+ID +G
Sbjct: 122 GECMGACGDSPVLLINNHHMCVRMDKARIDELIDDIYKEEGVEP 165
>gi|330958156|gb|EGH58416.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 165
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDMLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164
>gi|258651220|ref|YP_003200376.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
multipartita DSM 44233]
gi|258554445|gb|ACV77387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
multipartita DSM 44233]
Length = 249
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 9/189 (4%)
Query: 1 MS--VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58
MS RR+ F + F E + E+I+RYP SR SA++PLL Q EG VS+
Sbjct: 1 MSETNRRIGVPVFLDTGVVFDELTHGRAAEIIARYPMSR--SALLPLLHLVQSVEGCVSQ 58
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
IE A L + V +ATFYT ++ +P G V VC C G + +
Sbjct: 59 QGIEFCAGQLGLTEAEVSAVATFYTMYKRTPCGE-HLVSVCTNALCAALGGDAIYATLSR 117
Query: 119 KIHQKP----LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
++ + G+++ E EC AC +AP++ + + +++ TP+ +++ +
Sbjct: 118 RLGVGHEQTAGEPGTPGSITLEHAECLAACDHAPVLTVNYEYFDNQTPDSALDLLTGLQS 177
Query: 175 GQGDTIRPG 183
G+ G
Sbjct: 178 GERPHPTRG 186
>gi|238798407|ref|ZP_04641888.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
43969]
gi|238717721|gb|EEQ09556.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
43969]
Length = 187
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
F S E + Y +R +A I L Q+Q GWV AI +A++L +
Sbjct: 30 TDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIPA 87
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 88 SDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGR 146
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 147 FTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|300717648|ref|YP_003742451.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
gi|299063484|emb|CAX60604.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
Length = 171
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +R+A E + ++ F S + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQRIAIETIEDNNAFVLSTLERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + +
Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEDN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIVNLLEQYQ 171
>gi|225405645|ref|ZP_03760834.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
DSM 15981]
gi|225042839|gb|EEG53085.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
DSM 15981]
Length = 164
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ ++ Q F+ + E + VI+ +++P++ +AQ+ G++
Sbjct: 1 MACKK------QTVPFAGTPEQEAQLKAVIAELKD--QPGSLMPVMQKAQDIYGYLPIEV 52
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++++ + + +V ++TFY QF L P G + + VC T C ++G ++ +
Sbjct: 53 QTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFSKLEELL 111
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+DG S + C GAC AP++MI + Y LT + + I+ +
Sbjct: 112 GITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDVPGILAKY 163
>gi|121534129|ref|ZP_01665954.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
Nor1]
gi|121307232|gb|EAX48149.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
Nor1]
Length = 166
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++E++++Y + A+IP+L AQ G++S+ IE +A LD+ ++ + TFY
Sbjct: 19 LAQLDEILAKY--QGVKGALIPVLQEAQNAYGYLSKEVIEYIAEKLDIPVSQIYGVVTFY 76
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF L+P G R ++VC T C +RG + +++ + + +D + E V C G
Sbjct: 77 AQFHLNPRG-RNIIRVCQGTACHVRGAKAILKALEDNLKITAGGTTADLKFTLETVACIG 135
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP++MI DT+ LTPE + I+ +
Sbjct: 136 ACGLAPVMMINDDTHGRLTPEVIPSILAKY 165
>gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, subunit E [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213970032|ref|ZP_03398164.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
T1]
gi|301381387|ref|ZP_07229805.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato
Max13]
gi|302062158|ref|ZP_07253699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato K40]
gi|302130468|ref|ZP_07256458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925136|gb|EEB58699.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
T1]
gi|330875770|gb|EGH09919.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330965588|gb|EGH65848.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|331017274|gb|EGH97330.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 165
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFVLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ + + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPATVAKMLEGY 164
>gi|330503268|ref|YP_004380137.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
gi|328917554|gb|AEB58385.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
Length = 164
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q+Q GWV A + + IL +
Sbjct: 5 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAADAIGEILGI 62
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ + ++ SD
Sbjct: 63 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVVSEMQKQLGIGLGQTTSD 121
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ V C G C AP +MI DT+ D+ P+ + ++++ +
Sbjct: 122 ERFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEDYK 164
>gi|238753751|ref|ZP_04615112.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
gi|238707987|gb|EEQ00344.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
Length = 187
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
++F S E + Y +R +A I L Q++ GWV AI +A++L +
Sbjct: 31 AAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 88
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAAISKKLSIQPGQTTFDGRF 147
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ DL PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSDLKPEEIEQLLEQY 186
>gi|118579071|ref|YP_900321.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
2379]
gi|118580050|ref|YP_901300.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
2379]
gi|118581590|ref|YP_902840.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
2379]
gi|118501781|gb|ABK98263.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
2379]
gi|118502760|gb|ABK99242.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
2379]
gi|118504300|gb|ABL00783.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
Length = 154
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++ + YP S V+P L +++ + + +AN L + ++V E T+Y
Sbjct: 5 EEKFAQLRATYPKELNSSLVMPFLRIMLDEKKSLGESDAVFIANYLGLPAMQVKEALTWY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F PVGT ++VC C L G E++I+ K+ KP +DG + VEC
Sbjct: 65 TMFYRHPVGT-HVIKVCRNIACSLMGAERIIDHLSQKLGIKPGETTADGRFTLLLVECLA 123
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+C AP++ I +E LT ++++I+
Sbjct: 124 SCGTAPVMQIDDTYHEQLTEAKIDQILKGL 153
>gi|85059576|ref|YP_455278.1| NADH dehydrogenase subunit E [Sodalis glossinidius str.
'morsitans']
gi|84780096|dbj|BAE74873.1| NADH dehydrogenase I subunit E [Sodalis glossinidius str.
'morsitans']
Length = 177
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 3/161 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
+F S E + Y +R +A I L Q+ GWV AI +A +L +
Sbjct: 20 TETFELSREEREAIKHEKHHYEDAR--AASIEALKIVQKNRGWVPDGAIAAIAQVLGIPG 77
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V +ATFY+Q PVG R ++ C + C + G + + ++ KP DG
Sbjct: 78 SDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQSLNIKPGQTTPDGR 136
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C P +M+ DT+ LTPE + +++ +
Sbjct: 137 FTLLPTCCLGNCDKGPTMMVDDDTHLHLTPEGIGPLLEQYR 177
>gi|154498759|ref|ZP_02037137.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
29799]
gi|150272149|gb|EDM99353.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
29799]
Length = 164
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ E + +VI+ + + +P+L AQE G++ ++A LD+ V +
Sbjct: 13 TPEQEERLRQVIAEH--KGQPGSTMPVLQAAQEIFGYLPEEVQIMIAEGLDIPLSEVYGV 70
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
A+FY QF ++P G R + VC T C ++G ++ K+ +P DG S +
Sbjct: 71 ASFYAQFSMNPKG-RYQISVCLGTACYVKGAADILAAVEKKLGIRPGSITPDGKFSLDAC 129
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++M+G D Y LTP+++ I+D +
Sbjct: 130 RCVGACGLAPVMMVGSDVYGRLTPDQVGPILDKY 163
>gi|217967305|ref|YP_002352811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
turgidum DSM 6724]
gi|217336404|gb|ACK42197.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
turgidum DSM 6724]
Length = 162
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
FS+ + + +++ ++ ++ ++I +L QE+ G++ + A+E+V+ L + +
Sbjct: 6 KFSDYAQRELEKILDQFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F+L P G + +++C T C ++G L+ I K DG S +
Sbjct: 64 GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-IGLKEGKVTEDGYFSLD 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C GAC AP +MI ++ Y LTP++L+++I+ F
Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159
>gi|229591256|ref|YP_002873375.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens SBW25]
gi|312961689|ref|ZP_07776187.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
gi|229363122|emb|CAY50141.1| NADH dehydrogenase I chain E [Pseudomonas fluorescens SBW25]
gi|311283948|gb|EFQ62531.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
Length = 165
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV A+ + IL +
Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNKLGIGLGQTTPD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTQLLEGY 164
>gi|169247657|gb|ACA51657.1| HydC [Thermoanaerobacterium saccharolyticum]
Length = 160
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
FSEE+ + +VI + + ++I ++ AQE G++ + ++ +++ +
Sbjct: 7 KFSEENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + VC T C ++G +++ + K+ DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ +E+I+ F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159
>gi|258593431|emb|CBE69770.1| NADH-quinone oxidoreductase subunit E 2 (NADH dehydrogenase I
subunit E 2) (NDH-1 subunit E 2) [NC10 bacterium 'Dutch
sediment']
Length = 171
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + ++SRYP +SA++PL+ QE+ G+++ A+ +A LD+ I+V E+A F
Sbjct: 2 TEETIQRILSRYPE--RRSALLPLMHLCQEEGGYLTADAMRELAARLDLPPIQVAEVAMF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+L P G + + VC C L G E++I + DG + + VEC
Sbjct: 60 YDMFRLKP-GGQREIWVCHNLSCALLGAEQVIRRLEEVLGVSAGETTPDGLFTIKRVECL 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AC AP + +G D Y ++ +E ++
Sbjct: 119 AACGRAPAIQVGSDYYGPVSHGEVETLVARLRK 151
>gi|157371542|ref|YP_001479531.1| NADH dehydrogenase subunit E [Serratia proteamaculans 568]
gi|157323306|gb|ABV42403.1| NADH-quinone oxidoreductase, E subunit [Serratia proteamaculans
568]
Length = 183
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F S E + Y R +A I L Q+Q GWV AI +A +L +
Sbjct: 27 DAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIAELLGIPAS 84
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG
Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRF 143
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C P +MI +DT+ L PE +E +++ +
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183
>gi|237800541|ref|ZP_04589002.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023401|gb|EGI03458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 165
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ + + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + E+++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAEMLEGY 164
>gi|164687261|ref|ZP_02211289.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
16795]
gi|164603685|gb|EDQ97150.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
16795]
Length = 176
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
++ ++E++ Y + + +I +L +AQ+ G++S + ++ + ++ +AT
Sbjct: 12 DNLKELDEILETY--GKKKGYLITILQKAQDAYGYISIDIMNRISEFTGIKVAKIYGVAT 69
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY QF+L P+G + + +C T C + G E + +V +++ K DG + +V C
Sbjct: 70 FYAQFRLQPIG-KYLIMLCQGTACHVNGSEMISQVISEQLNIKDGETTEDGLFTLNQVSC 128
Query: 141 QGACVNAPMVMI----GKDTYEDLTPERLEEIIDAF 172
G C AP++MI +TY +LT + + EI++
Sbjct: 129 LGCCSLAPVMMIKTEDSDETYGNLTKDSVIEILNQI 164
>gi|66046429|ref|YP_236270.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
B728a]
gi|63257136|gb|AAY38232.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
syringae pv. syringae B728a]
gi|330954560|gb|EGH54820.1| NADH dehydrogenase subunit E [Pseudomonas syringae Cit 7]
gi|330972910|gb|EGH72976.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 165
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ +N + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKNSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164
>gi|332799829|ref|YP_004461328.1| NADH-quinone oxidoreductase subunit E [Tepidanaerobacter sp. Re1]
gi|332697564|gb|AEE92021.1| NADH-quinone oxidoreductase, E subunit [Tepidanaerobacter sp. Re1]
Length = 162
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F+++ + E++ +Y + ++ L AQ G++ E+VA LD+ V
Sbjct: 10 EFTDK-LKQIEEMLKKY--KGQKGTLLQALQEAQNIMGYLPIEVQEMVAETLDITLSEVY 66
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
TFY+ F L P G + ++ C T C +RG EK+++ + ++ + DG S
Sbjct: 67 STITFYSFFSLKPKG-KYQIRTCLGTACYVRGAEKVLDRLKTELGIEVGDTTDDGKFSLN 125
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP ++I + Y LTP+++ +I+ F
Sbjct: 126 ACRCIGACGLAPAIIINDEVYGRLTPDKIPDILKKF 161
>gi|302393030|ref|YP_003828850.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
gi|302205107|gb|ADL13785.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
Length = 163
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + ++++ Y + +IP+L QE+ G++ + ++ ++ L ++ ++ +
Sbjct: 13 EEYLAPLRDILAGYKMKKK--NLIPILQAIQEEYGYLPQQVLKELSENLGVSLSKIYGVT 70
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF L+P G ++VC T C +RG EK++E + ++ D + E V
Sbjct: 71 TFYSQFHLNPRGE-NVIRVCMGTACHVRGGEKILEKIQEELGIDDGETTEDLKFTLESVA 129
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI DT+ LTP+++ EI+ +
Sbjct: 130 CIGACGLAPVIMINDDTHGRLTPDQVPEILAEY 162
>gi|322831987|ref|YP_004212014.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
gi|321167188|gb|ADW72887.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
Length = 178
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E P F S+ + Y +R +A I L Q+ GWV AI ++++L
Sbjct: 17 EPVVPPVFVLSDAEREAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIYAISDVL 74
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V +ATFY+Q PVG R ++ C + C + G + + ++H KP
Sbjct: 75 GIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQQLHIKPGETT 133
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ LTPE + +++ ++
Sbjct: 134 EDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIGSLLERYA 178
>gi|261820795|ref|YP_003258901.1| NADH dehydrogenase subunit E [Pectobacterium wasabiae WPP163]
gi|261604808|gb|ACX87294.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium wasabiae
WPP163]
Length = 181
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
+A+ + ++F S+ + Y +R +A I L Q+ GWV AI +A
Sbjct: 17 VADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIHAIA 74
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 75 DLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI DT+ +TPE +E +++ +
Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIETLLEQYQ 181
>gi|164686660|ref|ZP_02210688.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
16795]
gi|164604050|gb|EDQ97515.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
16795]
Length = 191
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+E+I + S++IP++ Q + ++ + +A+ L + + +ATFY
Sbjct: 38 YEKTDEIIELH--GAKASSLIPVMQDVQAEYRYLPGELLSYIADKLGIPLAKAYSVATFY 95
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F P G + ++VC T C +R + E + K D + E V C
Sbjct: 96 ENFSFDPKG-KYVIKVCDGTACHVRKSVPVREALEKHLGLGKGKQTTDDMMFTIEIVSCL 154
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP++ + + +TP++ EIID G+ +
Sbjct: 155 GACGLAPVMTVNDKVHPKMTPDKAVEIIDELKEGECE 191
>gi|15597836|ref|NP_251330.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAO1]
gi|107102160|ref|ZP_01366078.1| hypothetical protein PaerPA_01003210 [Pseudomonas aeruginosa PACS2]
gi|116050627|ref|YP_790554.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa UCBPP-PA14]
gi|218891199|ref|YP_002440065.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa LESB58]
gi|254235624|ref|ZP_04928947.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
gi|254241072|ref|ZP_04934394.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
gi|296388899|ref|ZP_06878374.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAb1]
gi|313107678|ref|ZP_07793860.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
gi|81540767|sp|Q9I0J8|NUOE_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|9948708|gb|AAG06028.1|AE004692_7 NADH dehydrogenase I chain E [Pseudomonas aeruginosa PAO1]
gi|115585848|gb|ABJ11863.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa UCBPP-PA14]
gi|126167555|gb|EAZ53066.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
gi|126194450|gb|EAZ58513.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
gi|218771424|emb|CAW27191.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa LESB58]
gi|310880362|gb|EFQ38956.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
Length = 166
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F SE + + Y R +A I L Q+Q GWV AI + +L +
Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEVLGI 64
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D
Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165
>gi|227112324|ref|ZP_03825980.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 181
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A+ + ++F S+ + Y +R +A I L Q++ GWV AI +A
Sbjct: 18 ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAE 75
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 76 LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ +TPE +E +++ +
Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181
>gi|291544583|emb|CBL17692.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
18P13]
Length = 166
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + E + ++ + ++ A++P++ +AQ+ G++ +++++ + +
Sbjct: 10 PFHGTAEQEAQLRAMVDQLKDTK--GALMPIMQKAQDIYGYLPIEVQTIISDMTGIPLEK 67
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ +ATFY+QF L P G + VC T C ++G + E + + + +DG S
Sbjct: 68 IYGVATFYSQFSLYPKGQ-YTISVCLGTACYVKGSGDVFEKLKQILGIEDGQCTADGKFS 126
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C GAC AP++ I D Y LT E L I++ +
Sbjct: 127 LEACRCIGACGLAPVMTINDDVYGRLTVEELPAILEKY 164
>gi|71733608|ref|YP_275282.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257485442|ref|ZP_05639483.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289625429|ref|ZP_06458383.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289649288|ref|ZP_06480631.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
2250]
gi|289679199|ref|ZP_06500089.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
FF5]
gi|298487551|ref|ZP_07005593.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|302185026|ref|ZP_07261699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
642]
gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157935|gb|EFH99013.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323791|gb|EFW79875.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327930|gb|EFW83935.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866835|gb|EGH01544.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330881186|gb|EGH15335.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330889657|gb|EGH22318.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. mori str.
301020]
gi|330900628|gb|EGH32047.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330987945|gb|EGH86048.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331010724|gb|EGH90780.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 165
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164
>gi|300723693|ref|YP_003713000.1| NADH dehydrogenase I subunit E [Xenorhabdus nematophila ATCC 19061]
gi|297630217|emb|CBJ90868.1| NADH dehydrogenase I chain E [Xenorhabdus nematophila ATCC 19061]
Length = 181
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 3/165 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ P F S E + + Y R +A I L Q+Q GWV AI +A +L
Sbjct: 20 DAQTPDEFVLSAEERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVL 77
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V +ATFY+Q PVG R ++ C + C + G + + + ++ +P
Sbjct: 78 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQGVQAAIESHLNIRPGQTT 136
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+DG + C G C P +MI +DT+ + PE +E++++ +
Sbjct: 137 ADGRFTLLPTCCLGNCDKGPAMMIDEDTHCYVRPEEIEKLLEQYQ 181
>gi|312144192|ref|YP_003995638.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
'sapolanicus']
gi|311904843|gb|ADQ15284.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
'sapolanicus']
Length = 160
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
VNE++ RY + + +IP+L AQE+ G++ + +A L+++ +V + TFY
Sbjct: 13 LKPVNEILGRY--EKKERYLIPVLQEAQEEYGYLPEEVLTEIALRLNLSLSQVYGVVTFY 70
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+QF P G ++VC T C +RG +++ + ++ D + E V C G
Sbjct: 71 SQFHQEPRG-NNIIRVCMGTACHVRGGGQILSALKEELEIDSGETTDDLNFTLESVACIG 129
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++M+ DT+ L PE + I+ +
Sbjct: 130 ACGLAPVIMVNDDTHGRLIPEEIPSILAKYK 160
>gi|227326164|ref|ZP_03830188.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 181
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A+ + ++F S+ + Y +R +A I L Q++ GWV AI +A+
Sbjct: 18 ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAD 75
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP
Sbjct: 76 LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ +TPE +E +++ +
Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181
>gi|108760187|ref|YP_629346.1| NADH dehydrogenase I subunit E [Myxococcus xanthus DK 1622]
gi|108464067|gb|ABF89252.1| NADH dehydrogenase I, E subunit [Myxococcus xanthus DK 1622]
Length = 162
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 18 FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F+ E + E+IS YPP R + ++P L QE +GW+ + +VA L++
Sbjct: 6 FTSEEQKKFDAGIAEIISHYPPDRKSAGMLPALRLLQEIKGWLPPEGLRLVAKHLEVTPE 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
R +E+A+FY + L + + VC C L G EK++ K+ K N
Sbjct: 66 RAMEVASFYVMYHLK-KPGKYVIDVCTNLSCSLWGAEKMLAYLEEKLGLKAGEANEK--F 122
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ E EC +C AP + I +D +E LT +L+ I+
Sbjct: 123 TLRETECLASCGTAPCLQINEDHHESLTQAKLDAILAKL 161
>gi|238897508|ref|YP_002923187.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465265|gb|ACQ67039.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 174
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 7/176 (3%)
Query: 1 MSVRR-LAEEEFQPSS---FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
MS + L+E + + F S E + E Y +R +A I L Q++ GWV
Sbjct: 1 MSHHKNLSEHQIDAMNVVPFVLSSEERDAIEEEKHHYEDAR--AASIEALKIVQKKRGWV 58
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
AI +A +L + V +ATFY+Q PVG R ++ C + C + G +K+ V
Sbjct: 59 PDEAIHAIAEVLGIPASDVEGVATFYSQIFRKPVG-RHVIRYCDSVVCYITGYQKIQAVL 117
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
K+ +P DG + C G C P +MI DT+ L E ++ +++ +
Sbjct: 118 EEKLGIQPGQTTKDGRFTLLPTCCLGNCDKGPTMMIDDDTHSHLQIENIDTLLEQY 173
>gi|255994341|ref|ZP_05427476.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
gi|255993054|gb|EEU03143.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
Length = 163
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ ++ ++S Y + ++I +L + Q+ G++ I+ ++ + ++ +A
Sbjct: 6 KKDFSKIDNILSEYAD--KEGSLITILQKTQDAYGYLPMDVIDYISEKTGIRAAKIYGVA 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF+L P+G + + +C T C + G + + EV ++ K DG + V
Sbjct: 64 TFYSQFRLKPIG-KYLIMLCQGTACHVNGSDSVREVVSEHLNIKDGETTEDGVFTLNNVA 122
Query: 140 CQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFST 174
C G C AP++M+ G++TY LT +++ +++D
Sbjct: 123 CLGCCSIAPVMMVQTVEGEETYGQLTKDKVIKLLDEIRA 161
>gi|188584738|ref|YP_001916283.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349425|gb|ACB83695.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 162
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ + E++++Y + A+I L + QE G++ ++ VA DM +V +A
Sbjct: 12 KKEEQQLEEILAQY--KNEKGALITALQKVQEFYGYLPEEGMQKVAEAFDMPESKVFGVA 69
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF L P G ++VC T C +RG EK++ +++ +P D + E V
Sbjct: 70 TFYAQFHLQPRGE-WVIRVCTGTACHVRGAEKIMNKLIEELNIEPGETTEDLKFTLEPVA 128
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C AP++M+ +T+ L P+++ EI+D +
Sbjct: 129 CIGCCGLAPVIMVNDNTHGRLVPDQIPEILDKYK 162
>gi|271501265|ref|YP_003334290.1| NADH-quinone oxidoreductase subunit E [Dickeya dadantii Ech586]
gi|270344820|gb|ACZ77585.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech586]
Length = 176
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
A + F S+ + Y +R +A I L Q+Q GWV AI +A
Sbjct: 12 DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAINAIA 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 70 DVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ L P+ L+ +++ +
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDLDSLLEQYQ 176
>gi|332800414|ref|YP_004461913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
sp. Re1]
gi|332698149|gb|AEE92606.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
sp. Re1]
Length = 167
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ VNE++ +Y S +I + QE ++ + ++ + +A R+ +ATF
Sbjct: 9 NFEKVNEILEKY--DYKPSNLISIFQEVQEIYRYLPEEILVYISTAMRIAPSRIFGVATF 66
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVEC 140
Y F L P G + ++VC T C +R +K++ + ++ K D + E V C
Sbjct: 67 YESFSLEPKG-KNLIKVCDGTACHVRNSDKILSTTKEILNLKGDAKTTDDMLFTLETVSC 125
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
GAC AP+++I Y ++TPE++ ++I+
Sbjct: 126 LGACGLAPVIVINDKVYGNMTPEKVRQLINDIKE 159
>gi|293395173|ref|ZP_06639459.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
gi|291422350|gb|EFE95593.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
Length = 183
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F S E + Y R +A I L Q++ GWV AI +A++L +
Sbjct: 27 DAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 84
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG
Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTGDGRF 143
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C P +MI +DT+ L PE +E +++ +
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIENLLEQYQ 183
>gi|238784997|ref|ZP_04628995.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
43970]
gi|238714113|gb|EEQ06127.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
43970]
Length = 187
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
AE F S E + Y +R +A I L Q+ GWV AI +A
Sbjct: 24 AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKGRGWVPDGAIHAIAE 81
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P
Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|310768162|gb|ADP13112.1| NADH dehydrogenase subunit E [Erwinia sp. Ejp617]
Length = 171
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEF-QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +R+A E + +F S + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + +
Sbjct: 59 AIDAIAEVLGIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171
>gi|289522360|ref|ZP_06439214.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289504196|gb|EFD25360.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 166
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ + +I + + I LL + QE G++ + + VA LD+ + +A
Sbjct: 6 QDDEQALQNIIETF--RGKKGITISLLSKIQESYGYLPQEVLSRVAKELDIPEASLYGVA 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ P+G + +++C T C ++G + + + DG + E V
Sbjct: 64 TFYAMFRFKPLG-KYTIKLCRGTACHVQGSLLIAQEVMRHLGISEGETTDDGLFTLELVA 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G C AP++M+G+D Y LTP+R +++D++ T +
Sbjct: 123 CLGCCSLAPVMMVGEDVYGRLTPDRAVKVLDSYRTNK 159
>gi|167629825|ref|YP_001680324.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
[Heliobacterium modesticaldum Ice1]
gi|167592565|gb|ABZ84313.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
[Heliobacterium modesticaldum Ice1]
Length = 191
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q E + ++ +Y R A+IPLL QE G++ A+E +A L +
Sbjct: 32 GQTDRTKRETEKDRRLAALLEKYREER--GALIPLLQGVQEIYGYLPGPAMERIARTLRL 89
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
+V +ATFY QF +P G R ++VC T C +RG ++ E R ++ + +D
Sbjct: 90 PAAQVYGVATFYAQFHFAPRG-RHVIRVCLGTACHVRGGARIFEALRRQLGVEDGGTTAD 148
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ E V C GAC AP++MI DT+ LTPE L I+ +
Sbjct: 149 LRYTLESVACIGACGLAPVIMIDDDTHGRLTPESLPGILARY 190
>gi|302340165|ref|YP_003805371.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
11293]
gi|301637350|gb|ADK82777.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
11293]
Length = 161
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
FS+ ++ E +I +L + QE+ G++ R A + VA++LD+ +
Sbjct: 8 EMKFSDSLVAFIEEW------KNKPGNLIMILHKVQEEFGYIPREAAKRVASMLDVPLAK 61
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + TFY F+L + ++QVC T C L+G E +I+ N + DG S
Sbjct: 62 IYGVVTFYHFFKL-TKPGKHNIQVCMGTACYLKGGEDIIQELENILGIGVNQVTPDGQFS 120
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
E V C G C AP+++IG + + LT E+L EI+ F
Sbjct: 121 LEAVRCVGCCGLAPVMVIGDEVFGKLTKEQLPEILAKFQE 160
>gi|148546981|ref|YP_001267083.1| NADH dehydrogenase subunit E [Pseudomonas putida F1]
gi|148511039|gb|ABQ77899.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida F1]
Length = 165
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVNQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164
>gi|251789017|ref|YP_003003738.1| NADH-quinone oxidoreductase subunit E [Dickeya zeae Ech1591]
gi|247537638|gb|ACT06259.1| NADH-quinone oxidoreductase, E subunit [Dickeya zeae Ech1591]
Length = 176
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
A + F S+ + Y +R +A I L Q+Q GWV AI+ +A
Sbjct: 12 DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIDAIA 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
IL + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 70 EILGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +M+ +DT+ L P+ L+ +++ +
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMVDEDTHSQLKPDDLDSLLEQYQ 176
>gi|310659597|ref|YP_003937318.1| NADH:ubiquinone oxidoreductase, chain e [Clostridium sticklandii
DSM 519]
gi|308826375|emb|CBH22413.1| NADH:ubiquinone oxidoreductase, chain E [Clostridium sticklandii]
Length = 175
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ +I +Y + + A I +L QE+ G++ ++ +A M ++ +ATF
Sbjct: 17 DLSLIDPIIEKY--GKIKGATITILQGVQEEYGYIPSESLTYIAQKTGMKEAKLYGVATF 74
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
YTQF+++PVG + + +C T C + G + + ++ D ++ V C
Sbjct: 75 YTQFRMNPVG-KNLILLCQGTACHVNGASTIEKAICEELGITEGETTLDKIFTFTNVACL 133
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C AP++MI +TY LTPE+ E++
Sbjct: 134 GCCSLAPVMMINGETYAKLTPEKTVEVLRNLRK 166
>gi|323704273|ref|ZP_08115852.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323536339|gb|EGB26111.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 160
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
FS+E+ + +VI + + ++I ++ AQE G++ + ++ +++ +
Sbjct: 7 KFSQENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + VC T C ++G +++ + K+ DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ +E+I+ F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159
>gi|261416515|ref|YP_003250198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261372971|gb|ACX75716.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327348|gb|ADL26549.1| NADH-quinone oxidoreductase, E subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 353
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ E +++SRYP Q+A++ +L Q GWV R I AN+ A L +
Sbjct: 57 TPEIKERCADLLSRYPVG--QAALLEVLWLVQGVFGWVPREGIRWAANVCGCAPAHALGV 114
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFYT + + +Q C C ++G LI + ++ K DG + +V
Sbjct: 115 ATFYTMYN-HAPKGKFLLQFCRNISCTIKGAPSLIAYVEHALNIKTGETTPDGLFTILQV 173
Query: 139 ECQGACVNAPMVMIGKDTYED-------------LTPERLEEIIDAFSTGQGDTIR 181
EC G+C N PM+++ D D LT + ++ I+ + + +
Sbjct: 174 ECLGSCGNGPMMLVNDDFATDADGDVLTMKPGTKLTTDSIDRILKWCYAHEDNIPK 229
>gi|77459828|ref|YP_349335.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
gi|77383831|gb|ABA75344.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
Length = 165
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV A+ + IL +
Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ +N + +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNNLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164
>gi|152985085|ref|YP_001347931.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PA7]
gi|150960243|gb|ABR82268.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa PA7]
Length = 166
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIPAIGEVLGI 64
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D
Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165
>gi|167034690|ref|YP_001669921.1| NADH dehydrogenase subunit E [Pseudomonas putida GB-1]
gi|166861178|gb|ABY99585.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida GB-1]
Length = 165
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164
>gi|26990816|ref|NP_746241.1| NADH dehydrogenase subunit E [Pseudomonas putida KT2440]
gi|325277475|ref|ZP_08143080.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subunit [Pseudomonas putida KT2440]
gi|324097391|gb|EGB95632.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
Length = 165
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164
>gi|304312243|ref|YP_003811841.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
gi|301797976|emb|CBL46198.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
Length = 180
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E A + +S+YP + Q+ I L Q GWVS +++ VA L ++ V
Sbjct: 24 LSPEEAAEILAGLSQYPDN--QAMSIEALKIVQHHRGWVSNESLKAVAAFLRLSPEEVEG 81
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY VGT V+VC + C + GCE L+ +NK+ +DG +
Sbjct: 82 VATFYNLVYRQRVGT-HVVRVCDSVSCWIMGCEALVGELQNKLQLTLGETTADGRFTLLP 140
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC +AP+VM+G D + D+ E ++ ++ +
Sbjct: 141 GPCMGACDHAPVVMVGDDYHFDVKAEAIDALLKPYRQ 177
>gi|70731259|ref|YP_261000.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf-5]
gi|68345558|gb|AAY93164.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas fluorescens
Pf-5]
Length = 165
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV A+ + IL +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAVYAIGEILGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164
>gi|270262811|ref|ZP_06191082.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
gi|270043495|gb|EFA16588.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
Length = 183
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F S E + Y R +A I L Q+Q GWV AI +A +L +
Sbjct: 27 DAFVLSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPAS 84
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG
Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRF 143
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C P +MI +DT+ L PE +E +++ +
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183
>gi|308187601|ref|YP_003931732.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
gi|308058111|gb|ADO10283.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
Length = 171
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQP-SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M + +A + P F S E + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + +
Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPGLLEQYQ 171
>gi|270297047|ref|ZP_06203246.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
gi|270273034|gb|EFA18897.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
Length = 158
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A L + RV + TFYT
Sbjct: 12 KQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRIIAAQLGIPVSRVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F + P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMLPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L P +++I++
Sbjct: 129 CGLAPVVMIGEKVYGRLQPIDVKKILEEL 157
>gi|289578039|ref|YP_003476666.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
italicus Ab9]
gi|289527752|gb|ADD02104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
italicus Ab9]
Length = 160
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F EE + + ++I ++ AQE G++ ++ +++ +
Sbjct: 7 KFGEEKVERFKKALEE--LKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + +C T C +RG ++E + K+ + DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ ++EI+ F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159
>gi|104782524|ref|YP_609022.1| NADH dehydrogenase subunit E [Pseudomonas entomophila L48]
gi|95111511|emb|CAK16231.1| NADH dehydrogenase I chain E [Pseudomonas entomophila L48]
Length = 165
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164
>gi|266619024|ref|ZP_06111959.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
gi|288869445|gb|EFD01744.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
Length = 164
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ ++ Q FS ++E + EVIS + A++P++ +AQ+ G++
Sbjct: 1 MACKK------QGVLFSGTKEQEAALKEVISE--LKGTKGALMPIMQKAQDIYGYLPIEV 52
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++++ + ++ +ATFY QF L P G + V VC T C ++G + + +
Sbjct: 53 QTMISDETGIPLEKIYGVATFYAQFALQPKG-KYQVSVCLGTACYVKGSGDIYDKLVELL 111
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++MI + Y LTP+ + I+ +
Sbjct: 112 GITNGECTPDGKFSLDSCRCVGACGLAPVMMINGEVYGRLTPDDVPGILAKY 163
>gi|170721054|ref|YP_001748742.1| NADH dehydrogenase subunit E [Pseudomonas putida W619]
gi|169759057|gb|ACA72373.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida W619]
gi|313498028|gb|ADR59394.1| NADH dehydrogenase subunit E [Pseudomonas putida BIRD-1]
Length = 165
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D
Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164
>gi|326402926|ref|YP_004283007.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
AIU301]
gi|325049787|dbj|BAJ80125.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
AIU301]
Length = 165
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++A I L Q++ G VS + VA +L M + +ATFY PVG R + +
Sbjct: 32 RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C + G + R ++ +P DG + + C G C AP +MIG D +
Sbjct: 91 CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150
Query: 159 DLTPERLEEIIDAFS 173
+LTPER++ I++ +
Sbjct: 151 NLTPERIDAILEQYR 165
>gi|148260121|ref|YP_001234248.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
gi|146401802|gb|ABQ30329.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
Length = 165
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++A I L Q++ G VS + VA +L M + +ATFY PVG R + +
Sbjct: 32 RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C + G + R ++ +P DG + + C G C AP +MIG D +
Sbjct: 91 CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150
Query: 159 DLTPERLEEIIDAFS 173
+LTPER++ I++ +
Sbjct: 151 NLTPERIDAILEQYR 165
>gi|329296022|ref|ZP_08253358.1| NADH-quinone oxidoreductase subunit E [Plautia stali symbiont]
Length = 171
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +++A + P+ F SE + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQKIAIQTIDPTEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A +L + V +ATFY+Q +PVG ++ C + C + G + +
Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRTPVGC-HVIRYCDSVVCHITGYQGIQAALEQN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIANLLEQYQ 171
>gi|304398213|ref|ZP_07380087.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
gi|304354079|gb|EFM18452.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
Length = 171
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQP-SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M + +A + P F S E + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + +
Sbjct: 59 AINAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPSLLEQYQ 171
>gi|284106849|ref|ZP_06386292.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Poribacteria sp. WGA-A3]
gi|283830028|gb|EFC34304.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Poribacteria sp. WGA-A3]
Length = 155
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
++PLL AQ +EG+VS+AAI +A ILD+ +V E ATFYT L P+G + H+QVC +
Sbjct: 1 MLPLLNLAQREEGYVSQAAIREIAGILDLTPPQVFETATFYTMLNLKPIG-KFHIQVCRS 59
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
C L G + LIE R + D + VEC G+C PM+ I D YE LT
Sbjct: 60 LMCALVGADPLIEWLRTHLGIGVGQTTDDKLFTLSAVECLGSCGTGPMMQINDDYYERLT 119
Query: 162 PERLEEIIDAFSTGQGDTIRPGP 184
E++ I+ ++ GP
Sbjct: 120 EEKVGLIVRDLRETGDSAMKSGP 142
>gi|317048936|ref|YP_004116584.1| NADH-quinone oxidoreductase subunit E [Pantoea sp. At-9b]
gi|316950553|gb|ADU70028.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. At-9b]
Length = 171
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQP-SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +++A + P F SE + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQKIAIQTIDPNEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A +L + V +ATFY+Q PVG R ++ C + C + G + +
Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+H KP DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LHIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIATLLEQYQ 171
>gi|134301121|ref|YP_001114617.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
gi|134053821|gb|ABO51792.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
Length = 177
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ +P F +E + I+ + A+I +L +AQ G++ R +A L
Sbjct: 8 DVMEPVEQEFPKEKYDELESFINS--LETTKGALIEILHKAQHIFGYLPRDVQLFIARKL 65
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V + +FY+ F P + + VC T C +RG +K++E + ++ +
Sbjct: 66 GIPGAEVYGVVSFYSYFTTKP-SGKHTISVCMGTACFVRGADKIVEKFKERLGIESNETT 124
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + ++V C GAC AP+VM+ Y + E +++II+ +
Sbjct: 125 EDGLFTIKDVRCIGACGLAPVVMVDDKVYGRVKVEDVDDIINIYR 169
>gi|238751245|ref|ZP_04612739.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
gi|238710519|gb|EEQ02743.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
Length = 187
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F S E + Y +R +A I L Q++ GWV AI +A++L +
Sbjct: 31 EVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 88
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG
Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRF 147
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ L PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186
>gi|50121948|ref|YP_051115.1| NADH dehydrogenase subunit E [Pectobacterium atrosepticum SCRI1043]
gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase chain E [Pectobacterium atrosepticum
SCRI1043]
Length = 181
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
+F S+ + Y +R +A I L Q+ GWV AI +A++L +
Sbjct: 26 AFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAINAIADLLGIPASD 83
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG +
Sbjct: 84 VEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERKLSIKPGQTTFDGRFT 142
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P +MI DT+ +TPE +E +++ +
Sbjct: 143 LLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQYQ 181
>gi|307131811|ref|YP_003883827.1| NADH:ubiquinone oxidoreductase subunit E [Dickeya dadantii 3937]
gi|306529340|gb|ADM99270.1| NADH:ubiquinone oxidoreductase, chain E [Dickeya dadantii 3937]
Length = 176
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
A + F S+ + Y +R +A I L Q+ GWV AI+ ++
Sbjct: 12 DAPAQAASDIFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKHRGWVPDGAIDAIS 69
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP
Sbjct: 70 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPG 128
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + C G C P +MI +DT+ L P+ ++ +++ +
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDIDSLLEQYQ 176
>gi|255525708|ref|ZP_05392640.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296184812|ref|ZP_06853223.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
gi|255510610|gb|EET86918.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296050594|gb|EFG90017.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
Length = 166
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+++V +Y ++ +L AQ+ G++ ++ +A+ +V +ATF
Sbjct: 10 DLSLMDKVFDKYYKGN--GNIVSMLQDAQDIYGYLPLDVLKAIADKTGNKRTKVYGVATF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+QF+L+P G + + C T C + E + +++ P +SDG S+E V C
Sbjct: 68 YSQFRLNPRG-KYMILQCQGTACHVNNSEVIGNAICDELGINPGETSSDGMFSFEHVACL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
G C AP++MI + Y +LTP+++ +II + +
Sbjct: 127 GCCSLAPVIMINGEAYGNLTPDKVRKIIRDIYAREKEE 164
>gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct]
Length = 167
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F SE + + Y R +A I L Q++ GWV AI + +L +
Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKRRGWVPDGAIPAIGEVLGI 64
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D
Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP +MI DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165
>gi|9719441|gb|AAF97801.1|AF281148_5 NADH dehydrogenase I subunit E [Pseudomonas fluorescens]
Length = 166
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 4/168 (2%)
Query: 6 LAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
+ E+ P F SE + + Y R +A I L Q++ GWV A+ +
Sbjct: 1 MHEQHAYPDRPFRLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAI 58
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
IL + V +ATFY+Q PVG R ++VC + C + G E ++ +NK+
Sbjct: 59 GEILGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGL 117
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+DG + V C G C AP +MI DT+ D+ P+ + ++++ +
Sbjct: 118 GQTTADGRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 165
>gi|296132261|ref|YP_003639508.1| NADH-quinone oxidoreductase, E subunit [Thermincola sp. JR]
gi|296030839|gb|ADG81607.1| NADH-quinone oxidoreductase, E subunit [Thermincola potens JR]
Length = 158
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++++Y + A+IP+L + Q+ G++ + A++ ++ L + + + TFY
Sbjct: 11 QEALEALLAKYKS--QKGALIPVLQQTQDIYGYLPKEALQQISRELKIPLSEIFGVCTFY 68
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF LSP G R ++VC T C +RG K+ E + ++ K D + E V C G
Sbjct: 69 AQFHLSPRG-RNIIRVCLGTACHVRGGAKIFERVQQELGIKDGETTEDLRFTIESVACIG 127
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP++M+ DT+ LTP+++ +I+ +
Sbjct: 128 ACGLAPVIMVNDDTHGRLTPDQIPDILAQY 157
>gi|257053165|ref|YP_003130998.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
utahensis DSM 12940]
gi|256691928|gb|ACV12265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
utahensis DSM 12940]
Length = 186
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ V EV+ P ++ VIP L QE+ G++ + +E++A + V A
Sbjct: 36 DDEIETVREVLVDVPTAKE--GVIPALQDVQEEYGYLPKFTMELIAEHTGTSIAHVYGTA 93
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY+QF + P G ++VC T C ++G +++ E +++ DG + + V
Sbjct: 94 SFYSQFHMEPRGD-HTIKVCTGTACHVKGADEVSEAFCDELDVDLQDVTDDGKFTVDHVR 152
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC A VM+G + Y D+ P+ ++++I+ +
Sbjct: 153 CIGACSLAVAVMVGDEVYGDVQPDEVDQVIEEYR 186
>gi|124266600|ref|YP_001020604.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
[Methylibium petroleiphilum PM1]
gi|124259375|gb|ABM94369.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
[Methylibium petroleiphilum PM1]
Length = 162
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ SE + + +++YP + QSAV+ L Q+++G VS A +A L M I V
Sbjct: 1 MTLSEATKARFDREVAKYPAEQRQSAVMACLAIVQQEQGHVSADAERAIAAHLGMPPIAV 60
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ TFY + PVG R + VC PC LR E ++ K+ +P +DG +
Sbjct: 61 HEVTTFYNMYNQQPVG-RFKLNVCTNLPCQLRDGETALQHVCKKLGVEPYGSTADGVFTV 119
Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEE 167
+ EC GAC +AP++++ +T +RL+E
Sbjct: 120 QPSECLGACADAPVMLLNDRQMLSFMTEQRLDE 152
>gi|262195155|ref|YP_003266364.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
14365]
gi|262078502|gb|ACY14471.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
14365]
Length = 172
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
S FS E+ ++ + RYP Q V+ L AQ++ G +S A+ VVA L++ Y
Sbjct: 8 SPLEFSAEARQKIDALSQRYPT--KQPVVLAALHLAQKEFGHLSDDALRVVAKTLELPYP 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFYT F+ P + ++VC CMLRG ++E ++ K +S G
Sbjct: 66 HVYGVATFYTMFRRQP-AGKNVLRVCTNISCMLRGAYDVLEAFEKRLGIKVG--DSSGDF 122
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
E EC AC NAP V+ G + D+ P +++EIID +
Sbjct: 123 HLVEEECIAACANAPAVICGTKYFLDVEPSQVDEIIDFLE--KTPHPE 168
>gi|295110159|emb|CBL24112.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus obeum
A2-162]
Length = 159
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y R +++IP++ Q + ++ + VA+ + + +
Sbjct: 2 LDQSYYAKTDEIIEHY--GRKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R + E ++ H D + E
Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP + + + + +TPE+ E+++
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIELLNELR 155
>gi|295798104|emb|CAX68923.1| NADH-quinone oxidoreductase 24 kD subunit E [uncultured bacterium]
Length = 161
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + + + YP ++ ++P+L QEQ ++ E VA + V E+
Sbjct: 10 ETLRHQADSICANYPV--KRAGLLPVLRLIQEQYSFIPPHVEEQVAQYFQIPPADVREVM 67
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFYT F P + + VC T C L G ++++ K+ KP +DG + +EVE
Sbjct: 68 TFYTLFHSKPR-AKCEINVCRTLSCSLMGAKEMVAYISEKLGIKPGETTADGRFTLKEVE 126
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC APM +G + LT E+++ II +
Sbjct: 127 CLGACEIAPMAQVGHEYVGPLTREKIDHIIQQY 159
>gi|146295663|ref|YP_001179434.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409239|gb|ABP66243.1| NADH dehydrogenase subunit E [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 174
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E S+F + ++ V+ Y +S +I +L + QE ++ A+ ++
Sbjct: 7 ENRLASNFKNQKVDLSLLDPVLDEY--KGEKSNIIAILQKTQEIYRFLPLDALNYISEKT 64
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ ++ IATFY QF+L PVG + + C T C + G E++ ++++ KP
Sbjct: 65 GVKKAKIYGIATFYAQFRLKPVG-KYVILQCQGTACHVNGSEEIKNALCDELNIKPGDTT 123
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + EEV C G C AP++MI +TY LTP++ EII
Sbjct: 124 EDGMFTLEEVACLGCCSLAPVMMINGETYGKLTPDKAREIIRRI 167
>gi|291618186|ref|YP_003520928.1| NuoE [Pantoea ananatis LMG 20103]
gi|291153216|gb|ADD77800.1| NuoE [Pantoea ananatis LMG 20103]
gi|327394579|dbj|BAK12001.1| NADH-quinone oxidoreductase chain E NuoE [Pantoea ananatis AJ13355]
Length = 171
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEFQP-SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M + +A + P F S E + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI +A++L + V +ATFY+Q PVG R ++ C + C + G + +
Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEEN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQYQ 171
>gi|320540449|ref|ZP_08040099.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
symbiotica str. Tucson]
gi|320029380|gb|EFW11409.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
symbiotica str. Tucson]
Length = 183
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
+F S E + Y R +A I L Q++ GWV AI +A +L +
Sbjct: 28 AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIAQVLGIPASD 85
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG +
Sbjct: 86 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEQKLNIKPGQTTVDGRFT 144
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P +MI +DT+ L PE +E +++ +
Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183
>gi|326202422|ref|ZP_08192291.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325987540|gb|EGD48367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 178
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ +P+ +E + I + A+I +L +AQ G++ R VA L
Sbjct: 8 DVMEPAERKPPKEKFDQLEAYIES--LETTKGALIEILHKAQNIFGYLPRDVQLFVARKL 65
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V + +FY+ F P G V VC T C +RG +K+IE + K+ +
Sbjct: 66 GIPGAEVYGVVSFYSYFTTKP-GGLHTVSVCMGTACFVRGADKVIEKFKEKLGIESNETT 124
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
DG + ++V C GAC AP+VM+ + + E +++II+ + + + +
Sbjct: 125 KDGLFTLKDVRCIGACGLAPVVMVDDKVFGRVKVEDVDDIIEMYRSNKEE 174
>gi|167037868|ref|YP_001665446.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040765|ref|YP_001663750.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
sp. X514]
gi|256750975|ref|ZP_05491858.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914803|ref|ZP_07132119.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
gi|307723963|ref|YP_003903714.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
sp. X513]
gi|320116285|ref|YP_004186444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166855005|gb|ABY93414.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
sp. X514]
gi|166856702|gb|ABY95110.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750085|gb|EEU63106.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889738|gb|EFK84884.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
gi|307581024|gb|ADN54423.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
sp. X513]
gi|319929376|gb|ADV80061.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 160
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F EE + + ++I ++ AQE G++ ++ +++ +
Sbjct: 7 KFGEEKVERFKKALEE--LKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + +C T C +RG ++E + K+ + DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKINLCMGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ ++EI+ F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159
>gi|323484498|ref|ZP_08089864.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
WAL-14163]
gi|323692559|ref|ZP_08106792.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
gi|323402276|gb|EGA94608.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
WAL-14163]
gi|323503425|gb|EGB19254.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
Length = 164
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F+ + E + VIS + A++P+L AQE G++ ++++ + ++
Sbjct: 10 FTCTAEQEADLKRVISELKDT--AGALMPILQHAQEIFGYLPIEVQTMISDETGIPLEKI 67
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+QF L P G + VC T C ++G + + + DG S
Sbjct: 68 YGVATFYSQFSLQPKGQ-YRISVCLGTACYVKGSGDIFKKLEELLGITNGECTPDGKFSL 126
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP++MI + Y LT + + I+ +
Sbjct: 127 DSCRCVGACGLAPVMMINDEVYGRLTVDDVPTILAKY 163
>gi|269139727|ref|YP_003296428.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
EIB202]
gi|267985388|gb|ACY85217.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
EIB202]
gi|304559594|gb|ADM42258.1| NADH-ubiquinone oxidoreductase chain E [Edwardsiella tarda FL6-60]
Length = 166
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++A I L Q++ GWV AAI +A +L + V +ATFY+Q PVG R V+
Sbjct: 33 RAASIEALKIVQKEHGWVPDAAIGAIAEVLGIPAADVEGVATFYSQIFRQPVG-RHIVRY 91
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C + G + + K++ +P DG + C G C P +MI D ++
Sbjct: 92 CDSVVCHINGYQGIKAALEQKLNIQPGETTFDGRFTLLPTCCLGNCDKGPNMMIDDDLHD 151
Query: 159 DLTPERLEEIIDAFS 173
LTPER E+++ +
Sbjct: 152 HLTPERALELLERYK 166
>gi|330981368|gb|EGH79471.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 165
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q++ GWV AI + ++L +
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D
Sbjct: 64 PASDVEGVATFYSQIFPQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G + V C G C AP VM+ DT+ D+ P + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164
>gi|253576870|ref|ZP_04854195.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843737|gb|EES71760.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 174
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
EE V E+I ++ + A+IP+L Q+ G++ A+++V+ L M+ + +
Sbjct: 17 DEERLHRVGEIIDQF--RQLPGALIPVLHEIQDLYGYLPEEALQIVSRELGMSMAEIYGV 74
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY+ F L P G ++VC T C ++G + +++ +++ +DG + +
Sbjct: 75 ATFYSFFSLEPKGE-HIIRVCMGTACYIKGAQGVLDRLSQELNVPVQGTTADGKFTLDAT 133
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC AP++ IG+ + LTP + +I+
Sbjct: 134 RCLGACGLAPVMTIGEKVHGRLTPNEIPKILKQMR 168
>gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
gi|4980495|gb|AAD35106.1|AE001689_12 NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
Length = 176
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + I + A+I +L +AQE G++ +E +++ LD+ +V +
Sbjct: 20 EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 79
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G + ++VC T C ++G +++ E ++ P SDG S V
Sbjct: 80 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 138
Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFS 173
C GAC AP+VM+ D Y +TP+ + +II +
Sbjct: 139 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYK 173
>gi|293371346|ref|ZP_06617783.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
ovatus SD CMC 3f]
gi|298481912|ref|ZP_07000101.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
gi|315919437|ref|ZP_07915677.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
gi|292633706|gb|EFF52261.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
ovatus SD CMC 3f]
gi|298271776|gb|EFI13348.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
gi|313693312|gb|EFS30147.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
Length = 158
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ A + + ++ +I +L AQ +G++ ++A+ L + +V + T
Sbjct: 9 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 66
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F ++P G + + VC T C +RG EKL+E + + + DG S + + C
Sbjct: 67 FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 125
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+VMIG+ Y L P +++II+
Sbjct: 126 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157
>gi|237715805|ref|ZP_04546286.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262407420|ref|ZP_06083968.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|294646921|ref|ZP_06724542.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
ovatus SD CC 2a]
gi|294810788|ref|ZP_06769434.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
xylanisolvens SD CC 1b]
gi|229443452|gb|EEO49243.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262354228|gb|EEZ03320.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|292637866|gb|EFF56263.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
ovatus SD CC 2a]
gi|294441976|gb|EFG10797.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
xylanisolvens SD CC 1b]
Length = 158
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ + + ++ +I +L AQ +G++ ++A+ L + +V + T
Sbjct: 9 DMTEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 66
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F ++P G + + VC T C +RG EKL+E + + + DG S + + C
Sbjct: 67 FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 125
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+VMIG+ Y L P +++II+
Sbjct: 126 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157
>gi|148270045|ref|YP_001244505.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
petrophila RKU-1]
gi|170288729|ref|YP_001738967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
gi|281412074|ref|YP_003346153.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
naphthophila RKU-10]
gi|147735589|gb|ABQ46929.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
petrophila RKU-1]
gi|170176232|gb|ACB09284.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
gi|281373177|gb|ADA66739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
naphthophila RKU-10]
Length = 162
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + I + A+I +L +AQE G++ +E +++ LD+ +V +
Sbjct: 6 EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G + ++VC T C ++G +++ E ++ P SDG S V
Sbjct: 66 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 124
Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFS 173
C GAC AP+VM+ D Y +TP+ + +II +
Sbjct: 125 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYK 159
>gi|188533350|ref|YP_001907147.1| NADH dehydrogenase subunit E [Erwinia tasmaniensis Et1/99]
gi|292488840|ref|YP_003531727.1| NADH dehydrogenase I subunit E [Erwinia amylovora CFBP1430]
gi|292899991|ref|YP_003539360.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
gi|188028392|emb|CAO96253.1| NADH dehydrogenase I chain E [Erwinia tasmaniensis Et1/99]
gi|291199839|emb|CBJ46963.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
gi|291554274|emb|CBA21593.1| NADH dehydrogenase I chain E [Erwinia amylovora CFBP1430]
gi|312173000|emb|CBX81255.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC BAA-2158]
Length = 171
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEF-QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +R+A E + +F S + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + +
Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171
>gi|94676865|ref|YP_588822.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|94220015|gb|ABF14174.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 167
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
++F + E + + ++Y +R S I L Q+Q GWV +AI+ +AN L ++
Sbjct: 11 TNFKLNPELYQAIQQEKNKYEDARAVS--IEALKMVQKQYGWVPDSAIQAIANTLGISGS 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V E+ATFY+ PVG R ++ C + C + G + + N ++ KP DG
Sbjct: 69 DVEEVATFYSNIFRQPVG-RHVIRYCNSVVCYITGYQTIQTKLENCLNIKPGKTTPDGRF 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ C G C P +MI DTY LT E + ++++
Sbjct: 128 TLLPTCCLGNCDKGPTMMINDDTYVHLTAENICQLLE 164
>gi|83590720|ref|YP_430729.1| NADH-quinone oxidoreductase, E subunit [Moorella thermoacetica ATCC
39073]
gi|83573634|gb|ABC20186.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
Length = 159
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M RR E QP A + ++++RY + A+IP+L QE G++ A
Sbjct: 1 MGSRR----EVQPMP-------AETIKQIVARY--QEEKGALIPVLQATQEALGYLPPEA 47
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++ +A +D+ V + TFY QF L P G R + VC T C +RG +++ + +
Sbjct: 48 LKEIAAAMDLPLSTVYSVVTFYAQFHLQPRG-RHVIHVCQGTACHIRGGNRILNRIKELL 106
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
D + E V C GAC AP++ I DTY L P+ + I++ +
Sbjct: 107 QIDAGETTPDLRFTLEPVACLGACALAPVMSISGDTYGHLKPDMIAGILEKYQ 159
>gi|307266698|ref|ZP_07548226.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|326391449|ref|ZP_08212985.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
ethanolicus JW 200]
gi|306918300|gb|EFN48546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|325992528|gb|EGD50984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
ethanolicus JW 200]
Length = 160
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F +E + + ++I ++ AQE G++ ++ +++ +
Sbjct: 7 KFGKEKVERFKKALEE--LKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + +C T C +RG ++ + K+ + DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKINLCMGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ ++EI+ F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159
>gi|222099660|ref|YP_002534228.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
4359]
gi|221572050|gb|ACM22862.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
4359]
Length = 165
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE ++E I + + +I +L +AQE G++ +E +++ L++ +V +
Sbjct: 9 EELFKELDEFIEKNNYEGKKDVLIQVLHKAQELFGYLPADVLEFISDKLNVPLSKVYGVV 68
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G + ++VC T C ++G +++ E ++ P SDG S V
Sbjct: 69 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVSPDEPTSDGLFSVHGVR 127
Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
C GAC AP+VM+ D Y +TP+ + +II+ +
Sbjct: 128 CLGACSMAPVVMVDDSDFYGRVTPDMVPQIINKYR 162
>gi|92115244|ref|YP_575172.1| NADH-quinone oxidoreductase, E subunit [Chromohalobacter salexigens
DSM 3043]
gi|91798334|gb|ABE60473.1| NADH dehydrogenase subunit E [Chromohalobacter salexigens DSM 3043]
Length = 171
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
+F +E + YP Q+A I L Q + GWV AAI+ +A L
Sbjct: 11 PIATDAFVLHDEDRAAIAHERDHYP--HPQAASIEALKIVQRRHGWVPDAAIDAIARELG 68
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
++ V +ATFY+ PVG R + +C ++ C L E L + +
Sbjct: 69 VSPASVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTDYEALRDAFFEHLGIGFGQTTP 127
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG + V C GAC P +MIG DT+ + PE + +++A++
Sbjct: 128 DGRFTLLPVCCLGACDRGPALMIGDDTHGPVAPEEIPTLLEAYA 171
>gi|146307438|ref|YP_001187903.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
gi|145575639|gb|ABP85171.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
Length = 170
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
Q F+ SE + + Y R +A I L Q+ GWV A E + +L +
Sbjct: 11 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKARGWVPDGASEAIGEVLGI 68
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
V +ATFY+Q PVG R ++VC + C + G E ++ ++ +D
Sbjct: 69 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVLAEMHKQLGIGLGQTTAD 127
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V C G C AP +MI DT+ D+ P+ + +++A+
Sbjct: 128 NRFTLLPVCCLGNCDKAPALMIDDDTFGDVRPDGVAALLEAY 169
>gi|153807871|ref|ZP_01960539.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
gi|149129480|gb|EDM20694.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
Length = 158
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + ++ +I +L AQ +G++ ++A+ L + +V + TFYT
Sbjct: 12 EQIKTICDKH--GNNPGELINILHEAQHLQGYLPEEIQRIIASKLGIPVSKVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L P +++II+
Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEDL 157
>gi|259907930|ref|YP_002648286.1| NADH dehydrogenase subunit E [Erwinia pyrifoliae Ep1/96]
gi|224963552|emb|CAX55042.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae Ep1/96]
gi|283477811|emb|CAY73727.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae DSM 12163]
Length = 171
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 1 MSVRRLAEEEF-QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
M +R+A E + +F S + Y +R +A I L Q+Q GWV
Sbjct: 1 MHDQRIAIETIDESGAFVLSASERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + +
Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ KP +DG + C G C P +M+ +DT+ LTPE + +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171
>gi|160887579|ref|ZP_02068582.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
gi|260171117|ref|ZP_05757529.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
gi|156107990|gb|EDO09735.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
gi|295087524|emb|CBK69047.1| NADH dehydrogenase subunit E [Bacteroides xylanisolvens XB1A]
Length = 162
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ A + + ++ +I +L AQ +G++ ++A+ L + +V + T
Sbjct: 13 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F ++P G + + VC T C +RG EKL+E + + + DG S + + C
Sbjct: 71 FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+VMIG+ Y L P +++II+
Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161
>gi|311697063|gb|ADP99936.1| ATP synthase subunit E [marine bacterium HP15]
Length = 158
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++ A++P+L Q+ G++ +++ ++A L ++ V + +FY F
Sbjct: 2 IERIVEG--LKHKPGALLPILHSVQDHFGYIPESSVPIIAEKLQLSRAEVHGVISFYHHF 59
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ PVG R V VC C G L E + ++ +SD + E V C G C
Sbjct: 60 RSHPVGCR-VVHVCRAEACQAMGGRTLEEHIKARLGVDYHGTSSDNEFTLEPVYCLGNCA 118
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
AP + + D + +TP++ + ++D
Sbjct: 119 CAPSIRVNDDIHGRVTPQKFDRLVDEL 145
>gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
tengcongensis MB4]
gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
tengcongensis MB4]
Length = 169
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F ++ + I Y ++I ++ AQE G++ ++ + + +
Sbjct: 16 KFGKDKVEKFKKSIENYREI--PGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIF 73
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
I+TFY++F L P + + +C T C +RG L+E + K+ + DG S E
Sbjct: 74 GISTFYSRFTLKP-SGKYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLE 132
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP ++EI+ F
Sbjct: 133 PTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKF 168
>gi|304316575|ref|YP_003851720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778077|gb|ADL68636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 160
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F EE +VI ++I ++ AQE G++ + ++ +++ +
Sbjct: 7 KFDEEKVNKFKKVIDE--LKNVDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + +C T C ++G +++ + K+ SDG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ +++I+ F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKF 159
>gi|297544310|ref|YP_003676612.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842085|gb|ADH60601.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 160
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F EE + + ++I ++ AQE G++ ++ +++ +
Sbjct: 7 KFGEEKVERFKKALEE--LKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY++F L P + + +C T C +RG ++E + K+ + DG S E
Sbjct: 65 GIATFYSRFTLKP-SGKYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++MI + + LTP+ ++EI+ F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159
>gi|302391755|ref|YP_003827575.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
dehydrogenase diaphorase component iron-sulfur protein
[Acetohalobium arabaticum DSM 5501]
gi|302203832|gb|ADL12510.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
dehydrogenase diaphorase component iron-sulfur protein
[Acetohalobium arabaticum DSM 5501]
Length = 163
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + ++ Y + + +IP+L AQ++ G++ + + ++ LD+ + V +A
Sbjct: 13 EEYLQPLKGILKAY-AGKKED-LIPVLQAAQQEYGYLPQPVLREISKELDIFFSEVYGVA 70
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF L P G ++VC T C +RG +++++ + ++ D + E V
Sbjct: 71 TFYSQFHLEPRGE-NIIRVCMGTACHVRGGDEILDKVKAELGIDAGETTDDQKFTLESVA 129
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC AP++ + DT+ L P+++ +I+D +
Sbjct: 130 CIGACGLAPVMTVNDDTHGLLVPDKIPDILDQYR 163
>gi|288574745|ref|ZP_06393102.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570486|gb|EFC92043.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 156
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ E +E++S P +IP+L Q + G++ A++ V+ L + + +
Sbjct: 5 TTEVIARTSEIVS--PWKSKHGGLIPILQSIQGEFGYLPTEALKTVSKDLKIPEAEIYGV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY QF L+P G R V+VC T C +RG +K++++ + D + E V
Sbjct: 63 ATFYAQFHLNPRG-RHVVRVCRGTACHVRGSQKILDMVKEITGINENETTKDLRFTIEPV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++M+ T+ L P ++ EI++ F
Sbjct: 122 ACLGACGLAPVMMVDDQTFGRLEPSKVREILEKF 155
>gi|310827346|ref|YP_003959703.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
gi|308739080|gb|ADO36740.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
Length = 162
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ +++++S YP R S + ++ Q ++ ++ +A LD + +ATF
Sbjct: 5 TKESIDKILSAYPRDRRHS--LAMMQDMQHHFNYIPEQGMKALAEYLDCPLSSLYSMATF 62
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y L P G + +++C T C +RG LI + ++ P + DG S E V C
Sbjct: 63 YRALSLKPKG-KHIIKLCDGTACHIRGSVNLITGIKRELDISPGETSGDGLFSLETVNCL 121
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G+C AP+++I Y +T E+L EI++ +
Sbjct: 122 GSCALAPVMVIDGVYYGKVTLEKLPEILNQYRE 154
>gi|299146442|ref|ZP_07039510.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
gi|298516933|gb|EFI40814.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
Length = 162
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ A + + ++ +I +L AQ +G++ ++A+ L + +V + T
Sbjct: 13 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F + P G + + VC T C +RG EKL+E + + + DG S + + C
Sbjct: 71 FYTFFTMIPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+VMIG+ Y L P +++II+
Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161
>gi|116750129|ref|YP_846816.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699193|gb|ABK18381.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 151
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ + +R+ R + A+IP+L Q + G++ A++ A + + V ++TFY
Sbjct: 2 KDKLQRIFTRH--DRKRDALIPVLQDIQGEFGYLPPHAMQAAARHCRTSAVEVYGVSTFY 59
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF+ SPVG R V VC T C + G +++E C++++ +P DG + E V C G
Sbjct: 60 AQFKFSPVG-RHTVTVCQGTACHVMGGHRILEECKSQLGVQPGQTTPDGMFTLETVACIG 118
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
AC +P V++ KDTY + PER+ EI++A
Sbjct: 119 ACALSPAVVVDKDTYGRMKPERITEILNA 147
>gi|237737512|ref|ZP_04567993.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
gi|229419392|gb|EEO34439.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
Length = 165
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+S++I +L +AQE G++ E +A +++ +V + +FY F + P G + +
Sbjct: 27 KKSSLIIILHKAQEIFGYIPEEVQEFIAEKIEVPVSKVYGVVSFYNFFSMEPKG-KYPIS 85
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C +RG EK++E + ++ K DG S + + C GAC AP++++GKD +
Sbjct: 86 VCTGTACYVRGAEKILEALQKELGLKLGGVTEDGLFSLDSLRCVGACGLAPVMLVGKDVH 145
Query: 158 EDLTPERLEEIIDAFSTGQG 177
+ PE +++II+ + +
Sbjct: 146 GKVKPEDVKKIIENYKNLEK 165
>gi|189218229|ref|YP_001938871.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
infernorum V4]
gi|189185087|gb|ACD82272.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
infernorum V4]
Length = 171
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++IS+YP S +SA +PLL Q+ G+VSR +E +A L++ I V EIATFY
Sbjct: 16 IDEAEKIISQYPVS-KRSASLPLLHLWQKHFGYVSREGVEWIAQKLELEPIAVEEIATFY 74
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-----KPLHRNSDGTLSWEE 137
+ +VC T C L G +L + + + ++ + DG S E
Sbjct: 75 PMI-RHRPLGKYQFKVCRTLSCALAGSYQLFDYIKQNCNALQEVGHHVYLSEDGQFSVEF 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
VEC AC NAP++MI ++ + D+T E+++ I+
Sbjct: 134 VECLAACGNAPVMMINEEEWMDVTKEKIQGILAQLRK 170
>gi|268323920|emb|CBH37508.1| putative Fe-only hydrogenase [uncultured archaeon]
Length = 157
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V+E+I+ + ++A++ L Q G++++ AI + + LD+ + + + TFY
Sbjct: 7 KADVDEIIND--IGKSEAALLQCLEAVQRDVGYITQDAITYLRDELDVPSVEIYGVMTFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
G + ++VC + PC L G + +IE N++ K D + E V C G
Sbjct: 65 GMLTAEQQG-KYVIRVCNSLPCYLNGSKMIIETLENELGIKSGETAEDANFTLETVACLG 123
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C NAP ++I ++ Y +LT E+++EII A G
Sbjct: 124 LCDNAPAMIINREIYGNLTEEKVKEIIKA-KAGDD 157
>gi|281357848|ref|ZP_06244334.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
gi|281315795|gb|EFA99822.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
Length = 176
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 20 EESAIWVNEVISRYP--------PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
E +E + RY P R + ++I +L RAQ G++S VA L+++
Sbjct: 16 PEEQQKFDE-LERYIGTLQVGDNPDRRRGSLIQILHRAQHLFGYLSEEVQSFVAARLNIS 74
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V + +FY+ F + R + VC T C ++G K+++ + ++ + DG
Sbjct: 75 RAEVYGVISFYSYF-IDQPIGRYKINVCTGTACFVKGAPKVLDEFKRRLEIREGESTPDG 133
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ C GAC AP+VM+ + Y ++T E++ +I+ +
Sbjct: 134 KFFLGALRCVGACSLAPVVMVNEKVYGNVTAEKVADILQDCAD 176
>gi|302342221|ref|YP_003806750.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
2075]
gi|301638834|gb|ADK84156.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
2075]
Length = 154
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
++E+I RYP +I LL Q G++S A++ V + + R +ATFY
Sbjct: 7 QLDELIDRYPA--KPEYLIFLLQDIQAAYGYISPEAMDRVCDHAGVPKSRAYSVATFYQS 64
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G ++VC T C L+G ++L + K+ KP + D S E V C GAC
Sbjct: 65 FSLKPKGE-HKIRVCMGTACHLKGAQRLADAVERKLGIKPDETSPDLKFSLEAVHCLGAC 123
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP+V++ + + TP +L++++D +
Sbjct: 124 AMAPVVVVDDEYHAGATPGKLDKLLDNVARD 154
>gi|290475914|ref|YP_003468809.1| NADH dehydrogenase I subunit E [Xenorhabdus bovienii SS-2004]
gi|289175242|emb|CBJ82045.1| NADH dehydrogenase I chain E [Xenorhabdus bovienii SS-2004]
Length = 181
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
+F S + + Y R +A I L Q+Q GWV AI VA +L +
Sbjct: 26 AFVLSTAERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAVAEVLGIPASD 83
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+Q PVG R ++ C + C + G + + ++ +P DG +
Sbjct: 84 VEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEMHLNIRPGQTTEDGRFT 142
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C P +MI +DT+ + PE +E++++ +
Sbjct: 143 LLPTCCLGNCDKGPTMMIDEDTHSYVKPEEIEKLLEQY 180
>gi|304413374|ref|ZP_07394847.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
insecticola LSR1]
gi|304284217|gb|EFL92610.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
insecticola LSR1]
Length = 172
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 1 MSVRRLAEEEFQ--PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58
M+ ++ E PS F S E + + Y +R +A I L Q++ GWV
Sbjct: 1 MNDQKNHLEGMAITPSDFVLSAEEQAAIEQEKQHYEDAR--AATIEALKIVQKKRGWVPD 58
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
AI +A IL + V +ATFY+Q PVG R ++ C + C + G +++ V
Sbjct: 59 GAIYAIAEILAIPASDVEGVATFYSQIFRRPVG-RHVIRYCDSVVCYITGYQEIQTVLEK 117
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
K+ KP +DG + C G C P +MI +DT+ L PE +E +++ +
Sbjct: 118 KLSIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLKPEDIEPLLERY 171
>gi|206901474|ref|YP_002251394.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
H-6-12]
gi|206740577|gb|ACI19635.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
H-6-12]
Length = 153
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+++ +P R +I +L Q + +++ I+ A L + V +A+FY+
Sbjct: 5 QKILESFP--RDPDYIIEILHELQNRNPYNYLTPEDIKACAEYLGLPVSYVEGVASFYSM 62
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G R +++C + PC L G E L+E K++ K D + E C G C
Sbjct: 63 FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLEKKLNIKVGETTEDKLFTLELTSCLGVC 121
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP +MI + Y +LT E++++I++
Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEEKRGN 152
>gi|258513532|ref|YP_003189754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257777237|gb|ACV61131.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
Length = 165
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S E V+++I P S +I +L R QE G++ R VA L++ V
Sbjct: 10 QLSAELLSQVDKIIE--PSSGRSGNLIQVLHRVQELVGYLPREVQVRVAEGLNVPLSIVY 67
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY+ F + P G + + VC T C +RG ++LI ++++ K SDG S
Sbjct: 68 GVVSFYSFFNVLPKG-KHTINVCTGTACYVRGAKQLINNIQDQLDIKTGGTTSDGQFSLG 126
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V C GAC P+V I +D + + PE+++ I+ +
Sbjct: 127 MVRCVGACGLGPVVTINEDVHAQVRPEKIDGILAKY 162
>gi|37526974|ref|NP_930318.1| NADH dehydrogenase subunit E [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain
5) (NUO5) [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 182
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E + F S E + Y R +A I L Q+ GWV AI +A++L
Sbjct: 21 ESQAKADFVLSTEEHDAIEHEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V +ATFY+Q PVG R ++ C + C + G + + ++ P
Sbjct: 79 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ + PE +E++++ +
Sbjct: 138 KDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVRPEEIEKLLEQY 181
>gi|326790678|ref|YP_004308499.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
lentocellum DSM 5427]
gi|326541442|gb|ADZ83301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
lentocellum DSM 5427]
Length = 158
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 4/151 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+++++ R S++I +L QE ++ ++ L M+ ++ +ATFY
Sbjct: 9 ELDQILER--NGLEPSSIISILQDIQEIYRYIPEEIFPYLSEKLGMSTAKIYGVATFYEN 66
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGA 143
F L P G + +++C T C +R ++ R + + D + E V C GA
Sbjct: 67 FSLEPKG-KYVIKICDGTACHVRKSIPILNALRETLSLSEEKVTTDDLLFTVETVSCLGA 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP++ I Y +TPE+ + ++
Sbjct: 126 CGLAPVMTINDKVYGSMTPEKAKALLSELRE 156
>gi|257452668|ref|ZP_05617967.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
gi|257466529|ref|ZP_05630840.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917684|ref|ZP_07913924.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
25563]
gi|317059208|ref|ZP_07923693.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
gi|313684884|gb|EFS21719.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
gi|313691559|gb|EFS28394.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
25563]
Length = 160
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ EVI+ + A+IP+L +AQE G++ + ++ ++ R+ I TFY
Sbjct: 10 KKLEEVINE--VEEKEMAIIPILHKAQEIFGYLPEEVQQFISQKTNIPIGRIYGIVTFYN 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F +P G + + VC T C +RG +K+++ + ++ DG S + + C GA
Sbjct: 68 FFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGA 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C AP++MI D + L E+++EI+ + +
Sbjct: 127 CGLAPVMMIDSDVHGKLEKEQVKEILSFYRNQK 159
>gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
gi|89336165|dbj|BAE85760.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
Length = 160
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++++++ + R + A+IP+L AQ G++ I+ ++ L + +V + TFY
Sbjct: 13 EEQLDQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF+L+P+G R + VC T C +RG K++E K DG + E V C G
Sbjct: 71 AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ I + + L +++ I+ +
Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160
>gi|256827980|ref|YP_003156708.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
baculatum DSM 4028]
gi|256577156|gb|ACU88292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
baculatum DSM 4028]
Length = 175
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 13 PSSFS--------FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
P +F + + +I+ + + Q ++I +L Q+ G+ I +
Sbjct: 10 PKTFKKRSSPLSPLTPAQFAQADAIIAAHRDT--QGSLITVLRLCQDIVGYFPLELIRYI 67
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A+ ++ V + +FY+ F L P G R +++VC T C +RG ++++ + K
Sbjct: 68 ASGMNQPLSTVYGVISFYSLFSLKPKG-RHNIRVCTGTACYVRGVREVLDRVERRFGVKA 126
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G S E V C GAC AP++++ +DT+ +TP+ EI++ +
Sbjct: 127 GGTCESGRFSLEPVRCLGACGLAPVMVVDRDTHGGVTPDSACEILEGY 174
>gi|328953056|ref|YP_004370390.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453380|gb|AEB09209.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 151
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+N ++SRY + +IP+L Q+ ++ + ++VVA L++ R+ +ATF
Sbjct: 2 DLERLNGILSRY--DCQPADLIPVLQDIQDSYNYLPQDEMKVVAERLNIPLTRIFSVATF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F L+P G + +VC T C L+G ++L E +++ + D + E V C
Sbjct: 60 YKMFSLTPKG-KHICRVCLGTTCHLKGGQRLAESISHRLGVDIGYTTKDMRFTLETVGCL 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G+C AP++MI + +T +++ +I+ +
Sbjct: 119 GSCAQAPVMMIDDTYHARVTVDKVPKILKKYQK 151
>gi|150021054|ref|YP_001306408.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
gi|149793575|gb|ABR31023.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
Length = 160
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 5/158 (3%)
Query: 23 AIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78
+ ++IS R + +I L + Q+ + ++S A ++V+ L++ +V E+
Sbjct: 2 LSKIKDIISEAKNERLEEKDILIYTLHKIQDISENNFISEEAAKIVSEELNIPLSKVYEV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY+ F G + ++VC + PC + ++I++ + ++ +DG + EE
Sbjct: 62 LTFYSMFSTKKRG-KYLIRVCSSLPCHVANGREIIKILKEELKIDFNQTTADGMFTLEET 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G C +P++MI Y DLTPE+++E+I+ G+
Sbjct: 121 GCLGLCGVSPVIMINNKYYGDLTPEKVKELINKIKRGE 158
>gi|239905423|ref|YP_002952162.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
RS-1]
gi|239795287|dbj|BAH74276.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
RS-1]
Length = 168
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
LA + + F + ++ RY R + ++P+L QE+ ++ + + VA
Sbjct: 5 LAPALAETAKFE-------KLCGILDRY--DRHPARLVPILQALQEEYRYLPQEVLSYVA 55
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KP 124
L + V +ATFY F L P G + V++C T C ++ ++E R ++ +
Sbjct: 56 TSLRIPEANVFGVATFYAHFALEPKG-KYVVRLCDGTACHVKQSIPILEALRARLDLTEA 114
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
D + E V C GAC AP+++I +D Y +TPER ++IDA +
Sbjct: 115 KATTPDMLFTVETVACLGACGLAPVLVINEDVYGQMTPERAVDLIDAIRAKE 166
>gi|197120283|ref|YP_002140710.1| NADH dehydrogenase I subunit E [Geobacter bemidjiensis Bem]
gi|197089643|gb|ACH40914.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
Length = 169
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 10/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS A E P+ E N +I +Y ++P+L Q+ G++ R
Sbjct: 1 MS---NAPAEEIPAE----EIDLAEANHIIDKYLTL--PGNLMPVLQGIQDSYGYIPRPT 51
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I++VA L++ ++ + TFY QF L P G R ++VC T C ++G E++ E ++
Sbjct: 52 IDLVAERLNVYPSQIYGVLTFYAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRL 110
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
++D ++E+V C GAC AP+ M+ DTY +T ++++EII+ +
Sbjct: 111 GIGHAETSADLRYTFEKVACLGACGMAPLAMVNDDTYGKMTVQKVDEIIETY 162
>gi|331082242|ref|ZP_08331369.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403036|gb|EGG82601.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 159
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y R S++IP++ Q + ++ + VA + + +
Sbjct: 2 LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R ++E + ++ K H D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKQHTTDDMLFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
V C GAC AP + + + Y +TPE+ +I
Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELRGDN 158
>gi|258516936|ref|YP_003193158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257780641|gb|ACV64535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
Length = 222
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+++++ Y R + +I +L AQ+ G++ +A +D+ V + TFY
Sbjct: 43 YAELDKLLELY--GRERGELIRVLYGAQKIFGYLPPEVQAYIAAKMDIPISEVNGVVTFY 100
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
T F P G R V+VC T C ++G +++ + ++ DG + C G
Sbjct: 101 TLFVTEPRG-RHTVRVCTGTACYVKGAADIMDKFKQELKLDGRETGEDGLFTLTSTRCIG 159
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
AC AP++ + ++ Y +LT + + I++ + + + G
Sbjct: 160 ACGMAPVLTVDEEVYGNLTAKDVITILEKYRSD---PVAAGS 198
>gi|260588481|ref|ZP_05854394.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
gi|260540956|gb|EEX21525.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
Length = 159
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y R S++IP++ Q + ++ + VA + + +
Sbjct: 2 LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R ++E + ++ K H D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKKHTTDDMLFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
V C GAC AP + + + Y +TPE+ +I
Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELRGDN 158
>gi|253702591|ref|YP_003023780.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
gi|251777441|gb|ACT20022.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
Length = 168
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 10/172 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS A E P+ E N +I +Y ++P+L Q+ G++ R
Sbjct: 1 MS---NAPAEEIPAE----EIDLAEANHIIDKYLTL--PGNLMPVLQGIQDAYGYIPRPT 51
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I++VA L++ ++ + TFY QF L P G + ++VC T C ++G E++ E ++
Sbjct: 52 IDLVAERLNVYPSQIYGVLTFYAQFHLKPRG-KYIIRVCVGTACHVQGAERITETFFGRL 110
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
++D ++E+V C GAC AP+ M+ DTY +T ++++EII+ +
Sbjct: 111 GIGHAETSADLRYTFEKVACLGACGMAPLAMVNDDTYGKMTVQKVDEIIETY 162
>gi|224535654|ref|ZP_03676193.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522727|gb|EEF91832.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
DSM 14838]
Length = 158
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A L++ RV + TFYT
Sbjct: 12 EQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L ++++++
Sbjct: 129 CGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157
>gi|310828876|ref|YP_003961233.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
gi|308740610|gb|ADO38270.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
Length = 172
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
++ V+ Y ++I +L +AQE G++S + ++ D+ ++ +ATFY Q
Sbjct: 23 ELDAVLDAYADV--AGSLITILQKAQETYGYLSPDLMLYISRETDIPVAKIYGVATFYAQ 80
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F+++PVG + + +C T C + G + E + K DG + E V C G C
Sbjct: 81 FRMNPVG-KHLIMLCQGTACHVNGSSMIEEAVVEHLGIKEGETTEDGLFTLENVACLGCC 139
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+P++MI +TY LT +++ I+ +
Sbjct: 140 SLSPVMMIDGETYGQLTKDKVVNILTELKEQE 171
>gi|302336897|ref|YP_003802103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
smaragdinae DSM 11293]
gi|301634082|gb|ADK79509.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
smaragdinae DSM 11293]
Length = 169
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
++ Y R +IP+L + QE+ ++ + +A L+++ R+ IATFY+ F L
Sbjct: 19 RILDLY--DRDPGMIIPILQKVQEEYRYLPEEVLLFLATSLEISPARLYGIATFYSHFSL 76
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVN 146
P G + ++VC T C ++G LIE R+ + + SD + E V C GAC
Sbjct: 77 EPKG-KHVIKVCDGTACHVKGSGALIETLRSMLALEKGIKTTSDMLFTLETVSCLGACGL 135
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
AP+V+I + +TP+++ +I +
Sbjct: 136 APVVVIDDTVHGQMTPDKVRALITKIREEED 166
>gi|253989003|ref|YP_003040359.1| NADH dehydrogenase subunit E [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780453|emb|CAQ83615.1| nadh dehydrogenase i chain e (nadh-ubiquinone oxidoreductase chain
5 (nuo5) [Photorhabdus asymbiotica]
Length = 182
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
E ++F S E + + Y R +A I L Q+ GWV AI +A++L
Sbjct: 21 ESQAKANFVLSVEEHDAIEQEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V +ATFY+Q PVG R ++ C + C + G + + ++ P
Sbjct: 79 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + C G C P +MI DT+ + PE +E++++ +
Sbjct: 138 QDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVKPEEIEKLLEQY 181
>gi|168184521|ref|ZP_02619185.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum Bf]
gi|237795253|ref|YP_002862805.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum Ba4 str. 657]
gi|182672342|gb|EDT84303.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum Bf]
gi|229261562|gb|ACQ52595.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum Ba4
str. 657]
Length = 159
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 19 SEESAIWVNEVISRYPPS--RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S E + + +Y + + ++I +L +AQ G++ E VA LD+ +V
Sbjct: 3 SSELLNTKFKELEKYINNISNKKGSLIEVLHKAQHIFGYLPNDVQEFVAKKLDIPVSKVY 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F P G + VC T C ++G ++ K++ K DG + +
Sbjct: 63 GVITFYSYFTTEPKGE-NVINVCMGTACFVKGAGDILSEFEKKLNIKVGETTKDGKFTLQ 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP+V I Y T ++++++ +
Sbjct: 122 VLRCVGACGLAPVVTINDKVYGHFTKNEVDKVLEEY 157
>gi|148269833|ref|YP_001244293.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
RKU-1]
gi|170288519|ref|YP_001738757.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
gi|281412284|ref|YP_003346363.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
RKU-10]
gi|147735377|gb|ABQ46717.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
RKU-1]
gi|170176022|gb|ACB09074.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
gi|281373387|gb|ADA66949.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
RKU-10]
Length = 157
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 23 AIWVNEVISRYPP-SRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80
+ E++ + + + +I L Q++ ++ A E+VA L + RV E+ T
Sbjct: 2 REVIVEIVQKAKETAEERDVLINTLHEIQKRFDNFIPPEAAEIVAEELGVPLSRVYEVLT 61
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F P G + ++VC + PC + ++++ + + SDG + E C
Sbjct: 62 FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKEILKIDFGQTTSDGLFTLEMTSC 120
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
G C AP++M+ + Y ++TP R++++ID
Sbjct: 121 LGLCGVAPVIMVNDEYYGNMTPGRVKDLIDRLR 153
>gi|171463530|ref|YP_001797643.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193068|gb|ACB44029.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 167
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
++ S+++ ++ I++YPP QSAV+ L+ AQ + GWVS IE VA IL+M
Sbjct: 2 TTTLQLSDKTMADIHRNIAKYPPEHKQSAVMACLIAAQIEVGWVSPEVIETVAQILEMPS 61
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
I V E+ATFY + P+G + + +C PC L + + + GT
Sbjct: 62 IAVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHG-ETAAYLKETLGIDYNETTPCGT 119
Query: 133 LSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
+ +E EC GAC ++P++++ ++ E+++ +++
Sbjct: 120 FTLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLNELRA 162
>gi|326204153|ref|ZP_08194013.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325985664|gb|EGD46500.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 163
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIAT 80
V E+++RY + +I +++ Q G + + VA LDM RV + T
Sbjct: 8 MEKVKEILNRY--GNSKDNLIQVMLELQNISGTNSLPHDWVVFVAEALDMPVSRVYSVIT 65
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+ F P G + V+VC + PC + G + ++++ K+ KP DG + + C
Sbjct: 66 FYSMFGNEPRG-KYLVEVCKSGPCHVSGAKTVLQLIEEKLGLKPGETTEDGVFTLIQSSC 124
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP + IG+ Y +LT E+L EI+D++ GQ
Sbjct: 125 FGACDIAPAIKIGEKVYGNLTAEKLTEIVDSYREGQ 160
>gi|189467140|ref|ZP_03015925.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
17393]
gi|189435404|gb|EDV04389.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
17393]
Length = 158
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A L++ RV + TFYT
Sbjct: 12 EQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L ++++++
Sbjct: 129 CGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157
>gi|219667453|ref|YP_002457888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
hafniense DCB-2]
gi|219537713|gb|ACL19452.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
hafniense DCB-2]
Length = 160
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++++ + R + A+IP+L AQ G++ I+ ++ L + +V + TFY
Sbjct: 13 EEQLEQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF+L+P+G R + VC T C +RG K++E K DG + E V C G
Sbjct: 71 AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC AP++ I + + L +++ I+ +
Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160
>gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 114
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA++L + +IRV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+
Sbjct: 1 MRYVADMLHIPHIRVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKL 59
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
D + +EVEC GACVNAP+V I D YE+LTPE++E II
Sbjct: 60 GINIGETTKDNLFTLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITEL 111
>gi|217077617|ref|YP_002335335.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
gi|217037472|gb|ACJ75994.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
Length = 162
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 23 AIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78
+ +++ R Q +I +L + QE + ++ A EVV+ L + ++ E+
Sbjct: 4 KEEIKKIVHEAKNERLEEQDILIYILHKIQEKIENNYIPEYAAEVVSEELKIPTSKIYEV 63
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY+ F G + ++VC + PC + ++I + ++ SDG + EE
Sbjct: 64 LTFYSMFSTKKRG-KYVIRVCTSLPCHVANGREIINTLKEELKIDFNQTTSDGLFTLEES 122
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G C +P++MI + Y DLTP+++ EII+ G+
Sbjct: 123 GCLGLCGVSPVIMINNEYYGDLTPQKVREIINNLKGGE 160
>gi|255505333|ref|ZP_05345528.3| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
14469]
gi|255268421|gb|EET61626.1| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
14469]
Length = 172
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY
Sbjct: 19 YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPGELLTYVAGQIGITEAKAFSVATFY 76
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141
F P G + ++VC T C +R ++E + ++ H D + E V C
Sbjct: 77 ENFSFEPKG-KYIIKVCDGTACHVRKSAPILEAFQKELGLSAKKHTTDDMLFTVETVSCL 135
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP VM+ +D + +TPE+ ++I Q
Sbjct: 136 GACGLAPTVMVNEDVHPKMTPEKAIDLIRELRGDQ 170
>gi|282891846|ref|ZP_06300326.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498279|gb|EFB40618.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 171
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE+ + E+ RYP +SA+IP L AQ + G++ R VA + D+ V
Sbjct: 2 LTEETRKSIIELQKRYPN--KRSALIPALHLAQAEIGYLPRDIQNEVAELFDIDSNEVNA 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F PVG + + VC CMLRG + +++ ++++ +P +DG +
Sbjct: 60 VVTFYDMFFDQPVG-KHLIHVCKNLSCMLRGADGVLKKICHRLNVEPHETTADGEFTVIP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
EC AC APMV++ ++ + +E I++ G
Sbjct: 119 SECLAACDRAPMVLVDDKVVGPISEQDVEHILEEAKKSPGHP 160
>gi|237722432|ref|ZP_04552913.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
gi|229448242|gb|EEO54033.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
Length = 158
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A+ L++ +V + TFYT
Sbjct: 12 EQVRTICDKH--GNNPGELINILHEAQHLHGYLPEEMQRIIASKLNIPVSKVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L P +++II+
Sbjct: 129 CGLAPVVMIGEKVYGRLQPIDVKKIIEEL 157
>gi|166032052|ref|ZP_02234881.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
27755]
gi|166027775|gb|EDR46532.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
27755]
Length = 162
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F +E+I+ + +R + ++IP++ QE+ ++ + VA + ++ +
Sbjct: 5 FMLDASYYEKTDEIIACH--TREERSLIPIIQDIQEEYRYLPPELLSYVAGKIGISEAKA 62
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLS 134
+A+FY F G + ++VC T C +R ++E ++ K H D +
Sbjct: 63 FSVASFYENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLNKDKHTTDDQLFT 121
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
E V C GAC AP VMI + Y +TPE++ E+I
Sbjct: 122 VETVSCLGACGLAPAVMINDEVYGKMTPEKMSELIKKLRE 161
>gi|256422832|ref|YP_003123485.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
2588]
gi|256037740|gb|ACU61284.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
2588]
Length = 154
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S ++ I P ++ VI L Q+ GW+S ++E +A+ L ++ V
Sbjct: 2 LSTTEKEAIDHEIGLVP--HKRATVIEALKIVQQHRGWISDDSVEEIAHYLGISPAEVDS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY PVG R + +C + C + G + L + K+ D +
Sbjct: 60 VATFYNLIFRKPVG-RHVILLCDSISCYVMGYKSLYAALQRKLQISFGQTCPDNRFTLLP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C +AP +MI KD Y D+T E+L++I+ ++
Sbjct: 119 NACLGCCDHAPAMMIDKDLYRDITIEQLDDILKKYA 154
>gi|253577814|ref|ZP_04855086.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
gi|251850132|gb|EES78090.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
Length = 159
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y R +++IP++ Q + ++ + VA + + +
Sbjct: 2 LDQSYYRKADEIIEHY--GRTAASLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R + E ++ H D + E
Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP + + + + +TPE+ E+++
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAVELLNKLR 155
>gi|323702551|ref|ZP_08114214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323532525|gb|EGB22401.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 161
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+++ + E++++Y A+IP+L +AQE G++ I+ +A L + RV +
Sbjct: 10 NQDKQKSLAELLTKYKE--QPGALIPVLQQAQEIFGYLGPEVIDQIAGELKIPPARVYGV 67
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY QF L P G R ++VC T C +RG K++E + + +P + D + E V
Sbjct: 68 ATFYAQFHLQPRG-RHVIKVCQGTACHVRGGAKVLEAIKKQTGLEPGETSKDLRYTLETV 126
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++M+ +DT L+PE+ + I
Sbjct: 127 ACLGACGLAPVMMVNEDTQGQLSPEKAVKKIAQC 160
>gi|217968067|ref|YP_002353573.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
6724]
gi|217337166|gb|ACK42959.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
6724]
Length = 153
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
E++ +P R +I +L Q +++ I+ A L++ V +A+FY+
Sbjct: 5 QEILESFP--RDPDYIIEILHELQNNNPYNYLTPEDIKACAEYLELPVSYVEGVASFYSM 62
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G R +++C + PC L G E L+E K++ K D + E C G C
Sbjct: 63 FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLERKLNIKVGETTEDRVFTLEVTSCLGVC 121
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP +MI + Y +LT E++++I++
Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEEKRGN 152
>gi|189426183|ref|YP_001953360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
SZ]
gi|189422442|gb|ACD96840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
SZ]
Length = 171
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
EVI +Y ++P+L Q+ G+V R ++ VA L++ ++ + TF
Sbjct: 19 DLALAEEVIQKYKDI--PGNLMPVLQGIQDAYGYVPRITVDYVAERLNVYPSQIYGVLTF 76
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G + ++VC T C + G E++ E ++I D ++E V C
Sbjct: 77 YAQFHLKPRG-KFIIRVCMGTACHVLGAERIKESFYDRIGIGHAETTPDRRFTFELVACL 135
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
GAC AP+ M+ +TY +T ++++EII +S+
Sbjct: 136 GACGMAPLAMVNDETYGKMTVQKVDEIIKEYSS 168
>gi|158320024|ref|YP_001512531.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
gi|158140223|gb|ABW18535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
Length = 158
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + +++++ +Y S++I +L Q ++ A++ VA +DM+ R+
Sbjct: 2 LTVDMKDRIDQILMKY--GNNPSSIITMLQEIQGVYRYLPEEALDYVAASMDMSASRIFG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSDGTLSWE 136
IATFY F L P G + +++C T C +R ++ ++ +H D + E
Sbjct: 60 IATFYENFSLKPKG-KFIIKICDGTACHVRKSIPILNTLYKELSLNSEMHTTEDLMFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C GAC AP++ + Y +TPE E+++
Sbjct: 119 TVSCLGACGLAPVITVNDKVYGKMTPESTVELLNTLRE 156
>gi|153812807|ref|ZP_01965475.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
gi|149831167|gb|EDM86256.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
Length = 159
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y +++IP++ Q + ++ + VA+ + + +
Sbjct: 2 LDQSYYAKTDEIIEHY--GPKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R + E ++ H D + E
Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP + + + + +TPE+ ++++
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIDLLNELR 155
>gi|291546306|emb|CBL19414.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
SR1/5]
Length = 159
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+E+I Y R +++IP++ Q + ++ + VA + + + +ATFY
Sbjct: 9 KTDEIIEHY--GRKAASLIPIMQDIQAEYRYLPGELLTYVAEQIGVKEAKAYSVATFYEN 66
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGA 143
F P G + ++VC T C +R + E ++ H D + E V C GA
Sbjct: 67 FSFEPKG-KYIIKVCDGTACHVRKSMPVKEAMLKELGLSHKKHTTDDMMFTVETVSCLGA 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C AP + + + + +TPE+ E+++
Sbjct: 126 CGLAPTLTVNDEVHPKMTPEKAVELLNELR 155
>gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis]
gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis]
Length = 190
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F++E+ V +++ YP + Q A++PLL AQ Q GW+ +A+ VA +L + ++
Sbjct: 43 KFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKIDPMQ 102
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E A +YT F + P G V VC +TPC LRG + L++ C + +P + D S
Sbjct: 103 AYETAKYYTMFHMKPRG-MYVVSVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKDMQFS 161
Query: 135 WEEVECQGACV 145
+ C GAC
Sbjct: 162 LKVDCCLGACC 172
>gi|281358698|ref|ZP_06245175.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
gi|281314824|gb|EFA98860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
Length = 170
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
VN+++ +Y +S +IP+L Q ++S+ I VA + + RV +ATFY
Sbjct: 15 LAAVNKILEKY--DYSESKLIPILQEVQAVYKYLSKDMISYVATSIGVPPSRVYGVATFY 72
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQ 141
F + P G + +++C T C ++ ++ K+ + D + E V C
Sbjct: 73 AHFSMQPKG-KYIIKLCDGTACHVKKSHGILNALYEKLKLSGDKRTSDDQLFTIETVSCL 131
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
GAC AP++++ ++ Y TPE+ EI+D +
Sbjct: 132 GACGLAPVMVVNEEVYGQCTPEKAIEIVDRIIAEEK 167
>gi|301060599|ref|ZP_07201434.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
gi|300445302|gb|EFK09232.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
Length = 158
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+I +Y S+ + A+IPLL Q+ G+V A+++VA L + + + + TFYTQF
Sbjct: 9 RTLIEKY--SQKKGALIPLLQEIQDAYGYVPDDAVQLVAQELAIFPVEIYGVLTFYTQFY 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L+P G + ++VC T C + G + L + K+ + DG + E V C G C
Sbjct: 67 LTPRG-KHTIRVCQGTACHVMGAKGLFDYLLEKLEVEEGETTKDGFFTVERVACLGCCGM 125
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
AP++MI D Y T + +EE + + +
Sbjct: 126 APVIMIDDDFYGRCTIQNIEETWNKYRS 153
>gi|160881919|ref|YP_001560887.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
phytofermentans ISDg]
gi|160430585|gb|ABX44148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
phytofermentans ISDg]
Length = 164
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS ++ F+ ++E + VI + A++P+L +AQE G++
Sbjct: 1 MSSQKST------VPFAGTKEQEAELISVIEELKSDK--GALMPILQKAQEIYGYLPIEV 52
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+++N LD+ ++ + TFY+QF L P G + + VC T C ++G + K+
Sbjct: 53 QTIISNTLDIPLEKIYGVVTFYSQFSLLPKG-KFKISVCLGTACYVKGSGDIYNKLMEKL 111
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
DG S E C GAC AP++ + D Y L+ + L+ I+ ++
Sbjct: 112 GIASGECTPDGKFSLEACRCIGACGLAPVLTVNDDVYGRLSVDDLDGILAKYA 164
>gi|312878985|ref|ZP_07738785.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
gi|310782276|gb|EFQ22674.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
Length = 155
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE E+++ P + +IP+L AQ G++ A++ ++ L + + +
Sbjct: 5 EEVVSRTREIVA--PWKGRKGGLIPILQGAQNAFGYLPAEALQTISEELTVPLAEIYGVV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF L P G R ++VC T C +RG KL++ + + + D + E V
Sbjct: 63 TFYAQFHLKPRG-RHIIRVCRGTACHVRGSLKLLQTVKESLKVEENGTTEDLRYTLEPVA 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++M+ DT+ L PE+L+EI+D +
Sbjct: 122 CIGACGLAPVIMVDSDTHGRLVPEKLKEILDHY 154
>gi|303246232|ref|ZP_07332512.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
gi|302492295|gb|EFL52167.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
Length = 168
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ ++ Y R + ++P+L QE+ ++ + VA L + V +ATFY
Sbjct: 16 QKLCGILDHY--GRHPARLVPILQALQEEYRYLPEEVLSYVATSLRIPEANVFGVATFYA 73
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQG 142
F L+P G + V++C T C ++ ++E R ++ + D + E V C G
Sbjct: 74 HFALTPKG-KYIVRLCDGTACHVKHSIPILEALRGRLSLSEEKTTTPDMLFTVETVACLG 132
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AC AP+++I +D Y +TP+R +ID+ +
Sbjct: 133 ACGLAPVMVINEDVYGQMTPQRAVSLIDSIRAKE 166
>gi|291530734|emb|CBK96319.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
70/3]
Length = 143
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
Q A++P+L +AQE G++ ++A + + +V ++TFY+QF L P G + +
Sbjct: 8 QQGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKIS 66
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G + K+ DG S + C GAC AP++ + D Y
Sbjct: 67 VCLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVY 126
Query: 158 EDLTPERLEEIIDAF 172
LT + ++ I+ +
Sbjct: 127 GKLTVDEIDGILAKY 141
>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
[Heliobacterium modesticaldum Ice1]
gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
[Heliobacterium modesticaldum Ice1]
Length = 906
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
E ++EVI RY S +I LL +AQE G++ A +A +D+ V + +
Sbjct: 15 EKMRLLDEVIDRYKDS--PGQLIRLLHKAQEIFGYLPEAVQCHIAERMDLPVSEVAGVVS 72
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+ F P G + V VC T C ++G +++ + ++ +DG + + C
Sbjct: 73 FYSLFSRQPKG-KHTVSVCMGTACYVKGAPEVLTAIKKELSIDLGQTTADGMFTLTDTRC 131
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
GAC AP ++I + + + + ++D + + + P
Sbjct: 132 VGACGLAPAIVIDGEVHGRMKAADVPALLDGYRNRKDEQNVP 173
Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ +C T C +L +++ D C G C P
Sbjct: 304 QPSIPHQILLCAGTGCTSSRSAELRRALHSELT----RCGLDKEAHVVPTGCFGFCELGP 359
Query: 149 MVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+V+I + Y + P+ +EI++ +G+ I
Sbjct: 360 VVVIHPERIFYCQVAPDDAKEIVERHIA-KGEIIER 394
>gi|77918445|ref|YP_356260.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
carbinolicus DSM 2380]
gi|77544528|gb|ABA88090.1| formate dehydrogenase gamma subunit [Pelobacter carbinolicus DSM
2380]
Length = 163
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E++ Y A+IP+L AQ+ G++ +E ++ L + + V + TFY+QF L
Sbjct: 21 ELLEHYRE--YDGALIPVLQGAQDIYGYLPGEVLETISKELKIPFSEVFGVVTFYSQFHL 78
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P G R ++VC T C +RG K+ E + + D + E V C GAC A
Sbjct: 79 KPRG-RNIIRVCLGTACHVRGGSKIFEGLKEILGVDNGGTTEDLRFTLESVACIGACGLA 137
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
P++MI DT+ LT + L++I++ +
Sbjct: 138 PVIMINDDTHGRLTNDGLDKILEQY 162
>gi|154249677|ref|YP_001410502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
nodosum Rt17-B1]
gi|154153613|gb|ABS60845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
nodosum Rt17-B1]
Length = 164
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E ++ I + +I +L +AQE GW+ + E VA L + V +
Sbjct: 8 KELYEELDAYIDQ--VKDKPGILIGVLHKAQELFGWLPQEVQEHVAERLGVPISEVYGVV 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G + ++VC T C ++G ++++E ++ K DG S V
Sbjct: 66 TFYNFFATKPKG-KNQIKVCLGTACYVKGADRVMERFLEELGVKAEEVTEDGLFSVHPVR 124
Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTG 175
C GAC AP+V++G KD Y +TP+ + +II A+ G
Sbjct: 125 CLGACSMAPVVLVGEKDFYGKVTPDMVSKIIAAYRRG 161
>gi|225572044|ref|ZP_03780908.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
10507]
gi|225040479|gb|EEG50725.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
10507]
Length = 168
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I Y R +S++IP++ Q + ++ + VA + + +
Sbjct: 11 LDQSYYKKADEIIEEY--GRKESSLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYS 68
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R + E ++ H D + E
Sbjct: 69 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSHKKHTTDDMMFTVE 127
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
V C GAC AP + + + ++PE+ E+++ +
Sbjct: 128 TVSCLGACGLAPALNVNDVVHPKMSPEKALEMLEELRGEKK 168
>gi|149374624|ref|ZP_01892398.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
DG893]
gi|149361327|gb|EDM49777.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
DG893]
Length = 171
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 3/172 (1%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ + F + E ++ Y + Q+A I L Q + GWV A
Sbjct: 2 MATTPQTHQIIGTDGFELHPADETAMLEEMAHY--EQPQAACIEALKVVQRRHGWVPDGA 59
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A +L + V +ATFY+ PVG R V VC ++ C L G ++L + + +
Sbjct: 60 IGAIAKVLGIGPASVEGVATFYSLIFRQPVG-RHVVLVCDSSSCFLSGFDELKQALASHL 118
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + V C GAC AP +MI DTY ++P+ L +++ +
Sbjct: 119 GIDYGQTTEDGRFTLLPVCCLGACDGAPALMIDNDTYGPVSPDDLPGLLEGY 170
>gi|158319964|ref|YP_001512471.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
gi|158140163|gb|ABW18475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
Length = 166
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A+IP L + Q G++ A+ +V+ LD+ ++ +A+FY+ F L P G + V
Sbjct: 32 EGALIPALHKIQSIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQ-HVISV 90
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C T C ++G + ++E ++++ + + DG + + C GAC AP++MI + Y
Sbjct: 91 CLGTACYVKGSQNILERLSSELNIQEGNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYG 150
Query: 159 DLTPERLEEIIDAF 172
LTP + +I+ +
Sbjct: 151 RLTPSDVPKILSEY 164
>gi|187779550|ref|ZP_02996023.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
15579]
gi|187773175|gb|EDU36977.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
15579]
Length = 159
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+
Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + VC T C ++G ++ K++ K DG + + + C GA
Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y T ++++++ +
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEY 157
>gi|168180427|ref|ZP_02615091.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum NCTC 2916]
gi|170756016|ref|YP_001781397.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum B1 str. Okra]
gi|170758313|ref|YP_001787174.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A3 str. Loch Maree]
gi|169121228|gb|ACA45064.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B1
str. Okra]
gi|169405302|gb|ACA53713.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A3
str. Loch Maree]
gi|182668883|gb|EDT80861.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum NCTC 2916]
Length = 159
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+
Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + VC T C ++G ++ K++ K DG + + + C GA
Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y T ++++++ +
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEY 157
>gi|167752243|ref|ZP_02424370.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
gi|167660484|gb|EDS04614.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
Length = 164
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
S+ + V +Y +I +L Q+ G++ + E++A L ++
Sbjct: 2 EKICLSQRRIDEIKNVCRKY--GNDPGELINILHGVQDTLGYLPKEVQELIALELGISAA 59
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
RV + +FY+ F + P G + + VC T C +RG EK+++ R ++ + DG
Sbjct: 60 RVYGVVSFYSFFTMKPKG-KYPISVCMGTACYVRGGEKVLDEFRRQLGIEVGGTTPDGLF 118
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
S + + C GAC AP+VMIG Y L ++ I+D + +
Sbjct: 119 SLDSLRCVGACGLAPVVMIGPRVYGRLKVTDVKGILDEIQALEKEI 164
>gi|158321274|ref|YP_001513781.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
gi|158141473|gb|ABW19785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
oremlandii OhILAs]
Length = 157
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+E+ + EVI + ++ ++P+L AQ+ G +S + ++ + + +
Sbjct: 6 LSKENFEKLYEVIKEHKDTK--GPLMPVLHEAQKIFGCISLEVQKEISGKMSVPLSEIYG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY+QF L P G + H+ VC T C +RG + +I+ + +SDG S E
Sbjct: 64 VVTFYSQFTLEPKG-KYHIGVCLGTACYVRGSQAIIDKVTELTGVEIGKTSSDGRFSLEA 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++ + + Y LT + I++ +
Sbjct: 123 TRCIGACGLAPVLSVNDEVYGRLTANDIAGILEKY 157
>gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehydrogenase I chain E [Candidatus
Kuenenia stuttgartiensis]
Length = 154
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E + E + P ++A I L Q+ GWVS ++ +A L++ V
Sbjct: 2 LSVEEQKDLEEELKIVP--YKKAATIEALKIVQKHRGWVSDDGVKDIAEFLEITPDEVDS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY VG + + VC + C + G ++++ K+ K SDG +
Sbjct: 60 VATFYNLIFRRKVG-KHVILVCDSVSCWILGYNQILDYLNKKLGIKFGETTSDGKFTLLP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C +AP +MI D Y DLT + L+ I++ +
Sbjct: 119 ISCLGTCDHAPALMIDNDLYRDLTTDLLDPILEKY 153
>gi|222099433|ref|YP_002534001.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
4359]
gi|221571823|gb|ACM22635.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
4359]
Length = 170
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 23 AIWVNEVISRYPP-SRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80
+ E+I + + + +I L Q++ ++ A E+V+ L++ +V E+ T
Sbjct: 15 REAIVEIIRKAKESAEERDILINTLHEIQKRFENFIPPEAAEIVSEELNVPLSKVYEVLT 74
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FYT F P G + ++VC + PC + ++++ + + D + E C
Sbjct: 75 FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKETLKIDFGQTTPDNMFTLEMTSC 133
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
G C AP++M+ + Y ++TPE+++ +I+ +
Sbjct: 134 LGLCGVAPVIMVNDEYYGNMTPEKVKNLINRLRGEEK 170
>gi|304311498|ref|YP_003811096.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
gi|301797231|emb|CBL45451.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
Length = 167
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+ + + E + + Y R +A I L Q + GWV AI +A IL +
Sbjct: 11 APYEMAAEDRAEIEHSLHHYDDPR--AASIDALKVIQRRHGWVPNNAIREIALILQIPDS 68
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY + SPVG R + VC + C L G E++ + ++ KP SD
Sbjct: 69 DVEGVATFYNRIYRSPVG-RHVITVCDSIGCFLTGFEEVYAALQQRLGIKPGQTTSDNRF 127
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C GAC P++MI DTY +LT ++L+ +++ ++
Sbjct: 128 TLIPTCCLGACDRGPVLMINDDTYFNLTVDQLDALLEKYA 167
>gi|239616591|ref|YP_002939913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
gi|239505422|gb|ACR78909.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
Length = 167
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 42 VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+I L Q+ G ++ A E + +I+ + ++ E+ TFYT F G + ++VC
Sbjct: 28 LINTLHAIQDYYGNYIPLEATEALRDIMGIPLSKIYEVLTFYTMFSTEKRG-KYIIRVCK 86
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
+ PC + G EK++E ++ + + DG + EE C G C +P++MI + Y +L
Sbjct: 87 SLPCHVTGGEKVVEALKDTLGIDFGNTTEDGLFTLEESSCLGLCGVSPVMMINDEAYGNL 146
Query: 161 TPERLEEIIDAFSTGQ 176
TP+++E+II+ +
Sbjct: 147 TPDKVEKIINEIREKE 162
>gi|167761073|ref|ZP_02433200.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
gi|167661307|gb|EDS05437.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
Length = 161
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E S + +I Y S+ + + ++ Q +V R +E +A L + +A
Sbjct: 6 EVSKESIERIIHSYECSQRYA--LAIMQDMQRTYQYVPREGLEALAEYLGCPVSALYAMA 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY L P G ++ C T C +RG LI+ ++ +P DG S+E V
Sbjct: 64 TFYKALSLVPKGE-HTIKCCDGTACHIRGASTLIDGIERELGIRPGETTKDGLFSFETVN 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C G+C AP++++ Y +T E+L EII+ G
Sbjct: 123 CLGSCALAPVLVVDDVYYGKVTLEKLREIIEDVRKG 158
>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
Length = 846
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E +N++IS+Y S +I +L +AQE G++ + +A+ + + V +
Sbjct: 6 SMERLDDLNKIISQYKDS--PGQLIRILQKAQELYGYLPEDILGYIADKVGLPLSEVAGV 63
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY+ F P G + + VC T C ++G ++E + ++ +DG +
Sbjct: 64 VTFYSLFTTKPKG-KHTISVCLGTACYVKGAPNVLEAIKKELAVDMDQTTADGLFTLTNT 122
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT 198
C GAC AP V+I + + + + E+I + Q ++ G
Sbjct: 123 RCVGACGLAPAVLIDGEVHGRVKASDVPELIRQYRQRD--------QEGGTTTEADTGTN 174
Query: 199 SLLDN 203
++ D
Sbjct: 175 TVTDK 179
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + + PPS+ + + P+L + ++ S A + D V + A
Sbjct: 178 DKTDSLKNHLPPSQAEPIIGPVLSLQRLEQIRHSYAVRYIQRMHPDQVPDWVFQKADHTL 237
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ R + VC T C ++ R ++ + + DG ++ C G
Sbjct: 238 AAVPAAKSYRHQILVCAGTGCTSSRSAEIQSTLRRELQAQ----SLDGEIAVVHTGCFGF 293
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIID 170
C P++++ + Y +TP + EI++
Sbjct: 294 CELGPILVVHPERVFYCQVTPNDVPEIVE 322
>gi|168700383|ref|ZP_02732660.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246]
Length = 160
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ SE+ + I +YP R Q+ +P L ++ VS AI +A IL++ V
Sbjct: 3 ALSEDMKNRIRAFIPKYP--RKQAVTLPALHLVHDELRTVSNEAIVEIAEILELHPSEVH 60
Query: 77 EIATFYTQFQLS-PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ TFY F+ + VC CMLRG +LIE C +K+ +DG ++
Sbjct: 61 DTMTFYAFFKGEGEKLGTTRLWVCRGLACMLRGAYELIEHCEHKLGVHCGQTTADGKVTL 120
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E EC GAC AP +I ++TPE+ +++I
Sbjct: 121 EFAECIGACDGAPACLIEDVHAMNVTPEKADQLITELK 158
>gi|323703025|ref|ZP_08114681.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323532038|gb|EGB21921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 176
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P S S E+ +++++++Y + A I +L + Q G++ ++ +E ++ +
Sbjct: 4 PDSLKLSAENFDAIDQIVNKYNSDK--GAAIMILQQVQATYGYIGQSMLERISQLTGTPT 61
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ I TFY+QF+L P+G +QVC T C L G E++ E ++ KP H + DG
Sbjct: 62 SELFSIVTFYSQFRLEPLGE-NFIQVCHGTACHLAGAERISEAVQHVTKAKPGHTSPDGK 120
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ E V C G C + P++ + +T+ +TP+++++++ +G
Sbjct: 121 FTLEHVACLGCCSHGPIMTLNNETFARMTPDKVKKMLHQKVADKG 165
>gi|257463176|ref|ZP_05627576.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
sp. D12]
gi|317060767|ref|ZP_07925252.1| NADH dehydrogenase [Fusobacterium sp. D12]
gi|313686443|gb|EFS23278.1| NADH dehydrogenase [Fusobacterium sp. D12]
Length = 160
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I + A+IP+L +AQE G++ + +A +++ R+ I TFY
Sbjct: 10 KKLEEAIDE--VEDKEMAIIPILHKAQEIFGYLPEEVQQFIAEKMEIPIGRIYGIVTFYN 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F +P G + + VC T C +RG +K+++ + ++ DG S + + C GA
Sbjct: 68 FFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGA 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C AP++MI D + L E++ EI+ + +
Sbjct: 127 CGLAPVMMIDSDVHGKLEKEQVAEILSFYRNQE 159
>gi|300853891|ref|YP_003778875.1| NADH dehydrogenase I subunit E [Clostridium ljungdahlii DSM 13528]
gi|300434006|gb|ADK13773.1| NADH dehydrogenase I, E subunit [Clostridium ljungdahlii DSM 13528]
Length = 161
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+VI +YP + Q + +L Q + ++ R A+E +A LD R+ +ATFY
Sbjct: 13 QDVIEKYP--KEQRFTLAILQDIQRKYKYIPREALENLAKYLDTPVSRLYGMATFYKALS 70
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L+P G + VC T C + G +++ I KP D S V C G C
Sbjct: 71 LTPKGE-NIITVCDGTACHVAGSMVVMDELEKAIGIKPGETTEDLKFSINTVNCIGCCAI 129
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
AP++MI Y +LTP+ +EEI+ + + +
Sbjct: 130 APVMMINDKYYGNLTPKLVEEILSEYRSESDE 161
>gi|218780401|ref|YP_002431719.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218761785|gb|ACL04251.1| NADH-quinone oxidoreductase, E subunit-like protein (NuoE)
[Desulfatibacillum alkenivorans AK-01]
Length = 161
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +I Y + +IPLL QE+ G+V +IE +A L++ V + TFY
Sbjct: 10 KLRGIIGEYKDVKW--GLIPLLQAVQEEFGYVPPESIEPIAEALNIPPSEVQGVVTFYAG 67
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G + ++VC T C ++G + ++ + +H + + D S E V C GAC
Sbjct: 68 FSLKPKG-KYVLRVCRGTACHVKGGQSILSSVKKHLHLEEGETSEDFQFSLETVACLGAC 126
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
AP +M+ + + L+P+++ +I + +GD
Sbjct: 127 FVAPAMMVNRTYFGKLSPDKVNNVIGQYEKTEGD 160
>gi|225572063|ref|ZP_03780927.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
10507]
gi|225040498|gb|EEG50744.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
10507]
Length = 172
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S+ + + V+ +Y ++ ++I +L + Q+ G++S AI ++ + ++ +
Sbjct: 13 SDGNFAELAPVLEKY--AKVPGSLITILQKTQDIYGYLSMDAINYISERTGIMPAKIYGV 70
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY QF+L P+G + + +C T C + G + + E + + DG + V
Sbjct: 71 ATFYAQFRLQPIG-KYLIMLCKGTACHVNGADMIQEAVSEHLGIQDGETTEDGLFTLNAV 129
Query: 139 ECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTGQ 176
C G C AP++M+ G++T+ +LT + +I+D +
Sbjct: 130 ACLGCCSLAPVMMVKTVDGEETFGNLTKSSVTKILDDYKAKN 171
>gi|300246021|gb|ADJ94068.1| putative anaerobic benzoate-degrading protein BamG [Clostridia
bacterium enrichment culture clone BF]
Length = 161
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++E+ + +V + Y + A+IP+L +AQE G++ + V+ L + ++ +
Sbjct: 11 TKEAL-ELEKVFAEY--RGKKGALIPVLQKAQEIYGYLPAEVLREVSRNLQIPVSKIFGV 67
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY QF L P G R V+VC T C +RG K+ E I D ++E V
Sbjct: 68 VTFYAQFHLHPRG-RNIVRVCLGTACHVRGGAKISEAVTKAIGIIDGETTEDLRYTFESV 126
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC AP++M+ +T+ LTP+ ++ +++ +
Sbjct: 127 ACLGACGLAPVMMVNDETHGRLTPDMVKGLLEQYK 161
>gi|188588389|ref|YP_001921433.1| Fe-hydrogenase gamma subunit [Clostridium botulinum E3 str. Alaska
E43]
gi|188498670|gb|ACD51806.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E3
str. Alaska E43]
Length = 163
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +A
Sbjct: 5 EEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138
TFY F L P G + +++C T C +RG ++E R + D + E V
Sbjct: 63 TFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP+ + Y +T ++ +II
Sbjct: 122 SCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157
>gi|260892083|ref|YP_003238180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
KC4]
gi|260864224|gb|ACX51330.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
KC4]
Length = 149
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ EV+ Y +I L+ Q G++ A+ +A L + +V +ATF
Sbjct: 2 EEAILEEVVRIY--RGKPEKLIAALLALQRHYGYLPEPALRTLAQELGVPLSKVYGVATF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF+L P G + V VC T C +RG E++ + ++ +P +DG + E V C
Sbjct: 60 YAQFRLKPRG-KHTVCVCLGTACHVRGSEQIFHALKRELGVEPGDTTADGRFTLEVVSCV 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+V++ ++T+ L PE+ ++ +
Sbjct: 119 GACSMAPVVVVDEETHGRLDPEKALALLKKY 149
>gi|226939460|ref|YP_002794533.1| NADH dehydrogenase subunit E [Laribacter hongkongensis HLHK9]
gi|226714386|gb|ACO73524.1| NuoE [Laribacter hongkongensis HLHK9]
Length = 166
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRA---QEQEGWVSRAAI------EVVANIL 68
S E+ ++ +++YP + +SAV+ L A + ++G E VA+ L
Sbjct: 2 LSPEALQLIDREVAKYPADQARSAVMGALRIALTERREQGRTPEERCLTTELVEFVADYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ + E+ATFY + + PVG + + VC PC LRG + + K+
Sbjct: 62 GIPPVAAYEVATFYNMYDMKPVG-KYKLTVCTNLPCALRGGVDTADYLQKKLGIALGETT 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+DG + E EC GAC +AP++++ +TPE +++ + F
Sbjct: 121 ADGKFTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDQKLAEF 165
>gi|320354224|ref|YP_004195563.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
gi|320122726|gb|ADW18272.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
Length = 152
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++ Y R + +IPLL Q++ ++S A++ VA+ L+++ V +ATFY QF
Sbjct: 8 LENILTAY--GRERDNLIPLLQEVQDRFRYLSPEAVQAVADHLELSANDVYGVATFYAQF 65
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P G H++VC T C +RG ++++E P +S+G S E V C G+C
Sbjct: 66 RFVPPG-LHHIKVCEGTACHVRGSDRILESISRATGIAPGQTSSNGQFSLERVACFGSCA 124
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
AP+V++ Y +T + ++I+
Sbjct: 125 LAPVVVVDDKVYGRMTAAKTNKLIED 150
>gi|255527513|ref|ZP_05394381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|255508783|gb|EET85155.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
Length = 160
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+VI +YP + + +L Q + ++ R ++E +A L+ R+ +ATFY
Sbjct: 14 KDVIQKYPKEQRY--TLAILQDIQRKYRYIPRESLEALAEYLETPVSRLYGMATFYKALS 71
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L+P G + VC T C + G +++ + +P D S V C G C
Sbjct: 72 LTPKGE-NIITVCDGTACHVSGSMVVMDELEKILGIRPGGTTEDRKFSINTVNCIGCCAI 130
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AP++MI + Y +LTP+ ++EI+D + +
Sbjct: 131 APVMMINEKFYGNLTPKMIKEILDEYRGEK 160
>gi|300114496|ref|YP_003761071.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
C-113]
gi|299540433|gb|ADJ28750.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
C-113]
Length = 154
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E ++ S YP ++ I + Q GW+S ++ +A+ L ++ +
Sbjct: 2 LSAEEIKAIDAERSHYPTAQAVG--IEAMKIVQHHRGWISDESLREIADHLGLSVESLDG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
ATFY PVG + + +C + C + G E+L E + ++ DG +
Sbjct: 60 AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQKELKIGLGETTQDGRFTLLP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++++ +D + DL E++ EI+ +
Sbjct: 119 SCCLGACERAPVMIVDEDLHGDLDSEKIGEILADY 153
>gi|223558017|gb|ACM91023.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
Length = 161
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E++ + + ++ + Y + +I +L + Q G++ +VVA+ L + RV
Sbjct: 7 KITEDNYLKIKDICASY--NNNPGELINVLHKTQGTFGYLPEEVQQVVADCLGIPVGRVY 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY+ F + P G + + VC T C ++G EK+++ ++++ DG S +
Sbjct: 65 GVVSFYSFFTMKPKG-KYAISVCLGTACYVKGAEKILDALKSELKISEGGVTEDGKFSLD 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ C GAC AP++ I TY L PE ++EI+ ++
Sbjct: 124 VLRCVGACGLAPVMTINGKTYGRLVPEHVKEILAEYAE 161
>gi|148379809|ref|YP_001254350.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. ATCC 3502]
gi|153934211|ref|YP_001384107.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. ATCC 19397]
gi|153936196|ref|YP_001387647.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. Hall]
gi|148289293|emb|CAL83389.1| putative electron-transferring subunit of iron-only hydrogenase
[Clostridium botulinum A str. ATCC 3502]
gi|152930255|gb|ABS35755.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152932110|gb|ABS37609.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
str. Hall]
gi|322806086|emb|CBZ03653.1| NAD-reducing hydrogenase subunit HoxE [Clostridium botulinum H04402
065]
Length = 159
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I+ S + ++I +L +AQ G++ E VA LD++ +V + TFY+
Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDISVSKVYGVITFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + VC T C ++G ++ NK++ K DG + + + C GA
Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFENKLNIKVGETTKDGKFTLQVLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y T ++++++ +
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEY 157
>gi|187934365|ref|YP_001886498.1| Fe-hydrogenase gamma subunit [Clostridium botulinum B str. Eklund
17B]
gi|187722518|gb|ACD23739.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B
str. Eklund 17B]
Length = 163
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +A
Sbjct: 5 EEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138
TFY F L P G + +++C T C +RG ++E R + D + E V
Sbjct: 63 TFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP+ + Y +T ++ +II
Sbjct: 122 SCLGACGLAPVCTVNDVVYPSMTQQKARDIIKKLKE 157
>gi|15616777|ref|NP_239989.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681532|ref|YP_002467917.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682088|ref|YP_002468472.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471213|ref|ZP_05635212.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11133961|sp|P57255|NUOE_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain E [imported] -
Buchnera sp. (strain APS)
gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621821|gb|ACL29977.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624375|gb|ACL30530.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311085899|gb|ADP65981.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086472|gb|ADP66553.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087053|gb|ADP67133.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 162
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + E + Y R S I L Q++ GWVS AI +A IL +
Sbjct: 7 KFKLTNEEINAIENQKKYYEDFRAIS--IEALKIVQKKRGWVSDQAIYAIAEILHINPSD 64
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+Q PVG R ++ C + C L G +++ N + K D +
Sbjct: 65 VEGVATFYSQIFRKPVG-RNIIRYCDSVVCFLTGYKRIQIALENYLKIKIGETTKDDRFT 123
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C G C P +MI +DTY LTPE + +++++
Sbjct: 124 LLPVCCLGNCDKGPTIMINEDTYSVLTPESIPSLLESYK 162
>gi|291549369|emb|CBL25631.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus torques
L2-14]
Length = 159
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+E+I++Y ++IP++ QE+ ++ + VA L ++ + +A+FY
Sbjct: 7 YEKTDEIIAQYTCEEK--SLIPIIQGIQEEYRYLPPELLTYVAEKLGISEAKAYSVASFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F G + ++VC T C +R ++E ++ K H D + E V C
Sbjct: 65 ENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLGKKKHTTDDQLFTVETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP VM+ + + +TPE++ E+I +
Sbjct: 124 GACGLAPAVMVNDEVHPKMTPEKMSELIKKLREEE 158
>gi|164686659|ref|ZP_02210687.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
16795]
gi|164604049|gb|EDQ97514.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
16795]
Length = 166
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+SA+I +L AQ G++ + +A+ L ++ +V + +FY+ F +P+G + V
Sbjct: 27 ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIGE-YKISV 85
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C T C ++G +K++ ++ K D + E + C GAC AP+V++ Y
Sbjct: 86 CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145
Query: 159 DLTPERLEEIIDAFSTGQ 176
TP+ + +I+D + +
Sbjct: 146 QATPDDVSKILDNYRNLE 163
>gi|118579912|ref|YP_901162.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118502622|gb|ABK99104.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
propionicus DSM 2379]
Length = 169
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
V+ ++ +Y + + +L Q++ ++ + V LD+ +V + +FY
Sbjct: 17 EVDLILEKY--DHQPARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAH 74
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143
F L P G + +++C T C + ++E K+ D + E V C GA
Sbjct: 75 FTLEPRG-KYVIRLCDGTACHAKRSIPILEALYAKLGLSSKKVTTPDMLFTVETVTCLGA 133
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
C AP+++I ++ Y +TP +ID + +
Sbjct: 134 CGLAPVMLINEEVYGRVTPASAVALIDEIIAKEANA 169
>gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|253571680|ref|ZP_04849086.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|251838888|gb|EES66973.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
Length = 158
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A+ L + +V + TFYT
Sbjct: 12 EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG+ Y L P +++II+
Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157
>gi|251779355|ref|ZP_04822275.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243083670|gb|EES49560.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 163
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +A
Sbjct: 5 EEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138
TFY F L P G + +++C T C +RG ++E R + D + E V
Sbjct: 63 TFYENFSLQPKG-KYVIKICNGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP+ + Y +T ++ +II
Sbjct: 122 SCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157
>gi|206896425|ref|YP_002246547.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
5265]
gi|206739042|gb|ACI18120.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
5265]
Length = 172
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 23 AIWVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V E ++ + ++I +L AQE G++ E+++ + + I TF
Sbjct: 10 IDRVEEFRAKLEELKKVPGSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIVTF 69
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y++F + P + + +C T C +RG +++E + + SDG S E C
Sbjct: 70 YSRFSIVP-AGKYKISLCLGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAARCL 128
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
GAC AP++MI + Y LTP+ ++I
Sbjct: 129 GACALAPVMMINGEVYGRLTPDEAVKVIQRIKK 161
>gi|91200212|emb|CAJ73256.1| strongly similar to to proton-translocating NADH dehydrogenase I,
24 kDa subunit (NuoE) [Candidatus Kuenenia
stuttgartiensis]
Length = 156
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + ++SR + +IP+L QE+ G++ A+E V+ D+ R+ + TF
Sbjct: 11 NLDKCHAILSR----AASNDLIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTF 66
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+QF L P G + V++C T C ++G + E + + K D + + V C
Sbjct: 67 YSQFSLVPRG-KHTVRLCAGTACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACL 125
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C AP++MI Y LT E+ EEI+ ++
Sbjct: 126 GTCFLAPVMMIDDRYYGKLTEEKTEEILKSY 156
>gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile 630]
gi|255102608|ref|ZP_05331585.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-63q42]
gi|255308434|ref|ZP_05352605.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile ATCC 43255]
gi|255657358|ref|ZP_05402767.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-23m63]
gi|296451828|ref|ZP_06893547.1| Fe-hydrogenase [Clostridium difficile NAP08]
gi|296879776|ref|ZP_06903750.1| Fe-hydrogenase [Clostridium difficile NAP07]
gi|115252465|emb|CAJ70308.1| putative iron-only hydrogenase,electron-transferring subunit
HymA-like [Clostridium difficile]
gi|296259307|gb|EFH06183.1| Fe-hydrogenase [Clostridium difficile NAP08]
gi|296429247|gb|EFH15120.1| Fe-hydrogenase [Clostridium difficile NAP07]
Length = 165
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ A+I +L AQ G++ + VA L +A +V + TFY+ F PVG + +
Sbjct: 25 KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G +K++ ++ K SD S E + C GAC AP+V + Y
Sbjct: 84 VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143
Query: 158 EDLTPERLEEIIDAFSTGQ 176
+ P+++ EI+D + +
Sbjct: 144 GKVKPDQVSEILDTYRELE 162
>gi|254977027|ref|ZP_05273499.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-66c26]
gi|255094354|ref|ZP_05323832.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile CIP 107932]
gi|255316107|ref|ZP_05357690.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-76w55]
gi|255518768|ref|ZP_05386444.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-97b34]
gi|255651946|ref|ZP_05398848.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-37x79]
gi|260684910|ref|YP_003216195.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile CD196]
gi|260688568|ref|YP_003219702.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile R20291]
gi|306521695|ref|ZP_07408042.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile QCD-32g58]
gi|260211073|emb|CBA66443.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile CD196]
gi|260214585|emb|CBE07150.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile R20291]
Length = 165
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ A+I +L AQ G++ + VA L +A +V + TFY+ F PVG + +
Sbjct: 25 KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G +K++ ++ K SD S E + C GAC AP+V + Y
Sbjct: 84 VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143
Query: 158 EDLTPERLEEIIDAFSTGQ 176
+ P+++ EI+D + +
Sbjct: 144 GKVKPDQVSEILDTYRELE 162
>gi|224824819|ref|ZP_03697926.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
gi|224603312|gb|EEG09488.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
Length = 166
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68
S +S ++ +++YP + +SAV+ L A E+ +++ IE VAN L
Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALEERRSTGETPEARCLNQEVIEFVANYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
++ + E+ATFY + + PVG + + VC PC L G E K+ +
Sbjct: 62 EIPPVAAYEVATFYNMYDMKPVG-KYKITVCTNLPCALSGGVNAAEYISGKLGIAIGETS 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
+DG + E EC GAC +AP++++ +TPE +++ +
Sbjct: 121 TDGMYTLLEGECMGACGDAPVLLVNNHSMCSFMTPEAIDKKLAELK 166
>gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
6192]
gi|306532784|gb|ADN02318.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
6192]
Length = 160
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
Q + + E ++ + + +I +L + QE G++ R +A ++D+
Sbjct: 3 QTAEVTLHPELMAFIEQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVIDVP 56
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
++ + TFY F+L + + VC T C L+G E +++ + + P DG
Sbjct: 57 LAKIYGVITFYHFFKL-RKPGKHRISVCMGTACFLKGGEDILKELEDLLGVGPNTATEDG 115
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
S+E V C G C AP+VM+ + Y +T + L I+ +
Sbjct: 116 LFSFEAVRCLGCCGLAPVVMVDGEVYGKVTKDDLPGILAKYRE 158
>gi|261346154|ref|ZP_05973798.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
gi|282565807|gb|EFB71342.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
Length = 179
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F ++E + Y +R +A I L Q+ GWV AI +A +L + V
Sbjct: 25 FILTDEERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIAEVLGIPASDV 82
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG R ++ C + C + G + L +++ +P DG +
Sbjct: 83 EGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTTEDGRFTL 141
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C P +MI +DT+ + PE ++++++ +
Sbjct: 142 LPTCCLGNCDKGPSMMIDEDTHTHVQPENIQKLLEQY 178
>gi|153939211|ref|YP_001391109.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. Langeland]
gi|152935107|gb|ABS40605.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. Langeland]
gi|295319155|gb|ADF99532.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. 230613]
Length = 159
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+
Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + VC T C ++G ++ K++ K DG + + + C GA
Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y T + ++++ +
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVNKVLEEY 157
>gi|256544553|ref|ZP_05471926.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
E) [Anaerococcus vaginalis ATCC 51170]
gi|256399878|gb|EEU13482.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
E) [Anaerococcus vaginalis ATCC 51170]
Length = 177
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 15 SFSFS-EESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
+F F EE+ +NE ++ + ++P+L AQ G++ +E+++N L++
Sbjct: 18 NFVFDKEENREKINE-FKKFIEKNKDRKGPLMPILQEAQSIFGYLPDEMMELISNKLNIP 76
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V +ATFY+QF P G + +C T C ++G ++ ++ K DG
Sbjct: 77 LAEVYGVATFYSQFTFVPKGKT-DIHICLGTACYVKGAADILNEFEQRLGIKKGETTPDG 135
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
S E C G C AP+V I + E T + + ++++
Sbjct: 136 KFSISETRCLGNCGAAPVVEINGEQVEHFTKDDVSKVLEE 175
>gi|322421846|ref|YP_004201069.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
gi|320128233|gb|ADW15793.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
Length = 168
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
N++I +Y ++P+L Q+ G+V + I++VA L++ ++ + TF
Sbjct: 15 DLTEANQIIDKYLTL--PGNLMPVLQGIQDAYGFVPKPTIDLVAERLNVYPSQIYGVLTF 72
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G R ++VC T C ++G E++ E ++ D ++E+V C
Sbjct: 73 YAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETTEDLRYTFEKVACL 131
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+ M+ DT+ +T ++++EII+ +
Sbjct: 132 GACGMAPLAMVNDDTFGKMTVQKVDEIIETY 162
>gi|255526811|ref|ZP_05393710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296186423|ref|ZP_06854826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
gi|255509490|gb|EET85831.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296048870|gb|EFG88301.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
Length = 159
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ ++I +L +AQ G++S+ + VA LD+ +V + TFY+ F +
Sbjct: 22 EEKKGSLISVLHKAQNLFGYLSKDVQKFVAKKLDIPVSKVNGVVTFYSYF-TEEPTGKYV 80
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C T C ++G ++E K+ + SDG + + + C GAC AP+V +
Sbjct: 81 INICMGTACFVKGSGDVLEEFERKLDIEVGETTSDGKFTIQVLRCVGACGLAPVVTVNDK 140
Query: 156 TYEDLTPERLEEIIDAFST 174
Y T + +++I+D +
Sbjct: 141 VYGHFTKQMVDKILDEYKE 159
>gi|77164633|ref|YP_343158.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
oceani ATCC 19707]
gi|254433276|ref|ZP_05046784.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
oceani AFC27]
gi|76882947|gb|ABA57628.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
gi|207089609|gb|EDZ66880.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
oceani AFC27]
Length = 154
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E ++ + YP ++ I + Q GWVS ++ +A L ++ +
Sbjct: 2 LSTEEIKAIDAERAHYPTAQAVG--IEAMKIVQHHRGWVSDESLREIAEYLGLSVESLDG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
ATFY PVG + + +C + C + G E+L E + ++ DG +
Sbjct: 60 AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQTELKIGLGETTQDGRFTLLP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++++ +D + DL E++ EI+ +
Sbjct: 119 SCCLGACERAPVMVVDQDLHGDLDSEKIGEILAGY 153
>gi|226949093|ref|YP_002804184.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A2 str. Kyoto]
gi|226840738|gb|ACO83404.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A2 str. Kyoto]
Length = 159
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+
Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G + VC T C ++G ++ K++ K DG + + + C GA
Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y T + ++++ +
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVAKVLEEY 157
>gi|53804299|ref|YP_113851.1| formate dehydrogenase subunit gamma [Methylococcus capsulatus str.
Bath]
gi|53758060|gb|AAU92351.1| formate dehydrogenase, gamma subunit [Methylococcus capsulatus str.
Bath]
Length = 159
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
A++P+L Q++ G++ A+ +A L+++ V + +FY F+ + G + + +
Sbjct: 22 PGALLPILHGIQDRIGFIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPG-KHTIHL 80
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C E L + ++ +DG S E V C G C +P +MI + Y
Sbjct: 81 CRAESCQAMNSESLETHVKARLGIDYHETTADGAFSLEPVYCLGNCACSPSMMIDHEVYG 140
Query: 159 DLTPERLEEIIDAFST 174
++P+ + IID
Sbjct: 141 HVSPQSFDAIIDELKE 156
>gi|300245745|gb|ADJ93930.1| putative benzoate-degrading protein BamG [Clostridia bacterium
enrichment culture clone BF]
Length = 178
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E +N VI + A+IP+L +AQ+ G++ V+ L + V +
Sbjct: 19 DEKLAKLNAVIEEFKD--QPGALIPVLHKAQQIYGYLPEEVQYHVSQGLRVPLADVYGVV 76
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F ++P G + VC T C ++G +L+ +++ K + D S E
Sbjct: 77 TFYALFTMTPRGENN-IAVCLGTACYVKGAGELVSKISDELGIKIGEISQDRKFSMEATR 135
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP++ + ++ + L +L E++ +
Sbjct: 136 CIGACGLAPVLTVNEEVHGRLDAGQLGELLQKYKE 170
>gi|147678984|ref|YP_001213199.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
thermopropionicum SI]
gi|146275081|dbj|BAF60830.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
thermopropionicum SI]
Length = 162
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +++ +Y + +IP+L AQ G++ + ++ ++ L++ + +V +ATFY
Sbjct: 15 EEALQKLLDQYRD--YKGGLIPVLQEAQNIYGYLPKEVLQQISKELNVPFSKVFGVATFY 72
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF L P G R ++VC T C +RG K+ E R+ + D + E V C G
Sbjct: 73 AQFHLKPRG-RNIIRVCLGTACHVRGGAKIYEAVRDHLGISHGETTDDLRYTIENVACIG 131
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC +P +M+ DT+ L P R+ I+D +
Sbjct: 132 ACGLSPCMMVNNDTHGRLVPSRVPAILDQY 161
>gi|296134043|ref|YP_003641290.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
gi|296032621|gb|ADG83389.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
JR]
Length = 163
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+++VI Y A+IP+L +AQE G++ ++ L + V + TFY+
Sbjct: 15 AELDKVIEEY--RGTPGALIPVLHKAQEIFGYLPEEVQYRISQGLGLPLADVYGVVTFYS 72
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+F L P G + + VC T C ++G +L+ ++ KP DG S E C GA
Sbjct: 73 RFTLVPKG-KHDIGVCLGTACYVKGAGELVGWLDKELGLKPGGITRDGLFSLETTRCVGA 131
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP+V IG++ LT E+ EII +
Sbjct: 132 CGMAPVVTIGEEVKGRLTVEQFSEIIREYQQ 162
>gi|302387718|ref|YP_003823540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
saccharolyticum WM1]
gi|302198346|gb|ADL05917.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
saccharolyticum WM1]
Length = 164
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
+ Q F+ ++E I + EVI+ ++ +++P++ +AQE G++ ++++
Sbjct: 4 KTQGVQFNGTKEQEIALKEVIALLRDTK--GSLMPIMQKAQEIYGYLPIEVQTMISDETG 61
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
+ ++ +ATFY QF L P G + + VC T C ++G + +
Sbjct: 62 IPLEKIYGVATFYAQFALQPKG-KYQISVCLGTACYVKGSGDIFHKLEEILGITNGECTP 120
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG S + C GAC AP++M+ + Y L+ + + +I+ +
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMVNGEVYGRLSADDVPDILAKY 163
>gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate
dehydrogenase gamma subunit) [Janthinobacterium sp.
Marseille]
gi|151281625|gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate
dehydrogenase gamma subunit) [Janthinobacterium sp.
Marseille]
Length = 159
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 19 SEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ V +I+ R A++P+L Q G++ + + +A L+++ V
Sbjct: 5 TPFDLAAVEAIIA----QRKATPGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVH 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ T+Y F+ PVG VQ+C C RGCE L + + + D + +
Sbjct: 61 GVITYYHFFRQHPVGE-HVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQ 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
V C G C + P + I D Y ++ E+ +I A
Sbjct: 120 TVYCLGQCASGPAIQIDDDLYARVSKEKFNSLIQA 154
>gi|310658218|ref|YP_003935939.1| fe hydrogenase, electron-transfer subunit [Clostridium sticklandii
DSM 519]
gi|308824996|emb|CBH21034.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
sticklandii]
Length = 159
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ ++E + + I+ ++A+I +L +AQ G++ + + L + +V
Sbjct: 5 TLNKELYDQLADYIAN--IENKETALIEVLHKAQNLFGFIPKEVQLFIGEKLGVPASKVF 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY+ F P G + + VC T C +R + L+ + KP + S E
Sbjct: 63 GVVSFYSYFTTEPKG-KYVINVCMGTACFVRKADSLLRELEKVLCIKPGETTENKMYSIE 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ C GAC AP++M+ + Y +T + + +I+ ++
Sbjct: 122 ALRCVGACGLAPVIMVNDEVYGKVTVDDIPKILAKYAD 159
>gi|111075025|gb|ABH04875.1| NAD(P)H-quinone oxidoreductase 24 kDa subunit [Heliobacillus
mobilis]
Length = 171
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S + ++ YP + + +L Q++ ++ R ++E++A+ L++ ++ +
Sbjct: 5 SPDRVAVTGRILEGYPKEQRY--TLAMLQDIQKEFQFIPRESMELIADYLELPLSKIYSL 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY L P G + +++C T C +R + L + +P DG S E V
Sbjct: 63 ATFYKALSLRPKG-KHVIKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+++I + Y +TP +L+EII +
Sbjct: 122 NCLGACAIAPVIVIDETFYGKVTPAKLQEIIAQY 155
>gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
gi|6647652|sp|O66842|NUOE_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
Length = 160
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+ F F EE + E I+ +P R A++ L Q G++ +++ +A++L++
Sbjct: 4 TEFEFPEELKTKLQEHINYFPKKRQ--AILLCLHEIQNYYGYIPPESLKPLADMLELPLN 61
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V + FY F + ++VC + C L G KL++ N + KP DG
Sbjct: 62 HVEGVVAFYDMFDREDK-AKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKF 120
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V+C GAC AP+ M+ D Y+ + +L EI+ +
Sbjct: 121 KIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRY 159
>gi|270307596|ref|YP_003329654.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
gi|270153488|gb|ACZ61326.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
Length = 155
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V+ VI++ + +++P L QE+ G++ A+ + L + I + + TFY
Sbjct: 6 KEKVDGVITQ--SGSSRLSLLPCLEAVQEECGYIPHEAVNYLRECLGIPSIDIYGMITFY 63
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + G + +++C + PC L G E +++ + + +P D + E V C G
Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C +P ++I Y LT + + E++D
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELR 153
>gi|296124093|ref|YP_003631871.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
limnophilus DSM 3776]
gi|296016433|gb|ADG69672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
limnophilus DSM 3776]
Length = 159
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S++ + +YP ++ +P L ++ VS AIE +A +L++ V +
Sbjct: 4 LSDDLRARIVAEFPKYPN--KRAVTLPALHLVHDELRHVSTGAIEEIAELLELHPSEVHD 61
Query: 78 IATFYTQFQLSPVG-TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
TFY F+ + V VC + C LRG E+L+ K+H P DG ++ E
Sbjct: 62 TMTFYQFFRTEENPLGKHRVWVCRSISCGLRGGEELLAHMCEKLHVTPGGTTEDGKITLE 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
EC G C AP V++ +D ++T E +++I
Sbjct: 122 FAECLGVCDGAPCVLVDEDCVHNVTHEMADKLISELKA 159
>gi|34496400|ref|NP_900615.1| NADH dehydrogenase subunit E [Chromobacterium violaceum ATCC 12472]
gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase, chain E [Chromobacterium violaceum
ATCC 12472]
Length = 166
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68
S +S ++ +++YP + +SAV+ L A ++ ++ IE VAN L
Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALDERRAAGETPEARCLNPELIEFVANYL 61
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+A + E+ATFY + + PVG + + VC PC L G E K+ +
Sbjct: 62 GIAPVAAYEVATFYNMYDMKPVG-KFKITVCTNLPCALSGGVNAAEYISKKLGIAIGETS 120
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
+DG + E EC GAC +AP++++ +TPE +++ +
Sbjct: 121 ADGMYTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDKKLAELK 166
>gi|150007690|ref|YP_001302433.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|255013605|ref|ZP_05285731.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
gi|256839951|ref|ZP_05545460.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
gi|262381801|ref|ZP_06074939.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
gi|298375636|ref|ZP_06985593.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
gi|301310273|ref|ZP_07216212.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
gi|149936114|gb|ABR42811.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|256738881|gb|EEU52206.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
gi|262296978|gb|EEY84908.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
gi|298268136|gb|EFI09792.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
gi|300831847|gb|EFK62478.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
Length = 162
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++ + + + +I +L AQ G++ +V+A L++ RV + TFY+
Sbjct: 12 AELHAICAE--RNNDPGELINILHAAQGLFGYLPPEVQQVIAAELNIPVSRVYGVVTFYS 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG E ++E + ++ K DG S + + C GA
Sbjct: 70 FFTMTPKG-KYPISVCLGTACYVRGAENVLEEMQRQLEIKVGETTPDGLFSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+VMIG Y +TPE++ +I+ +
Sbjct: 129 CGLAPVVMIGGKVYGRVTPEKVRDILSDY 157
>gi|91775075|ref|YP_544831.1| formate dehydrogenase subunit gamma [Methylobacillus flagellatus
KT]
gi|91709062|gb|ABE48990.1| formate dehydrogenase gamma subunit [Methylobacillus flagellatus
KT]
Length = 156
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ + I + A++PLL Q+ ++ ++A L+++ V + T
Sbjct: 3 DQMARIQSHIESH--QHMAGALMPLLHAIQDDLSYIPEECYGLIAKALNLSVAEVHGVVT 60
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F+ P G R +QVC C GC L ++ + SDG+++ E V C
Sbjct: 61 FYHHFRTRPPG-RHVLQVCRAESCQAMGCGALESHVKSSLGIDYHETTSDGSITLEPVYC 119
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
G C +P +M+ + Y ++P+++E ++ +
Sbjct: 120 LGNCACSPAIMLDDEIYGRVSPQQVESLLASARRDNP 156
>gi|87120637|ref|ZP_01076531.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp.
MED121]
gi|86164280|gb|EAQ65551.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp.
MED121]
Length = 189
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 22 SAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ + V+ R ++P+L Q Q G+V +++ ++ L+++ V +
Sbjct: 23 NQAEIESVVGRILVELKDIPGPLLPILHEVQHQLGYVPDSSLPIIGKALNISRAEVHGVV 82
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G R ++VC C G L ++ + D ++ E V
Sbjct: 83 TFYHHFSSKPRG-RHIIEVCRAESCQSMGGRDLEAHAKSALGLDWYQTTMDKEITLEPVF 141
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C +P + +G + Y + E+ +EI+D
Sbjct: 142 CLGNCACSPAIRVGDEVYGRMDAEQFDEIVDELR 175
>gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the NADH:ubiquinone oxidoreductase
[Candidatus Kuenenia stuttgartiensis]
Length = 162
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + ++SR + +IP+L QE+ G++ A+E V+ D+ R+ + TF
Sbjct: 17 NLDKCHAILSR----AASNDLIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTF 72
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+QF P G + V++C T C ++G + E + + K D + + V C
Sbjct: 73 YSQFSQVPRG-KHTVRLCAGTACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACL 131
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C AP++MI Y LT E+ EEI+ ++
Sbjct: 132 GTCFLAPVMMIDDRYYGKLTEEKTEEILKSY 162
>gi|289523837|ref|ZP_06440691.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502927|gb|EFD24091.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 163
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S S + +++ RY + ++ LL+ QE+ +V A+ +A D+ RV
Sbjct: 2 LSATSKEAIEDLLYRYEKNPR--FLLQLLLDVQERFRYVPTEAMRSIARYFDIPESRVFA 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY L P G + ++VC T C LRG ++++ K+ DG + E
Sbjct: 60 VATFYKVLSLVPKGEK-TIKVCQGTACHLRGGKQVLSAIGEKLGIAAGETTEDGIFTLET 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
V C G C AP++M+G Y LT + + I++A
Sbjct: 119 VNCLGCCAMAPVMMVGDKVYGKLTVDDVSRILEAEKED 156
>gi|150021057|ref|YP_001306411.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
gi|149793578|gb|ABR31026.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
melanesiensis BI429]
Length = 163
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
E ++ I + +I +L +AQE GW+ + VA L + V + T
Sbjct: 9 ELYKELDAYIES--LKGKKGILINVLHKAQELFGWLPKEVQTHVAEKLKIPPSVVYGVIT 66
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F P G + +++C T C ++G ++++E N+++ K DG S V C
Sbjct: 67 FYNFFSTKPKG-KHQIKICLGTACYVKGADRVMERFLNELNVKEGEVTKDGNFSVHGVRC 125
Query: 141 QGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP+V++G K+ + +TP+ + II F G+G
Sbjct: 126 LGACSMAPVVLVGEKEFFGKVTPDMVPGIIKKFQ-GEGK 163
>gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Tolumonas auensis DSM 9187]
gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Tolumonas auensis DSM 9187]
Length = 570
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ +++ V+ +Y R +SA++P+L QE+ G+VS A++ VA++L + +V +A
Sbjct: 7 EKLREFISTVVGKY--DRQRSALLPILRVIQEEYGYVSELAMQYVADLLGIHAAKVYGVA 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY P G + +++ +++G + + + DG + +
Sbjct: 65 TFYHFINTEPKG-KFIIRLSRDISSIMKGANDIARQLETVLGIRFGETTPDGLFTLQWTS 123
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G AP +MI + + +LTP + +II
Sbjct: 124 CIGMDDQAPAMMINSEVFSNLTPLLIPQIIRQC 156
>gi|317133526|ref|YP_004092840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
harbinense YUAN-3]
gi|315471505|gb|ADU28109.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
harbinense YUAN-3]
Length = 160
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++ V+ ++ R+ SA+I +L QE+ ++ A+ V+ ++ + +A
Sbjct: 4 EQTIAAVDAIVDRH--DASPSALIAILEEIQEECHYLPGDALARVSERTGVSESEIFSVA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEV 138
TFY F L+ G + ++VC T C +R ++ R+K+ + D + E V
Sbjct: 62 TFYKNFSLTAKG-KYVIKVCDGTACHVRKSIPILNALRDKLGVSEAKPTTDDQLFTVETV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP++ + + +TPE ++D
Sbjct: 121 SCLGACGLAPVMTVNDHVHPKMTPETALAVVDGLRE 156
>gi|254480843|ref|ZP_05094089.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[marine gamma proteobacterium HTCC2148]
gi|41582333|gb|AAS07947.1| NADH-quinone oxidoreductase, E subunit [uncultured marine bacterium
463]
gi|214038638|gb|EEB79299.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[marine gamma proteobacterium HTCC2148]
Length = 167
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ S+E ++ I+ P + I L Q GWVS ++ +A L M+ +
Sbjct: 12 ALSQEELQAIDAEIAHVP--YRDAVAIDALKIVQAHRGWVSDESLSAIAAHLHMSADELD 69
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
IATFY PVG + + +C + C ++GC+ L + ++ + SD +
Sbjct: 70 GIATFYNLIYRRPVGDK-VILLCNSISCWIKGCDNLQQRITEELGVELGETTSDNRYTLL 128
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
V C GAC AP++M+G + +EDL E + I+
Sbjct: 129 PVTCLGACDKAPVMMVGDELHEDLCEESIIRIL 161
>gi|83590555|ref|YP_430564.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Moorella
thermoacetica ATCC 39073]
gi|83573469|gb|ABC20021.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
Length = 157
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + ++I + SA+I +L ++QE G++ R +A+ L ++ +V +
Sbjct: 7 EAKWEELEKIIDAH--RGQPSALIEVLHQSQELVGYLPRNVQVAIADGLGLSLSQVYSVV 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F P G + V VC T C ++G ++E ++ K +DG + +V
Sbjct: 65 SFYNHFTTKPKG-KYQVSVCMGTACFVKGAPAILERLEQELGTKVGDTTADGRFTINQVR 123
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P++ + + + LTP+ EI+ +
Sbjct: 124 CLGCCALGPVMTVNQKAHGRLTPDTALEILKEYQ 157
>gi|224456276|ref|ZP_03664749.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 131
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 43 IPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
+ L Q+Q G +++ +A L ++ + V E+ATFY + L PVG R + VC
Sbjct: 1 MEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCMYNLKPVG-RHKLNVCTN 59
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
CML G +++ K+ KP DG ++ +EVECQGAC +PM+ + K YE+LT
Sbjct: 60 VSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGACCGSPMLEVDKVFYENLT 119
Query: 162 PERLEEIIDAF 172
E++ +IID+
Sbjct: 120 IEKVNQIIDSL 130
>gi|148266250|ref|YP_001232956.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
uraniireducens Rf4]
gi|146399750|gb|ABQ28383.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
Length = 168
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 1 MSVRRLAEEEFQPSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
MS A E P +EE N++I ++ ++P+L Q++ G++ R
Sbjct: 1 MS---DAPAEVLP-----TEEIDLAAANQIIDKFLTL--PGNLMPVLQGIQDEYGYIPRP 50
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
I++VA L++ ++ + TFY QF L P G + ++VC T C ++G E++++ +K
Sbjct: 51 TIDLVAERLNVYPSQIYGVLTFYAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDK 109
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+H + D ++E+V C GAC AP+ M+ DT+ +T +++E II +
Sbjct: 110 LHIGHAETSPDLRFTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEGIIADY 162
>gi|320353703|ref|YP_004195042.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
propionicus DSM 2032]
gi|320122205|gb|ADW17751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
propionicus DSM 2032]
Length = 171
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V ++ ++ + +IP+L QE+ ++ + VA LD+ RV +ATFY
Sbjct: 17 YEKVCTILEQHDNQPQR--LIPILQAVQEEYRYLPEDVLTFVAAGLDVPPARVYGVATFY 74
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVECQ 141
+ F L P G + +++C T C ++ ++E ++ D + E V C
Sbjct: 75 SHFALEPKG-KYCIRLCDGTACHVKRSIPILEAIYKRLGLSSKRTTTEDMLFTVETVACL 133
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
GAC AP+V+I ++ + +TPE ++I+ +
Sbjct: 134 GACGLAPVVVINEEVHGQMTPEAAIQLINEIEEREK 169
>gi|302388829|ref|YP_003824650.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
16646]
gi|302199457|gb|ADL07027.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
16646]
Length = 175
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F E + +V+ Y ++I +L + Q+ G++ R A+ +A + +
Sbjct: 13 KKFPDDEVDLSALEQVLKEY--RGVPGSLITVLQKVQDIYGYLPRKALYHIAREIGVKPA 70
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V +ATFY QF+L P+G + + VC T C + G E + +++ K +DG
Sbjct: 71 KVFGVATFYAQFRLKPIG-KHLIMVCHGTACHVNGAELITSALCDELKIKDGETTADGLF 129
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ + V C G C AP++MI + Y LTP++ ++I
Sbjct: 130 TLQNVACLGCCSLAPVMMIDGEAYGKLTPDKARDVIRDI 168
>gi|160942427|ref|ZP_02089734.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
BAA-613]
gi|158434679|gb|EDP12446.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
BAA-613]
Length = 162
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+E+I + +R + ++IP++ QE+ ++ + VA + + + +A+FY
Sbjct: 7 YKKADEIIEMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKEIGITEAKAYSVASFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141
F G + +++C T C +R +++ + H D + E V C
Sbjct: 65 ENFSFEEKG-KYIIKICDGTACHVRKSMPILDYLYKTLKLNAKKHTTEDALFTVETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
GAC AP + + + Y ++PE+++++++ G+ D
Sbjct: 124 GACGLAPAITVNEKVYPKMSPEKMKKLLEEIKRGEPDA 161
>gi|294102541|ref|YP_003554399.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
colombiense DSM 12261]
gi|293617521|gb|ADE57675.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
colombiense DSM 12261]
Length = 156
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 19 SEESAIWVN---EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S+ + E+++ P + +IP+L AQ + G++ +E ++ L + +
Sbjct: 2 SQVELKKIQKTREIVA--PWKGKKGGLIPILQEAQHEFGYLPPEVMETISKELKIPKAEI 59
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY QF L P G R ++VC T C +RG K++E + D +
Sbjct: 60 YGVATFYAQFHLKPRG-RHVIRVCRGTACHVRGSLKILEKVKELTGVSENETTDDLRFTI 118
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E V C GAC AP++M+ T+ L P+ + ++ F
Sbjct: 119 EPVACLGACGLAPVMMVDSQTFGRLAPDMVAGVLAKF 155
>gi|251773163|gb|EES53716.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
ferrodiazotrophum]
Length = 176
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++ + + + AV+ +L Q++ G+V +E V L + + ++ + TFY+
Sbjct: 15 EEIDHICEEF--GNREGAVVQILQTIQDKYGYVPAEVLERVGEDLGIPHSKMFGVLTFYS 72
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF P G + ++VC T C +RG L++ + +H + D + E V C G+
Sbjct: 73 QFYREPRG-KFILKVCVGTACHVRGAGLLVDKIKENLHIEEGENTEDMMFTLEPVSCLGS 131
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGDT 179
C APM M+ +TY L+ +++ +++ F G+ +T
Sbjct: 132 CALAPMAMVNGNTYGKLSGDKMVDLLKQFREESAGEPET 170
>gi|164688082|ref|ZP_02212110.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
16795]
gi|164602495|gb|EDQ95960.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
16795]
Length = 166
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 18 FSEESAIWVNEV--ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F E++ +E+ + +SA+I +L AQ G++ + +A+ L ++ +V
Sbjct: 4 FVEQNRKLFDELDNLIDSLEVADESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKV 63
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ +FY+ F +P+G + VC T C ++G +K++ ++ K D +
Sbjct: 64 YGVVSFYSYFSTNPIGE-YKISVCLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTL 122
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
E + C GAC AP+V++ Y T + + +I+D + +
Sbjct: 123 EGLRCVGACGLAPVVVVNGKVYGQATTDDVSKILDNYRNLE 163
>gi|302342959|ref|YP_003807488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
baarsii DSM 2075]
gi|301639572|gb|ADK84894.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
baarsii DSM 2075]
Length = 168
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MS+ + P+ + E ++++ + Y A+IP+L Q G++ A
Sbjct: 1 MSLAEKSAYTEMPAD--VTPEMLTKIDQICADY--RGKPGALIPVLQACQGVVGYLPEAV 56
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A+ L MA V +ATFY+ F + P G R V+VC T C +RG ++ ++ +
Sbjct: 57 QQRIADGLGMAGHEVFGVATFYSFFTMKPRG-RNVVRVCLGTACYVRGGKETMDRLTQHL 115
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
D + E V C GAC AP+V+I +DT+ + + + +++ +
Sbjct: 116 TLNADGTTEDRRFTVEGVRCLGACGVAPVVVINEDTHRKIMADSVINLVERYQ 168
>gi|197285617|ref|YP_002151489.1| NADH dehydrogenase subunit E [Proteus mirabilis HI4320]
gi|227356120|ref|ZP_03840510.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
gi|194683104|emb|CAR43661.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis HI4320]
gi|227163765|gb|EEI48677.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
Length = 181
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
+F ++E + + Y R +A I L Q+ GWV AI +A++L +
Sbjct: 26 TFVLTQEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPASD 83
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
V +ATFY+Q PVG R ++ C + C + G + + ++ P DG +
Sbjct: 84 VEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNILPGQTTPDGRFT 142
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C P +M+ DT+ + PE +E +++ +
Sbjct: 143 LLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180
>gi|268323354|emb|CBH36942.1| putative NADH-quinone oxidoreductase chain E [uncultured archaeon]
Length = 153
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V+E+I RY + +I LL+ Q + W+S+ AI ++ + + ++ IA+F
Sbjct: 5 DLKRVDEIIERY--KGEEGVLIQLLLDVQSEFNWISKEAITQISERMQIPKSQIYRIASF 62
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y L PVG R +QVC T C +RG K+++ + K SD S + V C
Sbjct: 63 YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++++ + +TP +E I++ +
Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152
>gi|188585873|ref|YP_001917418.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350560|gb|ACB84830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 158
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
E V ++ ++ + A IP+L Q++ G++ + + V ++ + + I T
Sbjct: 10 EEVKKVENLVKKH--QDKKGAAIPILQDIQKELGYIPKEVLPKVTSLTKIPESDLYSIVT 67
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+QF+L PVG + VC T C L G E++ ++ + DG + E+V C
Sbjct: 68 FYSQFRLQPVGD-NLIHVCHGTACHLAGAEEITNALVRELEIGDEGTSPDGKFTVEKVAC 126
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C AP++ I +T+ LTP++ +I
Sbjct: 127 LGCCSLAPVMTINGETHGRLTPDKAVKIAKNI 158
>gi|125972949|ref|YP_001036859.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
thermocellum ATCC 27405]
gi|256005705|ref|ZP_05430661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
thermocellum DSM 2360]
gi|281417160|ref|ZP_06248180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
thermocellum JW20]
gi|125713174|gb|ABN51666.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
thermocellum ATCC 27405]
gi|255990336|gb|EEU00462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
thermocellum DSM 2360]
gi|281408562|gb|EFB38820.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
thermocellum JW20]
gi|316940815|gb|ADU74849.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
thermocellum DSM 1313]
Length = 165
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F +S ++ ++S + ++A+I +L QE+ ++ + ++ L ++
Sbjct: 7 EAFDYS-----MIDNILSEH--GTSETAIIAILQSIQEEYHYIPKEVFPYLSKKLKVSEA 59
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGT 132
R+ +ATFY F L P G + ++VC T C +R +IE R ++ D
Sbjct: 60 RIFSVATFYENFSLEPKG-KYIIKVCDGTACHVRKSIPIIERLRKELGLSGTKPTTDDLM 118
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E V C GAC AP++ + Y ++TP++ E+I G
Sbjct: 119 FTVETVSCLGACGLAPVITVNDKVYAEMTPDKASELIKQLREG 161
>gi|269791765|ref|YP_003316669.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099400|gb|ACZ18387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 174
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ + E I + P + +I +L +AQE G++ VA L++ +V + T
Sbjct: 12 QQFRELEEFIDKLPN--KKGELITVLHKAQEIFGYLPEEVQAFVARKLEIPLAKVYGVVT 69
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+ F + P G A V VC T C +RG E ++ + K + DG S + + C
Sbjct: 70 FYSFFTMEPKGKVA-VSVCMGTACYVRGAEDVLHELEKAMGVKAGKVSEDGYFSLDTLRC 128
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GAC AP+V++ + +TP + I+D +
Sbjct: 129 VGACGLAPVVIVNGRVFGRVTPADVPGIVDQYR 161
>gi|332296986|ref|YP_004438908.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
brennaborense DSM 12168]
gi|332180089|gb|AEE15777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
brennaborense DSM 12168]
Length = 160
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
FS E +++E +I +L + QE++G++S+ A + VA + RV
Sbjct: 9 FSPELNAFIDEW------KVKPGNLIMILHKVQEEQGFISKEAAQAVAERTNSPLARVYG 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWE 136
+ TFY F+ + V VC T C L+G + LI+ R+ + K DG S E
Sbjct: 63 VMTFYHFFKTQ-KPGKNKVSVCLGTACYLKGGQDLIDEARSILGLKAEDISTEDGLFSVE 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C G C AP++ + D Y LT ++ I+D +
Sbjct: 122 PVRCIGCCGLAPVLSVNGDVYGKLTKNQIAGILDKYRN 159
>gi|297618251|ref|YP_003703410.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
lipocalidus DSM 12680]
gi|297146088|gb|ADI02845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
lipocalidus DSM 12680]
Length = 180
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V +I +YP + ++P++ Q++ ++ + A+E+ A + V +ATFY F
Sbjct: 26 VQPIIDKYPAEKRY--ILPIMQDIQKRFNYLPKEALEIAAAYVGAPVSLVYSMATFYKAF 83
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L P G ++C T C ++ + +++ I +P DG S E V C GAC
Sbjct: 84 SLVPRGRVHF-RMCDGTACHIKSSQVILDEIHKCIGIRPGETTPDGQFSLETVNCLGACA 142
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
AP+++ + + +TP + EII +
Sbjct: 143 LAPVLVANQKVHPKVTPAAMREIIKQY 169
>gi|225175929|ref|ZP_03729921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225168517|gb|EEG77319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 166
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ ++ +Y +I +L +AQ+ G++ + + +A LD++ ++ + TFY+Q
Sbjct: 21 KMEALMQKY--QGKPEMLITVLQQAQDIYGFLPESVLLRIAEALDLSMAKIYGVVTFYSQ 78
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G R ++VC T C +RG ++++ + ++ + D + E V C GAC
Sbjct: 79 FHLKPRG-RNVIRVCQGTACHVRGVGRIMDKIKEELGIAEGETSEDLRFTLESVACIGAC 137
Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
AP++MI DT+ LT +R++ I+
Sbjct: 138 GLAPVIMINNDTHGRLTADRVKLIL 162
>gi|91203918|emb|CAJ71571.1| similar to to proton-translocating NADH dehydrogenase I, 24 kDa
subunit (NuoE) [Candidatus Kuenenia stuttgartiensis]
Length = 164
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 19 SEES----AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
S E+ +V+ +Y R ++IP+L Q G++ ++ V+ L+++
Sbjct: 8 SAENEALYLSKTEDVLEKYKHGR--GSLIPILQTIQTAYGYLPEKVVDFVSERLNISVNE 65
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
++ +ATFY QF + P G R ++ C T C ++G +++IE K+ D +
Sbjct: 66 IIGVATFYAQFHMRPRG-RHIIKACSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFT 124
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
EEV C GAC AP++M+ +D Y L + IID
Sbjct: 125 LEEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIIDEIK 163
>gi|257065151|ref|YP_003144823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
heliotrinireducens DSM 20476]
gi|256792804|gb|ACV23474.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
heliotrinireducens DSM 20476]
Length = 162
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ V E+I YP + + + + Q ++ + +A L ++ +A
Sbjct: 4 KDQTSKVKEIIEAYPADQRFA--LAAMQDMQHAFNYIPEEGLAALAEYLGCPQAQLYSMA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY L+P G V++C T C LRG L + + +P DG S E V
Sbjct: 62 TFYKALSLTPKGD-HIVKICNGTACHLRGSMNLATELKRDLGVEPGETTEDGKFSVELVN 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G+C AP++++ + L E++ II+ ++ +
Sbjct: 121 CLGSCALAPVMVVDGTYHNKLRVEQIPGIIERYAAEE 157
>gi|302392633|ref|YP_003828453.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
gi|302204710|gb|ADL13388.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
Length = 164
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E ++E+I + + +I +L +AQ+ G +SR +A LD+ + +V +
Sbjct: 14 DEKFEKLDEIIEQ--NRGQEGILINVLHQAQQIFGHLSRKIQVHIAEGLDIPFSKVYAVI 71
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY+ F G + ++VC T C ++G E ++E + ++ +P DG + E
Sbjct: 72 SFYSLFSTEMRG-KYTIEVCTGTACYVKGAEDILEQFKTELEIEPGETTEDGLFTLETTR 130
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++ +G DT+ L +++ +++D +
Sbjct: 131 CIGACGMAPVIKVGDDTHGRLKEDQVSDLLDKY 163
>gi|288818980|ref|YP_003433328.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
thermophilus TK-6]
gi|288788380|dbj|BAI70127.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
thermophilus TK-6]
gi|308752565|gb|ADO46048.1| formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus
TK-6]
Length = 153
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
++A+IP+L QE++G++ ++++++ L+++ V + TFY+ F+L P G + ++
Sbjct: 16 KKNALIPILHIIQERQGYIPEYTVDLLSSELNLSKAEVWGVITFYSDFRLKPPG-KHIIK 74
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC + C+ G K+ E + + DG + E V C G C AP VM+ Y
Sbjct: 75 VCRSEACLAMGGRKVQEHIKCILGIDFGQTTHDGIFTLEGVYCFGNCACAPSVMVDGKLY 134
Query: 158 EDLTPERLEEIIDAFSTGQ 176
PER++ I++ +
Sbjct: 135 GRAFPERIDMIMENILKKR 153
>gi|160893747|ref|ZP_02074531.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
gi|156864732|gb|EDO58163.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
Length = 160
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+++I+ Y +IP++ Q + ++ + VA+ L++ + +ATFY
Sbjct: 7 YDEADKIIAAY--GTEPRFLIPIIQDIQSEYKYLPPELLRYVADKLNITEAKAYSVATFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F G + ++VC T C +R ++ ++ K H D + E V C
Sbjct: 65 ENFSFDAKG-KFILKVCDGTACHVRKSMDILNQLYKELGLSKEKHTTDDMMFTLETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
GAC AP++ + + +TPE++ +I G +
Sbjct: 124 GACGLAPVMTVNDVVHPAMTPEKVTALIAELKEGADE 160
>gi|118594390|ref|ZP_01551737.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
gi|118440168|gb|EAV46795.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
Length = 157
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 22 SAIWVNEV-ISRYPPSR--CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + I ++ + A++PL+ Q+ G++ + ++++ +++ +
Sbjct: 2 NLSETQRITIEKHVETFLTKPGALLPLMHAIQDSLGYIPEDSYPIISSAYNLSIAEIHGF 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY F+ + +QVC C G E + C+ + + DG ++ E V
Sbjct: 62 VTFYHHFRT-SPSGKNILQVCRAESCQSMGSESIENYCKKVLGVDYHETSKDGVITLEPV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C +P VM+ +TPE+++ II A
Sbjct: 121 YCLGNCACSPSVMMNDKVIGRVTPEKIDNIIKAVKQ 156
>gi|301058585|ref|ZP_07199590.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
gi|300447317|gb|EFK11077.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
Length = 161
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ S + ++ YP ++ + L QE + WV+ + VA +L+MA +
Sbjct: 1 MAISPHEQREIEALLRIYPT--RRAVALEALKIVQEPKKWVTDEDLRDVAALLEMAPAEL 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG +++C C + G L E + P D +W
Sbjct: 59 DSLATFYSQIFRRPVGE-HVIRLCDGVSCWIMGETGLEERLSRLLSIGPGETTPDRRFTW 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C G C AP +MI D Y + PE L+ I++ ++
Sbjct: 118 LPVSCLGVCEQAPAIMIDDDLYTRIQPEDLDAILERYA 155
>gi|293376705|ref|ZP_06622928.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
sanguinis PC909]
gi|325845177|ref|ZP_08168485.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
sp. HGF1]
gi|292644662|gb|EFF62749.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
sanguinis PC909]
gi|325488773|gb|EGC91174.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
sp. HGF1]
Length = 158
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S + E+ ++ I + ++P+L AQ+ G++ + ++N ++ R+
Sbjct: 5 SLTSENFNKLDVFIQSHLSETE--GLMPILHEAQDIFGYIPLEVQKFISNRTGISVSRIH 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+QF P G + VC T C ++G + +++ + ++ +P SDG S
Sbjct: 63 GVVTFYSQFSTEPKGE-NVIGVCLGTACYVKGAQAILQKFKEELGIEPEQTTSDGKFSLV 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++ I D Y + ++ I+ +
Sbjct: 122 ATRCIGACGLAPVITINDDVYGKMDASQVSSILKKY 157
>gi|217077620|ref|YP_002335338.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
gi|217037475|gb|ACJ75997.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
Length = 163
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
E ++ I + +I +L +AQE GW+ + + VA L++ V + T
Sbjct: 10 ELYKELDAYIEE--LKGKKGILINVLHKAQELFGWLPQEVQDHVAKKLNIPSSVVYGVVT 67
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F P G + +++C T C ++G ++++E N++ + DG S V C
Sbjct: 68 FYNFFSTKPKG-KNQIKICLGTACYVKGADRVMERFLNELGVEESEVTKDGKFSVHGVRC 126
Query: 141 QGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFS 173
GAC AP+V++G KD Y +TP+ + II +
Sbjct: 127 LGACSMAPVVLVGEKDFYGKVTPDMVPGIIKKYK 160
>gi|57235005|ref|YP_180895.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 155
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V+ VI++ + +++P L QE+ G++ A+ + L + I + + TFY
Sbjct: 6 KEKVDGVITQ--SGSSRLSLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + G + +++C + PC L G E +++ + + +P D + E V C G
Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C +P ++I Y LT + + E++D
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELR 153
>gi|52549206|gb|AAU83055.1| NADH-ubiquinone oxidoreductase 24 kD subunit [uncultured archaeon
GZfos26D6]
Length = 153
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V+E+I Y + +I LL+ Q + W+S+ AI ++ + + ++ IA+F
Sbjct: 5 DLKRVDEIIEHY--KGEEGVLIQLLLDIQSEFNWISKEAIAQISERMQIPKSQIYRIASF 62
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y L PVG R +QVC T C +RG K+++ + K SD S + V C
Sbjct: 63 YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++++ + +TP +E I++ +
Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152
>gi|114566200|ref|YP_753354.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337135|gb|ABI67983.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 182
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
++I + ++I +L +AQ+ G++ + ++ +A L + +V IATFYTQF+L
Sbjct: 27 KIIEE--KRHEKGSLIAILQQAQDIYGYLPLSVLKCIARELGIKPAKVYGIATFYTQFRL 84
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P + + C T C + G E++ ++ K DG S E C G C A
Sbjct: 85 QP-AGKYQIMFCQGTACHVNGSERIESTLCQELKIKRGETTPDGLFSLESAACLGCCSLA 143
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
P++MI Y L+ E+ II + ++ G
Sbjct: 144 PVMMINGQAYGPLSAEKAIAIIRKIKAAESSSLVGG 179
>gi|302875115|ref|YP_003843748.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
gi|307690259|ref|ZP_07632705.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
cellulovorans 743B]
gi|302577972|gb|ADL51984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
Length = 160
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
SE + E I + + ++ +I +L +AQE G++ R ++ L + Y +V
Sbjct: 6 KLSEGKYKELEEFIKLH--NNNEAHLIVILHKAQELFGYLPREVQVFISKKLGIPYSKVY 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F + G + + VC T C +RG +++E K+ DG + +
Sbjct: 64 GVVTFYSFFSTTAKG-KYVINVCKGTACFVRGAGEILEEFEKKLEINQGETTQDGKYTID 122
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP+V + Y + ++++I +
Sbjct: 123 TLRCVGACGLAPVVSVNGKVYGHFNKKDVDKLIQEY 158
>gi|239616588|ref|YP_002939910.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
gi|239505419|gb|ACR78906.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
Length = 164
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 21 ESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
E + ++ Y +I +L +AQE G++S + VA+ L + +V +
Sbjct: 7 EDHEKLYTQLNEYIDQVKEEPGVLINVLHKAQELFGYLSEELQQHVADKLGVPLSQVHGV 66
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY F P G + V++C T C +RG ++++E + ++ SDG S V
Sbjct: 67 VTFYNFFTTKPKG-KHQVKICLGTACYVRGADRILERFKEELGVDLDEPTSDGLFSLHGV 125
Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQ 176
C GAC AP+V++G+ D Y +TP+ + II + +
Sbjct: 126 RCLGACSMAPVVLVGERDFYGKVTPDEVSAIIKKYRGEK 164
>gi|73748097|ref|YP_307336.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|147668875|ref|YP_001213693.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|289432123|ref|YP_003461996.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|146269823|gb|ABQ16815.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|288945843|gb|ADC73540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
Length = 155
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V+ VI++ + +++P L QE+ G++ A+ + L + I + + TFY
Sbjct: 6 KEKVDGVITQ--SGSSRLSLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + G + +++C + PC L G E +++ + + +P D + E V C G
Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLELVPCLG 122
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C +P ++I Y LT + + E++D
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELR 153
>gi|258516626|ref|YP_003192848.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257780331|gb|ACV64225.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
acetoxidans DSM 771]
Length = 163
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E++ ++ A+IP+L AQ+ G++ + ++ ++ L + + ++ ++TFY
Sbjct: 16 QQALQELLQKF-KGYK-GAIIPVLQGAQDIYGYLPKEVMQQISKDLRVPFSKIYGVSTFY 73
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF L P G R V+VC T C +RG +K+ E + D + E V C G
Sbjct: 74 AQFHLKPRG-RNIVRVCQGTACHVRGGKKIFEAVEKVLGISEGGTTEDLRFTLETVACLG 132
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP++MI DT+ L P ++ I++ +
Sbjct: 133 ACGLAPVLMINDDTHGRLVPGDIQGILEQY 162
>gi|160902611|ref|YP_001568192.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
SJ95]
gi|160360255|gb|ABX31869.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
SJ95]
Length = 154
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
+ +Y ++ L QE G++S I +A D+ R+ + +FY+ F L P
Sbjct: 16 MEKYYEKE----LLEELHDIQETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEP 71
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
G + V+VC + C L L+ ++ + + D + E EC G C P+
Sbjct: 72 TG-KYIVRVCDSVSCRLNESADLVRALKDYLKVEENETTKDKKFTLEVAECLGHCDEGPV 130
Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
+M+ Y LT + +I+D+
Sbjct: 131 MMVNDTYYTHLTVTKAIQILDSL 153
>gi|160947615|ref|ZP_02094782.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
gi|158446749|gb|EDP23744.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
Length = 161
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 15 SFSFS-EESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
+F F+ EE+ ++E+ + + A++P+L AQ G++ ++++A + +
Sbjct: 2 AFVFNVEENQDKIDELCE-FIDKKKDIPGALMPVLQEAQSIFGYLPEEIMDLIAKRMKIF 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+V +ATFY+QF P G + V VC T C ++G ++++ ++I + + D
Sbjct: 61 PAKVFGVATFYSQFSFIPKG-KYQVSVCMGTACYVKGAQEILNEFCDRIGVEVGGTSEDL 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
S + C G C AP+V I +D Y + + I+ +
Sbjct: 120 KFSVAQTRCIGECNLAPVVTINEDVYAHIKKADIRRIMRKYK 161
>gi|218961953|ref|YP_001741728.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit gamma (hymA-like) [Candidatus
Cloacamonas acidaminovorans]
gi|167730610|emb|CAO81522.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit gamma (hymA-like) [Candidatus
Cloacamonas acidaminovorans]
Length = 158
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
++++++++ + ++IPLL Q++ G++SR ++ +A+ +++ + +ATFY+
Sbjct: 7 ELDKILAKF--QDKKGSLIPLLQEVQKERGYLSRETMQYLADKMEIPSAEIFGVATFYSM 64
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143
F+L P G + ++VC T C + + + + SD + EV C G
Sbjct: 65 FRLKPQG-KHLIRVCKGTACHVSDVDSIKNAIIEILQLPEGENTTSDMQFTVMEVACLGC 123
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP++MI TY L PE + I++ + G +
Sbjct: 124 CSLAPVIMIDGKTYGKLVPEAIPAILNQYKNGDSE 158
>gi|322420256|ref|YP_004199479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
gi|320126643|gb|ADW14203.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
Length = 180
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 20 EESAIWVNEVISRYPP----SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
E + I +PP + + +I L +AQ+ G++ VAN + V
Sbjct: 15 PEKTSELAAYIDSFPPVTEWRKKRGDLIASLHKAQQLFGYLPEEVQLFVANKFRLQLSDV 74
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ TFY+ F + R V VC T C ++G ++++ +++ D S
Sbjct: 75 AGVVTFYSFF-VVRPPGRYTVNVCTGTACFVKGADRVLREFEHELGIASGETRGDLEFSL 133
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ C GAC AP+VM+ Y ++TP+ ++ I+ +
Sbjct: 134 GGLRCVGACSLAPVVMVNDRVYGNVTPDMVKAIVKECQALK 174
>gi|326791481|ref|YP_004309302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
gi|326542245|gb|ADZ84104.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
Length = 165
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
++ + + I+ P + A+I +L +AQ G++ + V L++ +V
Sbjct: 9 KLTQSLYAELEQFINELPE--KKGALIAVLHKAQGLFGYLPKEVQMFVGEKLNIPVSQVY 66
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY+ F ++P G + + VC T C +RG +K+++ + ++ + +DG S +
Sbjct: 67 GVVSFYSFFTMTPKG-KYPISVCLGTACYVRGADKVLDAFKKELGIEVGQTTADGRFSLD 125
Query: 137 EVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172
+ C GAC AP+V+IG+ Y + + E +++I+ +
Sbjct: 126 ALRCVGACGLAPVVLIGEKVYGRIGSAEEVKKILSEY 162
>gi|315186944|gb|EFU20702.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Spirochaeta thermophila DSM 6578]
Length = 160
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E ++++ + +I +L + QE G++ R +A +LD+ ++ +
Sbjct: 11 PELMSFIDQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVLDVPLAKIYGVI 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+L + + VC T C L+G E +++ + + P DG S+E V
Sbjct: 65 TFYHFFKL-RKPGKHRISVCLGTACFLKGGEDILKELEDLLGVGPNTATEDGLFSFEAVR 123
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C AP++M+ + Y +T + L I+ +
Sbjct: 124 CLGCCGLAPVLMVDGEVYGKVTKDDLPGILAKYRE 158
>gi|310826463|ref|YP_003958820.1| HydC [Eubacterium limosum KIST612]
gi|308738197|gb|ADO35857.1| HydC [Eubacterium limosum KIST612]
Length = 156
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
++ V E+++ + ++ +L QE+ G++ + +A+ LD+ V +AT
Sbjct: 8 DNLDVVKEIVAEHRDV--PGCLMQILQETQEKYGYLPIELQQTIADELDIPLTEVYGVAT 65
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+QF L P G + + VC T C ++G + +++ + + DG S + C
Sbjct: 66 FYSQFTLKPKG-KYKIGVCLGTACYVKGSQAILDKVTDTLGLAVGDTTEDGKFSVDATRC 124
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP++ I +D Y L+ +++I++ +
Sbjct: 125 VGACGLAPVMSINEDVYGRLSVNEVKDILEKY 156
>gi|183599633|ref|ZP_02961126.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
gi|188021885|gb|EDU59925.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
Length = 180
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F +E + Y R +A I L Q+ GWV AI +A +L + V
Sbjct: 26 FVLTEAERAEIEGEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIAEVLGIPASDV 83
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG R ++ C + C + G + L N+++ +P +DG +
Sbjct: 84 EGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIINQLNIRPGQTTADGRFTL 142
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C P +MI +DT+ + PE ++++++ +
Sbjct: 143 LPTCCLGNCDKGPTMMIDEDTHSYVQPEDIKKLLEQY 179
>gi|303242579|ref|ZP_07329056.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
cellulolyticus CD2]
gi|302589883|gb|EFL59654.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
cellulolyticus CD2]
Length = 161
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
+F+F +++++S++ ++ +I +L QE+ ++ + ++ L+++
Sbjct: 2 NETFNF-----KMIDDILSKH--GLSETYIIAILQSIQEKYRYIPKEVFPYLSKKLNVSE 54
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDG 131
R+ +ATFY F L P G + +++C T C +R ++E R ++ D
Sbjct: 55 ARIFSVATFYENFSLEPKG-KYVIKICDGTACHVRKSIPILERLRKELKLSDKKITTDDL 113
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
+ E V C GAC AP++ + + +TP++ E++ G D
Sbjct: 114 MFTVETVSCLGACGLAPVITVNDKVHPAMTPDKASELLKELREGNAD 160
>gi|254282424|ref|ZP_04957392.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
gi|219678627|gb|EED34976.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
Length = 167
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAV-IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ S+ ++ I+ P +SAV I L Q GWVS ++ +A L+M+ +
Sbjct: 11 ALSDSEIAAIDAEIAHVP---YRSAVAIDALKIVQAHRGWVSDESLRAIARHLEMSAEEL 67
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY PVG R + +C + C ++GC+K+ + +D +
Sbjct: 68 DGVATFYNLIFRQPVGDR-VILLCNSVTCWIKGCDKVQAAITENLGIGLGETTADNAFTL 126
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
V C GAC AP++M+G D ++DL P +E+ +
Sbjct: 127 LPVTCLGACDRAPVMMVGDDLHQDLDPAEIEKAL 160
>gi|257467681|ref|ZP_05631777.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
ulcerans ATCC 49185]
gi|317061975|ref|ZP_07926460.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
gi|313687651|gb|EFS24486.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
Length = 164
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ IS + +S++I +L +AQE G++ E +A L++ +V + +FY
Sbjct: 10 KELKSYISTFED--KKSSLIIVLHKAQEIFGYIPAEVQEFIAEELEVPVAKVYGVVSFYN 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F + P G + + VC T C +RG K++E +++ + DG S + + C GA
Sbjct: 68 FFSMEPKG-KYQISVCTGTACYVRGAGKVLESLEKELNIEVGGVTKDGLFSLDCLRCVGA 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C AP+V++GK+ + + P ++++I+ + +
Sbjct: 127 CGLAPVVIVGKEVHGKVKPTDVKKLIEEYMEKE 159
>gi|325972138|ref|YP_004248329.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
Buddy]
gi|324027376|gb|ADY14135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
Buddy]
Length = 157
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F+FS ++ E ++ +I +L + Q+++G++SR A ++VA LD+
Sbjct: 6 EFTFSPALVSFIKEWKTK------PGNLIMVLHKVQQEQGYISREAADLVAAQLDVPLAT 59
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + +FY F+L + ++QVC T C L+G + LI+ ++H DG S
Sbjct: 60 IWGVVSFYHFFKL-TKPGKHNIQVCLGTACYLKGAQPLIDEIDKQLHLPVGAVTEDGNFS 118
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ V C G C AP++ +G + + +T +++ II F
Sbjct: 119 LDAVRCVGCCGLAPVMTVGGEVFGKVTKDQISGIIAKFR 157
>gi|307823548|ref|ZP_07653777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
tundripaludum SV96]
gi|307735533|gb|EFO06381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
tundripaludum SV96]
Length = 158
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S + V E+I+ A++P+L Q+ G++ ++ +A L ++ V +
Sbjct: 4 SGSTQSTVQEIIAALKD--KPGALLPILHGIQDAMGYIPAESVPYIATALSLSRAEVHGV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F + +C C G KL E ++K+ +DG S E V
Sbjct: 62 ISFYHYF-RDTPPGVQTIHLCRAESCQSMGGRKLEEHVKSKLGIDFHETTADGKFSLEPV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C +P + IGK+ Y ++ + + +I+
Sbjct: 121 YCLGNCACSPAMQIGKEIYGRVSADSFDAVINN 153
>gi|134299711|ref|YP_001113207.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
gi|134052411|gb|ABO50382.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
Length = 160
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
SF + + E +RY ++IP+L AQE G++S ++ +A L++ Y +V
Sbjct: 7 SFKDPKQKALKETFARY--QGTSGSLIPILQEAQEIYGYLSGEVMQQIARELNIPYSKVY 64
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY QF L P G R +++C T C ++G ++L+E R + D + E
Sbjct: 65 GVVTFYAQFHLRPRG-RNIIRICTGTACHVKGADRLLETVREATGLEGEGTTEDLRYTLE 123
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP +MI +DTY LTP + I+ +
Sbjct: 124 TVACLGACGLAPAMMINEDTYGRLTPVKALNILKQYQ 160
>gi|323702071|ref|ZP_08113739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323532953|gb|EGB22824.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 162
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
V ++I + + +I +L Q + G++ + + +A L ++ VL +ATFY Q
Sbjct: 10 KVQQIIDAH--EGKVAHLIAILQETQAEYGYLPKEILTYIATALGVSPATVLGVATFYAQ 67
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGA 143
F L P G + ++VC T C +RG E ++ R ++ P D + E V C GA
Sbjct: 68 FSLIPKG-KYVIRVCDGTACHVRGSEPIMMAIRKELGISPDNPTTDDLMFTVETVSCLGA 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP+V+ ++ + +TP+ + EII+ +
Sbjct: 127 CGLAPVVVAHEEVHGQMTPQGIVEIINKLAQ 157
>gi|253583177|ref|ZP_04860375.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
27725]
gi|251833749|gb|EES62312.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
27725]
Length = 170
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ IS + +SA+I +L +AQE G++ E +A L++ +V + +FY
Sbjct: 16 KELKSYISTFED--KKSALIIVLHKAQEIFGYIPAEVQEFIAEELEIPVAKVYGVVSFYN 73
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F + P G + + VC T C +RG K++E +++ DG S + + C GA
Sbjct: 74 FFSMEPKG-KYQISVCTGTACYVRGAGKVLENLEKELNIGVGGVTKDGLFSLDCLRCVGA 132
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C AP+V++GK+ + + P ++++I+ + +
Sbjct: 133 CGLAPVVIVGKEVHGKVKPTDIKKLIETYMEKE 165
>gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG
[Herminiimonas arsenicoxydans]
gi|133740484|emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas
arsenicoxydans]
Length = 159
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V +I+ A++P+L Q G++ + +A+ L+++ V + T+
Sbjct: 8 DMAAVESIIAS--RKEMPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVHGVITY 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F + +Q+C C RGCE L++ + + DG S E V C
Sbjct: 66 YHFF-RQHPAGKHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEVVYCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G C + P + I D Y ++ E+ +I A
Sbjct: 125 GQCASGPAIQIDDDLYARVSKEKFNNLIQA 154
>gi|312144097|ref|YP_003995543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
'sapolanicus']
gi|311904748|gb|ADQ15189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
'sapolanicus']
Length = 147
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + ++I + +++ L Q+ G++ IE +A +++ + +F
Sbjct: 3 NEKIIEDII------FEEGSLLEELHNVQDTYGYIPENEIENLAEKFNLSRANAYGVISF 56
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+ P G + +++C + C L E L++ ++ + + + D + E VEC
Sbjct: 57 YSMLYTEPTG-KYIIRICDSISCHLNESESLLKAVKSYLGIENNETSKDKKFTLEVVECL 115
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++MI YE LT + EI++
Sbjct: 116 GHCAEGPVMMINDQIYEKLTKTKAIEILNNC 146
>gi|189485527|ref|YP_001956468.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
[uncultured Termite group 1 bacterium phylotype Rs-D17]
gi|170287486|dbj|BAG14007.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
[uncultured Termite group 1 bacterium phylotype Rs-D17]
Length = 157
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+S +IP+L QE+ ++ + + +A L+ + V +ATF++ F L G R +++
Sbjct: 22 KSKLIPILQAVQEEYKYLPKEILVFIALSLNTSPAGVYGVATFFSHFTLKHKG-RHIIKI 80
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
C C ++ LI +NK+ K D + E V C GAC AP+ +I +D Y
Sbjct: 81 CDGIACHVKKSNSLINALKNKLGLKEAEYSTKDVFFTIETVSCLGACGLAPVFLIDEDIY 140
Query: 158 EDLTPERLEEIIDAF 172
+TP++ E+ID
Sbjct: 141 GQMTPDKAVELIDKI 155
>gi|154505521|ref|ZP_02042259.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
gi|153794179|gb|EDN76599.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
Length = 164
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 4/163 (2%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
Q + + +E+++ + Q ++IP++ Q + ++ + VA + ++
Sbjct: 3 QKEGYMLDQSYYDKADEIVASH--GAYQESLIPIIQDIQSEYRYLPPELLSYVAEKIGIS 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSD 130
+ +ATFY F P G + ++VC T C +R ++E +++ + D
Sbjct: 61 EAKAYSVATFYENFSFEPKG-KYVIKVCNGTACHVRKSIPILERLYSELGISGEKNTTDD 119
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ E V C GAC AP++ + Y +TP+ E+I
Sbjct: 120 MLFTVETVSCLGACGLAPVLTVNDTVYPKMTPDAAAELIHELR 162
>gi|145298720|ref|YP_001141561.1| NADH dehydrogenase subunit E [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851492|gb|ABO89813.1| NADH dehydrogenase I, E subunit [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 188
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
F S+ + Y R +A I L Q+ GWV AI +A
Sbjct: 24 DGPVPGPTDGFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIA 81
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
L + V +ATFY+Q PVG R ++VC + C + G E L+ + + P
Sbjct: 82 TELGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEGLLAGLKEVMDLAPG 140
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
++DG + V C G C P +MI DTY L L + ++A+
Sbjct: 141 QTSADGRFTLLPVCCLGNCDKGPALMIDDDTYGGLDAATLIKTLEAY 187
>gi|150391801|ref|YP_001321850.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
gi|149951663|gb|ABR50191.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
Length = 160
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+EE + VI + ++P+L AQ+ G++ + ++ +++ +
Sbjct: 6 LTEEKFQRLQMVIEE--QKGKKGPLMPVLHEAQKIFGYIPLEVQKRISEEIEIPLSEIYG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY+QF L P G + VC T C ++G + +I+ KP + DG S
Sbjct: 64 VITFYSQFSLEPKGD-YVIGVCMGTACYVKGSQPIIDKISELTGTKPGGNSEDGRFSLVA 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC AP++ + +D Y L E + I++ +
Sbjct: 123 TRCIGACGLAPVLTVNEDVYGRLKLEDIPGIVEKYQ 158
>gi|289523905|ref|ZP_06440759.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502561|gb|EFD23725.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 177
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ +++++ +IPLL R QE G++ + A+ ++ +L + Y +V +ATF
Sbjct: 29 DIKELEDIVNK--AKEENLGLIPLLQRTQEVIGYLPKEALVALSEMLHIPYSKVFGVATF 86
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L+P G R +Q C T C ++G ++ V K+ P D ++E V C
Sbjct: 87 YAQFHLTPRG-RHVIQQCDGTACHVKGGPRIRRVIEEKLGISPGETTEDLKATYEIVYCL 145
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G+C AP MI LT E+++ I+D+
Sbjct: 146 GSCGLAPAAMIDGKVIGRLTQEKMKRILDSM 176
>gi|239905978|ref|YP_002952717.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
gi|239795842|dbj|BAH74831.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
Length = 166
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + +++ + A + ++ Q G++ A+ A +L M + + +A
Sbjct: 6 PELQADLRRLVTA--VDNPREAAVDVMYALQHHYGYLCDEAMHRAAEVLGMTTLELESLA 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY PVG R + VC + C + + + + + P DG +
Sbjct: 64 TFYDYLYRRPVG-RYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAA 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
C G C NAP ++I Y+ LTPE ++ +I G + +R
Sbjct: 123 CVGNCHNAPTMLINGRFYDRLTPEAVDAVIAELRAGTEEPVR 164
>gi|53804526|ref|YP_113817.1| NADH dehydrogenase subunit E [Methylococcus capsulatus str. Bath]
gi|53758287|gb|AAU92578.1| NADH dehydrogenase I, E subunit [Methylococcus capsulatus str.
Bath]
Length = 157
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ + + + +P +A I L Q GW+S ++ +A +L M+ +
Sbjct: 1 MTLTSDEIQAILREAGHFP--HPSAAAIEALNIVQRSHGWISDELLQEIAELLGMSPAEL 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
IATFY PVG R + C + C + G E K+ +G +
Sbjct: 59 DSIATFYNLIYRRPVGRR-VIHYCNSVSCWMLGAEDNRRHLSEKLGIAVGETTGNGEYTL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ C GAC AP++MIG +T+ ++ P RL++I+
Sbjct: 118 LPIVCLGACDKAPVLMIGDETHFNVDPARLDDIL 151
>gi|171914656|ref|ZP_02930126.1| NADH dehydrogenase (ubiquinone), E chain [Verrucomicrobium spinosum
DSM 4136]
Length = 166
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++EVI+ YP S +SAV+PLL Q + +++ A+ VA L + I+VLE+ TFY
Sbjct: 10 EAKIDEVITHYPVS-KRSAVLPLLHLMQHEYRYITDDAVNWVAAKLGLQPIQVLEVVTFY 68
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--------HQKPLHRNSDGTLS 134
F + H++VC T C + G +L+E H P+ ++DG S
Sbjct: 69 PGF-RQSAPGKFHIRVCRTLSCAMAGSYELMESLCKAADIDRSHVDHHHPIAVSADGKYS 127
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E EC +C P+ M+ D +E + P+ E++ +
Sbjct: 128 IEFAECLASCGFGPVCMVEDDFHESVKPQAAAELLKQYQ 166
>gi|330830048|ref|YP_004393000.1| NADH dehydrogenase I subunit E [Aeromonas veronii B565]
gi|328805184|gb|AEB50383.1| NADH dehydrogenase I, E subunit [Aeromonas veronii B565]
Length = 180
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F S+ + Y R +A I L Q+ GWV AI +A L +
Sbjct: 24 DDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPAS 81
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++VC + C + G E+L+ + ++ P DG
Sbjct: 82 DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEELMAGLKEVMNLGPGQTTPDGRF 140
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V C G C P +MI DTY L P L + ++A+
Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPVTLLKTLEAY 179
>gi|134299513|ref|YP_001113009.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
gi|134052213|gb|ABO50184.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
Length = 163
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V ++I + S +I +L Q G++ + + +A + ++ VL +ATFY QF
Sbjct: 12 VQKIIDSH--EGKVSHLIGILQEVQSDYGYLPKEVLTYIATSMGISPATVLGVATFYAQF 69
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSDGTLSWEEVECQGAC 144
L P G + ++VC T C +RG E ++ R ++ D + E V C GAC
Sbjct: 70 SLIPKG-KYVIRVCDGTACHVRGSEPIMMALRKELGINTEKPTTDDLMFTLETVSCLGAC 128
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AP+V+ ++ + +TP+ + EI+ +
Sbjct: 129 GLAPVVVADEEVHGQMTPDGILEIVRKLA 157
>gi|325660924|ref|ZP_08149551.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331085361|ref|ZP_08334447.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472431|gb|EGC75642.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330408144|gb|EGG87634.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 163
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F ++E + EVI + Q A++ +L +AQE G+V ++++ +D+ +
Sbjct: 8 PFQGTKEQETVLREVIEK--RKSEQGALMAVLQQAQEIYGYVPTEVQTIISDEMDIPLHK 65
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ E+ FY QF LSP G + V +C T C ++G + + +DG S
Sbjct: 66 IEEVVDFYPQFTLSPKG-KYQVSICLGTACFVKGAGDVYNKLTEVLGIGGGECTADGKFS 124
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP++M+ D Y + E +EEI+ +
Sbjct: 125 LDASRCIGACGMAPILMVNDDVYNHVKAEDVEEILAKY 162
>gi|160936106|ref|ZP_02083479.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
BAA-613]
gi|158440916|gb|EDP18640.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + E+ + Y + ++I +L AQ G++ +V+A+ LD++ V +
Sbjct: 15 EALLKRIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPLEVQKVIADALDISLAEVSGVV 72
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F P G ++VC T C +RG +K++E + + + +D ++E
Sbjct: 73 TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERLKELLDVEIGETTADRRFTFEVAR 131
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C GAC AP + I Y+ + P++LE+I++ + +G
Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEG 169
>gi|160878250|ref|YP_001557218.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
phytofermentans ISDg]
gi|160426916|gb|ABX40479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
phytofermentans ISDg]
Length = 161
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ ++ +++ + +S VI ++ Q+ ++ + +A L ++ ++ +A
Sbjct: 4 QDEKGLIDNILTAH--DYNKSHVIAIMQEVQKVYRYLPEEVLCYIAEKLKLSEAKIYGVA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEV 138
TFY F L P G + +++C T C +R ++E R + + D + E V
Sbjct: 62 TFYENFSLEPKG-KYVIKICDGTACHVRKSIPILEEFRKVLGVTEKNPTTDDMIFTVETV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP+ + + +TPE+ + +I+
Sbjct: 121 SCLGACGLAPVCTVNDVVHAAMTPEKAKALIEQLRE 156
>gi|21672440|ref|NP_660507.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008858|sp|Q8K9Y4|NUOE_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 168
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M ++ +E ++F+ + + + Y SR S I L Q++ GWV A
Sbjct: 1 MDKKKKIKEIS--TTFTLTTFEINEIEKQKKYYENSR--SVSIEALKIVQKKRGWVCDQA 56
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +ANIL++ V +ATFY+Q PVG R ++ C + C L G EK+ + + +
Sbjct: 57 IIEIANILNLNPSEVESVATFYSQIYRQPVG-RNVIRYCDSVVCYLTGYEKIKKFLEDYL 115
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
K + DG + V C G C AP +MI +D Y L P+ + +++ +
Sbjct: 116 FIKIGNTTVDGRFTLLPVCCLGNCDKAPTIMINEDLYSHLNPDLIPNLLELYK 168
>gi|118475092|ref|YP_891365.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
fetus subsp. fetus 82-40]
gi|118414318|gb|ABK82738.1| hydrogenosomal NADH dehydrogenase 24 kda subunit [Campylobacter
fetus subsp. fetus 82-40]
Length = 163
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F+ E +NE+ + R + V+P L Q +G++ + + L + +
Sbjct: 2 KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGFIDAKDVLYLEKTLGIRSMF 59
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
E FY+ F G + ++ C T C LRG ++LI+ ++ + K +SDG S
Sbjct: 60 YAEAIGFYSMFNQKSKG-KFELKFCKTITCKLRGSDELIKFTQDILGIKMGETSSDGLFS 118
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
E EC G C AP ++ + + L + +I+
Sbjct: 119 LGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKEN 160
>gi|222053574|ref|YP_002535936.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
gi|221562863|gb|ACM18835.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
Length = 168
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
N+VI ++ ++P+L QE+ G+V + I++VA L++ ++ + TF
Sbjct: 15 DLSAANQVIDKFLTL--PGNLMPVLQGIQEEYGYVPKPTIDLVAERLNVYPSQIYGVLTF 72
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y QF L P G + ++VC T C ++G E++++ +K+H D ++E+V C
Sbjct: 73 YAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETTPDLRFTFEKVACL 131
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP+ M+ DT+ +T +++EEII +
Sbjct: 132 GACGMAPLAMVNDDTFGKMTVQKVEEIIADY 162
>gi|78224541|ref|YP_386288.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
metallireducens GS-15]
gi|78195796|gb|ABB33563.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
Length = 173
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
N VI +Y ++P+L Q++ G+V + I++VA L++ ++ + TFY QF
Sbjct: 24 ANHVIDKYLTL--PGNLMPVLQGIQDEYGYVPKPTIDLVAERLNVYPSQIFGVLTFYAQF 81
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L P G R ++VC T C ++G +++E +K+ + D ++E+V C GAC
Sbjct: 82 HLKPRG-RYIIRVCVGTACHVQGAPRIVETFFDKLGISHAETSPDLRYTFEKVACLGACG 140
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
AP+ M+ DT+ +T +++EEII +
Sbjct: 141 MAPLAMVNDDTFGKMTVQKVEEIIAEY 167
>gi|160902192|ref|YP_001567773.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
SJ95]
gi|160359836|gb|ABX31450.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
SJ95]
Length = 169
Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+S +I +L + QE G++ ++VA L + +V + TFY F P G +
Sbjct: 26 EEERRSLLIEVLHKVQENLGYIPNEVQKLVAKKLKIPSSQVYGVVTFYNFFSTKPKG-KY 84
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC T C + G ++++ + ++ + DG S V C GAC AP+V IG+
Sbjct: 85 PISVCLGTACYVGGANEILDEFKKILNVEEEEVTEDGLFSIHPVRCLGACGLAPVVKIGE 144
Query: 155 DTYEDLTPERLEEIIDAFSTGQGD 178
Y L + II + + +
Sbjct: 145 KVYGRLKINDVRRIIRDYRAKEKN 168
>gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
aciditrophicus SB]
gi|85721023|gb|ABC75966.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
aciditrophicus SB]
Length = 173
Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ E+IS+Y +SA + +L QE+ ++ + A+ +V++ L + R+ EIATFY
Sbjct: 22 KIREIISKY--DGEKSAAVAVLQDLQEEFRYLPKEALTIVSDELQVPLSRIYEIATFYNV 79
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G + ++VC T C ++G L+ ++ D + EEV C G C
Sbjct: 80 FSLKPRG-KYLIEVCAGTACHVQGGFNLMNRLERNLNISCGETTEDAMFTLEEVRCLGCC 138
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AP+V I + + LT + + I+ +
Sbjct: 139 SLAPVVRIDGNIHPYLTQDEIPGILKNYRK 168
>gi|291285961|ref|YP_003502777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
acetiphilus DSM 12809]
gi|290883121|gb|ADD66821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
acetiphilus DSM 12809]
Length = 168
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+E+ +Y A IP+L + Q+ G++ +E +A+ L+M+ ++ + TFY QF
Sbjct: 18 DEICEQYKD--WAGATIPVLQKTQDAYGFLFPELVERIADNLNMSPHQIYGVITFYAQFY 75
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P G + ++VC T C ++G ++ E+ + + + D + EEV C GAC
Sbjct: 76 TKPRG-KYIIRVCRGTACHVQGSGRISEIVKEEFKISNGETSGDLKFTLEEVSCIGACGM 134
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
AP++MI TY +L PE +I ++
Sbjct: 135 APVIMINNKTYGNLKPEDARKIFREYAN 162
>gi|212712279|ref|ZP_03320407.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
30120]
gi|212685025|gb|EEB44553.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
30120]
Length = 179
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F +E + Y +R +A I L Q+ GWV AI +A++L + V
Sbjct: 25 FVLTEHERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADVLGIPASDV 82
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG R ++ C + C + G + L +++ +P +DG +
Sbjct: 83 EGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTTADGRFTL 141
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C P +MI +DT+ + PE ++++++ +
Sbjct: 142 LPTCCLGNCDKGPTMMIDEDTHSYVQPENIQKLLEQY 178
>gi|187477323|ref|YP_785347.1| formate dehydrogenase subunit gamma [Bordetella avium 197N]
gi|115421909|emb|CAJ48429.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella avium
197N]
Length = 155
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +R+ A++PLL QE+ G + + V+A L ++ V + TFY
Sbjct: 6 IAVAQRLAARFAD--QPGALLPLLHALQEELGCIPPETVGVLAEALSLSRAEVHGVITFY 63
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F+ P R +Q+C C G + L + ++ R++DG + E C G
Sbjct: 64 PHFRTEP-AGRHVLQICRAEACQAMGGDALAAHAQARLGCDFHARSADGAFTLEPAYCLG 122
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C +P +M+ + +TP RL+ +ID
Sbjct: 123 LCAQSPALMLDGRPHARMTPARLDRLIDQ 151
>gi|226953549|ref|ZP_03824013.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
gi|262373372|ref|ZP_06066651.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
gi|294649463|ref|ZP_06726887.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
ATCC 19194]
gi|226835727|gb|EEH68110.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
gi|262313397|gb|EEY94482.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
gi|292824633|gb|EFF83412.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
ATCC 19194]
Length = 169
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + + I YP ++A + L Q + GWV A + +A +L ++ +
Sbjct: 17 LTADEIHEIEHHIGHYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + +DG +
Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI +DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVDVSSVKQLLEKY 168
>gi|310658967|ref|YP_003936688.1| hyma protein [Clostridium sticklandii DSM 519]
gi|308825745|emb|CBH21783.1| HymA protein [Clostridium sticklandii]
Length = 157
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F++E+ ++ VI+++ Q A++P+L A++ G++S E ++ LD+ +
Sbjct: 6 FTQENFARLDLVIAQH--KGEQGALMPVLYEAKKIFGFISIDIQERISKGLDIPLSEIYG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ F G + VC T C ++G +K+I+ K++ + SDG S
Sbjct: 64 VASFYSTFSDKQKGE-NIIAVCLGTACYVKGSQKIIDKISKKLNIEVGDTTSDGKFSLVP 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+V I D Y + ++ I+ +
Sbjct: 123 ARCVGACSLAPVVTINADVYGKAKLDDIDSILSNY 157
>gi|253997400|ref|YP_003049464.1| formate dehydrogenase subunit gamma [Methylotenera mobilis JLW8]
gi|253984079|gb|ACT48937.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera
mobilis JLW8]
Length = 160
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++ ++ +I+ + A++PLL Q+ G+V AA ++ L ++ V +
Sbjct: 9 EDTDAVISRLIAEH--QHRPGALMPLLHAIQDNIGYVPEAAYPQISKALALSVAEVHGVV 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ R +Q+C C G E L + ++ +D ++ E V
Sbjct: 67 TFYHHFRT-HKPGRNVMQICRAESCQAMGSEALEAHAKKCLNIDYHQTTADDAVTLEAVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C +P VM+ + Y ++P L+ +I
Sbjct: 126 CLGNCALSPSVMMNDEIYGRVSPSDLDALIAEARA 160
>gi|218780115|ref|YP_002431433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218761499|gb|ACL03965.1| Putative NADH:ubiquinone oxidoreductase 24 kD subunit, NuoE
[Desulfatibacillum alkenivorans AK-01]
Length = 154
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +I YP +S V +L QE G++S ++ + + + +ATFY F
Sbjct: 7 IESIIDHYP-GVQESMVF-ILQDIQEAFGYISLENMQAACDHVGVPLTHAYSMATFYKSF 64
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+L PVG + VC T C L+G ++++ +++ D + E V C GAC
Sbjct: 65 RLEPVGE-HEIHVCLGTACHLKGGPRIVDELERRLNVHAGATTEDMRYTLETVNCLGACA 123
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AP+V++ K+ +T +++++ + + +
Sbjct: 124 LAPVVVVDKEYVPKVTAKKIQKTLKTITDNE 154
>gi|307297598|ref|ZP_07577404.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306916858|gb|EFN47240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 164
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 28 EVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ + Y S +I +L +AQE G++S + V+ LD+ +V + TFY F
Sbjct: 14 KELDEYIDSVKGNTGVLINVLHKAQEIFGYLSEELQQHVSEKLDIPLSQVYGVVTFYNFF 73
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P G + ++VC T C ++G +K++E +++++ + SDG S V C GAC
Sbjct: 74 SMKPKG-KNQIKVCLGTACYVKGADKILERLQDELNVEMNEPTSDGLFSIHAVRCLGACS 132
Query: 146 NAPMVMIG-KDTYEDLTPERLEEIIDAFSTGQ 176
AP+V+IG D Y ++P+ + +I+D + +
Sbjct: 133 MAPVVLIGEDDYYGRVSPDEVSKILDKYRRAE 164
>gi|224368768|ref|YP_002602929.1| NuoE [Desulfobacterium autotrophicum HRM2]
gi|223691484|gb|ACN14767.1| NuoE [Desulfobacterium autotrophicum HRM2]
Length = 164
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
L + SE+ ++++I+ ++I +L +QE G++ I
Sbjct: 5 THPLHPDI--------SEDMWGKIDKIIAS--GKGIPGSLISVLRESQEVVGYLPSELIN 54
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+++ L + +V +ATFY+ F L+P G R ++VC T C ++G ++ I
Sbjct: 55 HISHGLVLPTSQVFGVATFYSFFSLTPKG-RHTIRVCTGTACYVKGIKEAIGRIHGTYGI 113
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
K D S E V C GAC AP++++ KD Y +T +++ I++ +
Sbjct: 114 KEGETTEDRKFSLEGVRCLGACGLAPVMIVDKDIYGQVTSDKVINILEKY 163
>gi|147678347|ref|YP_001212562.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
thermopropionicum SI]
gi|146274444|dbj|BAF60193.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
thermopropionicum SI]
Length = 162
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E + ++I +Y + +I +L RAQE G++ R A+ ++A L ++ V +
Sbjct: 11 DELTKQLEKIIDQY--RGQPTGLIQVLTRAQELIGYLPRWALIMIAEGLGLSLQEVYGVV 68
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L P G R + VC T C ++G + +++ R I KP D + E V
Sbjct: 69 TFYAFFSLIPRG-RHKISVCAGTACYVKGTKMVLKTLREAIGIKPGQTTPDSRFTLEIVR 127
Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFS 173
C GAC AP ++I KD + L PE++ I++ ++
Sbjct: 128 CIGACGLAPAMIIDGKDVHGRLEPEQIPAILEQYA 162
>gi|56387325|gb|AAV86074.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
27021]
Length = 158
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ ++++Y + +I +L QE+ ++ + A ++ L M+ ++ +ATFY F
Sbjct: 10 LDIILTKY--NHDACNIIAILQDTQEKYRYLPKEAFVYLSEKLGMSRAKIYSVATFYENF 67
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
L P G + +++C T C +R +++ R +++ + D + E V C GAC
Sbjct: 68 SLEPKG-KFVIKICDGTACHVRKSIPILDKLRKELNLSEAKTTTDDLIFTLETVSCLGAC 126
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AP + + Y +TPE+ E+++ F +
Sbjct: 127 GLAPAMTVNDKVYGSMTPEKAMELLNTFKEEK 158
>gi|323702076|ref|ZP_08113744.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323532958|gb|EGB22829.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 159
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
E ++ + ++Y + + +I +L QE G++ + + A L + V +AT
Sbjct: 10 EQDKKLDALFAQYKGN--PNGLIVVLAAIQEVHGYLPKDYLIKTAEELGVPLSDVYGVAT 67
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F L P G R V +C T C ++G ++ + ++ K + D S + V C
Sbjct: 68 FYAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQAMLEKEMGIKAGNTTEDRRFSLDLVRC 126
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP++ + + Y +T E++ EI+ +
Sbjct: 127 LGACGIAPVMTVNGEVYPRMTAEKVSEILAKY 158
>gi|310778427|ref|YP_003966760.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
gi|309747750|gb|ADO82412.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
Length = 162
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE ++E I Q A+I +L +AQE G++ + VA LD+ +V +
Sbjct: 9 EECFKQLDEFILN--LEDKQGALITVLHKAQEIFGYLPKEIQSFVAERLDLPLAKVYGVV 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY+ F ++P G + + VC T C +RG K++E + ++ + SDG S + +
Sbjct: 67 SFYSFFTMTPKG-KYPISVCMGTACYVRGAGKVLEDFQKQLGIEVGETTSDGIFSIDALR 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C GAC AP+V++G+D + + ++ I+D +
Sbjct: 126 CVGACGLAPVVLVGEDVFGKDEAKDVKTILDTYKA 160
>gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
testosteroni CNB-2]
gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
testosteroni CNB-2]
Length = 714
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 7 AEEEFQPSSFS--FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
QP + S E + ++R+ + ++ LL Q+ G++ RAA+ +
Sbjct: 3 HHPIAQPQESAPLLSPEQQDALTHCLARF--GQEPGGLLELLHSLQDALGFIPRAAVPAI 60
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A L+++ V + ++Y R +Q+C C RG + L + + +
Sbjct: 61 AEALNLSRAEVHGVVSYYPHL-REQPHGRTLIQICRAEACKSRGGDALFAHAQETLGCQA 119
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
++DG+++ E V C G C +P VM+ + + + +T +RL+ +++ + +T
Sbjct: 120 HGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 175
>gi|254520091|ref|ZP_05132147.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
gi|226913840|gb|EEH99041.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
Length = 173
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+S++I +L AQ G++ R E +A L++ +V + TFY+ F P G + + +
Sbjct: 37 ESSLISVLHHAQGLYGYLGREVQEYIAYRLNIPVSKVYGVITFYSYFSTEPKG-KYVISI 95
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C T C +RG ++E + + K +DG + + + C G+C AP+V++ Y
Sbjct: 96 CTGTACFVRGACDILEDFKKILGIKEGETTNDGLFTLDTLRCVGSCAIAPVVLVNDKVYG 155
Query: 159 DLTPERLEEIIDAFST 174
T ++ E+I+
Sbjct: 156 YFTKPQVNELINNLRE 171
>gi|71065154|ref|YP_263881.1| NADH dehydrogenase subunit E [Psychrobacter arcticus 273-4]
gi|71038139|gb|AAZ18447.1| NADH dehydrogenase I, E subunit [Psychrobacter arcticus 273-4]
Length = 169
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E ++E + YP ++A + L Q++ GWV A + +ANIL++ +
Sbjct: 17 LTAEEIAAIHEFMHHYP--HPRAASLDALKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ + PVG R + +C + C L G E L + ++ +D +
Sbjct: 75 VATFFNRIYRQPVG-RHVILICDSVACYLTGYEALAAELKAQLGIDYGQTTADKRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ C G C P V+I +DTY + PE + ++++
Sbjct: 134 ICCLGNCDKGPAVLINEDTYGPVQPEEVAQLLE 166
>gi|332652332|ref|ZP_08418077.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
gi|332517478|gb|EGJ47081.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
Length = 164
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
S V E+I+ Y + +I ++ Q + ++S +E++A L++ +V +ATF
Sbjct: 6 SLARVEEIINSY--GCQRHQLIAIMQDVQAEFKYLSPQVLELIAQKLNIGVAKVYSVATF 63
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
Y F L G + ++VC T C +R + + R + + ++DG + E V C
Sbjct: 64 YENFSLEAKG-KYIIKVCDGTACHVRKSQPIYNAIREYLELEDKQKTSADGLFTLETVAC 122
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP+V + + ++PE +++++ +
Sbjct: 123 LGACGLAPVVTVNDQVHSKMSPELAIDLLESLRKEE 158
>gi|254166690|ref|ZP_04873544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Aciduliprofundum boonei T469]
gi|289596481|ref|YP_003483177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
boonei T469]
gi|197624300|gb|EDY36861.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Aciduliprofundum boonei T469]
gi|289534268|gb|ADD08615.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
boonei T469]
Length = 149
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY
Sbjct: 2 EEKVLQIINKH--KNKDSKLLAILHDVQDEFGYIPEEAIKTIAKELGMKKGEVYDAASFY 59
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F+ P G + V +C C ++G E++IE + K DG +++ VE G
Sbjct: 60 SFFRFKPEG-KHEVMICDCIVCHIKGSERIIERIEKEFGVKMGETTKDGKFTFKIVEGLG 118
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
C ++P++MI Y DLTP+++ EI+
Sbjct: 119 HCEHSPVMMIDGKIYGDLTPDKVVEIL 145
>gi|298528320|ref|ZP_07015724.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511972|gb|EFI35874.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 173
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 3/170 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+ + F+P + + ++ +I AV +L R Q+ G++ ++
Sbjct: 6 THTDSSDYFRPMHSDITPDMWQDIDRIIQE--SLDIPGAVTQVLRRCQDLVGYLPVELLD 63
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+A +++ V +A+FY+ F L P G R ++VC T C ++G + ++ + H
Sbjct: 64 YIARGMNIPASEVFGVASFYSLFSLKPRG-RNIIRVCTGTACHVKGADLVMRRLKQTYHL 122
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
D + E V C GAC AP + I + + +TP++ +++ +
Sbjct: 123 DDGSTTPDRRFTLESVRCMGACGLAPAMTINQTAHGHITPDQALKLLQEY 172
>gi|24372604|ref|NP_716646.1| NADH dehydrogenase subunit E [Shewanella oneidensis MR-1]
gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subunit [Shewanella oneidensis MR-1]
Length = 180
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
S F S+ + Y R +A I L Q+ GWV AI +A L +
Sbjct: 24 SDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIAAELGIPAS 81
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
V +ATFY+Q PVG R ++VC + C + G E+L+ + ++ P DG
Sbjct: 82 DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLMAGLKEVMNLAPGQTTPDGRF 140
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V C G C P +MI DTY L P L + ++A+
Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPITLLKTLEAY 179
>gi|269792084|ref|YP_003316988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099719|gb|ACZ18706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 156
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E++ RYP R ++ L Q + V R A+E + + RV +ATFY
Sbjct: 8 DRLKEILHRYP--RHPRFLLAFLQDVQREFKHVPREAMEASSERFMVPMSRVYSVATFYR 65
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
L P G + ++VC T C LRG +++E + + DG S E V C GA
Sbjct: 66 ALSLVPRGRK-TIKVCMGTACHLRGAPRVLETIEEALQVRCGGTTQDGEFSVEAVNCLGA 124
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C AP+VM+ Y +T ++ E+++
Sbjct: 125 CALAPVVMVEDRCYGSMTAAKVREMLEE 152
>gi|221090843|ref|XP_002168613.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
2, mitochondrial [Hydra magnipapillata]
Length = 101
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V + K+ P D + EVEC GACVNAPMV I + YEDL P + EII++
Sbjct: 1 MSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESL 60
Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
+ +G +PGP+ R +S PAGGLTSL + G K +
Sbjct: 61 A--KGIIPKPGPRSGRFASEPAGGLTSLTS-PPRGPGFKLQSG 100
>gi|239627949|ref|ZP_04670980.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47_FAA]
gi|239518095|gb|EEQ57961.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47FAA]
Length = 171
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + E+ + Y + ++I +L AQ G++ +V+A+ L++ V +
Sbjct: 15 EALLKRIGELAAEY--RGREGSLIQVLHMAQGIYGYLPLEVQKVIADALEVPLAEVSGVV 72
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F P G ++VC T C +RG +K++E + + + +D ++E
Sbjct: 73 TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTADRKFTFEVAR 131
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C GAC AP + I Y+ + P++LE+I++ + +G
Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEG 169
>gi|114567217|ref|YP_754371.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114338152|gb|ABI69000.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 166
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE+ ++IS +P + +I ++ ++ R+A+E+ A + + + +V +A
Sbjct: 7 EENIEGFRKIISGFPGEKRY--IIAIMHELSRCYRYLPRSALELTAEYVGVPFSQVYSMA 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L P G R +++VC T C ++G L++ + P +D S E V
Sbjct: 65 TFYRAFSLQPRG-RFNIKVCDGTTCHIKGSNILLDEIHKNLGIGPGETTADREFSLETVN 123
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C GAC AP +++ + Y + L+EII + G
Sbjct: 124 CIGACAIAPALLVNERVYPRVNAAALKEIIKEYRGG 159
>gi|188995983|ref|YP_001930234.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931050|gb|ACD65680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 156
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
++ IPLL Q G++ +E++A L+++ + + TFY+ F+ +
Sbjct: 12 KNKKNGFIPLLHSIQNHYGYIPIEFVEILAKRLNLSKAEIWGVITFYSDFKTK-KPGKNI 70
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
++VC + C+ G ++ + ++K++ DG + EEV C G C P VMI
Sbjct: 71 IKVCRSESCIANGGLEIQKYLKSKLNINFKETTEDGKFTLEEVFCFGNCGCGPSVMINNK 130
Query: 156 TYEDLTPERLEEIIDAFSTGQGD 178
Y ++ ++LEE++ S + +
Sbjct: 131 LYGRVSLKKLEELLKNLSGDKNE 153
>gi|114566556|ref|YP_753710.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337491|gb|ABI68339.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 148
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
++IS+Y +I Q + ++ AI V A + + + +ATFY+ +
Sbjct: 5 EDIISKY--QDLPGGIIEAYHALQREYSYIPEDAIRVAAEVFGIPTAKAWGVATFYSYLK 62
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ G + +++C + PC + G ++I ++ K DG + E EC G C
Sbjct: 63 VGKRG-KNVIRICESAPCHVAGAAEVIAALEKELGIKMGETTPDGKFTLELCECVGQCQA 121
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
P++ + Y D+TPE++ ++ +
Sbjct: 122 TPVITVNSKPYGDMTPEKVSGVLAEYR 148
>gi|93005406|ref|YP_579843.1| NADH dehydrogenase subunit E [Psychrobacter cryohalolentis K5]
gi|92393084|gb|ABE74359.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter
cryohalolentis K5]
Length = 169
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E ++E + YP ++A + L Q++ GWV A + +ANIL++ +
Sbjct: 17 LTAEEIAAIHEFMHHYP--HPRAASLDSLKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ + PVG R + VC + C L G E L ++++ +DG +
Sbjct: 75 VATFFNRIYRQPVG-RHVILVCDSVACYLTGYEALAAELKSQLGINYGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ C G C P V+I +DTY + PE + ++++
Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQPEEVAQLLE 166
>gi|225405664|ref|ZP_03760853.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
DSM 15981]
gi|225042809|gb|EEG53055.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
DSM 15981]
Length = 170
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E+ + Y + ++I +L AQ G++ +V+A+ LD+ V + TFY
Sbjct: 20 LARIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPIEVQKVIADTLDIPLAEVAGVVTFY 77
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F P G R ++VC T C +RG +K++E + + + D ++E C G
Sbjct: 78 SFFSTQPRG-RHTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTKDRLFTFEVARCIG 136
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP + I Y+ + P++LE+I+ +
Sbjct: 137 ACGLAPAMSIDDQVYKQVNPDKLEQILKRY 166
>gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Hahella chejuensis KCTC 2396]
gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Hahella chejuensis KCTC 2396]
Length = 611
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++A + + + Y + ++ +L + Q++ + A+ ++A + + V +
Sbjct: 2 DNDNATLIKQACADYDNDPRR--MMDILWQVQDKLRCIDGDAMSLIAALTGTYRVEVEGV 59
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F G +++C G + + E + + +P ++DG S E
Sbjct: 60 VSFYAFFSDKRKGDI-TIRLCDDIVDRHAGAQAVAEAFSDALGIQPGETSADGAFSLEFT 118
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
C G C AP V+I LTP +++ I+ + G D +S P
Sbjct: 119 PCIGMCDQAPAVLINDVVVTRLTPAKVKNILRTLRKTKDPQTLIGKTGDGANSHPL 174
>gi|325262542|ref|ZP_08129279.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
gi|324032374|gb|EGB93652.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
Length = 157
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+I+ + Q+++IP++ Q + ++ + VA L + +
Sbjct: 2 LDQTYYDKADEIIASH--GAEQASLIPIIQDIQTEYRYLPPELLSYVAGKLGINEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R +++ +++ K D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILDRLYSELGLSKEKATTDDMLFTLE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP++ + Y +TP+ ++I
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDTAADLIRELR 155
>gi|325290780|ref|YP_004266961.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
gi|324966181|gb|ADY56960.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
Length = 161
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 25 WVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+E++ ++ +I +L +AQE G +S + V++ L++ V +ATFY+
Sbjct: 13 KKDELLGMIAENKKEPGNLITVLQKAQEIYGHLSEEIMRVISEKLEIPAAEVFGVATFYS 72
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF+ +P+G R ++VC T C +RG ++ + K DG + E V C GA
Sbjct: 73 QFRFTPMG-RNVIRVCMGTACHVRGALNVLRTIERGLGIKAGETTQDGRFTLETVACIGA 131
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP++ I Y ++TP+ + + +D +
Sbjct: 132 CGLAPVISINNMVYGNMTPQAVMQTLDKY 160
>gi|299771416|ref|YP_003733442.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
gi|298701504|gb|ADI92069.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
Length = 169
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + I YP ++A + L Q + GWV A + +A +L M+ +
Sbjct: 17 LTAEEIHDIEHHIGHYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + DG +
Sbjct: 75 VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI +DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168
>gi|39995451|ref|NP_951402.1| NADH dehydrogenase I subunit E [Geobacter sulfurreducens PCA]
gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
gi|298504450|gb|ADI83173.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
Length = 173
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
N VI +Y ++P+L Q++ G+V R I++VA L++ ++ + TFY QF
Sbjct: 24 ANHVIDKYLTL--PGNLMPVLQGIQDEYGYVPRPTIDLVAERLNVYPSQIFGVLTFYAQF 81
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L P G R ++VC T C ++G ++++ K+ D ++E+V C GAC
Sbjct: 82 HLKPRG-RFIIRVCVGTACHVQGAPRIVDTFFEKLGIGHAETTPDLRYTFEKVACLGACG 140
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
AP+ M+ DT+ +T +++EEII +
Sbjct: 141 MAPLAMVNDDTFGKMTVQKVEEIIAEY 167
>gi|283850903|ref|ZP_06368189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
FW1012B]
gi|283573826|gb|EFC21800.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
FW1012B]
Length = 166
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
R + A I ++ Q G++ A+E A +L M + + +ATFY PVG R
Sbjct: 18 AERTREAAIDVMYALQRHYGYLCDEAMEYAARLLGMTTLELESLATFYDFLYRRPVG-RY 76
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC + C + + + + + P DG + C G C NAP ++I
Sbjct: 77 VIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAACIGNCHNAPTMLING 136
Query: 155 DTYEDLTPERLEEIIDAFST 174
Y+ L PE++ I+D
Sbjct: 137 RFYDRLHPEKINAILDELRA 156
>gi|197301315|ref|ZP_03166400.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
29176]
gi|197299633|gb|EDY34148.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
29176]
Length = 158
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ +E+IS++ +++IP++ Q + ++ + VA L + +
Sbjct: 2 LDQTYYKKADEIISQH--GLEPASLIPIIQDIQSEYRYLPPELLRYVAKKLGINEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R ++E +++ + D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSIPILERLYSELGLSEEKATTDDMLFTLE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
V C GAC AP++ + Y +TP+ E+I +
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPGMTPDAAAELIHELRGAE 158
>gi|119510368|ref|ZP_01629503.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
gi|119465005|gb|EAW45907.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
Length = 179
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ ++ I RY Q A+I +L +AQE G++ + + +A+ L + V +A
Sbjct: 24 DKRLKMLSATIKRY--QYQQDALIEILHKAQELFGYLKKDVLVYIAHQLKLPPSTVYGVA 81
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P+G R VC T C ++G E+++ N IH +P ++DG +S
Sbjct: 82 TFYHFFSLAPIG-RHSCMVCTGTACYVKGAEEILNSLENSIHIRPGETSADGQISLLTAR 140
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA-FSTG 175
C G C AP+V+ D TPE + + I G
Sbjct: 141 CLGPCGIAPVVVFDDTVLGDQTPESVGDRIKGWLQNG 177
>gi|51894342|ref|YP_077033.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
thermophilum IAM 14863]
gi|51858031|dbj|BAD42189.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
thermophilum IAM 14863]
Length = 186
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Query: 28 EVISRYPPSRCQSA--VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ + SA +I +L +AQE G++ VA L + V + TFY F
Sbjct: 18 AELDAFIQDGRSSADHLIAVLHKAQEIFGFLPEEVQRHVAAALHVPPSEVYGVVTFYNYF 77
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L+PVG + + VC T C ++G +L+ + ++ +P DG S E C GAC
Sbjct: 78 TLTPVG-KYPINVCMGTACYVQGAGRLLSLFERELGIQPGQVTPDGLFSLEVCRCLGACG 136
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AP+V + + + LT +++
Sbjct: 137 LAPVVTVAGEVHGKLTESDALKLVAELRQ 165
>gi|163751849|ref|ZP_02159064.1| ATP synthase subunit E [Shewanella benthica KT99]
gi|161328265|gb|EDP99427.1| ATP synthase subunit E [Shewanella benthica KT99]
Length = 178
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R+ SS S ++++++ P + I L Q+Q GWVS A + ++
Sbjct: 10 RILPSNGDDSS-QLSPCEIKQLDKLLASAP--YPAAVSIDALKLIQQQRGWVSDACLSIL 66
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
+ + ++ + +ATFY VG + C C L G ++ K+H +P
Sbjct: 67 SAYIHVSIADLDSVATFYNLIFRQAVGEI-VLHPCDGISCDLMGGVEVRAAISQKLHIEP 125
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
D + + C GAC AP+++ K Y LT + ++ID +
Sbjct: 126 GETTPDKRFTLIPLPCLGACDKAPVMIASKQVYPHLTVRNIAQLIDELEENKK 178
>gi|154495356|ref|ZP_02034361.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
43184]
gi|154085280|gb|EDN84325.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
43184]
Length = 165
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Query: 25 WVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++E+++ + +I +L AQ G++ R E++A L + +V + TFY+
Sbjct: 12 KIDELLAVCDEHNNDPGELINILHAAQGIFGYLPREVQEIIAGRLYIPVSKVYGVVTFYS 71
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EK++E + ++ K SDG S + + C GA
Sbjct: 72 FFTMTPKG-KYPISVCLGTACYVRGAEKVLEEFQRQLEIKVGETTSDGLFSLDCLRCVGA 130
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V I Y LTPE++ +I+ +
Sbjct: 131 CGLAPVVTIAGKVYGRLTPEKVRDILSEY 159
>gi|270308167|ref|YP_003330225.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
[Dehalococcoides sp. VS]
gi|270154059|gb|ACZ61897.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
[Dehalococcoides sp. VS]
Length = 161
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 19 SEE--SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ E ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV
Sbjct: 8 TPEVIDLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVY 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFY F + P G + V VC T C + G K+++ + K D S E
Sbjct: 66 HVATFYKLFSVIPKG-KHTVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLE 124
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V C G C P+V++ + L E+I+ +
Sbjct: 125 TVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160
>gi|220929713|ref|YP_002506622.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulolyticum H10]
gi|220000041|gb|ACL76642.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulolyticum H10]
Length = 157
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V+ V+S+Y +S +I +L Q + ++ ++ VA LD+ ++ +ATFY F
Sbjct: 9 VDGVLSKY--DNHKSHLIAVLQEIQNEYKYLPEDVLKYVAEKLDINLSKIFSVATFYENF 66
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
L P G + ++VC T C +R ++ R ++ H D + E V C GAC
Sbjct: 67 SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSDNKHTTDDMLFTVETVSCLGAC 125
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AP++ I + +TP+ E+I +
Sbjct: 126 GLAPVITINDKVHAKMTPDSTIELIKTLRS 155
>gi|262280143|ref|ZP_06057928.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
RUH2202]
gi|262260494|gb|EEY79227.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
RUH2202]
Length = 169
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + I YP ++A + L Q + GWV A + +A +L M+ +
Sbjct: 17 LTAEEIHDIEHHIGHYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + DG +
Sbjct: 75 VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI +DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 168
>gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
6192]
gi|306532049|gb|ADN01583.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
6192]
Length = 164
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80
++ YPP + ++ +L Q+ ++ +E VA LD+ + I +
Sbjct: 1 MAHIDRPWKAYPP--RRDNLLLILHDIQDHNPRNYLPDDEVEEVARYLDIPVSELDGIIS 58
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+ F P G R +++C + C L G L + + K DG + E V C
Sbjct: 59 FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C P +M+ + + +T E+L+ +I+ + +G P
Sbjct: 118 LGCCDKGPSLMVNDELHTRMTREKLDLLIEELARREGVAYEP 159
>gi|114567344|ref|YP_754498.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338279|gb|ABI69127.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 148
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+IS Y +I Q++ ++ A+ A + D+ + +ATFY+ +
Sbjct: 5 REIISAYKEV--PGGIIEAYHAVQKEYSYIPEDAVVYAAQVFDIPEAKAYGVATFYSYLK 62
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ P G + +++C + PC + G +K++ ++ K DG + E EC G C
Sbjct: 63 VGPRG-KNVIRICESAPCHIAGADKVVAALEKELGIKMGETTPDGKFTLEFAECVGQCQA 121
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
P++ I Y D+T +++ I+ +
Sbjct: 122 TPVITINSQPYGDVTADKIAAILTEYK 148
>gi|332971175|gb|EGK10139.1| NADH-quinone oxidoreductase subunit E [Psychrobacter sp.
1501(2011)]
Length = 170
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + ++E I YP +R +A + L Q++ GWV A + +AN+LD+ +
Sbjct: 18 LTAQEIEGIHEYIHHYPQAR--AASLDALKLVQKRNGWVDDAQVNAIANLLDVPVTDIEG 75
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ + SPVG R + VC + C L G E L ++++ + +DG +
Sbjct: 76 VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEGLAAELKSQLGIEFGQTTTDGRFTLLP 134
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ C G C P V+I +DT+ +TP+++ E+++
Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVTPDQVAELLE 167
>gi|288959750|ref|YP_003450090.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
gi|288912058|dbj|BAI73546.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
Length = 182
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A++P+L QE+ G++ AI ++A L+++ V + +FY +F+ R ++V
Sbjct: 23 RGALLPILHALQEEFGYIDEEAIPLLATELNLSRADVHGVVSFYHEFRRE-KPGRHIIKV 81
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G L++ + ++ +DG + E V C G C +P VMI ++ +
Sbjct: 82 CRAEACQSMGANALVDHIKTRLQVDFHGTTADGAFTLEPVFCLGNCALSPAVMIDENLHG 141
Query: 159 DLTPERLEEIIDAFSTG 175
++P+R + +
Sbjct: 142 RVSPDRFDALAAETRAN 158
>gi|323703082|ref|ZP_08114737.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323531976|gb|EGB21860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 187
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE +++V++ Y R +I +L AQ G++ +++ +D+ V +
Sbjct: 9 EEKFNRLDQVLAVY--GRDPEQLIRVLQEAQHIFGYLPEEVQAYISHKMDIPVSAVNGVV 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F P G + +V VC T C ++G +K+ + R+++ K D +
Sbjct: 67 TFYALFSTEPKG-KYNVNVCLGTACYVQGAQKIYDTFRDQLGLKDSDTTEDMLFTVRSSR 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C GAC AP++ + +D + LT + E+I + +
Sbjct: 126 CLGACGLAPVITVNEDVHGKLTARDVAELIGRYKKKE 162
>gi|320161183|ref|YP_004174407.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
gi|319995036|dbj|BAJ63807.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
Length = 159
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ + +IP+L Q G++ +E VA +L + +V +ATFY + +G R
Sbjct: 23 GKTREELIPILQEINRQYGFIPSQGLEEVARLLQIPKSQVFSVATFYHMLNVKEMG-RHI 81
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ C + PC + G ++ + ++ D S V C G C P+++I +D
Sbjct: 82 ILFCESAPCHVVGGREVWRRLKQELKIDAGETTPDKKWSLVTVSCLGVCGVGPVIVIDED 141
Query: 156 TYEDLTPERLEEIIDAF 172
Y ++TPE + +I+ +
Sbjct: 142 MYGNVTPEMIPDILARY 158
>gi|146278887|ref|YP_001169046.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
17025]
gi|145557128|gb|ABP71741.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides ATCC 17025]
Length = 157
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E V+E++ + + ++P+L QE G V ++ +A L+++ V +
Sbjct: 6 AEVCARVDEILDEH--EGLEGPLLPILHAVQEAFGHVPLESLPRIAERLNLSRAEVHGVM 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F+ P R +++C C G ++L E + ++ +DG ++ E V
Sbjct: 64 SFYHDFRTRP-HGRHVLKLCRAEACQAMGADRLAEATQARLGIGWHQTTADGGVTLEPVF 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C AP ++ + RL+ I++
Sbjct: 123 CLGLCACAPAALVDGRVVGRVDDARLDRILEEVRA 157
>gi|312878992|ref|ZP_07738792.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Aminomonas paucivorans DSM 12260]
gi|310782283|gb|EFQ22681.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
iron-sulfur protein [Aminomonas paucivorans DSM 12260]
Length = 172
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ I P + +I +L +AQ G++ VA LD+ +V + TF
Sbjct: 9 QYQELGAFIDGLPE--KRGELITVLHKAQGIFGYLPEEVQAFVAKKLDIPLAKVYGVVTF 66
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y+ F + P G V VC T C +RG E+++ + K ++DG S + + C
Sbjct: 67 YSFFTMVPKGKV-VVSVCMGTACYVRGAEEVLAELEKVLGIKAGQVSADGHFSLDTLRCV 125
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GAC AP+V+I Y LTP ++ II +
Sbjct: 126 GACGLAPVVIINGKVYGRLTPAQIPGIIAPYR 157
>gi|94309498|ref|YP_582708.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cupriavidus
metallidurans CH34]
gi|93353350|gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
metallidurans CH34]
Length = 169
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
A++P+L Q+ +G++ A+ VVA L+++ V + TFY F R VQV
Sbjct: 29 PGALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHF-RERPAGRTVVQV 87
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L R + +DG + E V C G C P + IG +
Sbjct: 88 CRAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMTIGDRLHG 147
Query: 159 DLTPERLEEIIDAFSTGQ 176
+ +R +++IDA +
Sbjct: 148 RVDMQRFDKLIDAVRERE 165
>gi|225026579|ref|ZP_03715771.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
gi|224956071|gb|EEG37280.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
Length = 158
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ +I + ++++IP++ Q + ++ + VA+ + + + +ATFY
Sbjct: 7 YDKADTIIKSH--GAMEASLIPIIQDIQSEYRYLPPELLSYVADQIGITEAKAFSVATFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F P G + ++VC T C +R ++E +++ K D + E V C
Sbjct: 65 ENFSFEPKG-KYVIKVCDGTACHVRKSTTILERIYSELGLSKDKVTTEDMLFTVETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
GAC AP++ + Y +TP+ +++ +
Sbjct: 124 GACGLAPVLTVNDKVYPSMTPDDAAQLLQKLREEE 158
>gi|294140412|ref|YP_003556390.1| NADH dehydrogenase I subunit E [Shewanella violacea DSS12]
gi|293326881|dbj|BAJ01612.1| NADH dehydrogenase I, E subunit [Shewanella violacea DSS12]
Length = 228
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
++ ++ + +S S ++++++ P + I L Q+Q GWVS ++
Sbjct: 56 ALAKITNRQAVDNSPQLSPCEIKQLDKLLASAP--YPAAVSIDALKVIQQQRGWVSDTSL 113
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
+++ + ++ + +ATFY VG + C C L G ++ K+H
Sbjct: 114 SLLSAYIQVSVAELDSVATFYNLIFRQAVGEV-VLHPCDGISCDLMGGVEVRAAISQKLH 172
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
P D + + C GAC AP+++ K Y LT ++ ++ID +
Sbjct: 173 INPGETTPDNRFTLIPLPCLGACDKAPVMIASKHVYPHLTLNKIAQLIDELDGDKK 228
>gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Ilyobacter polytropus DSM 2926]
gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Ilyobacter polytropus DSM 2926]
Length = 565
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE + ++S+Y +++++P+L + G + A++ +A ++D+ V +A
Sbjct: 7 EELKEKIALLVSKY--GNDRASILPVLEDISREYGEIDLYAMQTLAFLVDIHPSEVFGVA 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY + + +++C T C ++ +++ + N++ + SDG S E
Sbjct: 65 TFYNFLKSGKKHGKYVIRLCRTISCHMKEKDRIAKQLNNELEIEFGEITSDGLFSLEYCN 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C G C P ++I + P + II + G
Sbjct: 125 CLGMCDQGPAMLINDILISKVKPSDIPLIIQSCRRG 160
>gi|326201301|ref|ZP_08191173.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325988869|gb|EGD49693.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 157
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
VN +++++ +S +I +L Q + ++ + VA L++ ++ +ATFY F
Sbjct: 9 VNGILNKH--DNNKSHLIAVLQEIQNEYKYLPEDVLNYVAEKLEINLSKIFSVATFYENF 66
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
L P G + ++VC T C +R ++ R ++ + H D + E V C GAC
Sbjct: 67 SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSESKHTTDDKLFTVETVSCLGAC 125
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
AP++ I Y +TP+ EII +
Sbjct: 126 GLAPVITINDKVYAKMTPDSTIEIIKTLRS 155
>gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
Ellin428]
gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
Ellin428]
Length = 655
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ ++E I+ YP S +SA +PLL QE G++S AI +A L++ I +
Sbjct: 1 MEVPSDLLAKIDEAITHYPAS-KRSASLPLLHLWQEHFGFISDEAISWIAQKLELQPINI 59
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------------- 122
LE+ TFY F+ P G R ++VC T C + G +L E
Sbjct: 60 LELVTFYPMFRREPAGKRH-IRVCRTLSCAMAGSYELKERIAAAAGIDLKKWAEEGAHHA 118
Query: 123 -----KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
P+ + DG S E VEC +C +AP+ M+ + E++ E +++ +
Sbjct: 119 NAGHGNPIAVSPDGQYSIEFVECLASCGSAPVAMVDDNFKENVKLEDAAKLLKLQRSDAT 178
Query: 178 DTIRPGP 184
P
Sbjct: 179 MPRVRPP 185
>gi|332981957|ref|YP_004463398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
australiensis 50-1 BON]
gi|332699635|gb|AEE96576.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
australiensis 50-1 BON]
Length = 150
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E+++R+ + ++P+L+ Q + ++S ++ V+ +L + RV +ATFY+
Sbjct: 2 VEEIVNRH--GIAEDKLMPILLDIQNSNDKHYLSEDDLKQVSKLLGIPESRVYSVATFYS 59
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L P G + VQ+C PC++ G +I+ R+ + SDG + E C G
Sbjct: 60 FFSLQPRG-KYIVQICDNAPCIVNGAYNVIDDFRHILGIDMGQTTSDGLFTLEYSSCLGC 118
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C +AP I + Y DL E+++ I+
Sbjct: 119 CSHAPAARIAGELYGDLDSEKIKSILSDLR 148
>gi|322419372|ref|YP_004198595.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
gi|320125759|gb|ADW13319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
Length = 173
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
PS E + I P + ++ L +AQ G++ + VA+++ +
Sbjct: 16 PSPTRLPEALTRELESFIDSLPT--KEGHLVTALHKAQSLYGYLPMEVQQQVASLMGTSL 73
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+V + +FYT F + P G + + VC T C +RG EK+I+ + ++ + DG
Sbjct: 74 SQVYGVVSFYTYFTMVPKG-KYPISVCNGTACFVRGSEKVIDAFKKQLCIEVGEVTRDGL 132
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
S + + C GAC AP+VM+G+ T+ +TP+++++II F
Sbjct: 133 FSIDVLRCVGACALAPVVMVGEKTFGGVTPDQVKDIIAEFK 173
>gi|254167374|ref|ZP_04874226.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Aciduliprofundum boonei T469]
gi|197623637|gb|EDY36200.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Aciduliprofundum boonei T469]
Length = 149
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY
Sbjct: 2 EEKVLQIINKH--KNKDSKLLAILHDVQDEFGYIPEDAIKTIAKELGMKKGEVYDAASFY 59
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F+ P G + V +C C ++G K+IE + K DG +++ VE G
Sbjct: 60 SFFRFKPEG-KHEVMICDCIVCHIKGSGKIIERIEKEFGVKMGETTKDGKYTFKVVEGLG 118
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
C ++P++M+ Y DLTP+++ EI+
Sbjct: 119 HCESSPVMMLDGKIYGDLTPDKVVEIL 145
>gi|150018924|ref|YP_001311178.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
beijerinckii NCIMB 8052]
gi|149905389|gb|ABR36222.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
beijerinckii NCIMB 8052]
Length = 164
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+++ +++++ + ++ +I ++ Q++ ++ A+ +A L ++ +V +
Sbjct: 5 NQKEIKKLDDILIS--NNYDKTQIITIMQEIQKEYRYLPEEALCYIAKELKISEAKVYGV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEE 137
ATFY F L P G + +++C T C +R + ++ ++++ D + E
Sbjct: 63 ATFYENFSLEPKG-KYVIRICDGTACHVRKSDPILSEFKSELGLSEKKLTTDDMHFTVET 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C GAC AP+ + Y +TPE+ +++
Sbjct: 122 VSCLGACGLAPVCTVNDVVYPSMTPEKARKLVKQLKE 158
>gi|126665579|ref|ZP_01736561.1| ATP synthase subunit E [Marinobacter sp. ELB17]
gi|126630207|gb|EBA00823.1| ATP synthase subunit E [Marinobacter sp. ELB17]
Length = 178
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + +S E + + I+ A++P+L Q++ G+V A+ ++A +L
Sbjct: 17 PVAGDWSPE---IIRQEIAA--LQHKPGALLPILHAIQDRVGYVPEDAVPIIAEMLQQTR 71
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + +FY F+ P G+ ++VC C RG L + ++ +D
Sbjct: 72 ADIHGVISFYHHFRTHPSGS-NLLEVCRAEACQARGGRALERHVQERLSVGYHDTTADNE 130
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V C G C P + + D +TP++ ++++DA
Sbjct: 131 FTLVPVYCLGNCACGPSIRVNNDIIGRVTPQKFDQLVDAL 170
>gi|330508799|ref|YP_004385227.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
concilii GP-6]
gi|328929607|gb|AEB69409.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
concilii GP-6]
Length = 153
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E+I Y + ++I LL+ Q + W+S+ A++ ++ L + R+ IA+FY
Sbjct: 7 KRLVEMIDGY--KGKEGSLIQLLLDLQSEFNWISKDALQEISERLKIPPSRIYRIASFYE 64
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
L P+G + + VC T C +RG +++ +K+ K D + + V C G
Sbjct: 65 AISLKPIG-KHKISVCMGTACQVRGSGMILDRTESKLKIKQGGTTPDMRFTLKRVNCLGC 123
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C P++++ D + LT +R+E II +
Sbjct: 124 CAIGPVMVVDDDYHGRLTSDRVERIIKKY 152
>gi|57234507|ref|YP_181466.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 159
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
V ++ +Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+
Sbjct: 12 KVKNILDKY--AKDKGMLVAILQDIQTEFNYLPRPALETVSEGLGVPMSQVYSVATFFKA 69
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G + + VC T C +RG K+++ K+ +D S + V C GAC
Sbjct: 70 FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTADMKFSLDAVNCVGAC 128
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
P+V++ ++T E+++ +I+
Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQDD 159
>gi|73540323|ref|YP_294843.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
JMP134]
gi|72117736|gb|AAZ59999.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
JMP134]
Length = 179
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
A++P+L Q+ G++ A+ V+A L+++ V + TFY F R VQV
Sbjct: 31 PGALLPILHEIQDTHGYIPDTAVPVIAKALNLSRAEVHGVITFYHHF-RQQPAGRHVVQV 89
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G E L E + + +DG ++ E V C G C P VM+G+ +
Sbjct: 90 CRAEACQSVGAEALAEHAKRALGCDFHETTADGAVTLEPVYCLGQCACGPAVMMGEQLHG 149
Query: 159 DLTPERLEEIIDAFSTGQ 176
+ +R + ++ Q
Sbjct: 150 YVDAKRFDVLVRKLRADQ 167
>gi|57234358|ref|YP_181589.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
195]
gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
195]
Length = 161
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV +ATF
Sbjct: 13 DLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQALNVPVNRVYHVATF 70
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F + P G + +V VC T C + G K+++ + K D S E V C
Sbjct: 71 YKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCL 129
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P+V++ + L E+I+ +
Sbjct: 130 GCCALGPVVVVDGHYHGKLPTADAEKILADY 160
>gi|325278930|ref|YP_004251472.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
splanchnicus DSM 20712]
gi|324310739|gb|ADY31292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
splanchnicus DSM 20712]
Length = 158
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E+ + +I +L +AQ G++ +VA+ L++ +V + TFY
Sbjct: 11 IDKLLEICDAH--GNQPGELINVLHKAQHLFGYLPAEVQRIVADKLNIPVSKVYGVVTFY 68
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F ++P G + VC T C +RG EK+++ + ++ DG S + C G
Sbjct: 69 SFFTMTPKGE-HPISVCMGTACYVRGAEKVLDEFKRILNINVGETTPDGKYSLSSLRCVG 127
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP+V+IG+ + + P +E+I+
Sbjct: 128 ACGLAPVVLIGEKVFGRVVPGDVEKILKEL 157
>gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Stappia aggregata IAM 12614]
gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Stappia aggregata IAM 12614]
Length = 626
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 3/160 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
SA ++ + +++ + + ++ +L Q++ ++ A ++ +A + I V +A
Sbjct: 20 PVSAEEIDAICAQFGNDKHR--MLDILREVQDRYRCIAPATMDHIAAATGLTRIEVEGVA 77
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY+ L+P G R +++C G ++ +++ K ++DG S E
Sbjct: 78 SFYSFLSLTPKG-RVTIRLCDDIVDRFSGLSEVACAFEDELGLKVGETSNDGAFSLEYTP 136
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
C G C AP M+ LTPE A G+
Sbjct: 137 CIGMCDQAPAAMVNDIVLTKLTPETARSAAQALKAGRSPE 176
>gi|307544489|ref|YP_003896968.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
gi|307216513|emb|CBV41783.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
Length = 163
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
A++P+L Q++ G+V AA+ ++A L++ V + +FY F+ S G+
Sbjct: 20 KNKPGALLPILHAIQDRVGFVPDAAVPIIAESLNLTRAEVHGVISFYHHFRTSRPGS-HV 78
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V++C C G L ++ + D ++ E V C G C P + +
Sbjct: 79 VRICRAEACQAMGARALEAHAKSSLEVDYHQTTRDQEITLEAVYCLGNCACGPSICVDDR 138
Query: 156 TYEDLTPERLEEIIDAFS 173
+ +T E + ++D
Sbjct: 139 VHGRVTTETFDRLVDDLR 156
>gi|119475814|ref|ZP_01616166.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
gi|119450441|gb|EAW31675.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
Length = 200
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++ + ++ + A++P+L Q + G + + +A++ +++ V + +FY
Sbjct: 47 ATISRIARKHLD--QEGALLPVLHSIQTEFGHIPPDCVGQIADLFNVSAAEVHGVLSFYP 104
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F S R +Q+C C G L + + ++DG + E V C G
Sbjct: 105 FF-RSTPPGRHTIQICRAEACQSMGSRLLERHAKLTLGIDFHQTSADGEFTLEPVYCLGN 163
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C +P + +G + + R + +ID T
Sbjct: 164 CACSPSIRVGTQIFSHVDSARFDALIDDLQTN 195
>gi|307297601|ref|ZP_07577407.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306916861|gb|EFN47243.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 165
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 38 CQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
+I L Q+ G ++ A EV+ + R+ E+ TFYT F G + V
Sbjct: 24 KGDVLINTLHAIQDHYGNFIPIEAAEVLKELTGTPLSRIYEVLTFYTMFSTHKRG-KYVV 82
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
+VC + PC + G + +I+ +N + DG + EE C G C +P++MI +
Sbjct: 83 RVCKSLPCHVTGGQAVIDSLKNTLEIGFGETTEDGLFTLEETSCLGLCGVSPVMMINDEA 142
Query: 157 YEDLTPERLEEIIDAF 172
Y +LTP+R+ EII
Sbjct: 143 YGNLTPKRVSEIIREI 158
>gi|73748665|ref|YP_307904.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
gi|289432691|ref|YP_003462564.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
gi|288946411|gb|ADC74108.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
Length = 161
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 19 SEE--SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S E ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV
Sbjct: 8 SPEVIDLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVY 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFY F + P G + +V VC T C + G K+++ + K SD S E
Sbjct: 66 HVATFYKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLE 124
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V C G C P+V++ + L E+I+ +
Sbjct: 125 TVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160
>gi|147669424|ref|YP_001214242.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|146270372|gb|ABQ17364.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
Length = 161
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 19 SEE--SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S E ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV
Sbjct: 8 SPEVIDLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVY 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFY F + P G + +V VC T C + G K+++ + K SD S E
Sbjct: 66 HVATFYKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLE 124
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V C G C P+V++ + L E+I+ +
Sbjct: 125 TVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160
>gi|169832067|ref|YP_001718049.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638911|gb|ACA60417.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 184
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + + ++++I RY +I +L +AQE G++SR VA + + V +A
Sbjct: 5 ERNYLVLDKIIERY--GDRPGGLIRVLYKAQELFGYLSRDVQTHVAEKMCLPVGHVHGVA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF ++ + V+VC T C ++ + ++ R + +P +DG +
Sbjct: 63 TFYSQF-VTAPQGKNVVRVCMGTACYVKNAQDILNRFRELLGVEPDETTADGLFTLRTTR 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST-GQGDTIRP 182
C GAC AP++ + + + L+ + ++D + G + + P
Sbjct: 122 CIGACSLAPLLTVNESVHGHLSVYDVARLVDRYRKEGPDEEVSP 165
>gi|302875424|ref|YP_003844057.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
gi|307689022|ref|ZP_07631468.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
gi|302578281|gb|ADL52293.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
Length = 157
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
+F F+ +++ +I +S+++ LL Q G++ + ++ LD++
Sbjct: 2 NKTFDFN-----FIDGIIDG--LGCKESSIVHLLQSIQNHYGFLPKEVFSYLSQKLDISE 54
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDG 131
R+ +ATFY F L P G + ++VC T C ++ +++ R +++ + D
Sbjct: 55 ARIYSVATFYKNFSLDPKG-KYIIKVCDGTACHVKKSIPVLDRLRKELNLSEVKLTTDDL 113
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ E V C GAC AP++M+ Y +TP++ E++
Sbjct: 114 LFTVETVHCLGACGRAPVLMVNNKVYPSMTPDKAIELVKNL 154
>gi|262275221|ref|ZP_06053031.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
hollisae CIP 101886]
gi|262220466|gb|EEY71781.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
hollisae CIP 101886]
Length = 171
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A++P+L Q +V AA+ ++A L+++ V + +FY +F+ P G+ +Q
Sbjct: 28 KPGALLPILHEIQHHLSYVPPAAVPMIARGLNLSNADVHGVISFYHEFRNQPPGS-HVIQ 86
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C G + L +++ D + E V C G C+ +P V +G D +
Sbjct: 87 ICRAESCQSMGSQTLERHAFSRLGIGFHETTKDKNFTLEPVYCLGNCMYSPCVRVGDDIH 146
Query: 158 EDLTPERLEEIIDAF 172
D+ + + ++++
Sbjct: 147 GDMNDDAFDSLVNSL 161
>gi|167746891|ref|ZP_02419018.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
gi|167653851|gb|EDR97980.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
Length = 157
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ +E+I+ + Q+A+IP++ Q + ++ + VA+ L + +
Sbjct: 2 LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R ++E +++ + D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP++ + Y +TP+ E+I
Sbjct: 119 TVSCLGACGLAPVITVNDKVYPAMTPDAAAELIRELR 155
>gi|325291005|ref|YP_004267186.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
gi|324966406|gb|ADY57185.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
Length = 154
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIAT 80
V V+ ++ + +I +++ Q+ G ++ + +E VA L+M +V + T
Sbjct: 1 METVKGVLEKFGTGKE--NLIQIMLELQQLSGNNYLPQEWVEEVAKALEMPMSKVYGVMT 58
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F G + ++VC + PC + G E ++E+ + KP DG + E C
Sbjct: 59 FYAMFDTEKRG-KNLIEVCKSGPCHVAGAENVMELLEEALRIKPGETTDDGLFTLEYSAC 117
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
GAC AP + IG++ Y +LT +L+EII+++ G
Sbjct: 118 FGACDIAPAIKIGENVYGNLTEAKLKEIINSYKEG 152
>gi|255318319|ref|ZP_05359554.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
radioresistens SK82]
gi|262379063|ref|ZP_06072219.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
radioresistens SH164]
gi|255304631|gb|EET83813.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
radioresistens SK82]
gi|262298520|gb|EEY86433.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
radioresistens SH164]
Length = 169
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + I YP ++A + L Q + GWV A + +A +L ++ +
Sbjct: 17 LTSEEIHEIQHHIGHYP--YARAASLDALKCVQRRNGWVDDAQLNAIAQLLSISTADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + +DG +
Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDGDTHGLVEVTSIQQLLEKY 168
>gi|118581918|ref|YP_903168.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118504628|gb|ABL01111.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
Length = 172
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+++ ++ P + ++ +L +AQ+ G++ R + VA+++ ++ +V +A+FYT
Sbjct: 27 QELDDFVADLPT--REGHLVTVLHKAQQLFGYLPREVQQYVADLMGVSLAKVYGVASFYT 84
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F + P G + + +C T C ++ K+++ ++ + + DG S + + C GA
Sbjct: 85 FFSMVPKG-KYPISICMGTACYVKQAHKIVDAFKDILGVEIGEVTGDGKFSIDVLRCVGA 143
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP++ +G+ Y +TP++++EII +
Sbjct: 144 CALAPILTVGEKVYAHVTPDQVKEIIAEY 172
>gi|158425076|ref|YP_001526368.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
gi|158331965|dbj|BAF89450.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
Length = 159
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
SA E+I+ + A +P+L QE G+V + ++A L+++ V + TF
Sbjct: 10 SASRAAEIIAEH--RHMDGATMPILHAVQETFGFVPDPVVPMIAESLNLSRAEVYGVVTF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ P G R +++C C G EKL ++ + + DG ++ E + C
Sbjct: 68 YHDFRREPPG-RHVIKLCAAEACQSMGSEKLARYAEERLGIEMGETSPDGKVTLEPIYCL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G C AP MI L ++E++
Sbjct: 127 GLCACAPSAMIDGRLVGRLDEATIDELVAE 156
>gi|15806513|ref|NP_295224.1| NADH dehydrogenase I subunit E [Deinococcus radiodurans R1]
gi|6459263|gb|AAF11068.1|AE001994_4 NADH dehydrogenase I, E subunit [Deinococcus radiodurans R1]
Length = 207
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 26 VNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E+ SRYP + +SA++PLL Q+ EG+V+ + +A + V + +FY+
Sbjct: 11 VAEIFSRYPDTPQGRRSALMPLLREVQDAEGFVAAPRLAEIAELCGTTATEVRSVMSFYS 70
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ P G R H+QVC T C L G + L + ++ +P DG S ++VEC G+
Sbjct: 71 TYHTVPTG-RYHLQVCSTLMCALAGSDALWDELVTRLDVQPGEVTPDGRFSVQKVECLGS 129
Query: 144 CVNAPMVMIGKD-TYEDLTP 162
C AP++ + + YE + P
Sbjct: 130 CGTAPVLQLNDEGFYERVGP 149
>gi|148262415|ref|YP_001229121.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
gi|146395915|gb|ABQ24548.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
Length = 157
Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A+E A +L ++ ++V E+ATFY PVG R +
Sbjct: 21 REAAVDVMKELQRHYGWLTDEAVEEAAALLGLSTLQVEELATFYEMIYRRPVGRR-VIHA 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C G E ++ + +P DG + C G C + P +MIG Y
Sbjct: 80 CDSISCWAVGGEHMMAQLARHLGIEPGETTKDGMFTLLPCCCLGNCGDGPAMMIGDTLYG 139
Query: 159 DLTPERLEEIIDA 171
LT E+LEEI+
Sbjct: 140 RLTAEKLEEILAQ 152
>gi|78221379|ref|YP_383126.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
gi|78192634|gb|ABB30401.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
Length = 173
Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R V V
Sbjct: 21 REAAVDVIKELQRHYGWLTDEAVAEAAGLLGLTPLQVEELATFYEMIYRRPVGKR-VVHV 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C G E L+ K+ +P +DG + C G C AP +MIG Y
Sbjct: 80 CDSISCWAMGGESLMAHLAAKLGVEPGGTTADGMFTLLPCCCLGNCGEAPTLMIGDTLYG 139
Query: 159 DLTPERLEEIIDAFSTGQGDTIR-PG-PQ 185
+TPER EEI+ PG PQ
Sbjct: 140 RVTPERGEEILSNARETAATVPEGPGTPQ 168
>gi|283778530|ref|YP_003369285.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
DSM 6068]
gi|283436983|gb|ADB15425.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
DSM 6068]
Length = 166
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +EE + I RYP Q+ +P L E+ +V A+ +A +L++
Sbjct: 6 PEKPVLTEEMIAEIKAFIPRYPS--KQAVTLPALHIVYEKLRYVPLTAVVEIARLLELHP 63
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+V + +FY F + + VC + C LRG ++L+E +K+ P +DG
Sbjct: 64 SQVQDTLSFYGYFPQKKPCGKTRMWVCRSISCALRGADELLEHLSHKLDVHPGETTADGK 123
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ E EC GAC +AP ++ ++ ++ ++++
Sbjct: 124 ITLEYAECLGACEHAPCILADTVLHKSVSQPDSDKLVAELK 164
>gi|77919201|ref|YP_357016.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
2380]
gi|77545284|gb|ABA88846.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
Length = 173
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++ +L +AQ G++ + E VA+ ++++ +V + +FYT F + P G + +
Sbjct: 39 KEGHLVTVLHKAQSLFGYLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTMIPKG-KHPIS 97
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G +K+++ +N++ DG S + + C GAC AP+V++G+ Y
Sbjct: 98 VCMGTACFVKGADKVVDAFKNQLGVTVSEVTRDGKFSIDCLRCVGACALAPVVLVGEKVY 157
Query: 158 EDLTPERLEEIIDAF 172
++TP+++++II F
Sbjct: 158 ANVTPDQVKDIIADF 172
>gi|33600309|ref|NP_887869.1| formate dehydrogenase subunit gamma [Bordetella bronchiseptica
RB50]
gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
bronchiseptica RB50]
Length = 185
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P R ++
Sbjct: 47 QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEP-AGRHVLE 105
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C G + L R ++ + +DG+ + E V C G C +P VMI +
Sbjct: 106 ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 165
Query: 158 EDLTPERLEEII 169
+TP +L+ ++
Sbjct: 166 ARVTPAKLDRLL 177
>gi|317052149|ref|YP_004113265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
indicum S5]
gi|316947233|gb|ADU66709.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
indicum S5]
Length = 173
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V + RY +R A+I +L AQE G++ + VA LD+ +V+ +ATFY F
Sbjct: 21 VERTLKRY--ARQPDALIEVLHTAQEAYGYLPEGILTHVARELDLPESQVMGVATFYHFF 78
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L P G VC T C ++G +++ + DG LS C G C
Sbjct: 79 SLRPRGE-HSCIVCTGTACYVKGAGEIVSAVEKEYGITAGQTTPDGKLSLGAARCLGNCS 137
Query: 146 NAPMVMIGKDTYEDLTPE-RLEEIIDAFSTGQGDT 179
APM+ + + TPE LE++ + G+G+
Sbjct: 138 LAPMLTLDDEVLGRETPEGTLEKLRQHIAAGRGEP 172
>gi|152996298|ref|YP_001341133.1| formate dehydrogenase subunit gamma [Marinomonas sp. MWYL1]
gi|150837222|gb|ABR71198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Marinomonas sp.
MWYL1]
Length = 165
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 3/153 (1%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+I + A++PLL Q++ ++ A+ ++A L ++ V + +FY F+
Sbjct: 15 QAIIEEFKA--KPGALLPLLHAIQDRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFR 72
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
G R V+VC C G L ++ + + +D ++ E V C G C
Sbjct: 73 TKQPG-RHVVEVCRAEACQAVGARHLEAYAKSILDVQYHQTTADNNITLEPVYCLGNCSC 131
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
P V +G + Y ++ +R +E+I++ T + +
Sbjct: 132 GPSVRVGDEIYAEVDTQRFDELIESLKTERLEV 164
>gi|307822804|ref|ZP_07653035.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
tundripaludum SV96]
gi|307736408|gb|EFO07254.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
tundripaludum SV96]
Length = 159
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 16 FS-FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F S +N +S Y + I L Q+ WVS + VA +LD++ +
Sbjct: 6 FEGLSLAEIREINAEMSHY--ENKTAVSIEALKIVQKHRRWVSDQCLIAVAELLDISPAQ 63
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ +ATFY PVG + C + C + G +++ E ++ + ++DG +
Sbjct: 64 LEGVATFYNLIYRQPVGKT-VIHYCNSVTCWMLGSDQVGESLCRHLNVELGEMSADGEYT 122
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ C GAC +AP+VM+G + D+T + + EI+
Sbjct: 123 VLPIVCLGACDHAPVVMVGNELKFDITEDAVNEIL 157
>gi|320161179|ref|YP_004174403.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
gi|319995032|dbj|BAJ63803.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
Length = 205
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 6/175 (3%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
++ + E P + E +++++ + ++ +L Q Q G++S +
Sbjct: 35 LKSITVPENDPIAIE---EKRAIIDQILEQ--NKHLPGGLMVILNEVQSQIGFISEPMQQ 89
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+AN L + V + +FY+ F +P G + ++ C T C + G +LIE + +
Sbjct: 90 YIANKLHVPVSTVHGVVSFYSFFTTTPRG-KHTIKFCMGTACYVGGTPQLIEKAKQVLGI 148
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
P DG ++ E C GAC AP++++ ++ + P + +++ Q
Sbjct: 149 DPGETTPDGQITLELCRCVGACSQAPVIVVDEEIQGRVRPNKFPQLLRLIQDEQK 203
>gi|225570604|ref|ZP_03779629.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
15053]
gi|225160617|gb|EEG73236.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
15053]
Length = 157
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+EVI+ + +++IP++ Q + ++ + VA L + + +ATFY
Sbjct: 7 YDKADEVIASHGCGH--ASLIPIIQDIQSEYRYLPPELLSYVAGKLGITEAKAYSVATFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
F P G + ++VC T C +R ++E +++ K D + E V C
Sbjct: 65 ENFSFEPKG-KYVIKVCDGTACHVRKSIPILERLYSELGLSKEKVTTDDMLFTLETVSCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
GAC AP++ + Y +TP+ E+I
Sbjct: 124 GACGLAPVLTVNDKVYPAMTPDAAAELIHELR 155
>gi|297539619|ref|YP_003675388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
301]
gi|297258966|gb|ADI30811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
301]
Length = 159
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 19 SEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+++ + +IS + A++PLL Q+ G+V ++ + L ++ V
Sbjct: 6 TKQDLDLRLGALISEH--QHMPGALMPLLHAIQDNIGYVPESSYSQIGKALSLSVAEVHG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F+ R +Q+C C G E L + ++ SD ++ E
Sbjct: 64 VVTFYHHFRT-HKPGRHVMQICRAESCQSMGSEALEAHAKKCLNVDYHQTTSDDAITLEA 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
V C G C +P VM+ ++ Y ++ E L+ +I
Sbjct: 123 VYCLGNCALSPAVMMDEEVYGRVSAEDLDALIAEARA 159
>gi|169334686|ref|ZP_02861879.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
17244]
gi|169257424|gb|EDS71390.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
17244]
Length = 160
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 5/163 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYI 73
EE +I Y S ++ ++++ Q Q +++ + +A+ + +
Sbjct: 1 MKLPEEIKKVCKNIIEYY--DNNPSDLLQIVLKIQRQIPGKFINFDIAKYIADEMQIPLS 58
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+V E+ T++ G + + +C T C L G +K+ E+ ++ K DG
Sbjct: 59 KVSEVVTYFDALSTKKRG-KYILGLCNATACSLNGKDKIKEIFERELGIKEGETTEDGLF 117
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ E V C GAC AP V + + L E+++ +I +
Sbjct: 118 TLELVPCFGACDVAPAVRVNDNVVGRLNEEKIKALIAKLKGAK 160
>gi|302391062|ref|YP_003826882.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
gi|302203139|gb|ADL11817.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
Length = 163
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 20 EESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
EE+ + +++ Y +IP+L Q++ ++ ++ VA + ++ +V
Sbjct: 9 EENLNKYLEPLFKILDGYAKEEK--NLIPILQDVQDEYDYLPEPVLKEVATEIGLSASQV 66
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+QF L P G ++VC T C +RG E ++ ++ + + +
Sbjct: 67 YGVATFYSQFHLEPRGD-NIIRVCMGTACHVRGAENILNKIEEELEIEEGETTENLEFTL 125
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
E V C GAC AP++MI DT+ LTP+R+ E++ +
Sbjct: 126 ESVACIGACGLAPVIMINDDTHGRLTPDRVPEVLAQYQ 163
>gi|150391793|ref|YP_001321842.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
gi|149951655|gb|ABR50183.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
Length = 159
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
S +EE+ + V+ + ++P+L AQ+ G + + + + +
Sbjct: 2 KKTSLTEENFQKLQIVMEE--EKGEKGPLMPVLHEAQKIFGCIPLEVQKKICEEMKIPLS 59
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ + TFY+QF L P G + VC T C ++G + +++ I K + DG
Sbjct: 60 EIYGVITFYSQFSLEPKGD-YVIGVCMGTACYVKGAQPILDKVSELIGAKAGCNSGDGRF 118
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
S C GAC AP++ + +D Y L + I++ +
Sbjct: 119 SLVATRCIGACGLAPILTVNEDVYGRLKLTDIPGIVEKYQK 159
>gi|163782977|ref|ZP_02177972.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
gi|159881657|gb|EDP75166.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
Length = 154
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F +E +N+ I+ +P R + A++ L Q+ G+V ++ +A++LD+ V +
Sbjct: 2 FEQELLEKLNQHINYFP--RKEQAILVCLHEIQDHYGYVPPESLRPLADMLDLPLNHVEQ 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ FY F + ++VC + C G ++L++ + KP DG
Sbjct: 60 VVAFYDMFDRQT-PAKYRIRVCVSVVCHFLGKQELLKALEKALKIKPGEVTPDGKFKIVP 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V+C GAC AP+ M+ +DTY+ E+L E++ +
Sbjct: 119 VQCLGACSEAPVFMVNEDTYKFEGEEKLNEVLSKY 153
>gi|134299510|ref|YP_001113006.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
reducens MI-1]
gi|134052210|gb|ABO50181.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
Length = 158
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ ++ + ++Y + + +I ++ QE +G++ + + A L + V +ATF
Sbjct: 10 NQSKLDALFAQYKGN--PNGLIVVMAAIQESQGYLPKDLLVRTAEELGVPLSDVYGVATF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F L P G R V +C T C ++G ++ + ++ K + D S + V C
Sbjct: 68 YAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQSMLEKEMGIKAGNTTEDRRFSLDLVRCL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
GAC AP++ + + Y +T E++ E++ +
Sbjct: 127 GACGIAPVLTVNGEVYPRMTAEKVTEVLSKY 157
>gi|27904649|ref|NP_777775.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|38372476|sp|Q89AU3|NUOE_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
subunit E
gi|27904046|gb|AAO26880.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 171
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F + + I + +I Y R S++I +L Q+ GW+S I +A IL ++
Sbjct: 16 KFKLTIQEKIEIFNIIKNYRTVR--SSLIEILKFVQKSYGWISNELITELACILKISKCD 73
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ EIATFY+Q P+G R ++ C + C + GCEK+ ++ D +
Sbjct: 74 IEEIATFYSQIFRQPIG-RNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFKFT 132
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C +P +MI D Y ++T + +++++
Sbjct: 133 LLPICCLGNCDKSPTIMINDDLYSNVTEYSVIVLLESYQ 171
>gi|325261422|ref|ZP_08128160.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
gi|324032876|gb|EGB94153.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
Length = 170
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E+ + Y + ++I +L AQ G++ EV+A+ LD+ V + TFY
Sbjct: 19 LQRIGELAAEY--RGKEGSLIQVLHMAQGLYGYLPLEVQEVIADSLDLPLAEVSGVVTFY 76
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ F P G + ++VC T C +RG +K++E + + + D ++E C G
Sbjct: 77 SFFATQPRG-KHTIRVCLGTACYVRGGKKIVERLKKILDVEIGETTKDRKFTFEVARCIG 135
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+C AP + I Y+ + P++LE+I+ +
Sbjct: 136 SCGLAPAMSIDDQVYKQVNPDKLEQILQRY 165
>gi|301059362|ref|ZP_07200289.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
gi|300446591|gb|EFK10429.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
Length = 162
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E + SR+ S+ +IP+L QE G++ +A ++ ++ + +A
Sbjct: 12 DEENARFEGITSRHKDSK--GGLIPILHEVQELYGYLPDSAFVRISKTCNIPLSEIYGVA 69
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F L P G + + VC T C ++G ++++ R ++ DG S
Sbjct: 70 TFYSFFSLKPKG-KYEISVCMGTACYVKGAGRILDRIREELDIDVGDCTEDGKFSLSACR 128
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++ + + + L + E+++ +
Sbjct: 129 CLGACGLAPVIKVNEQVHGRLALADVSEVLNQY 161
>gi|33595782|ref|NP_883425.1| formate dehydrogenase subunit gamma [Bordetella parapertussis
12822]
gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
parapertussis]
Length = 163
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P R ++
Sbjct: 25 QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEP-AGRHVLE 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C G + L R ++ + +DG+ + E V C G C +P VMI +
Sbjct: 84 ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 143
Query: 158 EDLTPERLEEII 169
+TP +L+ ++
Sbjct: 144 ARVTPAKLDRLL 155
>gi|317471700|ref|ZP_07931041.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
gi|316900804|gb|EFV22777.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
Length = 157
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ +E+I+ + Q+A+IP++ Q + ++ + VA+ L + +
Sbjct: 2 LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
+ATFY F P G + ++VC T C +R ++E +++ + D + E
Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C GAC AP++ + Y +TP+ E+I
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDAAAELIRELR 155
>gi|221640573|ref|YP_002526835.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides KD131]
gi|221161354|gb|ACM02334.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides KD131]
Length = 155
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E V++++ + + ++P+L QE G V ++ +A L+++ V +
Sbjct: 4 AEVHARVDDILDAH--EGLEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F+ P R +++C C G ++L E + ++ +DG ++ E V
Sbjct: 62 SFYHDFRTRP-HGRHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P ++ + RLE I++
Sbjct: 121 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 155
>gi|77464659|ref|YP_354163.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides 2.4.1]
gi|332559553|ref|ZP_08413875.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
gi|77389077|gb|ABA80262.1| NAD-dependent formate dehydrogenase, gamma subunit (24 kDa)
[Rhodobacter sphaeroides 2.4.1]
gi|332277265|gb|EGJ22580.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
Length = 157
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E V++++ + + ++P+L QE G V ++ +A L+++ V +
Sbjct: 6 AEVHARVDDILDAH--EGLEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F+ P R +++C C G ++L E + ++ +DG ++ E V
Sbjct: 64 SFYHDFRTRP-HGRHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P ++ + RLE I++
Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157
>gi|194288742|ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus
taiwanensis LMG 19424]
gi|193222577|emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
taiwanensis LMG 19424]
Length = 181
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
A++P+L Q+ +G++ A+ V+A L+++ V + TFY F R
Sbjct: 31 QHMPGALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHF-RQQPAGRHV 89
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
VQVC C G L E + + ++DG ++ E V C G C P VM+G+
Sbjct: 90 VQVCRAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQ 149
Query: 156 TYEDLTPERLEEIIDAFSTGQGDTI 180
+ + R + ++
Sbjct: 150 LHGYVDAARFDALVRTLRARSTAAP 174
>gi|225175129|ref|ZP_03729125.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225169305|gb|EEG78103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 171
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE V+E+++ +R +IP+L QE+ G++ R A+E VA+ + MA + V +A
Sbjct: 9 EEILNSVDEILTSSEINRR--NLIPILQSIQERLGYLPRPALEKVADAMGMAAVDVYGVA 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF+ P G ++VC T C + G + ++ +++ D E V
Sbjct: 67 TFYNQFRFHPPGE-HQIKVCMGTACYIVGGQIAMDSFARRLNISEGETTPDRKYGLERVA 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C G C AP+V++ + +TP R++ I+ + G+ +PG
Sbjct: 126 CVGCCTMAPVVVVDEQMEGSVTPTRVDGILLSLEAN-GNGEKPG 168
>gi|319760613|ref|YP_004124551.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
str. BVAF]
gi|318039327|gb|ADV33877.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
str. BVAF]
Length = 155
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
++E + E + Y +R +A I L Q+ GWVS AI ++A IL ++ V
Sbjct: 1 MQLTKEELSIIREECNCYESTR--AASIEALKIVQKNYGWVSDDAIVLIAQILHISVSDV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY Q PVG ++ C + C + GC + + ++ K + D +
Sbjct: 59 EGVATFYNQIFRQPVGQ-NIIRYCDSIVCYVTGCNAIKKTLECILNIKIGNTTKDNKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C +P++MI +D Y + ++ +I++ +
Sbjct: 118 LPTCCLGMCDKSPVIMINEDVYSHIVLSKINKILNLYR 155
>gi|255524300|ref|ZP_05391258.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296185257|ref|ZP_06853667.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
gi|255511983|gb|EET88265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
carboxidivorans P7]
gi|296050091|gb|EFG89515.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
carboxidivorans P7]
Length = 160
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
E ++ I + ++I +L AQ+ G++ +AN LD++ +V
Sbjct: 5 KLDNEKLKELSSYIDN--LEEKEGSLINVLHEAQDMFGYLPEELQIFIANKLDISAAKVF 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F + P G + + +C T C ++G E ++E R +++ K DG + +
Sbjct: 63 GVVTFYSYFTIEPRG-KHVISICMGTACFVKGAENVLEEFRKELNIKDGFSTEDGLFTID 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ C GAC AP+V+I Y + E ++ I+ ++
Sbjct: 122 ILRCVGACGLAPVVVIDGMVYGKVKVEDVKGILSQYTEN 160
>gi|303245640|ref|ZP_07331923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
gi|466363|gb|AAA87054.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
fructosovorans]
gi|302492903|gb|EFL52768.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
Length = 171
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
+ + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + +
Sbjct: 37 QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KYPI 95
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
VC T C ++G +K++ + ++ DG S + + C G C AP+VM+G+
Sbjct: 96 SVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKV 155
Query: 157 YEDLTPERLEEIIDAF 172
Y ++TP ++++I+ +
Sbjct: 156 YGNVTPGQVKKILAEY 171
>gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
gi|85723788|gb|ABC78731.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
Length = 150
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++++I ++ SA+I +L+ QE+ W+ + A+E V+ L + V ATFY
Sbjct: 4 ERIDQIIEKH--QGASSALIQILLDIQEENHWLPKEALERVSEKLQIPITTVRHAATFYK 61
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G R V VC T C +RG ++++ + KP + D S E V C G
Sbjct: 62 VFSTVPKG-RHQVHVCLGTACHVRGATRVLDTVQESTGIKPGETDLDLKFSLETVNCLGC 120
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C P++ I Y TP + +++ +
Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149
>gi|262376774|ref|ZP_06070002.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
gi|262308484|gb|EEY89619.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
Length = 169
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + + + YP ++A + L Q + GWV A + +A +L M+ +
Sbjct: 17 LTADEIHDIEHHMGHYP--YPRAACLDALKCVQRRNGWVDDAQMNAIAQMLSMSVADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + +DG +
Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +MI +DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168
>gi|114328596|ref|YP_745753.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
[Granulibacter bethesdensis CGDNIH1]
gi|114316770|gb|ABI62830.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
[Granulibacter bethesdensis CGDNIH1]
Length = 159
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+FS E +I + + A++P+L Q + G+V + ++A+ L+++ V
Sbjct: 9 AFSAE---RAARIIDTHRD--QEGAMLPILHDLQAEFGYVPEEVVPMLADALNVSRAEVH 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY F+ P G R +++C C G + L + R K+ +G+++ E
Sbjct: 64 GVISFYHDFKNHPPG-RHVLKLCRAEACQAMGADTLADHVREKLRVDWHGTTVNGSVTLE 122
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
V C G C AP M+ + + L + ++ ++++ +
Sbjct: 123 PVFCLGLCACAPAAMLDNELHGRLDQDHVDTLLESVA 159
>gi|262369336|ref|ZP_06062664.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
gi|262315404|gb|EEY96443.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
Length = 169
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + + I YP ++A + L Q + GWV A + +A +L ++ +
Sbjct: 17 LTTDEIHEIEHHIGHYP--YPRAASLDALKCVQRRNGWVDDAQLNAIAQLLTISVADLEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + PVG R + +C + C L G E L E + ++ + +DG +
Sbjct: 75 VATFYNRIYRQPVG-RNVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C P +M+ +DT+ + ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMVNEDTHGLVEVSSVKQLLEKY 168
>gi|239904884|ref|YP_002951622.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
[Desulfovibrio magneticus RS-1]
gi|239794747|dbj|BAH73736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
[Desulfovibrio magneticus RS-1]
Length = 171
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
+ + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + +
Sbjct: 37 QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
+C T C ++G +K++ + ++ DG S + + C G C AP+VM+G+
Sbjct: 96 SICMGTACFVKGADKVVNAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155
Query: 157 YEDLTPERLEEIIDAF 172
Y ++TP ++++I+ F
Sbjct: 156 YGNVTPGQVKKILADF 171
>gi|169831498|ref|YP_001717480.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638342|gb|ACA59848.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 155
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 20 EESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ ++ ++S R S++I +L Q+ G++ + + VA+ L ++ V
Sbjct: 2 PQQEPLLDRLVSYIEAHRGEPSSLIQVLSHVQQTVGYLPKPVLVEVADKLGLSLTEVYGT 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
A+FY F P G R + +C T C ++G + ++ K D S + V
Sbjct: 62 ASFYAFFTFRPRG-RHGIALCNGTACYVKGSAAVKVRLEQELGIKAGDTTPDRRFSLDVV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C AP++ + +D + + PE++ EI++ +
Sbjct: 121 RCIGCCALAPVMTVDEDVHAGVEPEKVPEILEQYK 155
>gi|126666307|ref|ZP_01737286.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
gi|126629108|gb|EAZ99726.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
Length = 174
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 3/166 (1%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
A + F E+ + Y + Q+A I L Q++ GWV AI +A
Sbjct: 11 AADLITTDGFQLHEDDRQAMLTERDHY--EQPQAACIEALKIVQKRHGWVPDGAIVAIAE 68
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
L + V +ATFY+ PVG R + +C ++ C L G E L EV ++
Sbjct: 69 TLGVGAGAVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTGYEALSEVLSERLGIGFGQ 127
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
DG + V C GAC P +MIG DT+ + + L+E+++A+
Sbjct: 128 TTGDGRFTLLPVCCLGACDRGPAMMIGDDTFGPIEADDLDELLEAY 173
>gi|303248402|ref|ZP_07334662.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
gi|302490200|gb|EFL50118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
fructosovorans JJ]
Length = 165
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 3/166 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ + + +I++ + A + ++ Q G++ A+ + +L M + +
Sbjct: 1 MALPDALVADLKRMIAQ--AEHPREAAVDVMYALQHHYGYLCDEAVHYASKLLGMTTLEL 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY PVG + VC + C + + + + + P DG +
Sbjct: 59 ESLATFYDYLYRRPVG-HYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGMFTV 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
C G C NAP ++I Y LTPER++ ++ + +R
Sbjct: 118 LPSACIGNCHNAPTMLINGRFYNKLTPERIDAVLRELRETTEEPVR 163
>gi|114566321|ref|YP_753475.1| NADH dehydrogenase I subunit E [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337256|gb|ABI68104.1| NADH dehydrogenase I chain E [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 148
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
++I+ Y + +I Q + ++ + A+ A + ++ + +ATFY+
Sbjct: 5 QDIIANYKD--KKGGIIEAYHALQREFNYIPQKAVAEAARVFGVSEAQAYGVATFYSYLS 62
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ G + +++C + PC + G +K+++ + + K +DG + E EC G C
Sbjct: 63 VEKRG-KYIIRMCESAPCHVAGADKVLKAMEDYLGIKVGETTADGKFTLELCECVGQCQA 121
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
P++ + +++ E++ EI+ A+
Sbjct: 122 TPVITVNSQPVFNVSSEKIPEILSAYK 148
>gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
gi|85723969|gb|ABC78912.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
Length = 150
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++++I ++ SA+I +L+ QE+ W+ + A++ V+ L + V ATFY
Sbjct: 4 ERIDQIIEKH--HGASSALIQILLDIQEENHWLPKEALDRVSEKLQVPLTTVRHAATFYK 61
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G R V VC T C +RG ++++ KP + D S E V C G
Sbjct: 62 VFSTVPKG-RHQVHVCLGTACHVRGANRVLDTVEEMTGIKPGETDLDLKFSLETVNCLGC 120
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C P++ I Y TP + +++ +
Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149
>gi|148653493|ref|YP_001280586.1| NADH dehydrogenase subunit E [Psychrobacter sp. PRwf-1]
gi|148572577|gb|ABQ94636.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter sp. PRwf-1]
Length = 170
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + ++E I YP ++A + L Q++ GWV+ A + +AN+LD+ +
Sbjct: 18 LTAQEIEGIHEYIHHYP--HARAASLDALKLVQKRNGWVNDAQVNAIANLLDVPVTDIEG 75
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ + SPVG R + VC + C L G E+L + + + +DG +
Sbjct: 76 VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEELAAELKTTLGIEFGQTTADGRFTLLP 134
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ C G C P V+I +DT+ ++P + E+++
Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVSPSEVAELLE 167
>gi|71280180|ref|YP_270680.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
gi|71145920|gb|AAZ26393.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
34H]
Length = 163
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+++ + +I ++ A++P+L Q ++ A+ ++A L+++ V +
Sbjct: 5 NDKGLQQIATIIEQH--QTLPGAMLPILHAIQNDLSFIPSNALPLIAKALNVSKAEVHGV 62
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F+ G +++C C G L E + + + D + E V
Sbjct: 63 ISFYHHFRTEEPGA-HVIEICRGESCQAMGSRALEENIKQNLSIDYHQTSKDRQYTLEPV 121
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C +P + IG D + +L ++ E+II +
Sbjct: 122 YCLGNCACSPAMRIGDDIHGELDLQKFEQIIASL 155
>gi|126463499|ref|YP_001044613.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
17029]
gi|126105163|gb|ABN77841.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides ATCC 17029]
Length = 157
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E V++++ + + ++P+L QE G V ++ +A L+++ V +
Sbjct: 6 AEVHARVDDILDAH--EGLEGPLLPILNAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F+ P R +++C C G ++L E + ++ +DG ++ E V
Sbjct: 64 SFYHDFRTRP-HGRHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P ++ + RLE I++
Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157
>gi|300854658|ref|YP_003779642.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
13528]
gi|300434773|gb|ADK14540.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
13528]
Length = 160
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
E ++ I + ++I +L RAQ+ G++ +AN LD++ +V
Sbjct: 5 KLDNEKLKELSSYIDS--LEEKEGSLISVLHRAQDIFGYLPEELQTFIANKLDISAAKVF 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+ F + P G + + +C T C ++G E ++E RN++ K DG + +
Sbjct: 63 GVVTFYSYFTMKPKG-KHVISICMGTACFVKGAENILEEFRNQLKVKDGFTTEDGLFTID 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP+V++ + + E ++ I+ +
Sbjct: 122 ILRCVGACGLAPVVVVDGTVHGKVKVEDVKGILSQY 157
>gi|163857996|ref|YP_001632294.1| formate dehydrogenase subunit gamma [Bordetella petrii DSM 12804]
gi|163261724|emb|CAP44026.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
petrii]
Length = 188
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A++P+L Q++ G + A+ +A L+++ V + TFY F+ P R ++
Sbjct: 47 QPGALLPILHAVQDELGCIPADAVPAIAEALNLSRAEVHGVLTFYPHFRTEP-AGRHVLE 105
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC C G E+L E R + ++DG ++ E V C G C +P VM+ +
Sbjct: 106 VCRAESCQAMGGERLAEHARETLGCDFHGTSADGAVTLEPVYCLGLCAQSPAVMLDGQPH 165
Query: 158 EDLTPERLEEII 169
+TP++L ++
Sbjct: 166 ARVTPDKLGRLL 177
>gi|300023971|ref|YP_003756582.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525792|gb|ADJ24261.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 176
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 4 RRLAEEEFQPSSFSFSEES--AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
+++ + + + I + +R+ ++ + Q G+V +
Sbjct: 3 KKVGRSPKGDTKPEITPTTPVQIAAAAICARH--GNKPDELLEIFHEMQHDLGYVPEETL 60
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
++A L+ + + + TFY +F PVG + V++C C G ++L + +K++
Sbjct: 61 PIIAKALNRSRAEIYGVLTFYHEFHRHPVG-KHVVKICRAEACQSMGTDELCQHAESKLN 119
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+DG ++ E+V C G C +P VM+G+ Y + P+R +EII
Sbjct: 120 VPLGGTTADGAVTIEQVFCLGNCALSPAVMVGEKLYGRVDPKRFDEIIAGLEK 172
>gi|206602056|gb|EDZ38538.1| Putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
sp. Group II '5-way CG']
Length = 168
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + + E+ + S + AV+ +L + QE+ G+V A+E V IL++ ++ +
Sbjct: 8 EVTYEDIEEICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF P G + ++VC T C +RG L++ + ++H +P D + E V
Sbjct: 66 TFYSQFYQEPRG-KFVLKVCVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G+C APM M+ Y L+ +++ +I F
Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQF 157
>gi|281357445|ref|ZP_06243933.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
gi|281316048|gb|EFB00074.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
vadensis ATCC BAA-548]
Length = 150
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
R S +I L Q EG+VS +I ++ + + V + +FY QF+ +
Sbjct: 12 GREPSNLIKGLQAVQGVEGYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRV-KPGKYK 70
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C T C ++G + E + + + G S E V C G C AP++ +
Sbjct: 71 IAICDGTACHIKGSPLVQEWVSRALGIEDGQTDERGHFSLETVACLGCCSLAPVMSVNGR 130
Query: 156 TYEDLTPERLEEIIDAFST 174
Y L + +I+ +
Sbjct: 131 VYGKLDRKSTIKILKEYEA 149
>gi|254469432|ref|ZP_05082837.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
JE062]
gi|211961267|gb|EEA96462.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
JE062]
Length = 158
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S++ +I + + ++P+L Q + G+V A+ +A+ L+++ V
Sbjct: 7 SQDIEKDTAAIIDVH--EHQEGPLLPILHDVQAKFGYVPEDALLQIADRLNLSRAEVHGT 64
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F+ P R ++VC C G EKL E + + K DG ++ E V
Sbjct: 65 MSFYHDFRTEP-AGRHVLKVCRAEACQSLGGEKLAEDIQRDLGIKWHETTPDGKVTLEPV 123
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C AP M+ + + L + ++++
Sbjct: 124 YCLGLCSCAPAAMMDGNLHGRLDEAAVLKLVEEVK 158
>gi|270308047|ref|YP_003330105.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
gi|270153939|gb|ACZ61777.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
Length = 157
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
V +++++Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+
Sbjct: 12 KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G + + VC T C +RG K+++ K+ D S + V C GAC
Sbjct: 70 FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
P+V++ ++T E+++ +I+
Sbjct: 129 ALGPVVVVDGQYMGNMTTEKVKPLIEGCQ 157
>gi|73748524|ref|YP_307763.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|147669305|ref|YP_001214123.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|289432571|ref|YP_003462444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|146270253|gb|ABQ17245.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|288946291|gb|ADC73988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
Length = 157
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
V +++++Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+
Sbjct: 12 KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G + V VC T C +RG K+++ K+ D S + V C GAC
Sbjct: 70 FSLKPKG-KHSVHVCMGTACHVRGASKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
P+V++ ++T E+++ +I+
Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQ 157
>gi|225849103|ref|YP_002729267.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644487|gb|ACN99537.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 160
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+++ +++ + R+P AVI L + ++ ++ +++ L + +
Sbjct: 6 LTQDIKERIDKYLERFPVKEQ--AVIQSLHLIYSKYRDITLEHMQELSDYLQVPLAHIEG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I +FY F++ R H++VC PC + GC+KL+E+ +K + +G E
Sbjct: 64 IVSFYDMFRVKRN-ARHHIRVCKNLPCHIMGCKKLLELFEKLTGEKANEESKNGRFYIET 122
Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
VEC G+C AP MI D Y+ + +L EI+ +
Sbjct: 123 VECIGSCSVAPAFMIDDDLYDGTKINEGKLNEILSKY 159
>gi|77919235|ref|YP_357050.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
2380]
gi|77545318|gb|ABA88880.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
Length = 172
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++ +L +AQ G++ + E VA+ +D + +V + +FYT F + P G + +
Sbjct: 38 KEGHLVTVLHKAQSLFGYLPKEVQEFVADQMDESLAKVYGVVSFYTFFTMIPKG-KHPIS 96
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G +K+++ + ++ DG S + + C GAC AP+V++G+ Y
Sbjct: 97 VCMGTACFVKGADKVVDALKQQLGVTVSEVTKDGKFSIDCLRCVGACALAPVVLVGEKVY 156
Query: 158 EDLTPERLEEIIDAFS 173
++TP+++++I+ F+
Sbjct: 157 ANVTPDQVKDILADFA 172
>gi|328543745|ref|YP_004303854.1| ATP synthase subunit E [polymorphum gilvum SL003B-26A1]
gi|326413489|gb|ADZ70552.1| ATP synthase subunit E [Polymorphum gilvum SL003B-26A1]
Length = 157
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L QE+ GW+ AA+ +A L++ V +ATFY F+ P R +++
Sbjct: 23 EGPLLPILHEVQEEFGWLPPAALRTIAEGLNLGRAEVHGVATFYHDFRTEP-AGRHRLKI 81
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G E++ E R ++ +DG+++ E V C G C AP M+
Sbjct: 82 CRAEACQAMGGERIAERARAELGLDWHETAADGSVTLEPVYCLGLCACAPAAMVDDRLEG 141
Query: 159 DLTPERLEEIIDAFS 173
L +R I+
Sbjct: 142 RLDADRFARILAEVR 156
>gi|88602557|ref|YP_502735.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88188019|gb|ABD41016.1| NADH dehydrogenase subunit E [Methanospirillum hungatei JF-1]
Length = 160
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++E+I +YP + +L Q QE + +++V+ LD+ + + TF
Sbjct: 2 DEKRLDEIIEKYP--YPAGRTLGVLREIQIQERHIPMDTLKLVSEKLDLPLSELFALVTF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-------KPLHRNSDGTLS 134
Y+ F L PVG + VC TPC ++G EK++E + K L D +
Sbjct: 60 YSFFSLKPVGE-HLITVCMGTPCHVKGAEKILETLEEHLGLSGEVQDGKYLQTTPDNKFT 118
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
E C GAC AP++ + + + +TPER+ EI++ +
Sbjct: 119 VEIARCFGACSMAPVLHVDGELHGYVTPERIPEILEMY 156
>gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
eutropha H16]
Length = 176
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +++ A++P+L Q+ +G++ AA+ V+A L+++ V + TFY
Sbjct: 16 RIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVITFYHH 73
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F R VQVC C G E L E + + +DG ++ E V C G C
Sbjct: 74 F-RQQPAGRHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQC 132
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
P VM+G+ + + R + ++ +
Sbjct: 133 ACGPAVMVGEQLHGYVDARRFDALVRSLRE 162
>gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
testosteroni S44]
gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
testosteroni S44]
Length = 721
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V I+++ + ++I LL Q G++ RAA+ V+A L+++ V + ++
Sbjct: 27 EREAVEHAIAKH--ASRPGSLIELLHSLQNALGFIPRAAVPVIAEALNLSRAEVHGVVSY 84
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y R +Q+C C RG + L + + + ++DG+++ E V C
Sbjct: 85 YPHL-REQPHGRTLIQICRAEACKSRGGDALFAHAQATLGCQAHGTSADGSVTLEPVYCL 143
Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
G C +P VM+ + + + +T +RL+ +++ + +T
Sbjct: 144 GLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 182
>gi|297616329|ref|YP_003701488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
lipocalidus DSM 12680]
gi|297144166|gb|ADI00923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
lipocalidus DSM 12680]
Length = 148
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+I++Y +I Q+++ ++ AI A ++ +ATFY+ F
Sbjct: 5 KAIIAKYKDL--PGGIIEAYHAIQKEQSFIPEEAIIAAAEAFNIPVKDAYGVATFYSMFS 62
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ G + +++C + PC + G +++ ++ K DG + E EC G C
Sbjct: 63 VKTRG-KNVIRICESAPCHIAGAAQVVAALEKELGIKMGETTPDGKFTLEFTECVGQCQA 121
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
P++ I Y D+TPE++ I+ +
Sbjct: 122 TPVITINGKPYGDITPEKIPAILAEYK 148
>gi|170727207|ref|YP_001761233.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
ATCC 51908]
gi|169812554|gb|ACA87138.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
ATCC 51908]
Length = 179
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
S S + ++E+IS P + I L Q + GWVS A++ ++ + +
Sbjct: 20 SLSSKEQQGIDELISHSP--QLAGITIDALKLIQAERGWVSDASLHALSLYTQIPVADLD 77
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ATFY PVG + C C L G E + + + +++ +D +
Sbjct: 78 SVATFYNLIFRQPVGKV-VLHPCDGISCDLMGGEHIRQCLKQQLNITAGETTTDNRFTLI 136
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C GAC AP+++ K +E++T + L +++
Sbjct: 137 PLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTL 172
>gi|319779886|ref|YP_004139362.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317165774|gb|ADV09312.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 159
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
QP+S + +A + E+ + ++P+L QE+ G V + A+ V+A L+++
Sbjct: 4 QPASTEITSRTAAIIQEMKGL------EGPLLPILHGIQEEFGHVPKDALPVIAEALNIS 57
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V + +FY + S R +++C C G + + + + DG
Sbjct: 58 RAEVHGVVSFYHDY-RSHPAGRHVLKLCQAESCQSMGSDAIAAKLKQLLGIGFHETTRDG 116
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+++ E V C G C +P M+ + L E+L+EI+
Sbjct: 117 SVTLEPVYCLGLCACSPAAMLDGEVIGRLDDEKLDEIVAE 156
>gi|157364375|ref|YP_001471142.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
lettingae TMO]
gi|157314979|gb|ABV34078.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
lettingae TMO]
Length = 164
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++E I+ +I +L +AQE G++S +A +L + +V + TFY
Sbjct: 13 KELDEYIAS--TGAKPDKLISVLQKAQELFGYLSPEVQNHIAEMLKIPVSQVYGVVTFYN 70
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P G V+VC T C ++G +++ E ++ DG S V C GA
Sbjct: 71 FFSTRPKGKV-QVKVCLGTACYVKGADRIFERFLEELATSAEEPTKDGQFSVHAVRCLGA 129
Query: 144 CVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174
C AP+V++G KD Y + P+ + II+ +
Sbjct: 130 CSMAPVVLVGEKDFYGRVKPDMVPRIIEKYRE 161
>gi|207723877|ref|YP_002254275.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
gi|207742739|ref|YP_002259131.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
IPO1609]
gi|206589082|emb|CAQ36044.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
gi|206594133|emb|CAQ61060.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
IPO1609]
Length = 141
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
+ L AQ ++GWVS ++ VA L+M + V E+ATFY + PVG R + VC
Sbjct: 1 MAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLSVCTNL 59
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLT 161
PC L G E+ + + K+ +DG + +E EC GAC +AP++++ ++
Sbjct: 60 PCALSGGERAADYLKQKLGIGFNETTADGNFTLKEGECMGACGDAPVMIVNNTHMCSFMS 119
Query: 162 PERLEEIIDAFST 174
E+L+ +I
Sbjct: 120 NEKLDALIADLQA 132
>gi|332295876|ref|YP_004437799.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
narugense DSM 14796]
gi|332178979|gb|AEE14668.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
narugense DSM 14796]
Length = 156
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ V+ I + ++I +L QE G++ + +A L+++ ++ + TF
Sbjct: 5 NFPAVDREIKK--WGLRSESLIQILHGTQESIGYLPEEILSYIAEKLNISLSKIYGVVTF 62
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+L + C T C ++G EK++ NK++ KP D + + V C
Sbjct: 63 YNFFKL-TKDAEHVITTCLGTACYVKGGEKILNALCNKLNIKPNEITKDNKFTVKTVRCV 121
Query: 142 GACVNAPMVMIG-KDTYEDLTPERLEEIIDAF 172
G C AP+++I KD Y L+ EI++ +
Sbjct: 122 GCCGFAPVMIIDGKDIYGKLSENEAIEILERY 153
>gi|257453970|ref|ZP_05619246.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
SK60]
gi|257448635|gb|EEV23602.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
SK60]
Length = 169
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E ++E + YP SR +A + L Q + GWV A + +ANIL + V
Sbjct: 17 LTEAEIHDIHEFMHHYPQSR--AASLDALKIVQRRNGWVDDAQVNAIANILKIPVTDVEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY + SPVG R + VC + C L G E L + + D +
Sbjct: 75 VATFYNRIYRSPVG-RHVILVCDSIGCYLVGAENLGQAFERTLGISFGQTTPDNRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C P V+I +DTY + E + E+++ ++
Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQIEEIAELLEQYA 169
>gi|113866667|ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
eutropha H16]
gi|113525443|emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
eutropha H16]
Length = 176
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +++ A++P+L Q+ +G++ AA+ V+A L+++ V + TFY
Sbjct: 16 RIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVITFYHH 73
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F R VQVC C G E L E + + +DG ++ E V C G C
Sbjct: 74 F-RQQPAGRHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQC 132
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
P VM+G+ + + R + ++ +
Sbjct: 133 ACGPAVMVGEQLHGYVDARRFDALVRSLRE 162
>gi|197117836|ref|YP_002138263.1| benzoyl-CoA reductase electron transfer protein [Geobacter
bemidjiensis Bem]
gi|197087196|gb|ACH38467.1| benzoyl-CoA reductase electron transfer protein, putative
[Geobacter bemidjiensis Bem]
Length = 152
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ +I ++ + QS++I +L+ Q + W+ + A++ V LD+ R+ I TF
Sbjct: 4 DISKIDNIIDKH--NAEQSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTF 61
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F P G R + VC T C +RG +++++ + I K ++D S E V C
Sbjct: 62 YKAFSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDADLKFSLETVNCL 120
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P+++I + + ++ P + E++ +
Sbjct: 121 GCCALGPVMVIDGEYHGNVAPAQSAEVLKNY 151
>gi|225175950|ref|ZP_03729942.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225168538|gb|EEG77340.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 182
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++ ++ R+ + IP+L Q G+V+ ++ V+ + + + I TFY
Sbjct: 18 LLAIDAIVQRHNAD--PGSAIPILQDIQNTFGYVAPEVLQRVSELSGILESELYSIVTFY 75
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+QF++ P+G +QVC T C L G E++ E ++ K + DG + E+V C G
Sbjct: 76 SQFRMEPIGE-NLIQVCHGTACHLAGAERVSEAIMHETGAKDGGTSPDGKFTLEKVACLG 134
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
C AP++ + ++TY + P + +++ GQ + + G
Sbjct: 135 CCSLAPVITVNEETYGRVAPNEVGKVLKEI-NGQTEDKKAG 174
>gi|13474500|ref|NP_106069.1| formate dehydrogenase subunit gamma [Mesorhizobium loti MAFF303099]
gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrogenase gamma subunit [Mesorhizobium
loti MAFF303099]
Length = 159
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
QP+S + +A + E+ + ++P+L Q++ G V +AA+ V+A+ L+++
Sbjct: 4 QPASTEIASRTAAIIQELKGL------EGPLLPILHEIQDEFGHVPQAALPVIADGLNLS 57
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V + TFY F + R +++C C G + + + + DG
Sbjct: 58 RAEVHGVVTFYHDF-RARPAGRHVLKLCQAEACQSMGSDAVAAKIKQLLGIGFHETTRDG 116
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+++ E V C G C +P M+ + L ++++EI+ +
Sbjct: 117 SVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEILAEVRS 159
>gi|119385583|ref|YP_916638.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Paracoccus
denitrificans PD1222]
gi|119376178|gb|ABL70942.1| formate dehydrogenase gamma subunit [Paracoccus denitrificans
PD1222]
Length = 159
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + ++E+I+ + + ++P+L Q + G+V A V+A L M V +
Sbjct: 7 DADFLLRLDEIIAAH--KGREGPLLPILHDLQAEWGYVPEEAQPVLAEALGMTRAEVHGV 64
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F R +++C C G E L + R + DG L+ E V
Sbjct: 65 VSFYHDF-RDHPHGRHVLRLCRAEACQSMGAEALADEVRAALGIDWHETTPDGRLTLEPV 123
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C AP +G+ + ++++++
Sbjct: 124 FCLGLCACAPSAQMGERLIGRASLAKVQKLVAE 156
>gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
Length = 638
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVL 76
+ E+ + EVI+ + + ++ +L + G +S + VA +++ V
Sbjct: 33 TTEN---IQEVINN--RGKAREHLMAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVA 87
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
FYT F P + ++VC + PC + G + + + P +DG E
Sbjct: 88 GFVGFYTMFSTRPR-AKFLIRVCKSGPCHVMGARTIFDYVEKHLGISPGQTTADGLFHLE 146
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-G 195
EC G C AP +MI D + +LT ER+ I+D + + + P + P
Sbjct: 147 ACECLGICSVAPAMMINYDLHGNLTEERIATILDGYRSRE-------PFFG-EACGPEVE 198
Query: 196 GLTSLLDNNS 205
G +LD
Sbjct: 199 GRVCMLDEPG 208
>gi|160936611|ref|ZP_02083978.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
BAA-613]
gi|158440402|gb|EDP18147.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
BAA-613]
Length = 164
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVL 76
S+ +A +I + ++ +L Q G+ + +VA + M RV
Sbjct: 5 SQLTAEEKRAIIRD--NGGDKEHLLAILYELQNASGYNYIDEETAALVAEEVGMNPTRVY 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+I TFY + P R ++VC +TPC E++ ++ + ++ DG ++
Sbjct: 63 DIITFYAMLKTEPK-ARYVLKVCNSTPCHFSRSEEIAQILKEELGVGIGETTEDGVFAYH 121
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ C GAC P++ + Y +L ++ +++ +G+
Sbjct: 122 YIPCVGACDIGPVIKVKDTVYGNLDRRKIRQLLADLRSGK 161
>gi|312879270|ref|ZP_07739070.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
paucivorans DSM 12260]
gi|310782561|gb|EFQ22959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
paucivorans DSM 12260]
Length = 162
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++ RYPP ++ +L Q ++ R + VA L + RV +ATFY
Sbjct: 15 LEALLRRYPPHPRY--LLAILQDVQSACRFLPRTVLGRVAEYLRVPESRVFGVATFYKAL 72
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L+P G + V+VC T C LRG K++E + + DG S E V C GAC
Sbjct: 73 SLTPRGRK-TVKVCMGTACHLRGAPKVLEALEAALGIRSGGTTEDGAFSLETVNCLGACA 131
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
AP+V + Y ++P +++ +++
Sbjct: 132 LAPVVTVEDTPYGTMSPAKVQAMLEE 157
>gi|301061250|ref|ZP_07202032.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
gi|300444569|gb|EFK08552.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
Length = 165
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ + + I R Q+ I ++ Q+ G++S A+ A++L M + + E+A
Sbjct: 5 EDKKEELQKQILEGEAPREQA--INVMFALQKCYGYLSDEAVAEAAHMLGMTTLEIEELA 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY PVGT + VC ++ C + G E +++ K+ P +DG + V
Sbjct: 63 TFYDFLYREPVGT-YVIHVCDSSICWMYGEETVMDYLVKKLAITPGETTADGLFTILPVC 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C G C +AP+++I Y LTPE ++ I++ +
Sbjct: 122 CVGYCDHAPVMLINGKPYGPLTPEYIDRILEDIRVRHPE 160
>gi|319789710|ref|YP_004151343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
ammonificans HB-1]
gi|317114212|gb|ADU96702.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
ammonificans HB-1]
Length = 160
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 20 EESAIWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
EE V E++S RYP +S +P L A++ + + ++A+ L++ + V E
Sbjct: 4 EEFREAVKELVSSGRYPS--KKSCTLPALWIAEKNFPRIDHEIMRIIASELEIPLVEVEE 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
A FY F P G + ++VC CML G E+++E + P DG + EE
Sbjct: 62 AAEFYAMFHTKPKG-KYVIRVCTNLSCMLNGAEEIVEELSRLLGISPGETTPDGLFTLEE 120
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
EC G C AP + + ++ + ++T E+L I++ F
Sbjct: 121 YECMGLCDGAPALTVNEERFLNVTKEQLPAILEKF 155
>gi|241206611|ref|YP_002977707.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860501|gb|ACS58168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 159
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
Query: 24 IWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+I+ R+ ++P+L Q++ G+V + A+ V+A L+++ V + TF
Sbjct: 12 ARTRAIIADLRFLEGP----LLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y + R +++C C G + L E + + DG ++ E V C
Sbjct: 68 YHDY-RDHPAGRHVLKLCRAEACQSMGGDALAERVKALLGIDFHQTTLDGGVTLEPVYCL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
G C AP VM+ + Y + + E++
Sbjct: 127 GLCACAPAVMLDGEVYGRVDDQTAAELVAEAR 158
>gi|150398097|ref|YP_001328564.1| formate dehydrogenase subunit gamma [Sinorhizobium medicae WSM419]
gi|150029612|gb|ABR61729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
medicae WSM419]
Length = 159
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
R + +IP+L Q++ G+V ++ V+A L+++ V + TFY F R
Sbjct: 22 KRLEGPLIPILHEIQDEFGYVPEESLPVIAQELNLSRAEVYGVVTFYHDF-REHPAGRHV 80
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+++C C G ++L E + + DG ++ E V C G C +P M+ +
Sbjct: 81 LKLCRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGE 140
Query: 156 TYEDLTPERLEEIIDAFST 174
+ L L+ ++
Sbjct: 141 LHARLDEAVLDALVAEARQ 159
>gi|116254126|ref|YP_769964.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
viciae 3841]
gi|115258774|emb|CAK09880.1| putative NAD-dependent formate dehydrogenase gamma subunit
[Rhizobium leguminosarum bv. viciae 3841]
Length = 159
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L Q++ G+V + A+ V+A L+++ V + TFY + R +++
Sbjct: 25 EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDY-RDHPAGRHLLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L E + + DG ++ E V C G C AP M+ + +
Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTPDGGVTLEPVYCLGLCACAPAAMLDGEVHG 143
Query: 159 DLTPERLEEIIDAFS 173
+ +R E++
Sbjct: 144 RVDEQRAAELVAEAR 158
>gi|71892263|ref|YP_277997.1| NADH dehydrogenase subunit E [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|71796369|gb|AAZ41120.1| NADH dehydrogenase I chain E [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 173
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 1 MSVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
MS ++ + +S F S+E + E + Y R S I L Q+ GWV
Sbjct: 1 MSNIKINDMSTSLTSNGFFQLSQEECNAIQEECTHYEDMRAVS--IEALKIIQKNHGWVP 58
Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
AI ++A IL ++ + +ATFY Q PVG R ++ C + C L GCEK+
Sbjct: 59 DEAIILIAKILCISAADLEGVATFYNQIFRQPVG-RHIIRYCDSAVCYLVGCEKIKNTLT 117
Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
++ SD + C G C AP++MI KD Y + PE + +++ +
Sbjct: 118 YLLNITVGSTTSDNRFTLLPTCCLGICDKAPVIMIDKDIYPYIVPETITKLLGQY 172
>gi|150388473|ref|YP_001318522.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
gi|149948335|gb|ABR46863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
metalliredigens QYMF]
Length = 169
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E + I P + +I +L +AQ+ G++ R VA L ++ +V +
Sbjct: 19 KEKYQELEAYIDDLPSLEGR--LIQILHKAQQIFGYLPRDIQLFVARRLGISGAKVNGVI 76
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F P G + VC T C ++G K+IE ++++ K D + ++V
Sbjct: 77 TFYSYFTQEPRGE-HTINVCTGTACFVKGIGKIIEELESQLNIKLGKTTEDMKFTLKDVR 135
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP++++ + Y + PE +E+I+ +
Sbjct: 136 CVGACGLAPLIVVDEKVYGRVKPEDVEKIMSEY 168
>gi|283853100|ref|ZP_06370355.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
FW1012B]
gi|283571498|gb|EFC19503.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
FW1012B]
Length = 171
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
+ Q ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + +
Sbjct: 37 QKQGHLVTVLHKAQSVFGYLPIEVQQFVADYMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
VC T C ++G +K++ + ++ DG S + + C G C AP+VM+G+
Sbjct: 96 SVCMGTACFVKGADKVVRAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155
Query: 157 YEDLTPERLEEIIDAF 172
Y ++T ++++I+ +
Sbjct: 156 YGNVTAGQVKKILADY 171
>gi|124515812|gb|EAY57321.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
rubarum]
Length = 168
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + + ++ + S + AV+ +L + QE+ G+V A+E V IL++ ++ +
Sbjct: 8 EVTYEDIEDICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF P G + +++C T C +RG L++ + ++H +P D + E V
Sbjct: 66 TFYSQFYQEPRG-KFVLKICVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G+C APM M+ Y L+ +++ +I F
Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQF 157
>gi|220931144|ref|YP_002508052.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
gi|219992454|gb|ACL69057.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
Length = 136
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
+ L QE G++S I ++ M R+ + FY+ F PVG + V+VC +
Sbjct: 7 LERLHNIQETYGFISEGEIRKLSQEYKMPRARIYGVIRFYSMFYTEPVG-KYIVRVCDSL 65
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
C + E ++EV ++ + K D + E VEC G C P++M+ Y ++P
Sbjct: 66 SCHINDSEGIVEVVKDYLGIKNGETTEDKKFTLEVVECLGHCGEGPVMMVNDRIYTRVSP 125
Query: 163 ERLEEIIDAF 172
EI+
Sbjct: 126 NMALEILRDC 135
>gi|77917823|ref|YP_355638.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
gi|77543906|gb|ABA87468.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
Length = 162
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
SE+ + + P R V+ +L Q+ GWVS +E+ A IL ++ ++V E
Sbjct: 5 LSEKQIAQLKRRVKETPHPRE--MVLDVLHAIQDANGWVSDEGVELAAIILGLSPLQVEE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
IATFY + PVG + + VC + C RG E L+ + + P +DG +
Sbjct: 63 IATFYDKIYRCPVGRK-VIHVCDSICCWSRGGEALMLRLQQLLGIAPGETTADGMFTLLP 121
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C GAC AP V IGK Y + E+LE I+D+
Sbjct: 122 TCCLGACGEAPAVRIGKTLYGQVALEQLESILDS 155
>gi|332529345|ref|ZP_08405306.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
gracilis ATCC 19624]
gi|332041143|gb|EGI77508.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
gracilis ATCC 19624]
Length = 160
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S E V V+ S+ A++P+L Q+Q G++ + +A L+++ V +
Sbjct: 14 SPEQRAAVRAVLDA--RSQQAGALLPILHDIQDQLGYIPADVVVDIAEALNVSRAEVHGV 71
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
T+Y F+ P A VQVC C G E L E K + ++ E V
Sbjct: 72 ITYYHHFRSEP-ARGAVVQVCRAEACQSCGSEALWEHASKK--------AAGQNVTLEPV 122
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C AP V I + +TP + + ++
Sbjct: 123 YCLGLCATAPAVQIQDKFHARVTPTKFDRLLAQLKE 158
>gi|223984600|ref|ZP_03634727.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
12042]
gi|223963447|gb|EEF67832.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
12042]
Length = 164
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E+S ++ ++ R+ V +L Q++ G++ A+E +A ++ V
Sbjct: 3 KLNEQSVQVIDRIVDRH--RGRPGPVKLMLHDVQKELGYIPFEAMEKIAAASGVSAAEVY 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFYTQF P G + + VC T C ++G L++ + K ++DG S +
Sbjct: 61 GVVTFYTQFTTEPKG-KHVINVCMGTACYVKGSADLLQRICDLTGTKVNQTSADGLFSLD 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLT-----PERLEEIID 170
C GAC AP+ ++ Y + T +R++ II
Sbjct: 120 ATRCLGACGLAPVAILDDQVYGNATSSTALEDRIKAIIK 158
>gi|301063637|ref|ZP_07204151.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
gi|300442285|gb|EFK06536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
Length = 175
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ +I +L Q ++ + + +A + + R+ +ATFY+ F L P G +
Sbjct: 31 GNDKENLIMILQAIQAAYNYLPQPVLAYLAEKIGIPLSRIYGVATFYSTFSLEPRG-KNI 89
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C T C +RG K+++ + +H DG + E V C G C P+V I +D
Sbjct: 90 INICLGTACHVRGAGKVLQRIEDTLHVDNGKTTEDGQFTLESVRCIGCCSLGPVVKINED 149
Query: 156 TYEDLTPERLEEIIDAF 172
Y + E L++I+D +
Sbjct: 150 VYGRIGSEDLDKILDHY 166
>gi|218508847|ref|ZP_03506725.1| NADH dehydrogenase subunit E [Rhizobium etli Brasil 5]
Length = 249
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 62/90 (68%), Positives = 68/90 (75%)
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
++GTLSWEEV C GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I+PG QIDR
Sbjct: 1 AEGTLSWEEVVCLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASIKPGTQIDR 60
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
I SAP GG TSL K R + KK D S
Sbjct: 61 IFSAPEGGPTSLTTEEPKARTRAKKADAES 90
>gi|222053344|ref|YP_002535706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
gi|221562633|gb|ACM18605.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
Length = 150
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++++I + S++I +L+ Q + W+ + +E V+ L++ ++ I TF
Sbjct: 2 DRDRIDQIIDTH--GCKASSLIQILIAIQSENHWLPKEVLERVSERLNVPMNQIQHITTF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F L P G R V VC T C +RG + +++ + KP + D S E V C
Sbjct: 60 YKSFSLVPKG-RHEVHVCMGTACHVRGAQGVLDTVEDVTGIKPGETDVDLKFSLETVNCI 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++++ D + +L ++E+++ +
Sbjct: 119 GCCALGPVMVVDGDYHGNLAATQVEDVLKTY 149
>gi|225175971|ref|ZP_03729963.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225168559|gb|EEG77361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 155
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
E+ S+Y R + +IP+L Q G++ A+ +A + + +V +ATF+ Q
Sbjct: 7 KFQEIFSQYNGEREE--LIPILQDTQAIYGYLPEQAMRAIARFMRIPQSQVYGVATFFGQ 64
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F S G + ++VC T C ++G +L+E ++ D + S E V C GAC
Sbjct: 65 FYFSRRG-KHAIKVCLGTACHVKGAGRLMEAFEREMGIGCGCITDDYSFSLERVNCVGAC 123
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP+VM+G+D Y + +R++E++D ++
Sbjct: 124 AIAPVVMVGEDVYGHVESKRVKEVLDIYAKD 154
>gi|147677714|ref|YP_001211929.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
thermopropionicum SI]
gi|146273811|dbj|BAF59560.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
thermopropionicum SI]
Length = 192
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+++ +N +I + Q +I +L +AQ+ G++ +A L + V +
Sbjct: 32 DKNFNELNLIIESLAGDKGQ--LIRILQKAQDIFGYLPDDVQAFIAERLRVPVAEVNGVV 89
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+ F P G + + VC T C ++G +++++ + ++ DG + +
Sbjct: 90 TFYSLFSTRPKG-KYIINVCMGTACYVKGAQQVMDALKKRLKIDEGETTPDGLFTLKSTR 148
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
C GAC AP++ + + P +++E+I G+ +
Sbjct: 149 CVGACGLAPILAVNGKVQGMVDPGKIQELIKNCRKGEKNE 188
>gi|317404655|gb|EFV85051.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
xylosoxidans C54]
Length = 185
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
+++R ++P+L Q + G + A++ +A L+++ V + TFY F+
Sbjct: 39 RILARLKD--QPGPLLPVLHAVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRS 96
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P R ++VC C G E+L R + DG + E V C G C +
Sbjct: 97 EP-AGRHTLEVCRAESCQAMGGEQLAAHARQALGCDFHASTRDGDFTLEPVYCLGLCAQS 155
Query: 148 PMVMIGKDTYEDLTPERLEEII 169
P VM+ + +TP +L+ ++
Sbjct: 156 PAVMLDGQPHARVTPAKLDRLL 177
>gi|117620389|ref|YP_856315.1| NADH dehydrogenase subunit E [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561796|gb|ABK38744.1| NADH-quinone oxidoreductase chain e [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 180
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S+ + Y R +A I L Q+ GWV AI +A L + V
Sbjct: 28 LSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEG 85
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATFY+Q PVG R ++VC + C + G E+L+ + + P ++DG +
Sbjct: 86 VATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLLAGLKEVMDLAPGQTSADGRFTLLP 144
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V C G C P +MI DTY L L + ++A+
Sbjct: 145 VCCLGNCDKGPALMIDDDTYGGLDAVSLLKTLEAY 179
>gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus]
Length = 124
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+
Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGT 92
VA ILD++ +RV E+ATFYT F PVG
Sbjct: 95 KVAEILDVSPMRVHEVATFYTMFNRQPVGK 124
>gi|284042619|ref|YP_003392959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
DSM 14684]
gi|283946840|gb|ADB49584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
DSM 14684]
Length = 212
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + +++YP R SA IP L AQ+ GW S AIE VA ++ + + +A
Sbjct: 43 AELRTQIEAAMAKYPNFR--SAAIPALHAAQDLHGWCSPEAIEQVACVMRLTPGYLTAVA 100
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F++ PVG R V VC C LRG + ++ ++ D + E
Sbjct: 101 TFYDMFEMKPVG-RHRVYVCTNISCSLRGADSVLAAVQDAAG-------DDADFNVRPFE 152
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
C GAC APM + + L E+++ G+ + P Q+ R + A
Sbjct: 153 CLGACDIAPMASVNGEFVGPLDLADAEQLVADLREGR--EVLPAKQLSRRACA 203
>gi|260466531|ref|ZP_05812720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
opportunistum WSM2075]
gi|259029680|gb|EEW30967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
opportunistum WSM2075]
Length = 159
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
QP+S + +A V E+ + ++P+L QE+ G V + V+A+ L+++
Sbjct: 4 QPASTEIASRTAAIVQELKD------VEGPLLPILHGIQEEFGHVPHDVLPVIADGLNLS 57
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
V + TFY F + R +++C C G + + + + DG
Sbjct: 58 RAEVHGVVTFYHDF-RARPAGRHVLKLCQAEACQSMGSDAVAAKVKQLLGIDFHETTRDG 116
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+++ E V C G C +P M+ + L ++++EI+ +
Sbjct: 117 SVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIVAEVRS 159
>gi|331696854|ref|YP_004333093.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951543|gb|AEA25240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 158
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 25 WVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V E++ R + + ++P+L Q + G V + + ++A L+++ V + TFY
Sbjct: 9 RVAEIVGRIVEAHRGSRGPLLPILHAVQAELGHVPPSVVPLLAERLNLSRAEVHGVVTFY 68
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F + R V+VC C G + L+E + + DG ++ +EV C G
Sbjct: 69 RDF-RAAPPGRVTVRVCRAEACQAVGGQALLEHAVASLGVERGETTPDGAVTLDEVFCLG 127
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C P V +G + +TP RL+ +I
Sbjct: 128 NCALGPAVQVGDRLHGRVTPARLDALIGQCR 158
>gi|302337011|ref|YP_003802217.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
smaragdinae DSM 11293]
gi|301634196|gb|ADK79623.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
smaragdinae DSM 11293]
Length = 162
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E N +I + +R A+IP+L AQ G++ + ++ ++ L + Y V +
Sbjct: 7 KEMIDQTNAIIDSFLDTR--GALIPVLQNAQNLFGYLDQEVLKQISRRLQIPYSEVAGVV 64
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FY+ F P G V+VC T C +RG ++++ ++ + D S E
Sbjct: 65 GFYSYFSTVPRGE-HIVRVCLGTACYVRGGKEVLSALQDVLGIDVGETTEDRVFSLEIGR 123
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C GAC +P+VMI +D ++ + P + +I+ + T +
Sbjct: 124 CFGACGLSPVVMIDEDVHQRVKPATVRDILFPYRTKE 160
>gi|146305427|ref|YP_001185892.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
mendocina ymp]
gi|145573628|gb|ABP83160.1| formate dehydrogenase gamma subunit [Pseudomonas mendocina ymp]
Length = 164
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 18 FSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F+ E V EV++ + A++P+L Q++ G V + ++A L ++ V
Sbjct: 8 FAPEQCEAVTREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVH 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY F+ +P G + +++C C G + L +K+ DG+LS+E
Sbjct: 66 GVVSFYHDFRATPPGRQ-VLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFE 124
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
V C G C AP VM+ + + + E + ++
Sbjct: 125 PVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159
>gi|15679544|ref|NP_276661.1| NADH dehydrogenase subunit E [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, subunit A [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 149
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + + Y S +IP+L Q+ G++ A+E VA+ ++ + +ATFY
Sbjct: 3 EELKRIFAGY-TGHK-SEIIPILQDIQDAYGYLPEDALEEVASFTGVSRAHLYGVATFYA 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF+ P G + + VC T C + G E++++ + + D S E V C G
Sbjct: 61 QFRFKPRGRKH-IMVCTGTACHVSGAEQVLDALERHLGIEEGDVTDDMEYSLESVGCIGC 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168
C AP M+ + + P R+ +I
Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVGKI 144
>gi|253701407|ref|YP_003022596.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
gi|251776257|gb|ACT18838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
Length = 152
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ +I ++ + QS++I +L+ Q + W+ + A++ V LD+ R+ I TF
Sbjct: 4 DIAKIDNIIDKH--NAEQSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTF 61
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F P G R + VC T C +RG +++++ + I K +++ S E V C
Sbjct: 62 YKAFSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDAELKFSLETVNCL 120
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P+++I + + ++ P + E++ +
Sbjct: 121 GCCALGPVMVIDGEYHGNVAPAQSAEVLKNY 151
>gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum
seropedicae SmR1]
gi|300073591|gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein
[Herbaspirillum seropedicae SmR1]
Length = 158
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V +I+ A++P+L QE+ G++ A+ ++A L+++ V + +F
Sbjct: 8 DVAAVRGIIAE--RKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F R VQVC C RG E L E +N + ++DG + E V C
Sbjct: 66 YHFF-RQEPAGRHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C P + + + + + ++ + +I A
Sbjct: 125 GQCAIGPNLTLDDELHARVDADKFKRLIQAKRE 157
>gi|311108351|ref|YP_003981204.1| NAD-dependent formate dehydrogenase subunit delta [Achromobacter
xylosoxidans A8]
gi|310763040|gb|ADP18489.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
xylosoxidans A8]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
+++R ++P+L Q + G + A++ +A L+++ V + TFY F+
Sbjct: 39 RILARLKD--QPGPLLPVLHAVQHELGCIPAPAVQTIAEALNLSRAEVHGVITFYPHFRS 96
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P R ++VC C G E L R + + +G + E V C G C +
Sbjct: 97 EP-AARHTLEVCRAEACQAMGGEHLAAHARTALGCDFHANSRNGDFTLEPVYCLGLCAQS 155
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
P VMI Y +TPE+L+ ++ +
Sbjct: 156 PAVMIDGRPYARVTPEKLDRLLARTLEDR 184
>gi|17228246|ref|NP_484794.1| bidirectional hydrogenase complex protein HoxE [Nostoc sp. PCC
7120]
gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [Nostoc sp. PCC 7120]
Length = 164
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 3/148 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ ++ I R+ Q A+I +L +AQE G++ + +A+ L + RV +A
Sbjct: 14 DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P G VC T C ++G ++ +DG LS
Sbjct: 72 TFYHLFSLAPQG-VHSCVVCTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTAR 130
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
C GAC AP V+ + TPE + E
Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVNE 158
>gi|154247409|ref|YP_001418367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
autotrophicus Py2]
gi|154161494|gb|ABS68710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
autotrophicus Py2]
Length = 176
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+VIS + A +P+L QE G+V A+ ++A L+++ V + TFY
Sbjct: 22 ERAAQVISE--NRHLEGATMPILHALQETFGFVPDPAVPMIAESLNLSRAEVYGVLTFYH 79
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ G R V++C C G + L + K+ + DG ++ E + C G
Sbjct: 80 DFRREAPG-RHVVKLCAAEACQSVGGKALAQYVEEKLGVDMGSTSPDGRVTLEPIYCLGL 138
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C AP ++ L + ++EI D F+ G+
Sbjct: 139 CACAPSALVDGQLVGRLDRDAIDEIADCFANGK 171
>gi|226327880|ref|ZP_03803398.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
gi|225203584|gb|EEG85938.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
Length = 181
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
++ ++A I L Q+ GWV AI +A++L + V +ATFY+Q PVG
Sbjct: 41 KHHYEDPRAASIEALKIVQKNRGWVEDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG 100
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R ++ C + C + G + + ++ P DG + C G C P +M
Sbjct: 101 -RHIIRFCDSVVCHITGYQGIQAAIEKHLNIIPGQTTPDGRFTLLPTCCLGNCDKGPTMM 159
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
+ DT+ + PE +E +++ +
Sbjct: 160 VDDDTHSFVKPEEIETLLEQY 180
>gi|295112091|emb|CBL28841.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Synergistetes
bacterium SGP1]
Length = 163
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+++ + +++ R+ Q+ +IP++ Q ++ R A+E++A+ L ++ +V
Sbjct: 1 MRYTDVDVSRIRDILLRHTAD--QTNLIPIMQGVQALYNYLPRPALEMIADYLHVSISKV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134
+ATFY F L+ G + ++ C T C +R ++ R ++ D +
Sbjct: 59 YGVATFYENFSLNAKG-KHIIRCCDGTACHVRKGATILGAIRKELGLTAAQSTTDDMLFT 117
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
E V C GAC P+V++ + + +T ++ E++++ +
Sbjct: 118 VEIVSCLGACGLGPVVVVDDEVHPTMTVDKARELLESIRGKE 159
>gi|325960238|ref|YP_004291704.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
sp. AL-21]
gi|325331670|gb|ADZ10732.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
sp. AL-21]
Length = 158
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+NE++S Y +S +IPLL Q G++S +I+ V+ ++ + +ATFYT
Sbjct: 3 KTLNEILSTY--EGTKSELIPLLQDVQANLGYLSEESIKDVSKFTGVSESEIYGVATFYT 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF+ +PVG + + VC T C ++G ++IE + K D S E V C G
Sbjct: 61 QFRFTPVGKKH-IMVCKGTACHVKGAPQIIEGIERHLGIKEGEVTFDMEYSLESVGCLGC 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP MI D ++T + +++I
Sbjct: 120 CALAPCAMINDDVESNMTLKDVKKIFRRI 148
>gi|313499697|gb|ADR61063.1| Formate dehydrogenase subunit gamma [Pseudomonas putida BIRD-1]
Length = 160
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F
Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEMGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +++C C RG E L R ++ ++DG++S V C GAC
Sbjct: 69 RTAP-PARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + LTPERL ++++
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRED 157
>gi|268591138|ref|ZP_06125359.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
gi|291313364|gb|EFE53817.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
Length = 183
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
++ ++A I L Q+ GWV AI +A++L + V +ATFY+Q PVG
Sbjct: 43 KHHYEDARAASIEALKIVQKNRGWVEDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVG 102
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R ++ C + C + G + L +++ +P +DG + C G C P +M
Sbjct: 103 -RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTTADGRFTLLPTCCLGNCDKGPTMM 161
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I DT+ + PE ++++++ +
Sbjct: 162 IDDDTHSYVQPENIQKLLEQY 182
>gi|254441245|ref|ZP_05054738.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Octadecabacter antarcticus 307]
gi|198251323|gb|EDY75638.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Octadecabacter antarcticus 307]
Length = 182
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + ++++R+ S + ++P+L Q + G++ ++++A+ ++ V +
Sbjct: 30 DAATTEIMQDILARH--SVQEGPLLPILHSVQAEFGFIPSDVVQIIADHQNITRAEVHGV 87
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F + +++C C G L + K+ ++G ++ E V
Sbjct: 88 ISFYHDF-RDAPAGKHTIKICRAEACQAVGSNALSKRVLEKLGVDWGGTTANGAVTIEAV 146
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C P M+ + +L++++
Sbjct: 147 YCLGLCACGPAAMVDNKVVGRVDAAKLDKLLAE 179
>gi|330501360|ref|YP_004378229.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
mendocina NK-01]
gi|328915646|gb|AEB56477.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
mendocina NK-01]
Length = 164
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 18 FSEESAIW-VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F+ E EV++ + A++P+L Q++ G V + ++A L ++ V
Sbjct: 8 FAPEQCAAVAREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVH 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY F+ +P G + +++C C G + L +K+ DG+LS+E
Sbjct: 66 GVVSFYHDFRATPPGRQ-VLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFE 124
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
V C G C AP VM+ + + + E + ++
Sbjct: 125 PVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159
>gi|15966764|ref|NP_387117.1| formate dehydrogenase subunit gamma [Sinorhizobium meliloti 1021]
gi|307301592|ref|ZP_07581351.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
meliloti BL225C]
gi|307316384|ref|ZP_07595828.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
meliloti AK83]
gi|15076036|emb|CAC47590.1| Putative NAD-dependent formate dehydrogenase gamma subunit
[Sinorhizobium meliloti 1021]
gi|306898224|gb|EFN28966.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
meliloti AK83]
gi|306903290|gb|EFN33879.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
meliloti BL225C]
Length = 159
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ +IP+L Q++ G+V ++ V+A L+++ V + TFY F R +++
Sbjct: 25 EGPLIPILHEIQDEFGYVPEESLPVIARELNLSRAEVYGVVTFYHDF-REHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L E + + DG ++ E V C G C +P M+ + +
Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143
Query: 159 DLTPERLEEIIDAFS 173
L LE ++
Sbjct: 144 RLDETVLEALVAEAR 158
>gi|26988907|ref|NP_744332.1| formate dehydrogenase subunit gamma [Pseudomonas putida KT2440]
gi|24983718|gb|AAN67796.1|AE016411_1 formate dehydrogenase, gamma subunit, putative [Pseudomonas putida
KT2440]
Length = 160
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F
Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R +++C C RG E L R ++ ++DG++S V C GAC
Sbjct: 69 RT-APPARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + LTPERL ++++
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRED 157
>gi|108744328|gb|ABG02413.1| FdsG [Xanthobacter flavus]
Length = 164
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+S E A V + + A +P+ QE G+V A+ ++A+ L+++ V
Sbjct: 6 DWSTERAAQVITQLKHL-----EGATMPIFHALQETFGFVPDPAVPMIADSLNLSRAEVY 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY F+ P G R V++C C G + L + K+ + ++DG ++ E
Sbjct: 61 GVLTFYHDFRREPPG-RHVVKLCAAEACQSVGGKALAAYAQEKLDVEMGETSADGRVTLE 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ C G C AP ++ L + ++EI D ++G+
Sbjct: 120 PIYCLGLCACAPAALVDGQLMGRLDRDAIDEIADCIASGK 159
>gi|148548761|ref|YP_001268863.1| formate dehydrogenase subunit gamma [Pseudomonas putida F1]
gi|148512819|gb|ABQ79679.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas putida
F1]
Length = 160
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F
Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R +++C C RG E L R ++ ++DG +S V C GAC
Sbjct: 69 RT-APPARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + LTPERL ++++
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRED 157
>gi|293607183|ref|ZP_06689525.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
piechaudii ATCC 43553]
gi|292814517|gb|EFF73656.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
piechaudii ATCC 43553]
Length = 185
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++P+L Q + G + A++ +A L+++ V + TFY F+ P R V+V
Sbjct: 48 PGPLLPVLHEVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRSEP-AARHTVEV 106
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L R ++ +DG + E V C G C +P VMI +
Sbjct: 107 CRAESCQAMGADQLAAHARAQLGCDFHASTADGNFTLEPVYCLGLCAQSPAVMIDGQPHA 166
Query: 159 DLTPERLEEIIDA 171
+TP +L+ ++
Sbjct: 167 RVTPAKLDRLLAH 179
>gi|260892246|ref|YP_003238343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
KC4]
gi|260864387|gb|ACX51493.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
KC4]
Length = 158
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E++++Y + + +L Q + G++ A+EVVA + ++ + +A+FY +F
Sbjct: 9 REIVAKY--KGREGVLTHILQDIQGRFGYLPPEAMEVVAEEMGVSLAELYGMASFYARFY 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+P G ++VC T C +RG E+++ ++ K + D + E V C G C
Sbjct: 67 FTPRGKT-VIKVCRGTACHVRGSERVLAKFSEELGLKEGETSPDLKFTLEAVNCVGCCAL 125
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
AP+VMI + + T +++ G+
Sbjct: 126 APVVMINEKVF---TANDPGKLLATLRQGEN 153
>gi|188585337|ref|YP_001916882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350024|gb|ACB84294.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 186
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E+I ++ +IPLL QE+EG++SR +E +A ++++ +++ + +FY
Sbjct: 26 KEELRELIRKHRKD--SGGLIPLLQTVQEREGYLSRKRLESIAREMNLSLAKIMGVVSFY 83
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+QF + P G + ++VC T C ++G +++E + ++ + D S E V C G
Sbjct: 84 SQFHIQPKG-KNIIRVCMGTACHVKGAGQVMEKFQRELSIETGQTTEDREFSLEAVSCIG 142
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP++ I +T+ +T + +I+ +
Sbjct: 143 ACGLAPVLTINHNTHGKVTTSDVNHLINRY 172
>gi|222150020|ref|YP_002550977.1| formate dehydrogenase subunit gamma [Agrobacterium vitis S4]
gi|221737002|gb|ACM37965.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
Length = 159
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 20 EESAIWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
E V +I ++ ++P+L Q G V +A V+A L+++ V
Sbjct: 8 EADMARVEAIIDGLKHLEGP----LLPILHEIQRTFGCVPDSAKPVIARALNLSRAEVHG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY F R +++C C G E L E + ++ +DG ++ E
Sbjct: 64 VVSFYHDF-RDHPSGRHVLKLCRAEACQSLGGEPLGETIKARLGIDWHETTADGAVTLEP 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
V C G C AP M+ + + L L++++
Sbjct: 123 VFCLGLCACAPAAMLDGELHGRLDEHCLDDLL 154
>gi|225850512|ref|YP_002730746.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
e) (ndh-1 subunit e) [Persephonella marina EX-H1]
gi|225645271|gb|ACO03457.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
e) (ndh-1 subunit e) [Persephonella marina EX-H1]
Length = 162
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + ++ ++++P + A+IP L ++ + A+ +A+ L + +
Sbjct: 7 LTPDILERIDRHLNKFPFPQQ--AIIPSLHDILDKYRDIPDQAVFELADYLKVPPSDIEG 64
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I +FY F R H+++C PC L + L+E +N + DG E
Sbjct: 65 IVSFYDMF-RHKKNARNHIRICRNLPCHLGKYQLLLEKIKNLTGADIGKNSPDGKWYIEL 123
Query: 138 VECQGACVNAPMVMIGKDTYED---LTPERLEEIIDAF 172
VEC G+C AP +I D Y+ ++ E L++I+ +
Sbjct: 124 VECIGSCAIAPAFLINDDLYDGSKIVSEEDLKKILSRY 161
>gi|90416714|ref|ZP_01224644.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma
proteobacterium HTCC2207]
gi|90331467|gb|EAS46703.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma
proteobacterium HTCC2207]
Length = 162
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S+ ++ ++ +Y ++ A++PLL Q G+V +A+ ++A L+++ V +
Sbjct: 4 SQNEQQSISALVGQY--TQLPGALLPLLHAIQSDLGYVPDSAVPIIAKGLNLSRAEVHGV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F+ +PVG R VQVC C G +L + + +DG ++ E V
Sbjct: 62 ISFYHDFKTTPVG-RHTVQVCRAEACQSMGSRQLEAHAKQALGIDYGETTADGAVTLEPV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C G C +P V I Y + + ++++ T +G
Sbjct: 121 YCLGNCACSPSVRIDDAIYARVDTDLFDDLMSGLLTEEG 159
>gi|209551212|ref|YP_002283129.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536968|gb|ACI56903.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 159
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 24 IWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+I+ R+ +++P+L Q++ G++ + A+ V+A L+++ V + TF
Sbjct: 12 ARTRAIIADLRFLEG----SLLPILHEVQDEFGYIPQEAVPVIAEELNLSRAEVHGVVTF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y + R +++C C G + L E + + DG+++ E V C
Sbjct: 68 YHDY-RDHPAGRHVLKLCRAEACQSMGGDALAERVKTLLGIDFHQTTLDGSVTLEPVYCL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
G C AP M+ + Y + + E++
Sbjct: 127 GLCACAPSAMLDGEVYGRVDDQLAAELVAEAR 158
>gi|227823605|ref|YP_002827578.1| formate dehydrogenase subunit gamma [Sinorhizobium fredii NGR234]
gi|227342607|gb|ACP26825.1| NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium
fredii NGR234]
Length = 159
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L Q++ G+V A + V+A L+++ V + TFY F R +++
Sbjct: 25 EGPLLPILHEIQDEFGYVPEACLPVIARELNLSRAEVYGVVTFYHDF-REHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L E + + DG ++ E V C G C +P M+ + +
Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143
Query: 159 DLTPERLEEIIDAFS 173
L LE ++
Sbjct: 144 RLDDAELEALVAEAR 158
>gi|310778493|ref|YP_003966826.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
gi|309747816|gb|ADO82478.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
Length = 159
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+I +L +AQ+ G++ E + + + + + TFY+ F +P G +
Sbjct: 25 KDGELISVLHKAQDMFGYLPVEVQEFIGEKMGIPISEIYGVITFYSFFTTTPKGE-HPIS 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C + G E ++ ++ K +DG S + + C GAC AP++ IG TY
Sbjct: 84 VCMGTACYVNGSETILNELTRELGVKVGETTNDGKFSIDVLRCIGACGMAPIIKIGNKTY 143
Query: 158 EDLTPERLEEIIDAF 172
+ E+++ I+ +
Sbjct: 144 GRVEAEQVKHILKEY 158
>gi|320102224|ref|YP_004177815.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
gi|319749506|gb|ADV61266.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
Length = 183
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
S E + ++ YP Q+ +P L E V R A+ +A +LD+ +V +
Sbjct: 22 LSAELRDRITALLPNYPS--KQAVTLPALHLVHETFRCVPRQAMVEIAELLDLTPAQVHD 79
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+FY F V +C + C RG ++L+ K+ P SDG L+ E
Sbjct: 80 TMSFYGFFH-QAPIGDVRVWICRSISCAARGGDELLTKTCAKLGIHPGETTSDGKLTVEY 138
Query: 138 VECQGACVNAPMVMIGK-DTYEDL-TPERLEEIIDAFSTGQGDT 179
EC G C +AP + + L LE ++DA G
Sbjct: 139 AECLGICDHAPAALADDGRIFGPLEDESSLEAMLDAVRQGPAPV 182
>gi|306821644|ref|ZP_07455242.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550389|gb|EFM38382.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 179
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
SF F E E + + AV+P+L AQ G++ + +E++++ L
Sbjct: 16 SFEFDMEKNKENIEEFEAFIEENKTVRGAVMPILQEAQRIFGYIPKEIVEIMSHRLGKHS 75
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ +ATFY+QF P G + + VC T C + G +++E ++ K D
Sbjct: 76 SEIYGVATFYSQFTFIPKG-KYAISVCLGTACYVNGANEILEEFEKQLKIKKGETTKDLL 134
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
S E C G C AP+V + Y + +++++ + +
Sbjct: 135 FSIVETRCVGECAQAPVVTVNDKVYPKFSVSDVDDLLTEYREME 178
>gi|300087355|ref|YP_003757877.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527088|gb|ADJ25556.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 166
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
R +SA+IPLL Q++ G++ A+ A L ++ V +A+FYTQF+ P R +
Sbjct: 21 RDRSALIPLLQALQQEFGYLPPEALSAAAERLKLSESAVYGVASFYTQFRFQP-SGRHII 79
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
+VC T C + G EK+++ R + +P ++DG S E V C GAC AP+V++ ++
Sbjct: 80 KVCRGTACHVGGGEKILDELRRGLDVEPGGTSADGEYSLETVACVGACALAPVVLVNEEI 139
Query: 157 YEDLTPERLEEIIDAFS 173
II
Sbjct: 140 IGR---SSAGSIIAGVK 153
>gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum]
Length = 137
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R +E F F+ E+ + S YP +AVIPLL AQ Q GW+ A+
Sbjct: 40 VHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLDLAQRQHGWLPLTAMH 99
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
VA+ L M +RV E+ATFYT F PVG R HVQVC T
Sbjct: 100 YVADYLGMPRMRVYEVATFYTMFMRQPVG-RYHVQVCTT 137
>gi|187250941|ref|YP_001875423.1| putative FeFe hydrogenase subunit HydC [Elusimicrobium minutum
Pei191]
gi|186971101|gb|ACC98086.1| Putative FeFe hydrogenase subunit HydC (NuoE) [Elusimicrobium
minutum Pei191]
Length = 163
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
Q ++I +L Q+ G+V R ++ ++++ ++ E+ +FY F+L+P + +
Sbjct: 24 KQGSLIMILHEIQDTLGYVPREISLELSQLINVPLAQIYEVLSFYHFFKLTP-PAKYRIS 82
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C L+G ++I+ + K + D S V C G C AP+V + +
Sbjct: 83 VCTGTACYLKGAPEIIKEFTRLLGIKEGEQTKDSNFSLTGVRCVGCCGLAPVVSVNGKIF 142
Query: 158 EDLTPERLEEIIDAFS 173
+ ++ I+ +
Sbjct: 143 GAVKATEVKNIVQEYK 158
>gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 257
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ V V++R+ + ++ +L QE+ W+S + VA + +V +A
Sbjct: 9 SDTGAVVAAVLARHGSDGTR--LMQILREIQEETEWLSPDILTRVAEGAKLPRGQVEGVA 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FY F P+G+ V + G L+ K+ KP + DG +S +
Sbjct: 67 GFYHFFHTEPLGS-YRVLWSDNITDRMAGNADLMARMCKKLWLKPGKVSEDGLVSVDTTS 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C P +++ +T ER+++I+D
Sbjct: 126 CTGLCDQGPALLVNYRPVTRMTAERVDQIVDLIR 159
>gi|51244536|ref|YP_064420.1| NADH dehydrogenase subunit E [Desulfotalea psychrophila LSv54]
gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxidoreductase, 24 kDa subunit
[Desulfotalea psychrophila LSv54]
Length = 154
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
+IP+L Q + G++ A+ VA+ L + RV +ATFY QF+ +PVG V VC
Sbjct: 19 LIPILQNVQHKFGYLPEDAMREVADFLRIPESRVYGVATFYEQFRFTPVGKT-KVTVCRG 77
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
T C +RG +K+I ++ K DG + E C G C AP VMI ++ +LT
Sbjct: 78 TACHVRGAQKIIASVEKRLGIKEGETTEDGEYTLETAACIGCCALAPCVMINEEVEANLT 137
Query: 162 PERLEEIIDA 171
P+++ D
Sbjct: 138 PKKMNAYFDQ 147
>gi|75910849|ref|YP_325145.1| bidirectional hydrogenase complex protein HoxE [Anabaena variabilis
ATCC 29413]
gi|75704574|gb|ABA24250.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
subunit HoxE [Anabaena variabilis ATCC 29413]
Length = 164
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ ++ I R+ Q A+I +L +AQE G++ + +A+ L + RV +A
Sbjct: 14 DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P G VC T C ++G + ++ +DG LS
Sbjct: 72 TFYHLFSLAPQG-VHSCVVCTGTACYVKGAQAILTDLEKSTRIHAGETTADGQLSLLTAR 130
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
C GAC AP V+ + TPE + E
Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVSE 158
>gi|169830326|ref|YP_001716308.1| hypothetical protein Daud_0108 [Candidatus Desulforudis audaxviator
MP104C]
gi|169637170|gb|ACA58676.1| Protein of unknown function DUF166 [Candidatus Desulforudis
audaxviator MP104C]
Length = 377
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+S ++P+L AQE G++ A+ +A L + V +ATFY QF G R ++
Sbjct: 244 HRSELVPILQDAQEVFGYLPETAMLEIARFLRLPESHVYGVATFYDQFHFIRRG-RNQIK 302
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G ++++E ++ D S E V C GAC AP+V++GK+ Y
Sbjct: 303 VCCGTACHVKGADRVLEEFERQLGVGHGETTPDYEYSLERVACVGACALAPVVVMGKEVY 362
Query: 158 EDLTPERLEEII 169
+TP R ++
Sbjct: 363 GQMTPGRARSVL 374
>gi|33519941|ref|NP_878773.1| NADH dehydrogenase subunit E [Candidatus Blochmannia floridanus]
gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [Candidatus Blochmannia floridanus]
Length = 154
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F++E + + Y R +A I L Q+++GWVS AI++V+ +L ++ V
Sbjct: 1 MKFNKEELDIIRLECTHYENDR--AASIEALKIIQKRQGWVSDDAIKLVSQVLHISESDV 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
IATFY Q PVG + V+ C + C + GCE++ + + + K + D +
Sbjct: 59 EGIATFYNQIFRQPVG-KYIVRYCDSNVCYINGCEQIQQTLESSLGIKIGNTTQDNKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C +P++MI K Y + P + +I+ ++
Sbjct: 118 LPTCCMGLCDKSPVLMIDKKIYSCIVPSDIMQILRSY 154
>gi|46446197|ref|YP_007562.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
Protochlamydia amoebophila UWE25]
Length = 159
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP +SA+IP L AQ ++G++ +A + D+ V I TFY F PVG
Sbjct: 5 YPN--KRSALIPALHLAQAEKGYLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVG- 61
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + VC CMLRG + + K+H P DG + EC AC AP++++
Sbjct: 62 KHVIHVCKNISCMLRGADGFLARLCQKMHISPGETTQDGEFTVIASECLAACDKAPVMIV 121
Query: 153 GKDTYEDLTPERLEEIIDAFST 174
+ ++++ I
Sbjct: 122 DDKVIGPVEITQIDDYIQKAKQ 143
>gi|298506754|gb|ADI85477.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
[Geobacter sulfurreducens KN400]
Length = 191
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 6/192 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ + + P + V + +Y A++ +L AQE G +S
Sbjct: 1 MNSTDNSPGKGTPDGLAADP-RFKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA L + RV +ATFY F L G VC T C ++ +++ N+
Sbjct: 58 MNHVARQLRVPPSRVYGVATFYHFFTLEARGE-HSCVVCTGTACYVKRSAEIVTRLENEF 116
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD-- 178
K +DG L+ V C G+C AP+V++ +T TP+ + +
Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176
Query: 179 TIRPGPQIDRIS 190
P R
Sbjct: 177 AETVRPVRRRKG 188
>gi|222087422|ref|YP_002545959.1| formate dehydrogenase [Agrobacterium radiobacter K84]
gi|221724870|gb|ACM28026.1| formate dehydrogenase [Agrobacterium radiobacter K84]
Length = 159
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L QE+ G+V + + ++A L+++ V + TFY + R +++
Sbjct: 25 EGPLLPILHGIQEEFGYVPQDTLPLIAKALNLSRAEVHGVMTFYHDY-RDHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L E + + DG+++ E V C G C AP M+ + Y
Sbjct: 84 CRAEACQSMGGDQLAERVKRLLGIDFHQTTLDGSVTLEPVYCLGLCACAPAAMLDGELYG 143
Query: 159 DLTPERLEEIIDAFS 173
L E E+++
Sbjct: 144 RLDDEGAEDLVKEAR 158
>gi|254282625|ref|ZP_04957593.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
NOR51-B]
gi|219678828|gb|EED35177.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
NOR51-B]
Length = 154
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
+I +Y C+ A++PLL Q Q G + AAI+ +A L+++ V + +FY F+ S
Sbjct: 8 IIDQYRD--CEGALLPLLHAVQAQWGHIPDAAIDPIARELNLSAAEVHGVISFYHDFKTS 65
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P G VQVC C RG L ++ G ++ E V C G C P
Sbjct: 66 PQGE-HLVQVCCAEACQARGSRSLESYATQRLGIDYGETTVSGRVTLERVYCLGNCACGP 124
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ I D Y + + ++ +
Sbjct: 125 SLRIDDDVYARVDNPTFDALLAE-KAEEP 152
>gi|195952595|ref|YP_002120885.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195932207|gb|ACG56907.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 154
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++E + I + + A++ L QE G + A+E ++ ILD+ +
Sbjct: 2 LTQEIKEAIEGHIKYF--GSKEEAMLLSLHSIQEHLGHIPEEALEELSEILDIPLHHIKG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ FY F + + VC + C L K+ + + +P DG E
Sbjct: 60 VVAFYEMFDTGEK-AKHRIYVCNSIVCYLLKSHKVFNAVKELLGIEPGQVTRDGMFKLVE 118
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
V+C GAC AP+ M+ DTY + E+L EI+ +
Sbjct: 119 VQCLGACSEAPVFMVDNDTYRYESKEKLHEILAKY 153
>gi|253998888|ref|YP_003050951.1| formate dehydrogenase subunit gamma [Methylovorus sp. SIP3-4]
gi|253985567|gb|ACT50424.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
SIP3-4]
Length = 156
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E A ++ I+ + PLL Q+ G+V + ++ L+++ + +
Sbjct: 3 PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ P G R +Q+C C G +L + + SDG+++ E V
Sbjct: 61 TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C +P + + ++ Y ++P+RL+ II
Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAEAK 153
>gi|319795812|ref|YP_004157452.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Variovorax
paradoxus EPS]
gi|315598275|gb|ADU39341.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
paradoxus EPS]
Length = 166
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ V +V+ + A++P+L Q+ G++ + +A ++++ V +
Sbjct: 13 SDELAAVRQVLQE--RAEEPGALLPILHDVQDALGYIPPHTVTTIAEGVNLSRAEVHGVI 70
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T+Y F S R +Q+C C G + L+ ++ + DG + E
Sbjct: 71 TYYHHF-RSAPAARHVIQICRAEACQSMGADALLAHAELRLGCSAHGHSKDGNFTLEPAF 129
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G C ++P + I ++ + +T + ++ +
Sbjct: 130 CLGLCASSPAMTINEEPHARMTTRSFDALVAQY 162
>gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Cupriavidus metallidurans CH34]
gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit
[Cupriavidus metallidurans CH34]
Length = 602
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 3/161 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ ++ RY R + ++ +L Q G + + +A L+++ + + E A+FY
Sbjct: 3 KDIRTILERYRSDRAR--LMDILWDVQHLYGHIPDEVLPQLAAELNLSPLDIRETASFYH 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P + + +C + + G + + + + + + +G E C G
Sbjct: 61 LFHDKP-SGKHRIYLCNSVIAKMNGYQAVHDALERETGVRFGETDPNGMFGLFETPCIGL 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
P ++I K + L P ++ +II G+ P
Sbjct: 120 SDQEPAMLIDKVVFTRLRPGKIADIIAQLKQGRSPAEIANP 160
>gi|313200987|ref|YP_004039645.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Methylovorus sp.
MP688]
gi|312440303|gb|ADQ84409.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
MP688]
Length = 156
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E A ++ I+ + PLL Q+ G+V + ++ L+++ + +
Sbjct: 3 PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ P G R +Q+C C G +L + + SDG+++ E V
Sbjct: 61 TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C +P + + ++ Y ++P+RL+ II
Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAEAK 153
>gi|39997816|ref|NP_953767.1| bidirectional hydrogenase complex protein HoxE [Geobacter
sulfurreducens PCA]
gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, putative [Geobacter sulfurreducens PCA]
Length = 191
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 6/192 (3%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+ + + P + V + +Y A++ +L AQE G +S
Sbjct: 1 MNSTDNSPGKGTPDGLAADP-RFKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ VA L + RV +ATFY F L G VC T C ++ +++ N+
Sbjct: 58 MTHVARQLRVPPSRVYGVATFYHFFTLEARGE-HSCVVCTGTACYVKRSAEIVTRLENEF 116
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD-- 178
K +DG L+ V C G+C AP+V++ +T TP+ + +
Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176
Query: 179 TIRPGPQIDRIS 190
P R
Sbjct: 177 AETVRPVRRRKG 188
>gi|300087733|ref|YP_003758255.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527466|gb|ADJ25934.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 156
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
MSV + + V+EV+ ++ + S ++ +L Q Q ++ R +
Sbjct: 1 MSVNKDSIYNI--------------VDEVVVKH--NGDPSMLVAMLQDVQAQLYFLPRES 44
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
I +A LD+ RV +ATF+ F L P G + +++VC T C +RG EK+++ ++
Sbjct: 45 IVRIAEKLDIPLTRVYSVATFFRAFSLKPRG-KHNLKVCMGTACHVRGAEKVLDKIETEL 103
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
D + E C GAC P+V++ + +T ++++ I++
Sbjct: 104 CVCAGETTKDMKYTIETANCVGACALGPVVVVDNEFVGQMTTDKVKTILEKC 155
>gi|94265733|ref|ZP_01289470.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
proteobacterium MLMS-1]
gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
proteobacterium MLMS-1]
Length = 200
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+I L Q+ G++ A+ +A L + +V + TFY F L P G R
Sbjct: 30 NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 88
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +++ H K +DG LS C GAC AP V++
Sbjct: 89 SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 148
Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
E I+ G G Q SAP
Sbjct: 149 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAP 184
>gi|94272887|ref|ZP_01292198.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
proteobacterium MLMS-1]
gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
proteobacterium MLMS-1]
Length = 171
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+I L Q+ G++ A+ +A L + +V + TFY F L P G R
Sbjct: 1 NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 59
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +++ H K +DG LS C GAC AP V++
Sbjct: 60 SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 119
Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
E I+ G G Q SAP
Sbjct: 120 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAP 155
>gi|309791452|ref|ZP_07685957.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
trichoides DG6]
gi|308226488|gb|EFO80211.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
trichoides DG6]
Length = 174
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ + R A+I +L +AQE G++S + +A L + RV +ATFY
Sbjct: 19 LKILEATMKR--NQYRPDALIEVLHKAQEIYGFLSPDLLVRIARSLHLPPSRVYGVATFY 76
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F L+P GT +C T C +RG +L+ + H DG LS V C G
Sbjct: 77 HFFSLAPQGT-HTCTICLGTACYVRGAAELMARAEHAAGIAAGHTTPDGHLSLASVRCIG 135
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
AC AP V+I + +TP+ + + A
Sbjct: 136 ACGIAPAVVIDGNVTGHMTPDDIAAQVTAL 165
>gi|297587237|ref|ZP_06945882.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
gi|297575218|gb|EFH93937.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
Length = 161
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 15 SFSFS-EESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
SF+F +E A V E + S+ + ++P+L RAQ++ G++ + I +++ ILD+
Sbjct: 2 SFTFDLKEHASQVEE-FREFVRSKKDIKGPLMPVLQRAQDEFGYLPKEIITMISKILDIP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ + TFY QF L P G + +QVC T C ++G +++ E + + D
Sbjct: 61 LSEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQ 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
S C G C AP+++I D Y + LE II +
Sbjct: 120 KFSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIISKY 160
>gi|320160661|ref|YP_004173885.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
gi|319994514|dbj|BAJ63285.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
Length = 168
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + R+ +A+I L QE G+VSR A+ VA L++ +V +ATFY
Sbjct: 18 KIVEATMRRH--GYASTALIETLHSIQETFGFVSREALNYVAESLNIPPAKVFGVATFYN 75
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L+PVG +C T C ++G ++++ + + +P DG L++ C GA
Sbjct: 76 LFNLNPVGE-HVFSLCTGTACYVKGAGEIVDFMKEEFGLEPGQTTPDGKLTFMVARCVGA 134
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C AP++++ + L E ++ I
Sbjct: 135 CGLAPVMILDGEVVGKLGVEEMKAKIRE 162
>gi|304313909|ref|YP_003849056.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
gi|302587368|gb|ADL57743.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
Marburg]
Length = 149
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + S Y + S +IP+L Q+ G++ A+E VA ++ V +ATFY
Sbjct: 3 KKLKGIFSGY--TGHASEIIPILQDIQDVYGYLPEHALEEVAGFTGVSKTHVYGVATFYA 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
QF+ P G + + VC T C + G E++++ + D S E V C G
Sbjct: 61 QFRFKPKGRKH-IMVCTGTACHVSGAEQVLDALERHLGIGEGDVTEDMEYSLESVGCIGC 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168
C AP M+ + + P R+ +I
Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVSKI 144
>gi|301060220|ref|ZP_07201087.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
gi|300445732|gb|EFK09630.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
Length = 195
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ + + R +IP+L QE+ ++S A+++VA+ L++A V +A
Sbjct: 28 AAMLEDIEGRLREFEKERK--NLIPMLQMIQERHAYLSADALQMVADKLELALCEVYGVA 85
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY QF+ P G + H++VC T C +RG + ++E K+ D S E V
Sbjct: 86 TFYNQFRFHPPG-KHHMKVCLGTACHVRGGDIILENFERKLGIGHGETTPDREFSIERVA 144
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
C G C AP+V++ + + + P ++E +I
Sbjct: 145 CVGCCALAPVVIVDETAHGHVAPSKVEGLI 174
>gi|78223288|ref|YP_385035.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
metallireducens GS-15]
gi|78194543|gb|ABB32310.1| tungsten-dependent benzoyl-CoA reductase-related protein bamG
[Geobacter metallireducens GS-15]
Length = 150
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++++I ++ S++I +L+ Q + W+ + A++ V L + R+ IATF
Sbjct: 2 DISRIDQIIDKH--DGEASSLIQILLDIQSEHNWLPKEALKRVCERLQVPMSRITHIATF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F L P G R V VC T C +RG +++++ + K +SD S E V C
Sbjct: 60 YKAFSLVPKG-RHQVHVCMGTACHVRGAQRVLDTVQEVTGVKSGETDSDLKFSVETVNCL 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++ + + ++ P ++ +++
Sbjct: 119 GCCALGPVMEVDGKHHGNIAPSQIASVLNNC 149
>gi|269926645|ref|YP_003323268.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790305|gb|ACZ42446.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
terrenum ATCC BAA-798]
Length = 174
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+++ SEE VN ++ + ++IP L + Q ++ A +++ +
Sbjct: 6 DTWTGSEEDRARVNSILDEFEGQDPMESLIPALHKIQAAYRYIPEEAGHIISERWHIPET 65
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ + +FY+ F P G R + +C C G +L EV ++ + DG
Sbjct: 66 DIFNVVSFYSDFSTEPRGKR-VLWICEGAACYFMGGPQLGEVAQSVLGIPYNETTPDGEW 124
Query: 134 SWEEVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ + C G C AP+V + Y L+PE L +I
Sbjct: 125 TLRRADFCFGVCHRAPLVELDHHIYGPLSPEELRALIAN 163
>gi|322417696|ref|YP_004196919.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
gi|320124083|gb|ADW11643.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
Length = 160
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A++ A +L ++ ++V E+ATFY PVG + + V
Sbjct: 21 REAAVDVMKELQAHYGWLTDEAVQEAAALLGLSPLQVEELATFYEMIYRRPVGRK-VIHV 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C C+ LI ++++ P +DG + C G C ++P + +G Y
Sbjct: 80 CDSISCWCADCDGLIRHLKDRLGVGPGETTADGMFTLIPCCCMGMCGDSPAMSVGGTPYG 139
Query: 159 DLTPERLEEIID 170
LTPE +E+++
Sbjct: 140 RLTPELADEVLE 151
>gi|167032815|ref|YP_001668046.1| formate dehydrogenase subunit gamma [Pseudomonas putida GB-1]
gi|166859303|gb|ABY97710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
GB-1]
Length = 160
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++R A++P+L Q G++ AA+ +A+ L+++ V + +FY F
Sbjct: 11 IQRILAR--DKATPGALLPILHAIQHDIGYIPDAAVPEIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +++C C RG E L R ++ ++DG +S V C GAC
Sbjct: 69 RTAP-PARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + LTPERL +++
Sbjct: 128 CSPALELDGQVHARLTPERLRALVNGCRED 157
>gi|269122187|ref|YP_003310364.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
termitidis ATCC 33386]
gi|268616065|gb|ACZ10433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
termitidis ATCC 33386]
Length = 158
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ A+I +L +AQE G++ + E +A+ L+ RV + +FY+ F + P G A
Sbjct: 22 DTKEEALITVLHKAQEIFGYLPKEVQEFIADKLNEPLARVYGVVSFYSFFTMIPKGDIA- 80
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC T C +RG EK+++ ++++ K + DG S + + C GAC AP+V++
Sbjct: 81 ISVCLGTACFVRGAEKVLDEFQSRLGIKAGETSPDGKFSLDVLRCIGACGIAPVVLVNGK 140
Query: 156 TYEDLTPERLEEIIDAF 172
Y+ + ++ I+ +
Sbjct: 141 VYKKVEAGEVKNIVSEY 157
>gi|254483036|ref|ZP_05096271.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[marine gamma proteobacterium HTCC2148]
gi|214036721|gb|EEB77393.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[marine gamma proteobacterium HTCC2148]
Length = 152
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++PLL QE G+V +I +A +++++ V + +FY + SPVG R +QV
Sbjct: 13 PGGLLPLLHAVQEDLGYVPPESIPAIAEVMNLSAAEVHGVISFYHDLKTSPVG-RHTLQV 71
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G L + ++ DG+++ E+V C G C +P V I +TY
Sbjct: 72 CAAESCQAAGGRALEHAAQEQLGIGFGETTDDGSVTLEKVYCLGNCACSPSVRIDNETYA 131
Query: 159 DLTPERLEEIIDAFSTGQG 177
L L +I G+G
Sbjct: 132 RLDATGLTALIANIGQGEG 150
>gi|124268892|ref|YP_001022896.1| NAD-dependent formate dehydrogenase subunit gamma [Methylibium
petroleiphilum PM1]
gi|124261667|gb|ABM96661.1| NAD-dependent formate dehydrogenase gamma subunit [Methylibium
petroleiphilum PM1]
Length = 161
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
S V V++R + A++P+L Q+Q G + A+ +A L+++ V + T+
Sbjct: 4 SLAAVRAVLAR--RADEPGALLPILHEVQDQLGCIPADAVPEIAGALNLSRAEVHGVITY 61
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ P R +QVC C G E L+ ++ + +SDG + E V C
Sbjct: 62 YHHFRGEP-AGRHVIQVCRAEACQALGAEALLTHAERRLVCRSHASSSDGRYTLEPVFCL 120
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
G C ++P ++I + + ++P + +I A +
Sbjct: 121 GLCASSPAIVIDERLHARISPAAFDRLIGALENEDAEE 158
>gi|219851496|ref|YP_002465928.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
palustris E1-9c]
gi|219545755|gb|ACL16205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
palustris E1-9c]
Length = 162
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 22 SAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++++I+RY P R V+ +L Q QEG++ R +E ++ LD+ + +
Sbjct: 2 EEQVLDQIIARYASPTGR----VLGILSEVQHQEGYIPRDVLETLSQKLDLPLSDLYSLV 57
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------- 131
TFY F L PVG + VC T C ++G L+E ++ +H + + DG
Sbjct: 58 TFYALFSLKPVGE-HVITVCMGTACHVKGAVSLLETLQDLLHLEGEAADEDGKFSLTTED 116
Query: 132 -TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ E C GAC AP++ + + Y +TPE L I++ +
Sbjct: 117 NRFTLEIARCFGACSIAPVLRVDGNLYGYVTPESLPGILEGY 158
>gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Labrenzia alexandrii DFL-11]
gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Labrenzia alexandrii DFL-11]
Length = 626
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V ++ R+ + + ++ +L Q++ ++ A ++ +A + I V +A+FY+
Sbjct: 26 VADICERFGNDKHR--MLDILREVQDRFQCIAPATMDQIAEETGLTRIEVEGVASFYSFL 83
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L P G +++C G E + + + K ++DG +S E C G C
Sbjct: 84 SLQPKGRI-TIRLCDDIVDRYAGLEAVTAAFEDALGIKIGETSADGAVSLEYTPCIGMCD 142
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
AP M+ +LT + E+ +A G+
Sbjct: 143 QAPAAMVNDIVLTNLTAQSAREVAEAIIAGKRPE 176
>gi|326561570|gb|EGE11911.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 46P47B1]
Length = 169
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + ++ I YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V
Sbjct: 17 LTPQEIDGIHHHIHYYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEG 74
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ + PVG R + VC + C L G E L+ + ++ + +DG +
Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLP 133
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ C G C V+I +DTY + P + +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168
>gi|224825581|ref|ZP_03698686.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
nitroferrum 2002]
gi|224602502|gb|EEG08680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
nitroferrum 2002]
Length = 159
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 19 SEESAIWV--NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E+ ++ + A++P+L Q+ G++ A+ +A L + V
Sbjct: 3 TEQDLAHASLQAILQTH--QNQPGALLPILHDVQDTLGFIPDWAVADIAKALSQSRAEVH 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY F+ +P + +Q+C C RG +L + R++D ++ E
Sbjct: 61 GVITFYHHFRTTP-PAQHTLQICQAEACQARGSRELTAHAEQVLGCSLHGRSADQSIGLE 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
V C G C + P + + + +L+ ++ Q
Sbjct: 120 PVYCLGLCSSGPNIQLNDKMVSRVDAAKLDRLLANVKEAQ 159
>gi|71280406|ref|YP_268784.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
gi|71146146|gb|AAZ26619.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
34H]
Length = 168
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ ++IS + A++P+L Q ++ + AI +VA L + + TF
Sbjct: 8 KSIEQIISEIVEKKVGLPGALLPILHDIQHHFDYIPKKAIAIVAQGLQQTEAEIYGVITF 67
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y FQL R +++C C G + L + ++++ D + E V C
Sbjct: 68 YAHFQL-NKPGRHIIEICRGEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLEPVYCL 126
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C +P + + + Y + E+ ++ +
Sbjct: 127 GNCACSPSIKVADNVYGRMNSEKFAKLSEQL 157
>gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxidoreductase 24 kDa subunit,
mitochondrial precursor [Candidatus Kuenenia
stuttgartiensis]
Length = 152
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 30 ISRYPP--SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
+ +Y + A IP+L QE+ G++ ++ V ++ + +ATFY QF+L
Sbjct: 6 VKKYLEICGNTKEASIPILQSIQEEYGYLPLDVLDQVCEESEITKSHLYGVATFYAQFKL 65
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+P G A ++VC T C ++G + I ++++ DG S E V C G C A
Sbjct: 66 TPKGRNA-IKVCKGTACHVKGADITIVAMKDQLGIDIDQTTEDGAFSMETVACLGCCSLA 124
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
P++MI +D + + ++ + +
Sbjct: 125 PVIMINEDVFGGFSSAKVRGTLKKY 149
>gi|104780975|ref|YP_607473.1| formate dehydrogenase subunit gamma [Pseudomonas entomophila L48]
gi|95109962|emb|CAK14667.1| putative formate dehydrogenase, gamma subunit [Pseudomonas
entomophila L48]
Length = 161
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ V++R A++P+L Q G + AA+ +A+ L+++ V + +FY F
Sbjct: 11 IQRVLAR--EKHTPGALLPVLHAIQAGIGHIPDAAVGEIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +++C C RG E L R ++ + DG LS V C GAC
Sbjct: 69 RTTP-PARHTLRLCRAESCQSRGAEALAAQLREQLGLDDHGTSEDGALSLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + +TPERL ++ G
Sbjct: 128 CSPALELDGQLHARVTPERLRALVAGCREG 157
>gi|308271654|emb|CBX28262.1| hypothetical protein N47_G35860 [uncultured Desulfobacterium sp.]
Length = 162
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 26 VNEVISR-YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
++ +I Y + +I +L Q+ ++ AAI +A + + + +ATFY+
Sbjct: 17 LDRIIEEDYNNDKE--NLIMILQGIQKVYNYLPGAAISYLAVKIGIPLSHIYGVATFYST 74
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F L P G R + +C T C +RG E++ E N ++ D + E V C G C
Sbjct: 75 FSLKPRG-RNIISICLGTACHVRGGERIRESLTNTLNITDGQTTEDKRFTLESVRCIGCC 133
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
P++ I +D + +TP+++ I+ +
Sbjct: 134 SLGPVIKINEDMHGRITPDKVNPILSHY 161
>gi|218782890|ref|YP_002434208.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218764274|gb|ACL06740.1| 2Fe-2S family protein similar to NADH:ubiquinone oxidoreductase
(NuoE) [Desulfatibacillum alkenivorans AK-01]
Length = 156
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +++ Y ++ ++ + +V I V+ L ++ + +ATFY
Sbjct: 10 KITKIVQDYNSDPE--CLLMIMQDISDIYNYVPPEVIPVLVEKLGVSESLIYSVATFYKT 67
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
L P G + + VC T C +RG EK+ ++ + +DG + + V C GAC
Sbjct: 68 ISLEPRG-KYIINVCTGTACHVRGAEKITNALAEELGIEEGQTTADGMFTLDAVRCVGAC 126
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ P+ M+ DT+ L E++D +
Sbjct: 127 ASGPVAMVNHDTHGALNRSSALEMLDQYRK 156
>gi|116749389|ref|YP_846076.1| NADH dehydrogenase subunit E [Syntrophobacter fumaroxidans MPOB]
gi|116698453|gb|ABK17641.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 163
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
I ++ Q+ G+++ A+E A IL M + + E+ATFY SPVG R + VC +
Sbjct: 25 IDVMFELQDHYGYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVG-RYVIHVCDSA 83
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
C + G +++I+ ++ + DG + V C G C AP +MI ++ Y LT
Sbjct: 84 VCWMEGYQRIIDYLCQRLKLTVGGTSPDGLFTLLPVCCIGYCDRAPAMMINRNVYGRLTR 143
Query: 163 ERLEEIIDAF 172
E+++ I+D
Sbjct: 144 EKIDRILDRL 153
>gi|320354166|ref|YP_004195505.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
subunit HoxE [Desulfobulbus propionicus DSM 2032]
gi|320122668|gb|ADW18214.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
subunit HoxE [Desulfobulbus propionicus DSM 2032]
Length = 166
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++ I R+ A+I L AQE G++ R + +A L + RV +ATF
Sbjct: 14 QRQAIDRTIHRH--DFRPDALIETLHTAQETLGYLDRDTLAYIAEKLKIPPARVFGVATF 71
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+L P G + VC T C ++G ++++ + H +P D LS EV C
Sbjct: 72 YNHFRLKPKG-NHTLAVCTGTACHVKGNDQILAWLGEQYHLRPGETTPDNHLSLVEVRCV 130
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
GAC AP+++ + + +I
Sbjct: 131 GACALAPVIVSDGELIGKKNFDEAIRLIKE 160
>gi|222053328|ref|YP_002535690.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
gi|221562617|gb|ACM18589.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
Length = 150
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
++++I ++ + +S++I +L+ Q + W+ + A+ VA L + R+ IATF
Sbjct: 2 DIAKIDQIIDKH--NGEESSLIQILLDIQSEHHWLPKEALNRVAEKLQVPMSRIQHIATF 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F L P G R V VC T C +RG +++++ ++ KP +++ S E V C
Sbjct: 60 YKAFSLVPKG-RHEVHVCMGTACHVRGAQRVLDTVQDATGIKPGETDAELKFSLETVNCL 118
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P++ + + ++ P ++ +++
Sbjct: 119 GCCALGPVMEVDGKHHGNIAPSQIASVLNNC 149
>gi|182677975|ref|YP_001832121.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633858|gb|ACB94632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 157
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ +I+++ + A +P+ Q+ G+V A+ ++A L+++ V + TF
Sbjct: 8 NDAVAATIIAQHKA--QEGATLPIFHALQKAFGYVPAEAVPMIAEALNLSRAEVHGVLTF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ P G +++C C G + L ++ K D ++ E V C
Sbjct: 66 YHDFRSEPPGC-HILKLCRAEACQAAGGDHLATGVERQLGIKLGETTPDQQVTLEPVFCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C AP M+ + RL+ +++ +
Sbjct: 125 GLCAVAPSAMLDDQPIGRVDAARLDALLNEVRS 157
>gi|167755801|ref|ZP_02427928.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
gi|167704740|gb|EDS19319.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
Length = 242
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E ++E+++++ + ++ L Q + G++ A+E ++ + + +V
Sbjct: 82 KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVY 139
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+QF P G + + VC T C + G + ++++ + + DG S +
Sbjct: 140 GVVTFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 198
Query: 137 EVECQGACVNAPMVMIGKDTYE 158
C GAC AP+V + +
Sbjct: 199 ATRCVGACGLAPVVSVDGIVFG 220
>gi|298507476|gb|ADI86199.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
Length = 162
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R + V
Sbjct: 21 REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKR-VIHV 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C G E L+ ++ +P +DG + C G C AP +M+G +
Sbjct: 80 CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139
Query: 159 DLTPERLEEII 169
+T ER EI+
Sbjct: 140 RVTLERAGEIL 150
>gi|39998532|ref|NP_954483.1| NADH dehydrogenase subunit E [Geobacter sulfurreducens PCA]
gi|39985479|gb|AAR36833.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
Length = 162
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R + V
Sbjct: 21 REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKR-VIHV 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C G E L+ ++ +P +DG + C G C AP +M+G +
Sbjct: 80 CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139
Query: 159 DLTPERLEEII 169
+T ER EI+
Sbjct: 140 RVTLERAGEIL 150
>gi|218961479|ref|YP_001741254.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit gamma [Candidatus Cloacamonas
acidaminovorans]
gi|167730136|emb|CAO81048.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit gamma [Candidatus Cloacamonas
acidaminovorans]
Length = 160
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
++ +I +L AQE G++ E +A L++ ++ + TFY F ++P G + ++ V
Sbjct: 26 RNPLIEILRSAQEIFGYLPVEVQEFIAQELNIPVNQIYGVVTFYNFFTMTPRG-KYNLNV 84
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C T C ++G +L+++ ++ + DG + V C GAC AP+ +IG++TY
Sbjct: 85 CLGTACFVKGAPRLVQMLSEELGIQMGETTKDGIFTMSAVRCVGACSLAPVFVIGEETYG 144
Query: 159 DLT-PERLEEIIDAFS 173
+ +++ EI+ +
Sbjct: 145 RIDSKDKIAEILKRYK 160
>gi|169824853|ref|YP_001692464.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
gi|302379620|ref|ZP_07268105.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
magna ACS-171-V-Col3]
gi|303234495|ref|ZP_07321132.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
magna BVS033A4]
gi|167831658|dbj|BAG08574.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
gi|302312527|gb|EFK94523.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
magna ACS-171-V-Col3]
gi|302494329|gb|EFL54098.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
magna BVS033A4]
Length = 161
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 15 SFSFS-EESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
SF+F +E A V E + S+ + ++P+L AQ++ G++ + I ++ ILD+
Sbjct: 2 SFTFDLKEHAEQVEE-FREFVRSKKDIKGPLMPVLQHAQDEFGYLPKEIITTISKILDIP 60
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ + TFY QF L P G + +QVC T C ++G +++ E + + D
Sbjct: 61 LSEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQ 119
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
S C G C AP+++I D Y + LE I+ +
Sbjct: 120 KFSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIVSKY 160
>gi|298293799|ref|YP_003695738.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
DSM 506]
gi|296930310|gb|ADH91119.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
DSM 506]
Length = 157
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
S VI + S + ++P+L QE G+V A + ++A +L+++ V + TF
Sbjct: 8 SEERARAVIEEF--SHLEGPLMPMLHAVQETFGYVPEAVVPMLAEMLNISRAEVHGVVTF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ P R +++C C G + L + +++ K +DG ++ E + C
Sbjct: 66 YHDFRHEP-AGRHVLKLCRAEACQAAGGDALADHAEHRLGCKLGETTADGRVTVEPIYCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G C AP M+ L RL+ +I
Sbjct: 125 GLCATAPSAMLDGRIVARLNERRLDALIAE 154
>gi|90579192|ref|ZP_01235002.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
gi|90440025|gb|EAS65206.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
Length = 188
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+++ + E I+ YP ++ I L Q++ G++++ ++ +V+ + D++ ++ E
Sbjct: 2 LTDQERAHLEEHIAHYPE--KRAGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT + PVG R ++VC + C RG +K++E N + +DG+++
Sbjct: 60 LITFYTLLRRRPVG-RNVMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118
Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFSTGQ 176
C G C AP +I D E +LTPER+ I+ + +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158
>gi|159186285|ref|NP_355959.2| formate dehydrogenase subunit gamma [Agrobacterium tumefaciens str.
C58]
gi|159141419|gb|AAK88744.2| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
str. C58]
Length = 159
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L QE+ G++ +A +++A+ L+++ V + TFY F R +++
Sbjct: 25 EGPLLPILHAVQEEFGYIPESAKQIIASALNISRAEVHGVVTFYPDF-RDHPQGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G E L E +N++ + +DG+++ E V C G C AP +M+ + +
Sbjct: 84 CRAEACQSMGGEPLAETIKNRLGLEWHETAADGSVTLEPVFCLGLCAQAPALMLDGEVHA 143
Query: 159 DLTPERLEEIIDAFS 173
L + L I+
Sbjct: 144 RLDDDCLGNILTEAR 158
>gi|116748291|ref|YP_844978.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116697355|gb|ABK16543.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 162
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ +I P +++I +L +AQE G++ + VA L ++ + +
Sbjct: 10 DAALVKGLARIIE--PYRGQPNSLIQVLAKAQEYIGYLPKWVQVQVAEGLGLSLQEIYGV 67
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
TFY F L P G R + VC T C ++G + +++ R+ I KP D + E V
Sbjct: 68 TTFYAFFSLIPRG-RHKLSVCAGTACYVKGTKNVLKGVRDAIGIKPGQTTPDSRFTMEIV 126
Query: 139 ECQGACVNAPMVMIG-KDTYEDLTPERLEEII 169
C GAC AP V++ KD + L E++ EI+
Sbjct: 127 RCIGACGLAPAVIVNGKDVHGRLEAEQIPEIL 158
>gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3')
subunits of formate dehydrogenase and to nuoE and nuoF
of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch
sediment']
Length = 710
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + +I+++P R ++ ++P L AQ EGW+S ++ VA L + V +
Sbjct: 2 TPPEEHTLRTLIAQFP--RERTWLLPALQTAQRAEGWLSPESLATVALHLRVPQSEVYGV 59
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
A Y +F+L+ G+R V+VC C ++G L+ +N++ + D +++ EE
Sbjct: 60 AGHYPEFRLTKPGSR-LVRVCTGVSCRIQGGLTLLHALQNRLGLTVGETSQDHSVTLEEA 118
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS--SAPAGG 196
+C C AP+V + Y L +RL+ I + P R S SAP
Sbjct: 119 DCLFRCAMAPVVEVDHRCYGRLDTDRLDSIFN--------PPSP-----RKSLVSAP--- 162
Query: 197 LTSLLDNNSKKR 208
SLL ++
Sbjct: 163 --SLLTSDGDTP 172
>gi|78222327|ref|YP_384074.1| bidirectional hydrogenase complex protein HoxE [Geobacter
metallireducens GS-15]
gi|78193582|gb|ABB31349.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
subunit HoxE [Geobacter metallireducens GS-15]
Length = 205
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S+ V I ++ A+I +L AQE G++S + VA L + + +V +
Sbjct: 31 SDPRFQAVERTIKQF--QCRADALIEVLHVAQEAFGYLSDELMAHVARQLKIPFSQVYGV 88
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
ATFY F L P G VC T C ++ +++ + K DG L+ +
Sbjct: 89 ATFYHFFSLEPRGA-HTCVVCTGTACYVKRSAEILVRLEQEFRVKAGKTTEDGGLTLSTI 147
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
C G+C AP++++ +T TP+ + A
Sbjct: 148 RCLGSCGQAPVMVLDGETVGQCTPDSAVVAVKALQESGRPRP 189
>gi|156741349|ref|YP_001431478.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus
castenholzii DSM 13941]
gi|156232677|gb|ABU57460.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Roseiflexus
castenholzii DSM 13941]
Length = 173
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + ++ A+I +L RAQE G++S + +AN L + RV +ATFY
Sbjct: 24 KLLEATMKKH--QYRPDALIEVLHRAQELFGYLSNDLLLYIANSLHLPPSRVYGVATFYH 81
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L+P G VC T C +RG ++ + + H DG LS E C GA
Sbjct: 82 FFSLAPKGE-HSCVVCLGTACYVRGAAAILAAAEQTLGIRAGHTTPDGRLSLETARCLGA 140
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP V+ TPE+++ ++
Sbjct: 141 CGIAPTVVFDGAITGHQTPEQVQVWLERLKE 171
>gi|172037234|ref|YP_001803735.1| NADH dehydrogenase I subunit E [Cyanothece sp. ATCC 51142]
gi|171698688|gb|ACB51669.1| probable NADH dehydrogenase I chain E [Cyanothece sp. ATCC 51142]
Length = 173
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ +E VA+ L + RV +ATFY F L P +
Sbjct: 31 NHYRQDALIEILHKAQEAFGYLEPDVLEYVAHALKLPLSRVYGVATFYHLFSLKP-SGKH 89
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +K++ + ++ K +D +S C GAC AP V+
Sbjct: 90 TCVVCLGTACYVKGSDKILAALQQELGIKSGETTADKQISLLSARCLGACGIAPAVVFDG 149
Query: 155 DTYEDLTPERLEEIIDAFST 174
+ T E + ++
Sbjct: 150 EVTGKQTAENV---LEKIKN 166
>gi|148657646|ref|YP_001277851.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus sp.
RS-1]
gi|148569756|gb|ABQ91901.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Roseiflexus sp.
RS-1]
Length = 178
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + ++ A+I +L RAQE G++S + +AN L + RV +ATFY
Sbjct: 24 KLLEATMKKH--QYRPDALIEVLHRAQELFGYLSTDLLLFIANSLHLPPSRVYGVATFYH 81
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L+P G VC T C +RG ++ + K H DG LS E C GA
Sbjct: 82 FFSLAPKGE-HSCVVCLGTACYVRGAAAILAAAEQMLGIKAGHTTPDGRLSLETARCLGA 140
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
C AP V+ TPE+++ ++ TG+G +
Sbjct: 141 CGIAPTVVFDGTVTGHQTPEQVQVWLERL-TGEGLKAK 177
>gi|260576445|ref|ZP_05844435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
SW2]
gi|259021328|gb|EEW24634.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
SW2]
Length = 157
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E+++ + + ++P+L Q G V + A+ ++A L+++ V + +FY
Sbjct: 10 ARVAEILAAH--QGLEGPLLPILHALQAAFGHVPQEALPLIAKNLNLSRAEVHGVMSFYH 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F + R +++C C G EKL R + + DG ++ E V C G
Sbjct: 68 DF-RAAPAGRHVLKLCRAEACQAMGAEKLAAHARTSLGIEWHETTRDGAVTLEPVFCLGL 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP ++ + R + ++
Sbjct: 127 CACAPAALMDGKVVGRVDEARFDALVAEVRA 157
>gi|50083952|ref|YP_045462.1| NADH dehydrogenase subunit E [Acinetobacter sp. ADP1]
gi|49529928|emb|CAG67640.1| NADH dehydrogenase I chain E [Acinetobacter sp. ADP1]
Length = 170
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP ++A + L Q + GWV A + +A +L ++ + +ATFY + PVG
Sbjct: 33 YP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQMLSISVADLEGVATFYNRIYRQPVG- 89
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + +C + C L G E L E + ++ + +DG + + C G C P +MI
Sbjct: 90 RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPTLMI 149
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DT+ + ++++++ +
Sbjct: 150 DEDTHGLVDVSSVKQLLEKY 169
>gi|269837268|ref|YP_003319496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269786531|gb|ACZ38674.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 180
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 22 SAIWVNEVISR-YPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ ++ R + Q A ++ AQ GWV + A +V+A+ L ++ RV
Sbjct: 12 DLEPLKRILERDFRYDTHQDAEELILGACQEAQNLYGWVPQPAAQVIADHLGVSVNRVYS 71
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F+ P G + + +C T C + G ++LI R++ DG L+ +
Sbjct: 72 LLTFYADFRTEPPG-KHFLLLCHGTACYVMGSQRLIATLRDEYGITNGEVTRDGELTLQV 130
Query: 138 VE-CQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
V C G C AP++ + TY LTP+RL E ++A G+
Sbjct: 131 VNGCLGVCDLAPVIQVDHHTYCGRLTPDRLRETLEALKRGEP 172
>gi|237755576|ref|ZP_04584193.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692275|gb|EEP61266.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 160
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + E + +I L + ++ + ++N L++ ++
Sbjct: 6 LTPEIINKIEEYKKEFLTKEQ--VIIQALHLIYSKYRDITLDHMLELSNYLEVPLSQIEG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I +FY F++ R H++VC PC + GC+KLIE+ ++ + +G E
Sbjct: 64 IVSFYDMFRVKRN-ARHHIRVCKNLPCHIMGCKKLIELFEKLTGEERNQESKNGRFYIET 122
Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
VEC GAC AP MI D Y+ +T E+L EI+ +
Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159
>gi|190893705|ref|YP_001980247.1| formate dehydrogenase, gamma subunit [Rhizobium etli CIAT 652]
gi|190698984|gb|ACE93069.1| formate dehydrogenase protein, gamma subunit [Rhizobium etli CIAT
652]
Length = 159
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L Q++ G+V + A+ V+A L+++ V + TFY + R +++
Sbjct: 25 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDY-RDHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L E + + DG+++ E V C G C AP M+ + +
Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVHG 143
Query: 159 DLTPERLEEIIDAFS 173
+ + E++
Sbjct: 144 RVDEQLATELVAEAR 158
>gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Comamonas testosteroni KF-1]
gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Comamonas testosteroni KF-1]
Length = 717
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ I+ + ++I LL Q G++ RAA+ +A L+++ V + ++
Sbjct: 27 EREALEHAIADHAA--RPGSLIELLHSLQNALGFIPRAAVPAIAEALNLSRAEVHGVVSY 84
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y R +Q+C C RG + L + + + ++DG+++ E V C
Sbjct: 85 YPHL-REQPHGRTLIQICRAEACKSRGGDALFAHAQAAMGCQAHGTSADGSVTLEPVYCL 143
Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
G C +P VM+ + + + +T +RL+ ++ Q +T
Sbjct: 144 GLCAQSPAVMVDESEVHARMTEDRLDALLAKIQQEQLET 182
>gi|170720891|ref|YP_001748579.1| formate dehydrogenase subunit gamma [Pseudomonas putida W619]
gi|169758894|gb|ACA72210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
W619]
Length = 160
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++SR+ A++P+L QE G++ AA+ +A+ L+++ V + +FY F
Sbjct: 11 IQSILSRH--QDTPGALLPILHAVQESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R +++C C RG E L R ++ ++DG +S V C GAC
Sbjct: 69 RT-APPARHTLRLCRAESCQSRGSEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
+P + + + LTPERL +++
Sbjct: 128 CSPALELDGQVHARLTPERLRSLVN 152
>gi|89073314|ref|ZP_01159844.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
SKA34]
gi|89051024|gb|EAR56488.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
SKA34]
Length = 188
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+++ + E I+ YP ++ I L Q++ G++++ ++ +V+ + D++ ++ E
Sbjct: 2 LTDQERAHLEEHIAHYPE--KRAGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT + PVG R ++VC + C RG +K++E N + +DG+++
Sbjct: 60 LITFYTLLRRRPVG-RNIMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118
Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFSTGQ 176
C G C AP +I D E +LTPER+ I+ + +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158
>gi|253698813|ref|YP_003020002.1| NADH dehydrogenase subunit E [Geobacter sp. M21]
gi|251773663|gb|ACT16244.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
Length = 155
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++E + + R A+ P ++ Q GW++ A+ A +L ++ ++V E+A
Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAAALLGLSPLQVEELA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY PVG + + VC + C C+ +IE + ++ + +DG +
Sbjct: 62 TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C ++P + +G Y LTP ++EI++
Sbjct: 121 CMGRCGDSPAMSVGDTPYGHLTPHLVDEILEKERA 155
>gi|70733836|ref|YP_257476.1| formate dehydrogenase subunit gamma [Pseudomonas fluorescens Pf-5]
gi|68348135|gb|AAY95741.1| formate dehydrogenase, gamma subunit [Pseudomonas fluorescens Pf-5]
Length = 158
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ ++ R+ S A++P+L + QE+ G++ AI +A+ L+++ V + +FY F
Sbjct: 11 IHRLLERHKDS--PGALLPILHQIQEELGYIPDPAIPEIAHSLNLSQAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
S R +++C C RG E+L R ++ ++DG +S V C GAC
Sbjct: 69 -RSAPPARHILRLCRAESCQSRGAEQLAAQLRERLQLDDHGSSADGNISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + L+ ERL+ ++D+
Sbjct: 128 CSPALELDGQLHARLSAERLDALLDSCRED 157
>gi|170076826|ref|YP_001733464.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
sp. PCC 7002]
gi|169884495|gb|ACA98208.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
sp. PCC 7002]
Length = 163
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G +
Sbjct: 23 NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKG-KH 81
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G ++L++ +H KP D +S C GAC AP V+
Sbjct: 82 TCVVCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 141
Query: 155 DTYEDLTPERLEEIIDAFSTG 175
+ +++ + S G
Sbjct: 142 EVCGKQNADQVMARLRQLSEG 162
>gi|298384457|ref|ZP_06994017.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
gi|298262736|gb|EFI05600.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
Length = 303
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V + ++ +I +L AQ G++ ++A+ L + +V + TFYT
Sbjct: 12 EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA
Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128
Query: 144 CVNAPMVMIGKD 155
C AP+VMIG+
Sbjct: 129 CGLAPVVMIGEK 140
>gi|284009323|emb|CBA76484.1| NADH-quinone oxidoreductase chain E [Arsenophonus nasoniae]
Length = 153
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
++ ++A I L Q++ GWV AI +A++L + V +ATFY+Q PVG
Sbjct: 13 KHHYEDARAASIEALKIVQKKRGWVEDGAIYAIASLLGIPASDVEGVATFYSQIYRQPVG 72
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R ++ C + C + G + + + P +DG + C G C P +M
Sbjct: 73 -RHIIRYCDSVVCHITGYQGIETEIIKLLQIAPGQTTADGRFTLLPTCCLGNCDKGPTMM 131
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + P ++ +++ +
Sbjct: 132 IDEDTHSHVKPSDIQRLLEQY 152
>gi|171059433|ref|YP_001791782.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
cholodnii SP-6]
gi|170776878|gb|ACB35017.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
cholodnii SP-6]
Length = 173
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ + V VI+ + A++P+L Q+ G + A+ +A L+++ V +
Sbjct: 8 DAALATVRAVIAE--RAHLAGALLPILHGVQDAIGHIPSEAVPEIARALNLSRAEVHGVI 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEV 138
T+Y F+ P R +QVC C RG E L+ R ++ HR++DG S E V
Sbjct: 66 TYYHHFRAEP-AGRHVLQVCRAESCQARGGEALLAQARERLGCSADVHRSADGAWSVEPV 124
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C ++P + I + + +T RL+ ++DA
Sbjct: 125 YCLGLCASSPAIQIDERQHARVTATRLDALLDA 157
>gi|293609136|ref|ZP_06691439.1| predicted protein [Acinetobacter sp. SH024]
gi|292829709|gb|EFF88071.1| predicted protein [Acinetobacter sp. SH024]
gi|325121084|gb|ADY80607.1| NADH dehydrogenase I chain E [Acinetobacter calcoaceticus PHEA-2]
Length = 169
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
YP ++A + L Q + GWV A + +A +L M+ + +ATFY + PVG
Sbjct: 31 HYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHPVG 88
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + +C + C L G E L E + ++ + DG + + C G C P +M
Sbjct: 89 -RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPTLM 147
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + ++++++ +
Sbjct: 148 IDEDTHGLVEVTSIKQLLEKY 168
>gi|197116577|ref|YP_002137004.1| NADH dehydrogenase subunit E [Geobacter bemidjiensis Bem]
gi|197085937|gb|ACH37208.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
Length = 156
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++E + + R A+ P ++ Q GW++ A+ A++L ++ ++V E+A
Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAASLLGLSPLQVEELA 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY PVG + + VC + C C+ +IE + ++ + +DG +
Sbjct: 62 TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C ++P + +G Y LTP ++EI++
Sbjct: 121 CMGRCGDSPAMSVGGTPYGHLTPHLVDEILEK 152
>gi|332715499|ref|YP_004442965.1| NAD-dependent formate dehydrogenase subunit gamma [Agrobacterium
sp. H13-3]
gi|325062184|gb|ADY65874.1| NAD-dependent formate dehydrogenase gamma subunit [Agrobacterium
sp. H13-3]
Length = 178
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ A V +I + ++P+L R QE+ G+V + +V+A L+++ V +
Sbjct: 27 ADEATRVQAIIDD--CLHMEGPMLPILHRVQEEFGYVPDSVKQVIALALNVSRAEVHGVV 84
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F G R +++C C GCE L + + K+ DG+++ E V
Sbjct: 85 SFYPDF-RDHPGGRHVLKLCRAEACQSMGCESLADTIKGKLGLDWHQTAKDGSVTLEPVF 143
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C G C AP +M+ + + + L +I+
Sbjct: 144 CLGLCAQAPALMLDGEVHARVDEHCLGDILAEVR 177
>gi|327188942|gb|EGE56134.1| formate dehydrogenase subunit gamma [Rhizobium etli CNPAF512]
Length = 182
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L Q++ G+V + A+ V+A L+++ V + TFY + R +++
Sbjct: 48 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDY-RDHPAGRHVLKL 106
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L E + + DG+++ E V C G C AP M+ + Y
Sbjct: 107 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 166
Query: 159 DLTPERLEEIIDAFS 173
+ + E++
Sbjct: 167 RVDDQLATELVAEAR 181
>gi|218509481|ref|ZP_03507359.1| formate dehydrogenase subunit gamma [Rhizobium etli Brasil 5]
Length = 159
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L Q++ G+V + A+ V+A L+++ V + TFY + R +++
Sbjct: 25 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDY-RDHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L E + + DG+++ E V C G C AP M+ + Y
Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143
Query: 159 DLTPERLEEIIDAFS 173
+ + E++
Sbjct: 144 RVDDQLATELVAEAR 158
>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
eutropha H16]
gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
eutropha H16]
Length = 602
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 3/161 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ ++ RY R + +I +L Q + G + A + + L ++ + + E A+FY
Sbjct: 3 SRITTILERYRSDRTR--LIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYH 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L + + +C + + G + + E + + + +G + C G
Sbjct: 61 FF-LDKPSGKYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGL 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
P ++I K + L P ++ +II G+ P
Sbjct: 120 SDQEPAMLIDKVVFTRLRPGKITDIIAQLKQGRSPAEIANP 160
>gi|189425851|ref|YP_001953028.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
SZ]
gi|189422110|gb|ACD96508.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
SZ]
Length = 171
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V + R A+I +L AQE G++SR + VA L + +V +ATFY
Sbjct: 17 LKLVERAMKR--LQYQPDALIEVLHTAQEAFGYLSRELLAHVAARLKLPESQVFGVATFY 74
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F L P G VC T C ++G +++ K +DG LS C G
Sbjct: 75 HFFTLRPKGE-HSCIVCTGTACYVKGAGEILGRLEQAAGIKAGQTTADGRLSLGTARCLG 133
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C APM+M+ + PE + +D
Sbjct: 134 NCSLAPMMMLDDTVHG---PESPDGAVDKL 160
>gi|298528248|ref|ZP_07015652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511900|gb|EFI35802.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 161
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
+F E + +I R + +IP L Q + G++ ++ ++ L+++
Sbjct: 4 EDMNFD-EKMGELGAIIGE--EERKRGILIPALHEIQNKMGYLDPEELKELSKSLNISLT 60
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ +A+FY F P G + V+VC T C +RG + +++ + K D T+
Sbjct: 61 EIYSVASFYKMFHFKPRGKK-IVKVCFGTACYVRGAKVVLDSLSEEFDVKDGETTEDLTM 119
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ E V C G C AP+V ++ ++ ++L+ ID+
Sbjct: 120 TLETVGCVGCCGLAPVVTCNEEVVGEIDGKKLDAFIDSVKE 160
>gi|222054363|ref|YP_002536725.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
gi|221563652|gb|ACM19624.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
FRC-32]
Length = 169
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A + ++ Q GW++ A+ A +L ++ ++V E+ATFY PVG + + V
Sbjct: 21 REAAVDVMKELQLHYGWLTDEAVVEAAGLLGLSPLQVEELATFYEMIYRQPVGKQ-VIHV 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C G E ++ + KP +DG + C G C + P +MIG+ Y
Sbjct: 80 CDSISCWAMGGETMMAHLAGLLGIKPGETTADGQFTLLPCACLGNCGDGPTMMIGEKIYG 139
Query: 159 DLTPERLEEIIDAFSTGQGDTI 180
LT L E+I F +T
Sbjct: 140 KLTVPLLTEMIGWFRGAAIETP 161
>gi|226227789|ref|YP_002761895.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
aurantiaca T-27]
gi|226090980|dbj|BAH39425.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
aurantiaca T-27]
Length = 166
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ +++++ P ++P+L + Q G+VS+ A+ +A +++ V + TF
Sbjct: 8 EQAVIADLLAQSPTG--AEHLLPVLQQVQATVGFVSQDAMRQIAQAFNISRADVYGVVTF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
YT + +PVG +Q+C C GC +L + + +D + E C
Sbjct: 66 YTDLREAPVGQ-YVMQLCMAEACQSVGCRELAAHATHVLGVPLGQTTADHRIHLEAAYCF 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
G C P + I +TP R +E++
Sbjct: 125 GNCALGPTMRIDDRIVGGVTPARFDELLAEL 155
>gi|332285352|ref|YP_004417263.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
gi|330429305|gb|AEC20639.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
Length = 168
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 6/158 (3%)
Query: 17 SFSEES---AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F+ + + + RY ++P+L Q G + A+ V+A L +
Sbjct: 9 EFNPSNETVQQVALQALERY--EGQPGNLLPILHAIQHALGCIPALAVPVLAKALQRSRA 66
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ + +FY F ++VC C G L E R ++ ++G +
Sbjct: 67 EIQGVISFYPHF-REKPAGAVMLEVCRAESCQAMGGNALAEHARQQLGCNFDDTTANGAV 125
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ + V C G C +P VMI + +TPE+L+ ++ A
Sbjct: 126 TLQAVYCLGLCAQSPAVMINGQPHARMTPEKLDRLLQA 163
>gi|296132536|ref|YP_003639783.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
gi|296031114|gb|ADG81882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
JR]
Length = 179
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 3/167 (1%)
Query: 17 SFSEESAIWVNEVISR--YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
SE+ + V + + + ++P+L Q G+V + A++ ++ LD+ +
Sbjct: 4 QLSEQELKEIRSVTEKALQKNNADREKLLPILQEVQHNLGYVPKQAMQQISEALDIPEVE 63
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + TFY QF+L + ++VC T C + G +++ +++ K D S
Sbjct: 64 IYGVTTFYNQFRL-NPPGKHQIKVCMGTACHMTGGHIIMDSFARRLNIKEGETTPDREFS 122
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
E V C G C AP+V+I + + P R++ I+ F + +
Sbjct: 123 LERVACVGCCALAPVVVIDEKIEGKVRPTRVDGILLGFEMEKKAQEK 169
>gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
[Magnetospirillum magneticum AMB-1]
gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
[Magnetospirillum magneticum AMB-1]
Length = 627
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V+ V++R+ + ++ +L QE+ W+S + VA + +V +A FY F
Sbjct: 23 VSAVLARHGADGTR--LMQILREIQEETEWLSPDILTRVAEGTRLPRGQVEGVAGFYHFF 80
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
P+G R V + G L+ K+ KP + DG +S + C G C
Sbjct: 81 HTEPLG-RYRVLWSDNITDRMAGNADLMARMCKKLWLKPGRVSEDGLVSVDTTSCTGLCD 139
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
P +++ +T +R+++I++
Sbjct: 140 QGPALLVNYRPITRMTAQRVDQIVELIR 167
>gi|325274758|ref|ZP_08140794.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
gi|324100102|gb|EGB97912.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
Length = 160
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++R A++P+L Q ++ AA+ +A+ L+++ V + +FY F
Sbjct: 11 IQRILAR--DKDTPGALLPMLHAIQHDLCYIPDAAVPELAHALNLSLAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +++C C RG E L R ++ ++DG +S V C GAC
Sbjct: 69 RTAP-PARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+P + + + LTPERL +++A
Sbjct: 128 CSPALELDGQVHARLTPERLRALVNACQED 157
>gi|307153310|ref|YP_003888694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
7822]
gi|306983538|gb|ADN15419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
7822]
Length = 179
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 17/180 (9%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEV----------ISRYPPSRCQSAVIPLLMRAQ 50
M ++ + Q S + ++ Q A+I +L +AQ
Sbjct: 1 MQTAKVNPKSEQ------SSANKEKAEHASGDKRFKVLDVTMKRNQYRQDALIEVLHKAQ 54
Query: 51 EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE 110
E G++ + +A L + +V +ATFY F L P VC T C ++G +
Sbjct: 55 EAFGYLEDDVLLYIARHLKLPLSQVYGVATFYHLFSLKP-SGEHTCVVCLGTACYVKGGD 113
Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
K++ ++ K ++DG +S C GAC AP V+ E + + I
Sbjct: 114 KILSELEKQLGVKVGETSADGKVSLVSARCIGACGIAPAVVFDGAVAGKQDLEAVSQKIK 173
>gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
KLH11]
gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
KLH11]
Length = 567
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P F++E+ + ++ P R + +I L Q++ G +S I +A + +
Sbjct: 27 PKGRQFTDEAQAEILRLLGDRP--RRRDLLIEFLHLIQDEHGHISADHIAALATEMRIGQ 84
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E ATFY F + ++VC + C + G ++L + + +
Sbjct: 85 AEIYETATFYAHFDVVKEDETPPPALTIRVCDSLSCEMAGAQQLQKALEDGLDPAA---- 140
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + + TPE+++ A + P +
Sbjct: 141 ----VRVVRAPCMGRCDTAPVLEIGHNHIDHATPEKVQA---AIAADDTHAHLPDYETYA 193
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+A GG T L + +K +DD +S
Sbjct: 194 AFTAN-GGYTKLKELRDGGDWEKVQDDILS 222
>gi|302037259|ref|YP_003797581.1| formate dehydrogenase subunit gamma [Candidatus Nitrospira
defluvii]
gi|300605323|emb|CBK41656.1| Formate dehydrogenase, gamma subunit [Candidatus Nitrospira
defluvii]
Length = 149
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V ++++ S ++ L+ QEQ G V A+ +A+ L + +V + ++Y
Sbjct: 3 EQVKSILAK--VRSEPSNILKALLALQEQLGHVPTEAVPDIAHALGVTTAQVAGVLSYYP 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+L+ G R ++VC C GC +L+ ++++ + G + + + C G
Sbjct: 61 DLRLTAPG-RHLIRVCMGESCYANGCGRLLRELQDRLRVDVGETAAGGKFTLDTMSCAGN 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C +P VMI +D + L P +L+ +++ +
Sbjct: 120 CAVSPTVMIDRDLHGRLLPSQLDTLLERYK 149
>gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Sideroxydans lithotrophicus ES-1]
gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Sideroxydans lithotrophicus ES-1]
Length = 603
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 3/157 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
F W+++++ R+ R + ++ +L QE G + + A+ V+A L + R+
Sbjct: 9 FDVSDLSWLDKLVMRH--GRDATRLLQILREIQESFGHIPQQAVSVLAAKLSIPRSRIES 66
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+A+FY+ L P V + G + L++ + +P + DG +S
Sbjct: 67 VASFYSFLHLKP-HGEYRVLFSDNITDRMLGSQDLMDQMCQLLWLQPGKVSEDGLVSIGT 125
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P +++ +T +R++EI
Sbjct: 126 TSCTGMCDQGPALLVNGRAITRMTHQRVQEIAQLIRN 162
>gi|316932166|ref|YP_004107148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris DX-1]
gi|315599880|gb|ADU42415.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris DX-1]
Length = 156
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+E+I+ + A + +L QE G+V + A ++A L+++ V + TFY
Sbjct: 9 ARASEIIAG--LTHKDGATLLMLQALQEAFGYVPQDAEPMIAQALNLSRAEVHGVLTFYP 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ P G R +++C C G + L+ ++ +DG ++ E C G
Sbjct: 67 DFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGL 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEII 169
C AP MI + L +L+ ++
Sbjct: 126 CATAPSAMINERVVGRLDAGKLDALL 151
>gi|162148251|ref|YP_001602712.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542891|ref|YP_002275120.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786828|emb|CAP56411.1| putative NADH-quinone oxidoreductase chain E [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530568|gb|ACI50505.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 164
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 20 EESAIWVNEVI--SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ + ++ + YP + A L Q + GWV A + ++++ ++ +
Sbjct: 10 PDLKAEIAAMVRAADYPRAVSVGA----LAAVQARFGWVCDAHLAELSDLTGLSVADLDG 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ATF+ PVG R + +C + C + G + L +++ +P DG ++
Sbjct: 66 VATFFNLIFRRPVG-RHVIMMCDSVSCWIMGRDALCARLCDRLGIRPGQTTPDGAVTLLP 124
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C G C +AP +++ + + D+ ++ I D
Sbjct: 125 IVCLGHCDHAPALLVDRTLHGDVDEAGIDRIADNVR 160
>gi|148259852|ref|YP_001233979.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Acidiphilium
cryptum JF-5]
gi|326403220|ref|YP_004283301.1| putative formate dehydrogenase gamma subunit [Acidiphilium
multivorum AIU301]
gi|146401533|gb|ABQ30060.1| formate dehydrogenase gamma subunit [Acidiphilium cryptum JF-5]
gi|325050081|dbj|BAJ80419.1| putative formate dehydrogenase gamma subunit [Acidiphilium
multivorum AIU301]
Length = 157
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++E+ VI Y + ++P+L QE G++ R A ++A++L++
Sbjct: 3 PKPAEWNDEA---ARAVIRDYLG--EEGPLLPILHALQENFGFIPREAEPLIADMLNITR 57
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V + +FY F+ R +++C C G E + + + DG
Sbjct: 58 AEVHGVISFYHDFRR-APAGRHVLKLCRAEACQSMGSEANARRLLDALGLEWGGTTPDGR 116
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
++ E V C G C AP + + LE ++
Sbjct: 117 ITVEAVYCLGLCATAPSALFDDEPVGRADAATLEALVAE 155
>gi|237734767|ref|ZP_04565248.1| NADH dehydrogenase [Mollicutes bacterium D7]
gi|229382095|gb|EEO32186.1| NADH dehydrogenase [Coprobacillus sp. D7]
Length = 160
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E ++E+++++ + ++ L Q + G++ A+E ++ + + +V +
Sbjct: 3 QEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVYGVV 60
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY+QF P G + + VC T C + G + ++++ + + DG S +
Sbjct: 61 TFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATR 119
Query: 140 CQGACVNAPMVMIGKDTYE 158
C GAC AP+V + +
Sbjct: 120 CVGACGLAPVVSVDGIVFG 138
>gi|192289231|ref|YP_001989836.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
TIE-1]
gi|192282980|gb|ACE99360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris TIE-1]
Length = 156
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+++I+ + + A + +L Q+ G+V A ++A L+++ V + TFY
Sbjct: 9 ARASDIIAG--LTHKEGATLLMLQALQQAFGYVPPDAEPMIAQALNLSRAEVHGVLTFYP 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ P G R +++C C G + L+ ++ +DG ++ E C G
Sbjct: 67 DFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGL 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C AP MI + L +L+ ++
Sbjct: 126 CATAPSAMINERVVGRLDAGKLDALLAE 153
>gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum
ferrodiazotrophum]
Length = 624
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
++ + +++ + AVIP+ E+E +VS A+E++ I + +L + T
Sbjct: 7 DTKQDLEKILQEWDNPGQ--AVIPMFHYFMERENYVSPEALELIGQITGFSQSDLLGVGT 64
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY F R ++VC TPC+ G + L+ + ++ DG S + +C
Sbjct: 65 FYQYFSF-HKEGRHIIRVCLATPCVYCGGKGLLSALQKELGIGLDETTPDGVFSLKPAQC 123
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPGP 184
G C AP ++I + + ++TP + ++ + G+ + GP
Sbjct: 124 VGQCHEAPTLVIDTNIHNNVTPGEIPALLKQYREGKVSPQPAVPMGP 170
>gi|86359440|ref|YP_471332.1| formate dehydrogenase subunit gamma [Rhizobium etli CFN 42]
gi|86283542|gb|ABC92605.1| formate dehydrogenase, gamma subunit protein [Rhizobium etli CFN
42]
Length = 159
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P+L + Q++ G+V + A+ V+A L+++ V + TFY + R +++
Sbjct: 25 EGPLLPILHQVQQEFGYVPQQALPVIAEELNLSRAEVHGVMTFYHDY-RDHPAGRHVLKL 83
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G + L E + + DG+++ E V C G C AP M+ + Y
Sbjct: 84 CRAEACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143
Query: 159 DLTPERLEEIIDAFS 173
L + E++
Sbjct: 144 RLDDQLATELVAEAR 158
>gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synechococcus sp. PCC 7002]
Length = 170
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G +
Sbjct: 30 NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKG-KH 88
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G ++L++ +H KP D +S C GAC AP V+
Sbjct: 89 TCVVCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 148
Query: 155 DTYEDLTPERLEEIIDAFSTG 175
+ + L + S G
Sbjct: 149 EVCGKQNADHLMARLRQLSEG 169
>gi|209525023|ref|ZP_03273567.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
CS-328]
gi|209494432|gb|EDZ94743.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
CS-328]
Length = 178
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ + VA L + +V +ATFY F L P
Sbjct: 37 SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLKLPLSQVYGVATFYHLFSLKP-SGAH 95
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +++ K K DG +S C GAC AP +
Sbjct: 96 TCVVCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155
Query: 155 DTYEDLTPERLEEIIDA 171
TPE ++
Sbjct: 156 KVAGQQTPEMAVARLEQ 172
>gi|257058014|ref|YP_003135902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
8802]
gi|256588180|gb|ACU99066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
8802]
Length = 179
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
+ + ++ QP++ F V E+ + Q A+I +L +AQE G++ +E +
Sbjct: 13 KQSLDQKQPNNKRF------KVLEITMK-RNHYRQDALIEILHKAQESFGYLEPDVLEYI 65
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A L + RV +ATFY F L P G VC T C ++G +K++ + ++ K
Sbjct: 66 ARGLKLPLSRVYGVATFYHLFSLKPNGE-HSCIVCMGTACYVKGSDKILAALQQELGIKS 124
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
D + C GAC AP V+ + + PE + + A
Sbjct: 125 GETTEDNQVFLTSARCLGACGIAPSVIFDGEVAGKVEPEIAIKKVKA 171
>gi|169351258|ref|ZP_02868196.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
gi|169292320|gb|EDS74453.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
Length = 163
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+E ++E+++++ + ++ L Q+ G++ A+E ++ +++ +V
Sbjct: 3 KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQDSLGYIPFEAMEKISKAINVPVSKVY 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+QF P G + + VC T C + G + ++++ + + DG S +
Sbjct: 61 GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 119
Query: 137 EVECQGACVNAPMVMIGKDTYE 158
C GAC AP+V + +
Sbjct: 120 ATRCVGACGLAPVVSVDGTVFG 141
>gi|254426024|ref|ZP_05039741.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Synechococcus sp. PCC 7335]
gi|196188447|gb|EDX83412.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Synechococcus sp. PCC 7335]
Length = 192
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 7 AEEEFQPSSFSFSE----------ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEG 54
+ QP+S + E W + + R+ A+I +L +AQE
Sbjct: 4 SPASTQPTSTESTPVQGHSVEGDLEDKRWQLLAATMKRH--QYRSDALIEVLHKAQELFD 61
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
++S + VA L + +V +ATFY F L VC T C ++G +L+
Sbjct: 62 YLSPTLLAEVAKSLQLPLSQVYGVATFYHFFSL-APSGHHSCTVCLGTACYVKGAAQLLA 120
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
++ +P +DG +S C GAC AP+V++ T E + + IDA
Sbjct: 121 KLEQRLGIQPGQTTADGEMSLSTARCLGACGIAPVVVVDDAIAGHQTTETIIQRIDASLQ 180
Query: 175 GQG 177
+
Sbjct: 181 DKP 183
>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
Length = 780
Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V+ +I R + +IPLL Q++ ++ A+ V ++ +++ ++TFY+
Sbjct: 3 ARVDAIIDR--IGTSRRDIIPLLQALQDEFSYLPSDALLRVYERTEIDRAQLISVSTFYS 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQG 142
QF+ P G + ++VC T C ++G + + R ++ + +D S E++ C G
Sbjct: 61 QFRHVPYG-KHIIKVCTGTACHVKGANNVYDAFRRELKMEEDRITTADQEYSIEKIACLG 119
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C AP+V I + Y + P R+ E++D F
Sbjct: 120 CCALAPVVQIDEKIYGHVQPGRVNEVLDEFR 150
Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 26/118 (22%)
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA---------HVQVCGTTPCMLRGCEKLIEVC--- 116
+ RV E+ + + +++ C G ++ +
Sbjct: 136 HVQPGRVNEVLDEFRIYNQEHEREEEGNATRQIVGEIRLGMENCCQASGTSEIYQAVIKA 195
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-----DTYEDLTPERLEEII 169
+++ + + V C GAC P++ + + Y ++ PE ++EI+
Sbjct: 196 SDELGIEVN---------IKPVSCVGACNQVPLIDVAHPDGSIERYPNVRPEEIKEIL 244
>gi|260551030|ref|ZP_05825235.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
RUH2624]
gi|260405978|gb|EEW99465.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
RUH2624]
Length = 169
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
YP ++A + L Q + GWV A + +A +L ++ + +ATFY + PVG
Sbjct: 31 HYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPVG 88
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + +C + C L G E L E + ++ + DG + + C G C P +M
Sbjct: 89 -RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTLM 147
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + ++++++ +
Sbjct: 148 IDEDTHGLVEVTSVKQLLEKY 168
>gi|163853800|ref|YP_001641843.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
extorquens PA1]
gi|218532744|ref|YP_002423560.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
chloromethanicum CM4]
gi|240141252|ref|YP_002965732.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
subunit [Methylobacterium extorquens AM1]
gi|254563761|ref|YP_003070856.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit
gamma [Methylobacterium extorquens DM4]
gi|28207553|gb|AAO32144.1| NAD-linked formate dehydrogenase gamma subunit [Methylobacterium
extorquens AM1]
gi|163665405|gb|ABY32772.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
extorquens PA1]
gi|218525047|gb|ACK85632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
chloromethanicum CM4]
gi|240011229|gb|ACS42455.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
subunit [Methylobacterium extorquens AM1]
gi|254271039|emb|CAX27046.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
subunit [Methylobacterium extorquens DM4]
Length = 157
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P R HV++
Sbjct: 23 EGATLPILHALQEAFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L +++ ++DG ++ E V C G C NAP ++ +
Sbjct: 83 CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANAPAALVDDEPLA 141
Query: 159 DLTPERLEEIIDAFST 174
L+ E L+ +
Sbjct: 142 RLSAESLDAALKEARA 157
>gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB]
gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Dechloromonas aromatica RCB]
Length = 632
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V+ V++RY R + ++ +L QE W+S AI+ + L + ++ +A FY F
Sbjct: 15 VDRVVARY--HRDPTCMVQILREVQEVCDWISPEAIDRMQVTLGVPRTKIEGVAGFYAFF 72
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
P G + V + G + +++ N + + + DG +S + C G C
Sbjct: 73 YTEPRG-KYRVLFSDNITDRMLGSKAMMDRLCNSLWVERGKVSEDGLVSVAQTACTGMCD 131
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
P ++I LT ER++EI + G+ P
Sbjct: 132 QGPALLINNYAIAGLTAERIDEIAELIR-GKVPLAEWPP 169
>gi|39933809|ref|NP_946085.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
CGA009]
gi|39647656|emb|CAE26176.1| putative NAD-dependent formate dehydrogenase gamma subunit
[Rhodopseudomonas palustris CGA009]
Length = 156
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+++I+ + + A + +L Q+ G+V + A +VA L+++ V + TFY
Sbjct: 9 ARASDIIAG--LTHKEGATLLMLQALQQAFGYVPQDAEPMVAQALNLSRAEVHGVLTFYP 66
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ P G R +++C C G + L ++ +DG ++ E C G
Sbjct: 67 DFRREPPG-RHVLKLCRAEACQAAGGDALAAHAETRLGVTFGATTADGAVTLEPAYCLGL 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C AP M+ + L +L+ ++
Sbjct: 126 CATAPSAMMNERVVGRLDAVKLDALLAE 153
>gi|215484516|ref|YP_002326751.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
baumannii AB307-0294]
gi|213985764|gb|ACJ56063.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
baumannii AB307-0294]
Length = 168
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
YP ++A + L Q + GWV A + +A +L ++ + +ATFY + PVG
Sbjct: 30 HYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPVG 87
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + +C + C L G E L E + ++ + DG + + C G C P +M
Sbjct: 88 -RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTLM 146
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + ++++++ +
Sbjct: 147 IDEDTHGLVEVTSIKQLLEKY 167
>gi|169797055|ref|YP_001714848.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AYE]
gi|184157032|ref|YP_001845371.1| NADH dehydrogenase subunit E [Acinetobacter baumannii ACICU]
gi|213156539|ref|YP_002318200.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
gi|239501291|ref|ZP_04660601.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB900]
gi|260555653|ref|ZP_05827873.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
baumannii ATCC 19606]
gi|301347791|ref|ZP_07228532.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB056]
gi|301510626|ref|ZP_07235863.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB058]
gi|301595911|ref|ZP_07240919.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB059]
gi|332852144|ref|ZP_08433971.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
gi|332867543|ref|ZP_08437696.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
gi|332872607|ref|ZP_08440575.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
gi|169149982|emb|CAM87876.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AYE]
gi|183208626|gb|ACC56024.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Acinetobacter
baumannii ACICU]
gi|193076537|gb|ABO11195.2| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
gi|213055699|gb|ACJ40601.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
gi|260410564|gb|EEX03862.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
baumannii ATCC 19606]
gi|322506931|gb|ADX02385.1| nuoE [Acinetobacter baumannii 1656-2]
gi|323516798|gb|ADX91179.1| NADH dehydrogenase subunit E [Acinetobacter baumannii TCDC-AB0715]
gi|332729516|gb|EGJ60855.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
gi|332733960|gb|EGJ65105.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
gi|332739136|gb|EGJ69995.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
Length = 169
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
YP ++A + L Q + GWV A + +A +L ++ + +ATFY + PVG
Sbjct: 31 HYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPVG 88
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + +C + C L G E L E + ++ + DG + + C G C P +M
Sbjct: 89 -RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTLM 147
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + ++++++ +
Sbjct: 148 IDEDTHGLVEVTSIKQLLEKY 168
>gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 319
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/207 (19%), Positives = 92/207 (44%), Gaps = 9/207 (4%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+++ + + ++ ++++YP ++P+++ +Q+G++S ++ +A + +V
Sbjct: 74 TYNADESAGLDSILAKYPDHPQY--LLPIVIEETDQKGYISDPSLVKIAKHVHPYPPQVE 131
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134
I + Y F V +C CM++G K+++ + + LH + DG +
Sbjct: 132 SILSHYHFFPRKYTSDTH-VYLCRCHNCMMKGQSKVMQALKERYGVDNLHSSVSRDGKFT 190
Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
+ + G CVN P +M+ G D E LT + + + +G+ +
Sbjct: 191 FHTMNWLGYCVNDGPAMMVKRRGGDYVEVLTGLTGDGVEQSLKGLKGNVFKWAKNKIVEQ 250
Query: 191 SAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ A G SL++NN + K K+
Sbjct: 251 TLKAEGRYSLIENNVAVKDAVSKAVKM 277
>gi|330720273|gb|EGG98632.1| NAD-dependent formate dehydrogenase gamma subunit [gamma
proteobacterium IMCC2047]
Length = 164
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V+E+I + A++P+L Q+ +G++ + A+ ++A L+ V + +F
Sbjct: 8 DRQRVSEII--HSTKSMAGALLPMLHAIQDSQGYIPKDAVPMIAESLNQTRAEVHGVISF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F R +++C C RG +L + K+ + S + V C
Sbjct: 66 YHHF-RQTPPARKRIEICRAEACQARGSRELEAYAKEKLGISYHGMTASRDFSLDPVYCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G C P V IG + + R +E++D
Sbjct: 125 GNCACGPSVRIGDEVVGRVDKTRFDELVDD 154
>gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum]
Length = 627
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++A E++ + AV+PLL E++ ++S A + ++ + ++ +L I
Sbjct: 10 EKNARSEKEILEEWSTPEQ--AVLPLLHYYMEKKNYISEADVSRISQLTGLSVSDILGIG 67
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F + + V+VC TTPC+ RG +K E + DG + +
Sbjct: 68 TFYQHF-VFHPTGKNSVRVCLTTPCLFRGGKKTFETLSKSLGIGLEETTPDGLFTLYPAQ 126
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G C AP I D Y + PE++ I+D + G+
Sbjct: 127 CLGQCSEAPSFSINDDVYVGIPPEKIPSILDEYRKGK 163
>gi|116515041|ref|YP_802670.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256895|gb|ABJ90577.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 156
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
F S+ + + Y S Q+A I L QE W+ + +I ++ IL + V
Sbjct: 2 FELSKLEISKILKKKKCYVNS--QAACIEALKIVQEHRKWICKDSIIAISKILSIPACEV 59
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
IATFY PVG R ++ C + C + + + + + ++ P SD +
Sbjct: 60 ESIATFYCHIFRKPVG-RNIIRYCDSVVCFINNFKSIKKKLKYILNISPGETTSDCRYTL 118
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC P++++ K Y LT + L I+D +
Sbjct: 119 LPTCCLGACDKGPVMLVNKTLYTRLTSKMLINILDKYK 156
>gi|220909417|ref|YP_002484728.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
7425]
gi|219866028|gb|ACL46367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
7425]
Length = 176
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
A+I +L +AQE G++ + +A L + RV +ATFY F L P
Sbjct: 37 QQYRPEALIEVLHKAQESFGYLEEEVLVYIARGLKLPLSRVYGVATFYHLFSLKP-SGAH 95
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G K+ E ++ K DG +S C GAC AP+V+
Sbjct: 96 TCVVCLGTACYVKGSNKVAEGLEQELGIKVGETTPDGKISLMAARCVGACGIAPVVVFDG 155
Query: 155 DTYEDLTPERLEEIIDA 171
PE I
Sbjct: 156 AVAGKQEPENTLARIKE 172
>gi|163760123|ref|ZP_02167206.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
gi|162282522|gb|EDQ32810.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
Length = 159
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
E A +++R + ++ +L QE G V ++A+ V+A L+++ V
Sbjct: 6 LDAEIASTTQAIVAR--SKALEGPLLTILHDVQEAFGHVPQSALPVIAEGLNLSRAEVHG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ +FY + R +++C C G ++L E + ++DG ++ E
Sbjct: 64 VVSFYHDY-REAPAGRHVIKLCRAEACQSMGGDELAERLMGLLGLDWHETSADGAVTLEP 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
V C G C AP M+ + L + + E+
Sbjct: 123 VYCLGLCACAPAAMVDGEVLGRLDADAVSEL 153
>gi|169634178|ref|YP_001707914.1| NADH dehydrogenase subunit E [Acinetobacter baumannii SDF]
gi|169152970|emb|CAP02016.1| NADH dehydrogenase I chain E [Acinetobacter baumannii]
Length = 169
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
YP ++A + L Q + GWV A + +A +L ++ + +ATFY + PVG
Sbjct: 31 HYP--YPRAASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPVG 88
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + +C + C L G E L EV + ++ + DG + + C G C P +M
Sbjct: 89 -RHVILLCDSIACFLMGAETLAEVFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTLM 147
Query: 152 IGKDTYEDLTPERLEEIIDAF 172
I +DT+ + ++++++ +
Sbjct: 148 IDEDTHGLVEVTSIKQLLEKY 168
>gi|161075749|gb|ABX56622.1| formate dehydrogenase gamma subunit [Methylacidiphilum infernorum
V4]
Length = 153
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + ++
Sbjct: 19 KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 77
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C GC K+I + + +DG L+ C G C N P V + Y
Sbjct: 78 ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 137
Query: 158 EDLTPERLEEIIDAF 172
+ +++E+++ +
Sbjct: 138 GRVNTQKMEKLLASI 152
>gi|218441076|ref|YP_002379405.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. PCC
7424]
gi|218173804|gb|ACK72537.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
7424]
Length = 166
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ + +A L + RV +ATFY F L P
Sbjct: 30 NQYRQDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSRVYGVATFYHLFSLKP-SGEH 88
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +K++ ++ K + DG +S C GAC AP V+
Sbjct: 89 TCVVCLGTACYVKGGDKILSDLEKQLGIKVGETSPDGKVSLVSARCIGACGIAPAVVFDG 148
Query: 155 DTYEDLTPERLEEIID 170
+ + E I+
Sbjct: 149 AVAGKQDSQSVIEKIE 164
>gi|189219242|ref|YP_001939883.1| NAD-dependent formate dehydrogenase gamma subunit
[Methylacidiphilum infernorum V4]
gi|189186100|gb|ACD83285.1| NAD-dependent formate dehydrogenase gamma subunit
[Methylacidiphilum infernorum V4]
Length = 159
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + ++
Sbjct: 25 KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C GC K+I + + +DG L+ C G C N P V + Y
Sbjct: 84 ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 143
Query: 158 EDLTPERLEEIIDAF 172
+ +++E+++ +
Sbjct: 144 GRVNTQKMEKLLASI 158
>gi|182413364|ref|YP_001818430.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
PB90-1]
gi|177840578|gb|ACB74830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
PB90-1]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 4/147 (2%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +I +L Q Q G++ R ++ L + R+ E+ TFY F+L P G V
Sbjct: 86 EEGNLIMILHAIQNQHGYIPREVAMELSRELGVKLARIYEVTTFYHYFKLQPPGAHNVV- 144
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C L+G ++ CRN++ ++D + V C G C +P +++ T+
Sbjct: 145 VCNGTACYLKGAGDILGECRNQLGIAEGQTSADRQFHLDTVRCIGCCGMSPAIVVDGKTH 204
Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGP 184
+ + II+A
Sbjct: 205 GRVKTSDVAGIINAVR---KPAPAAAS 228
>gi|85707198|ref|ZP_01038284.1| ATP synthase subunit E [Roseovarius sp. 217]
gi|85668252|gb|EAQ23127.1| ATP synthase subunit E [Roseovarius sp. 217]
Length = 154
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++ + + ++P+L Q+ G + AA +A L+++ + + +FY F
Sbjct: 9 IQAILTEHL--HLEGPLLPILHAMQDAFGHIPEAAHRPIAEALNISRAELHGVISFYHDF 66
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R +++C C G L + K+ ++G ++ E V C G C
Sbjct: 67 -RANPAGRHVLKICRAEACQAVGGTALADATLTKLGLDWHGTTANGAVTVEPVYCLGLCA 125
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
AP M+ + R++ ++
Sbjct: 126 CAPAAMLDDRVVGRVDAARMDTLLAE 151
>gi|218244990|ref|YP_002370361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
8801]
gi|218165468|gb|ACK64205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
8801]
Length = 179
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
+ + ++ QP++ F V E+ + Q A+I +L +AQE G++ +E +
Sbjct: 13 KQSLDQKQPNNKRF------KVLEITMK-RNHYRQDALIEILHKAQESFGYLEPDVLEYI 65
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A L + RV +ATFY F L P VC T C ++G +K++ + ++ K
Sbjct: 66 ARGLKLPLSRVYGVATFYHLFSLKP-SGEHSCIVCMGTACYVKGSDKILAALQQELGIKS 124
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
D + C GAC AP V+ + + PE + + A+ +
Sbjct: 125 GETTEDNQVFLTSARCLGACGIAPSVIFDGEVAGKVEPEIAIKKVKAWQQNSSEI 179
>gi|114765414|ref|ZP_01444529.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
gi|114542257|gb|EAU45287.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
Length = 155
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 7/152 (4%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
SE+ ++ + + ++P+L QE G V AA+ ++A L++ V +
Sbjct: 8 SEDLQALIDAQMPL------EGPLLPILHAIQEAYGHVPEAALPLIAETLNLTQAEVHGV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F R V++C C G L + K+ +DG ++ E V
Sbjct: 62 MSFYHDF-RKAPAGRHVVKICRAEACQSMGAGALSDAVLEKLGIGWGGTTADGRVTVEAV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
C G C AP MIG R++ ++
Sbjct: 121 YCLGLCACAPAAMIGDRLIGRADAARIDAELE 152
>gi|163846759|ref|YP_001634803.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222524573|ref|YP_002569044.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
Y-400-fl]
gi|163668048|gb|ABY34414.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222448452|gb|ACM52718.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
Y-400-fl]
Length = 173
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 21 ESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ + + R+ A+I +L +AQE G++S + VA L + RV +A
Sbjct: 19 DNRQKILEATMKRF--QYQGDALIEVLHKAQELYGFLSPELLGEVARRLKLPPSRVYGVA 76
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P G VC T C +RG L+ + ++DG S
Sbjct: 77 TFYHFFSLAPQGE-HSCTVCLGTACYVRGAAILLRELEALSGVQAGRTSADGRFSLLTAR 135
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP V++ + L+ I A
Sbjct: 136 CLGACGIAPAVVLDGEVVGHADRSDLKARIQAL 168
>gi|284050503|ref|ZP_06380713.1| bidirectional hydrogenase complex protein HoxE [Arthrospira
platensis str. Paraca]
gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FACHB341]
gi|291570292|dbj|BAI92564.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
platensis NIES-39]
Length = 179
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ + VA L + +V +ATFY F L P
Sbjct: 37 SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLQLPLSQVYGVATFYHLFSLKP-SGAH 95
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +++ K K DG +S C GAC AP +
Sbjct: 96 TCVVCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155
Query: 155 DTYEDLTPERLEEIIDA 171
TPE +
Sbjct: 156 KVAGQQTPEMAVARLQK 172
>gi|289548716|ref|YP_003473704.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
14484]
gi|289182333|gb|ADC89577.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
14484]
Length = 154
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+E + + + +P R + A++ L Q+ G + A+E VA IL + V +
Sbjct: 4 QELLEKLRQHVQYFP--RREQAILLCLHEVQDYYGHIPNFALEEVAKILHVPLNHVESVV 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FY F + ++VC + C ++L+ + + DG V+
Sbjct: 62 AFYDMFDRGE-PAKHRIRVCVSVVCHFMKKDQLLNALKKHLGIDFWQVTKDGRFKLIPVQ 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP+ MI +DTY+ E+L EI+ +
Sbjct: 121 CLGACSCAPVFMIDEDTYQFEGEEKLHEILSRY 153
>gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit
[Silicibacter lacuscaerulensis ITI-1157]
gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit
[Silicibacter lacuscaerulensis ITI-1157]
Length = 567
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P F++E+ + ++ P R + +I L Q+ G +S I +A + +
Sbjct: 27 PKGRQFTDEAQAEIQRLLGDRP--RRRDLLIEFLHLIQDTHGHISADHIAALAVEMRIGQ 84
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E ATFY F + ++VC + C + G ++L + + +
Sbjct: 85 AEIYETATFYAHFDVVKEGETPPPALTIRVCDSLSCEMAGAQQLKKALEDGLDPSE---- 140
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + + TPE+++ A + G P +
Sbjct: 141 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQA---AIAAGDTHAHLPDYETFA 193
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
GG T L + + ++ ++
Sbjct: 194 TYVEN-GGYTKLKELREGGDWEAVQEQILA 222
>gi|126656035|ref|ZP_01727419.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
CCY0110]
gi|126622315|gb|EAZ93021.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
CCY0110]
Length = 171
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Query: 1 MSVRRLAE---EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
M + L + + Q F ++ + R Q A+I +L +AQE G++
Sbjct: 1 MESKNLTKQPQKSGQTVDKRF-----KIIDITMKR--NHYRQDALIEILHKAQEAFGYLE 53
Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
+E VA+ L + RV +ATFY F L P + VC T C ++G +K++ +
Sbjct: 54 PDILEYVAHALKLPLSRVYGVATFYHLFSLKP-SGKHTCVVCLGTACYVKGSDKVLTALQ 112
Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
++ K +D +S C GAC AP ++ + PE E I
Sbjct: 113 QELGIKSGETTTDKQISLLSARCLGACGIAPAIVFDGEVAGKQMPENALEKIK 165
>gi|239815992|ref|YP_002944902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
paradoxus S110]
gi|239802569|gb|ACS19636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
paradoxus S110]
Length = 154
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ + + + ++P L Q+ G V A+ ++A +++ V + ++
Sbjct: 3 NLGIAASIAAAHKD--RPGGLLPALHGIQDALGHVPPDAVPLIAEQFNLSRAEVHGVVSY 60
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F S R VQVC C G + L+ ++ ++DG S E V C
Sbjct: 61 YHHF-RSAPAGRLLVQVCRAEACKAMGADALLAHAEQRLGCGVHGTSADGQCSLEPVFCL 119
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C ++P + + + + +TP ++I +
Sbjct: 120 GLCASSPAIAVNGEVHARITPALFDDIAREARS 152
>gi|288817440|ref|YP_003431787.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
gi|288786839|dbj|BAI68586.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
gi|308751047|gb|ADO44530.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobacter
thermophilus TK-6]
Length = 154
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E + + +P A++ L Q G + A+E VA ILD+ V +
Sbjct: 4 ESLLEKLKQHAEYFPKREQ--AILLCLHEVQNHYGHIPEFALEEVAKILDLPLNHVENVV 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F R ++VC + C L G +KLI+ R ++ DG V+
Sbjct: 62 SFYDMFDRGE-PARHRIRVCVSVVCHLMGKDKLIKALRELLNIDFGQVTKDGRFKLLAVQ 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C GAC AP M+ +D Y+ E+L E++ ++
Sbjct: 121 CLGACSEAPFFMVDEDAYKFENKEKLNEVLSRYA 154
>gi|148254530|ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1]
gi|146406703|gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1]
Length = 158
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E+I+ + S+ + A +P+L QE G+V AI ++A L+++ V + TFY F
Sbjct: 15 EIIAEH--SKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEVYGVFTFYHDF-R 71
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ R +++C C G + L K+ + +D ++ E + C G C A
Sbjct: 72 AKKAGRHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLEPIYCLGLCATA 131
Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
P M+ L R++ ++
Sbjct: 132 PSAMLDGRLVGRLDEARIDALVSE 155
>gi|315185456|gb|EFU19227.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta thermophila DSM
6578]
Length = 164
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80
++ YPP + ++ +L Q+ ++ +E VA L + + I +
Sbjct: 1 MAHIDRPWKAYPP--RRDNLLLILHDIQDHNPRNYLPDEEVEEVARYLGIPVSELDGIIS 58
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
FY+ F P G R +++C + C L G L + + K DG + E V C
Sbjct: 59 FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117
Query: 141 QGACVNAPMVMIGKDTYEDLT 161
G C P +M+ + + +T
Sbjct: 118 LGCCDKGPSLMVNDELHTRMT 138
>gi|121609342|ref|YP_997149.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
eiseniae EF01-2]
gi|121553982|gb|ABM58131.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
eiseniae EF01-2]
Length = 156
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E + ++ ++P+L Q+ G + A+ ++A L+++ V
Sbjct: 2 LTESQQQIIQTIVDG--KKHLPGGLLPMLHDIQDALGHIPAPALGLIAQELNLSRAEVHG 59
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F+ P G + VQ+C C G +KL E ++++ + +DG ++ E
Sbjct: 60 VVTFYHFFRHEPAGKQ-VVQICRAEACQSMGADKLWEHACSRLNTQGG-TTADGAVTLEP 117
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
V C G C ++P +++ + + + + + ++ A
Sbjct: 118 VYCLGLCSSSPAMVVDEQLHARVDTVKFDRLVAA 151
>gi|118473363|ref|YP_884575.1| formate dehydrogenase, subunit gamma [Mycobacterium smegmatis str.
MC2 155]
gi|118174650|gb|ABK75546.1| formate dehydrogenase, gamma subunit [Mycobacterium smegmatis str.
MC2 155]
Length = 161
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V E+ + + R ++P+L QE+ G V A+ V+A L+++ V + TFY F
Sbjct: 15 VREIAADHRDHR--GPLLPILHAVQERLGCVPAEAVPVLAEELNLSRADVHGVITFYHDF 72
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P R V+VC C G +L+ +++ + DGTL+ E+V C G C
Sbjct: 73 RSEP-AGRTTVRVCRAEACQALGASRLVAHLQDRHGVQLGDATDDGTLTAEQVFCLGNCA 131
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
P + Y L RL +ID+
Sbjct: 132 LGPSAQVDGRLYGRLDEARLSALIDS 157
>gi|39937321|ref|NP_949597.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
gi|192293101|ref|YP_001993706.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
gi|39651179|emb|CAE29702.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
CGA009]
gi|192286850|gb|ACF03231.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris TIE-1]
Length = 162
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + ++A++ L QE EGWVS A ++ A++L + +
Sbjct: 1 MSLSPALKTAIQHAAATH--GGAKAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTPAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q SPVG + +C C L G + + + +K+ DG +
Sbjct: 59 DALATFYSQIFRSPVGDT-VILLCDGLSCYLCGGDAVRDAVMSKLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
+ C G C AP+ ++G + LTP+ L+ +I
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALI 153
>gi|313673508|ref|YP_004051619.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component
subunit hoxe [Calditerrivibrio nitroreducens DSM 19672]
gi|312940264|gb|ADR19456.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
subunit HoxE [Calditerrivibrio nitroreducens DSM 19672]
Length = 164
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ + + ++I +L QE G++ A++ V+ L++ Y R +ATFY
Sbjct: 15 KIIQNTMKK--NGYNPDSLIEVLHAVQEYFGYIDEDALKFVSESLNIPYSRAYSVATFYH 72
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F L P G VC T C ++G +L+ +N DG +S C GA
Sbjct: 73 YFTLKPQGE-HICVVCTGTACYIKGANQLLAHLKNHHDLSDGDTTKDGKVSLLTARCVGA 131
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C AP+V++ ++ E+L+++I
Sbjct: 132 CSLAPVVVVDNKILGEINSEKLDDVIKGCRD 162
>gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E subunit [Nostoc sp. PCC 7422]
Length = 170
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 8/168 (4%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
++ +E F ++ + R+ Q A+I +L +AQE G++ +
Sbjct: 8 KKNTPKEHPSGDKRF-----KILDATMKRH--QYQQDALIEVLHKAQELFGYLENDLLHY 60
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
+A L + RV +ATFY F L+P GT VC T C ++G E L+
Sbjct: 61 IAQSLKLPPSRVYGVATFYHLFSLAPKGT-HTCVVCTGTACYVKGAENLLTTVEKCAKVH 119
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
LS C GAC AP V+ TPE + E I+
Sbjct: 120 VGETTPSSELSLLTARCLGACGIAPAVVFDGTVCGHQTPELVTEQIEK 167
>gi|57234744|ref|YP_181190.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 154
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP+L+ Q + ++SR ++ V+ + + V IATFY+QF+L P G V
Sbjct: 19 KKENLIPILLAFQRKFSYLSRDMMQSVSVYVGVPESSVYNIATFYSQFRLEPPG-IHKVH 77
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C + G E+L+ ++ K D +S + + C G C AP + + Y
Sbjct: 78 VCRGTACHVMGAERLLRNIEKRLGIKAGETTPDNEISLDTINCAGICGLAPTLEVDGKLY 137
Query: 158 EDLTPERLEEII 169
L L I+
Sbjct: 138 TRLDGSSLNRIL 149
>gi|282895631|ref|ZP_06303756.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis
brookii D9]
gi|281199325|gb|EFA74190.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis
brookii D9]
Length = 170
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
Q A+I +L RA E G++ + +A L + RV +ATFY F L+P G
Sbjct: 30 QYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVATFYHLFSLAPKGKHNC 89
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VC T C ++G + ++ I K DG +S C GAC AP V+ +
Sbjct: 90 V-VCTGTACYVKGSQAILTALETFIQIKAGDTTPDGEVSVMTARCLGACGIAPAVVFDGE 148
Query: 156 TYEDLTPERLEE 167
+ T + + +
Sbjct: 149 VLGNQTAQSVCK 160
>gi|296448074|ref|ZP_06889977.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
trichosporium OB3b]
gi|296254431|gb|EFH01555.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
trichosporium OB3b]
Length = 184
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ E+I + + +P+L QE+ G+V AA+ +A L+++ + + +F
Sbjct: 34 NEARAQEIIDAHLGLEGPA--LPILHAIQEEFGYVPEAAVPQIAQSLNISRAEMHGVVSF 91
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ R +++C C G EK+ + ++ + +DG+L+ E V C
Sbjct: 92 YHDFRR-APAGRHVLKLCRAESCQSMGSEKIAKDFLERVKLEWGGTANDGSLTVEAVYCL 150
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C ++P + + + E L+E+
Sbjct: 151 GLCAHSPGALYDNEPIGRVDAEMLDELAAEARN 183
>gi|188584098|ref|YP_001927543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
populi BJ001]
gi|179347596|gb|ACB83008.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
populi BJ001]
Length = 157
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P R HV++
Sbjct: 23 EGATLPILHALQETFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G ++L +++ ++DG ++ E V C G C N P ++ +
Sbjct: 83 CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANGPAALVDDEPLA 141
Query: 159 DLTPERLEEIIDAFST 174
L+ E L+ +
Sbjct: 142 RLSAESLDAALKEARA 157
>gi|86747852|ref|YP_484348.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
HaA2]
gi|86570880|gb|ABD05437.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris HaA2]
Length = 156
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
E+I+ + + + +L QE G V AA +VA L+++ V + TFY
Sbjct: 10 RAAEIIAG--LTHKEGPTLVILHALQEAFGHVPAAAEPMVAQALNLSRAEVHGVLTFYPD 67
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F+ +P G R +++C C G + L ++ +DG ++ E C G C
Sbjct: 68 FRRTPPG-RHVLKLCRAEACQAAGGDALAARAETRLGVTFGATTADGAVTLEPTYCLGLC 126
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
AP M+ + L +L+ ++
Sbjct: 127 ATAPAAMLNERVIGRLDAGKLDALLTE 153
>gi|188997421|ref|YP_001931672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932488|gb|ACD67118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 160
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + E + +I L + +S + ++N L++ ++
Sbjct: 6 LTPEIINKIEEYKKEFLTKEQ--VIIQALHLIYSKSRDISLDHMLELSNYLEVPLNQIER 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I +FY F++ R H++VC PC + GC+KLIE+ ++ + +G E
Sbjct: 64 IVSFYDMFRVKRN-ARHHIRVCKNLPCHIMGCKKLIELFEKLTCEERNQESKNGRFYIET 122
Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
VEC GAC AP MI D Y+ +T E+L EI+ +
Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159
>gi|146341845|ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS278]
gi|146194651|emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp.
ORS278]
Length = 158
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E+I+ + S+ + A +P+L QE G+V AI ++A+ L+++ V + TFY F+
Sbjct: 15 EIIAEH--SQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEVYGVFTFYHDFRG 72
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R +++C C G + L K+ + +D ++ E + C G C A
Sbjct: 73 K-KAGRHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLEPIYCLGLCATA 131
Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
P MI L R++ ++
Sbjct: 132 PSAMIDGRLVGRLDEARIDALVSE 155
>gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus]
Length = 604
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 3/159 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++ R ++ +I +L Q G + + +A+ L+++ + +LE A+FY F
Sbjct: 5 IKAILER--NGSERTRLIDILWDVQHLYGHIPDEVLPQLADELNLSPLDILETASFYHFF 62
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
P + + + T + G + + + + + + G E C G
Sbjct: 63 HRKP-SGKYRIYLSDTVIAKMNGYQAVHDSLERETGARFGGTDKTGMFGLFETPCIGLSD 121
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
P ++I + L P + +II G+ P
Sbjct: 122 QEPAMLIDNVVFTRLRPGTIVDIITQLRQGRSPEDIANP 160
>gi|119489275|ref|ZP_01622082.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
gi|119454749|gb|EAW35894.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
Length = 176
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ + VA L + +V +ATFY F L P R
Sbjct: 37 SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKP-AGRH 95
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C T C +RG +K++ + DG +S C GAC AP+V+
Sbjct: 96 NCVICMGTACYVRGGDKVLAAIEEQTGVHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 155
Query: 155 DTYEDLTPERLEEIIDA 171
T E E I
Sbjct: 156 KMAPQQTAESSVEKIKE 172
>gi|282899669|ref|ZP_06307633.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195548|gb|EFA70481.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 170
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ ++ I R Q A+I +L RA E G++ + +A L + RV +A
Sbjct: 16 EKRLRMLDTAIKR--CQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVA 73
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P G V VC T C ++G ++++ I K DG +S
Sbjct: 74 TFYHLFSLAPKGKHNCV-VCTGTACYVKGAQEILTTLETFIQIKAGDTTPDGEVSLMTAR 132
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
C GAC AP V+ + + T + + +
Sbjct: 133 CLGACGIAPAVVFDSEVLGNQTAQSVCK 160
>gi|77919442|ref|YP_357257.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
2380]
gi|77545525|gb|ABA89087.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
Length = 168
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+++ I P + +I L +AQ G++ E VAN +++ ++V + +FYT
Sbjct: 23 ELDDFIEALPT--KEGHLITALHKAQSLFGYLPEEIQEYVANAMNVPVVQVFGVVSFYTF 80
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F + P G + + VC T C ++G +K+++ +N+++ DG S + + C GAC
Sbjct: 81 FTMIPKG-KHPISVCMGTACFVKGADKVVDAFKNQLNVAVSEVTEDGKFSIDCLRCVGAC 139
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AP+V++G+ Y ++TP+++++II F+
Sbjct: 140 ALAPVVLVGEKVYANVTPDQVKDIIAEFA 168
>gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
HTCC2083]
gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
HTCC2083]
Length = 561
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 18/209 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ V +++ P R +I L Q+ G +S A + +A L ++
Sbjct: 21 PKGRQLEDQAWEDVKVLLASRP--RRSDLLIEFLHLIQDAYGHLSAAHLRALAEELRLSM 78
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E+ATFY F + ++VC + C L G + L +
Sbjct: 79 AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEGSLDASE---- 134
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ +G + TPE++E A + P D
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVEA---AIAANHTHADIPA-YEDF 186
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ AGG TSL + + + +D +
Sbjct: 187 AAYEAAGGYTSLKELRANGDWAQVQDKVL 215
>gi|270307814|ref|YP_003329872.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
VS]
gi|270153706|gb|ACZ61544.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
VS]
Length = 154
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP+L+ Q + ++SR ++ VA + + V IATFY+QF+L P G V
Sbjct: 19 KRENLIPILLAFQRKFSYLSRDMMQSVAVYIGVPESSVYNIATFYSQFRLEPPG-IHKVH 77
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C + G E+L+ ++ K D +S + + C G C AP + + Y
Sbjct: 78 VCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAPTLEVDGKLY 137
Query: 158 EDLTPERLEEII 169
L L I+
Sbjct: 138 TRLDGSSLNRIL 149
>gi|186470174|gb|ACC85637.1| HoxE [Lyngbya majuscula CCAP 1446/4]
Length = 174
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
Q A+I +L +AQE G++ + VA L + +V +ATFY F L P R
Sbjct: 35 SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKP-AGRH 93
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C T C +RG +K++ + DG +S C GAC AP+V+
Sbjct: 94 NCVICLGTACYVRGGDKVLAALEEQTGIHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 153
Query: 155 DTYEDLTPERLEEIIDA 171
T E E I
Sbjct: 154 KMAPQQTAESSVEKIKQ 170
>gi|260427116|ref|ZP_05781095.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
SE45]
gi|260421608|gb|EEX14859.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
SE45]
Length = 155
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S+ +A + +I + ++P+L QE V AA+ ++A L++ V +
Sbjct: 4 SKPTADEIQALIDG--QMHLEGPLLPILHALQEAYDHVPEAALGMIAETLNLTKAEVHGV 61
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F R V++C C G L + K+ SDG ++ E V
Sbjct: 62 MSFYHDF-RKAPAGRHVVKICRAEACQSMGANALSDAVLEKLGIGWGGTTSDGLVTVEAV 120
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
C G C AP M+ RLE+ ++
Sbjct: 121 YCLGLCACAPAAMVDDRLIARADAARLEKALE 152
>gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
Length = 607
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIA 79
+ + VI+ + ++ +L + G + + + +A +D+ +
Sbjct: 3 TVQDIENVIAA--RGNAREHLMAILRDLENLSGRNVLDVSVLNTLAMKMDLPQSAISGFT 60
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FYT F P + ++VC + PC + G + +V N + + +DG EE E
Sbjct: 61 SFYTMFSTEPR-AKFIIRVCKSGPCHVMGARTIFDVIENHLGIRAGETTADGLFHLEECE 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C G C AP +M+ D + +L+ ++EI+D++S +
Sbjct: 120 CLGLCSAAPAMMVNYDMHGNLSESNIKEILDSYSAREP 157
>gi|227499380|ref|ZP_03929491.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
ATCC 35098]
gi|227218584|gb|EEI83824.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
ATCC 35098]
Length = 163
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ AV+P L + Q ++ ++++A L ++ + +ATFY+QF L G + V
Sbjct: 26 KGAVMPALQKCQNLFSYIPEPVVDLMALKLGVSSSEIYGVATFYSQFSLKAKGE-HEICV 84
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTY 157
C T C + G +++++ +K+ + + DG ++ E C G C +P+VMI +
Sbjct: 85 CLGTACYVNGADRILKSLSDKLGVEVGDTSQDGKITLSEARCVGECGKSPVVMIDGDEFR 144
Query: 158 EDLTPERLEEIIDAFST 174
E++ +++II+
Sbjct: 145 ENVELSDIDDIINKLRK 161
>gi|170751377|ref|YP_001757637.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170657899|gb|ACB26954.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 157
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
SA + +I+ + + + A +P+L QE G+V A+ ++A+ L+++ V TF
Sbjct: 8 SAERASGIIAEH--THLEGATLPILHALQETFGYVDSGAVPLIADALNLSRAEVHGCITF 65
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F + R V++C C G +KL ++ +DG+ + E V C
Sbjct: 66 YHDF-RAHPAGRHEVKLCRAEACQAMGSDKLHREILGRLGCGWHETTADGSATVEPVYCL 124
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C N P ++ + LT + LE +
Sbjct: 125 GLCANGPAALVDGEPVAHLTADALEAALTEVRQ 157
>gi|330809408|ref|YP_004353870.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327377516|gb|AEA68866.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 160
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ V++R A++P+L Q G+V +A+ +A+ L+++ V + +FY F
Sbjct: 11 IHSVLAR--EKDTPGALLPILHAIQAGCGYVPDSAVPEIAHALNLSQAEVRGVISFYHDF 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +++C C G E L R ++ ++DG++S V C GACV
Sbjct: 69 RTTP-PARHTLRLCRAESCKSMGAETLAAQLREQLALDDHGTSADGSISLRPVYCLGACV 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
+P + + + + +TPERL ++++
Sbjct: 128 CSPALELDGELHARITPERLRQLVNDC 154
>gi|114566550|ref|YP_753704.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337485|gb|ABI68333.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 148
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+I++Y +I + ++ AI A + ++ IATFY+ F
Sbjct: 5 KEIIAQY--DGKAGGIIEAYHALLREFSYLPEEAIAEAARVFKLSTAEAYGIATFYSMFS 62
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ G + V++C + PC + G ++ ++ K +DG + E EC G C
Sbjct: 63 VEARG-KNVVRICESAPCHVAGAADVVAALERELGIKMGESTADGKFALEFTECVGQCQA 121
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
P++ + Y D++P ++ II +
Sbjct: 122 TPVITVNGKPYLDVSPAQIPAIIAEYK 148
>gi|56751244|ref|YP_171945.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
elongatus PCC 6301]
gi|81299089|ref|YP_399297.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
elongatus PCC 7942]
gi|3947770|emb|CAA73872.1| hoxE [Synechococcus elongatus PCC 6301]
gi|56686203|dbj|BAD79425.1| NADH dehydrogenase I chain E [Synechococcus elongatus PCC 6301]
gi|81167970|gb|ABB56310.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like [Synechococcus
elongatus PCC 7942]
Length = 165
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A+I +L AQ G++ R ++ VA L + +V +A+FY FQL R
Sbjct: 27 QADALIEILHEAQSLYGYLDRELLQWVAEQLALPRSKVYGVASFYHLFQL-NPSGRHRCH 85
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G + +++ ++ + +DG++S V C GAC AP+V+ D
Sbjct: 86 VCLGTACYVKGSQAILDCLIAELGIREGETTNDGSVSLGTVRCVGACGIAPVVVYDGDIQ 145
Query: 158 EDLTPE 163
E
Sbjct: 146 GRQESE 151
>gi|77463675|ref|YP_353179.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
gi|126462507|ref|YP_001043621.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
gi|221639518|ref|YP_002525780.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
gi|77388093|gb|ABA79278.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides 2.4.1]
gi|126104171|gb|ABN76849.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221160299|gb|ACM01279.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides KD131]
Length = 157
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + ++A++ L Q + GWVS + A L + +
Sbjct: 1 MSLSPDLLARIRAASDEH--GGPRAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+A+FY+ PVG R + +C C L G E++ E + ++ +DG +
Sbjct: 59 EALASFYSLIFRHPVG-RTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
V C G C AP ++G+D L+P + +++
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155
>gi|332558531|ref|ZP_08412853.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
gi|332276243|gb|EGJ21558.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
Length = 157
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + ++A++ L Q + GWVS + A L + +
Sbjct: 1 MSLSPDLLARIRAASDEH--GGPRAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+A+FY+ PVG + +C C L G E++ E + ++ +DG +
Sbjct: 59 EALASFYSLIFRHPVGKT-VILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
V C G C AP ++G+D L+P + +++
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155
>gi|37787351|gb|AAP50519.1| Hox1E [Thiocapsa roseopersicina]
Length = 164
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
A+I L Q+ G++ ++ VA+ LD+ +V +ATFY F L P G R
Sbjct: 27 NGYAGHALIETLHSVQDAFGFLDEGSLRFVASSLDLPLSKVYGVATFYHLFALKPKG-RH 85
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G L+E + + P D LS C GAC AP ++I
Sbjct: 86 ACVVCTGTACYIKGAGGLVERLQERYDINPGETTEDDRLSLLTARCVGACGLAPAIVIDG 145
Query: 155 DTYEDLTPERLEEIIDAF 172
D L E L ++
Sbjct: 146 DVLGKLDSESLIAKLEEL 163
>gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Gallionella capsiferriformans ES-2]
gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Gallionella capsiferriformans ES-2]
Length = 626
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
++ ++ + S ++++ +L+ AQE G++ AI+ +++ L + + +A+FY+
Sbjct: 12 LDPILRHH--SHNPNSLLQILIGAQEIHGFIHADAIDYLSSALKLPRAMIEGVASFYSFL 69
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L V + G + L++ +++ +P + DG L C G C
Sbjct: 70 YL-SPHGEYRVLFSDNITDRMAGNQNLMQRLCSQLWVEPGKASEDGLLWVNTTSCTGMCD 128
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
P +++ LT ++++ I +
Sbjct: 129 QGPAMLVNNIAINRLTQDKVDRICELIRE 157
>gi|257066579|ref|YP_003152835.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
prevotii DSM 20548]
gi|256798459|gb|ACV29114.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
prevotii DSM 20548]
Length = 164
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
V+P L + Q ++ ++++A L++ + +ATFY+ F L P G + VC
Sbjct: 27 GCVMPALQKCQNVFSYIPEPVVDLMALKLNVPSSEIYGVATFYSHFSLKPKGE-HDICVC 85
Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYE 158
T C + G +K+++ ++ + DG +S E C G C +AP+VMI +D E
Sbjct: 86 LGTACYVNGSDKILKSLAEELGVEVGDTTEDGKISLSEARCVGECGSAPVVMIDGEDFVE 145
Query: 159 DLTPERLEEIIDAFST 174
+ P ++ II
Sbjct: 146 KVDPSQVHNIIHKVRK 161
>gi|327243023|gb|AEA41130.1| putative bifurcating [FeFe] hydrogenase subunit 1 [Clostridium
butyricum]
Length = 122
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
+I ++ Q++ ++ + +A L ++ ++ +ATFY F L P G + +++C
Sbjct: 1 LIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENFSLKPKG-KYVIKICNG 59
Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
T C +R ++E RN + + D + E V C GAC AP+ + + Y ++
Sbjct: 60 TACHVRKSIPILEEFRNILGLCEEKSTTDDMMFTVETVSCLGACGLAPVCTVNDEVYPNM 119
Query: 161 TPE 163
T
Sbjct: 120 TKA 122
>gi|316935782|ref|YP_004110764.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris DX-1]
gi|315603496|gb|ADU46031.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
palustris DX-1]
Length = 162
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + ++A++ L QE EGWVS A ++ A++L + +
Sbjct: 1 MSLSPALKTAIQHAAATH--GGAKAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTAAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q SPVG + +C C L G + + + K+ DG +
Sbjct: 59 DALATFYSQIFRSPVGDT-VILLCDGLSCYLCGGDAVRDAVMEKLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
+ C G C AP+ ++G + LTP+ L+ +I
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALI 153
>gi|144897649|emb|CAM74513.1| NADH dehydrogenase I chain E [Magnetospirillum gryphiswaldense
MSR-1]
Length = 152
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+A +I + R A++P+L QE+ G+V +AA+ ++A L+++ + + +F
Sbjct: 7 NAERARAIIESHRALR--GALLPMLHALQEEFGYVDQAAVPLLAAALNLSQAEIHGVISF 64
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y +F R V+VC C RG + L+E + K+ SDG + E V C
Sbjct: 65 YHEF-RQSRSGRHVVKVCVAEACQARGSDTLVEHLKAKLGLDLGQTGSDGAFTLEAVYCL 123
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169
G C P ++ L+P RL+ +
Sbjct: 124 GNCALGPSALVDDRLLGRLSPARLDGAL 151
>gi|166362849|ref|YP_001655122.1| bidirectional hydrogenase complex protein HoxE [Microcystis
aeruginosa NIES-843]
gi|166085222|dbj|BAF99929.1| putative bidirectional hydrogenase diaphorase subunit [Microcystis
aeruginosa NIES-843]
Length = 169
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
QSA+I +L +AQE G++ + VA L + RV +ATFY F L P +
Sbjct: 31 AGYNQSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKP-AGKH 89
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+C T C ++G K++E N K +DG +S C GAC AP V+
Sbjct: 90 TCIICMGTACYVKGSGKILEDIENAFDVKVGETTADGEISLVSARCIGACGIAPAVVFDG 149
Query: 155 DTYEDLTPERLEEIIDAF 172
E + + +F
Sbjct: 150 VVAPKQDSETVLAKLQSF 167
>gi|19115849|ref|NP_594937.1| conserved eukaryotic protein [Schizosaccharomyces pombe 972h-]
gi|3183091|sp|O13691|NDUV2_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit homolog
C11E3.12, mitochondrial; Flags: Precursor
gi|2330670|emb|CAB11191.1| conserved eukaryotic protein [Schizosaccharomyces pombe]
Length = 162
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
P F F E+ +++RYP +A++PLL AQ Q G W+ A+ +A++ ++
Sbjct: 3 PIRF-FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVS 61
Query: 72 YIRVLEIATFY-TQFQLSPVGTRAHVQVCGTTPCMLR---GCEKLIEVCRNKIHQKPLHR 127
V + Y F P V++C + C + + K
Sbjct: 62 IDYVHSLILAYPNDFFWRPKKP--RVRICNSWMCQQAAEEQGNSNWDSQCRSVATKYG-- 117
Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
E C G C P + I Y T E+L +I++A + +
Sbjct: 118 -----FDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALTQKKN 162
>gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
CG']
Length = 634
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
AV+PLL E++ ++S + + ++ + ++ +L I TFY F + + V+VC
Sbjct: 36 AVLPLLHYYMEKKNYISESDVSKISQLTGLSVSDILGIGTFYQHF-VFHPTGKNSVRVCL 94
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
TTPC+ RG +K E + DG + +C G C AP I D Y
Sbjct: 95 TTPCLFRGGKKTFETLSKTLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYVGT 154
Query: 161 TPERLEEIIDAFSTGQ 176
+PE + I++ + G+
Sbjct: 155 SPEEIPSILEEYRKGK 170
>gi|73748288|ref|YP_307527.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|147669068|ref|YP_001213886.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
sp. BAV1]
gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
gi|146270016|gb|ABQ17008.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
Length = 154
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L P G V
Sbjct: 19 KKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPG-IHRVH 77
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C + G E+L+ ++ K D +S + + C G C AP + + Y
Sbjct: 78 VCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAPTLEVDGKLY 137
Query: 158 EDLTPERLEEII 169
L L I+
Sbjct: 138 TRLNGSSLNRIL 149
>gi|159027691|emb|CAO89556.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 169
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
QSA+I +L +AQE G++ + VA L + RV +ATFY F L P +
Sbjct: 31 AGYNQSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKP-AGKH 89
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G K++E N K +DG +S C GAC AP V+
Sbjct: 90 TCIVCMGTACYVKGSGKILEDIENSFDVKVGETTADGEISLVSARCIGACGIAPAVVFDG 149
Query: 155 DTYEDLTPERLEEIIDAF 172
E + + +F
Sbjct: 150 VVAPKQDSETVLAKLKSF 167
>gi|149203816|ref|ZP_01880785.1| ATP synthase subunit E [Roseovarius sp. TM1035]
gi|149142933|gb|EDM30975.1| ATP synthase subunit E [Roseovarius sp. TM1035]
Length = 154
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ +++ + + ++P+L Q G++ AA +A L+++ + + +FY F
Sbjct: 9 ITSILAAHRDL--EGPLLPILHAMQAAFGYIPEAAHRPIAEALNISRAELHGVISFYHDF 66
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R +++C C G L E K+ ++G ++ E V C G C
Sbjct: 67 -RANPAGRHVLKICRAEACQAVGGAVLAEATLAKLGLAWHGTTANGAVTVEPVYCLGLCA 125
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
AP M+ + R++ ++
Sbjct: 126 CAPAAMLDDRVVGRVDAARIDALLAE 151
>gi|326567653|gb|EGE17761.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 12P80B1]
Length = 169
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG
Sbjct: 32 YPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEGVATFFNRIYRLPVG- 88
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + VC + C L G E L+ + ++ + +DG + + C G C V+I
Sbjct: 89 RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DTY + P + +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168
>gi|325294616|ref|YP_004281130.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065064|gb|ADY73071.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 167
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
VI +L QE+ ++S+ A+E V+ L++ ++ IATFY+ F L PVG + + VC
Sbjct: 22 GKVISILEDIQEKNKYLSKEALEYVSEKLNIPLSQLYSIATFYSFFNLKPVG-KHIISVC 80
Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL---------SWEEVECQGACVNAPMV 150
TPC ++G +LI+ + K + D S C G C AP++
Sbjct: 81 TGTPCHVKGAPQLIKTLERLLGIKQDEVSEDSKFFLTTHDRSFSLTAARCFGCCSMAPVI 140
Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
I Y +T L +I+ +
Sbjct: 141 RIDDKIYGYVTVNDLPKILKEY 162
>gi|289432337|ref|YP_003462210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
gi|288946057|gb|ADC73754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
GT]
Length = 154
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L P G V
Sbjct: 19 KKENLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPG-IHRVH 77
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C + G E+L+ ++ K D +S + + C G C AP + + Y
Sbjct: 78 VCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLY 137
Query: 158 EDLTPERLEEII 169
L L I+
Sbjct: 138 TRLNGSSLNRIL 149
>gi|86748475|ref|YP_484971.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
gi|86571503|gb|ABD06060.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris HaA2]
Length = 157
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + + ++A++ L QE EGWVS A ++ A L + +
Sbjct: 1 MSLSPAIRTAIAQAAAHH--GGPKAAMLEALKLVQEAEGWVSDAHLKEAAEALGVTTAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q SPVG + +C C L G + + + +++ DG +
Sbjct: 59 DSLATFYSQIFRSPVGDT-VILLCDGLSCFLCGGDAVRDAVMSRLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
+ C G C AP+ ++G + LT + L+ +I
Sbjct: 118 INICCVGGCDLAPVALVGPERKLVGPLTADDLDALI 153
>gi|29375955|ref|NP_815109.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
[Enterococcus faecalis V583]
gi|227518654|ref|ZP_03948703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis TX0104]
gi|227553184|ref|ZP_03983233.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis HH22]
gi|229545927|ref|ZP_04434652.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis TX1322]
gi|229550121|ref|ZP_04438846.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis ATCC 29200]
gi|255972898|ref|ZP_05423484.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T1]
gi|255975953|ref|ZP_05426539.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T2]
gi|256618968|ref|ZP_05475814.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
gi|256762395|ref|ZP_05502975.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T3]
gi|256853025|ref|ZP_05558395.1| predicted protein [Enterococcus faecalis T8]
gi|256958879|ref|ZP_05563050.1| NADH dehydrogenase [Enterococcus faecalis DS5]
gi|256962027|ref|ZP_05566198.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
gi|256965225|ref|ZP_05569396.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
gi|257082643|ref|ZP_05577004.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
gi|257085352|ref|ZP_05579713.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
gi|257086847|ref|ZP_05581208.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
gi|257089782|ref|ZP_05584143.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis CH188]
gi|257415998|ref|ZP_05592992.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis AR01/DG]
gi|257419200|ref|ZP_05596194.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis T11]
gi|257422722|ref|ZP_05599712.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis X98]
gi|293383049|ref|ZP_06628967.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis R712]
gi|293388210|ref|ZP_06632731.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis S613]
gi|294779581|ref|ZP_06744975.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
faecalis PC1.1]
gi|307271122|ref|ZP_07552405.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX4248]
gi|307273328|ref|ZP_07554573.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0855]
gi|307277474|ref|ZP_07558566.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX2134]
gi|307279195|ref|ZP_07560253.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0860]
gi|307288116|ref|ZP_07568126.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0109]
gi|307291375|ref|ZP_07571259.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0411]
gi|312900654|ref|ZP_07759951.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0470]
gi|312904132|ref|ZP_07763300.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0635]
gi|312907362|ref|ZP_07766353.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
DAPTO 512]
gi|312909978|ref|ZP_07768826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
faecalis DAPTO 516]
gi|312952392|ref|ZP_07771267.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0102]
gi|29343417|gb|AAO81179.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
[Enterococcus faecalis V583]
gi|227073911|gb|EEI11874.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis TX0104]
gi|227177710|gb|EEI58682.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis HH22]
gi|229304707|gb|EEN70703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis ATCC 29200]
gi|229308995|gb|EEN74982.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis TX1322]
gi|255963916|gb|EET96392.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T1]
gi|255968825|gb|EET99447.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T2]
gi|256598495|gb|EEU17671.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
gi|256683646|gb|EEU23341.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
T3]
gi|256711484|gb|EEU26522.1| predicted protein [Enterococcus faecalis T8]
gi|256949375|gb|EEU66007.1| NADH dehydrogenase [Enterococcus faecalis DS5]
gi|256952523|gb|EEU69155.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
gi|256955721|gb|EEU72353.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
gi|256990673|gb|EEU77975.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
gi|256993382|gb|EEU80684.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
gi|256994877|gb|EEU82179.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
gi|256998594|gb|EEU85114.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis CH188]
gi|257157826|gb|EEU87786.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ARO1/DG]
gi|257161028|gb|EEU90988.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis T11]
gi|257164546|gb|EEU94506.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
faecalis X98]
gi|291079714|gb|EFE17078.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis R712]
gi|291082394|gb|EFE19357.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis S613]
gi|294453371|gb|EFG21779.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
faecalis PC1.1]
gi|306497606|gb|EFM67139.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0411]
gi|306500852|gb|EFM70170.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0109]
gi|306504320|gb|EFM73532.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0860]
gi|306505739|gb|EFM74917.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX2134]
gi|306509855|gb|EFM78880.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0855]
gi|306512620|gb|EFM81269.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX4248]
gi|310626390|gb|EFQ09673.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
DAPTO 512]
gi|310629776|gb|EFQ13059.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0102]
gi|310632608|gb|EFQ15891.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0635]
gi|311289936|gb|EFQ68492.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
faecalis DAPTO 516]
gi|311292135|gb|EFQ70691.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0470]
gi|315027370|gb|EFT39302.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX2137]
gi|315029990|gb|EFT41922.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX4000]
gi|315033791|gb|EFT45723.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0017]
gi|315036876|gb|EFT48808.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0027]
gi|315147885|gb|EFT91901.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX4244]
gi|315150638|gb|EFT94654.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0012]
gi|315153355|gb|EFT97371.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0031]
gi|315155868|gb|EFT99884.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0043]
gi|315157965|gb|EFU01982.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0312]
gi|315164268|gb|EFU08285.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX1302]
gi|315166638|gb|EFU10655.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX1341]
gi|315170078|gb|EFU14095.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX1342]
gi|315174469|gb|EFU18486.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX1346]
gi|315575556|gb|EFU87747.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0309B]
gi|315578477|gb|EFU90668.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0630]
gi|315580002|gb|EFU92193.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX0309A]
gi|327535029|gb|AEA93863.1| putative NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
faecalis OG1RF]
gi|329571420|gb|EGG53107.1| Respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
TX1467]
Length = 162
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIA 79
S I +I + ++ +L+ Q +EG++ + ++VA L + RV EI
Sbjct: 5 SLIEKEAIILENDADPQR--ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY + P + +++C +TPC G + EV + DG + +
Sbjct: 63 SFYAILKTEP-QAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIP 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
C GAC P++ I + LT E++ ++I
Sbjct: 122 CIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQND 157
>gi|325971422|ref|YP_004247613.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
Buddy]
gi|324026660|gb|ADY13419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
Buddy]
Length = 164
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ +++ + R A++ +L Q + ++S+ + +VA +++ V +ATFY
Sbjct: 8 IEAIVASHRTER--GALLSILEAVQRTNEHNYLSKEELILVAKAMEVPLSTVYSVATFYA 65
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----RNSDGTLSWEEVE 139
F L P G + VC T C RG + L++ +++ + D + V
Sbjct: 66 FFNLKPQGE-HVITVCRGTACHTRGSKPLLQQVLKQLNLELDEEGTATTDDVRFTVHTVA 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
C G C AP++ I + +T ++L +++ +
Sbjct: 125 CFGQCALAPVIAIDSVIHSRVTEQKLTQLLQTLIQSK 161
>gi|116750138|ref|YP_846825.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699202|gb|ABK18390.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 190
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 3/149 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++ V+ R Q A+I +L AQE G+++ + A L + + V +ATFY
Sbjct: 22 YKGIDRVLKR--QQYQQDALIEVLTSAQEAFGYLTEDVLIYTARQLKLPFSWVYGVATFY 79
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F L P G VC T C + +++E + + K DG L+ C G
Sbjct: 80 HFFSLKPQGE-HSCIVCLGTACYVGKSNEIVEALEKEFNVKAGQTTEDGKLTVTTTRCLG 138
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C AP+ ++ PE + A
Sbjct: 139 CCGLAPVAVLDNQVLGKELPETTIAKVKA 167
>gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 608
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
R ++ +L AQE G++ AA+ ++A + + RV +A FY+ L+PVG R V
Sbjct: 19 RDPGELVQILREAQEALGYLPAAALTLIARAVGVPRARVEGVAGFYSFLHLAPVG-RYRV 77
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
+ G L++ NK+ + + DG +S + C G C P +++
Sbjct: 78 LFSDNITDRMLGSGDLLDRLCNKLWIERGKLSEDGLVSVDTTSCTGMCDQGPALLVNGRA 137
Query: 157 YEDLTPERLEEIIDAFST 174
++ ER++ + +
Sbjct: 138 MTRMSAERIDRLCELIRA 155
>gi|301060420|ref|ZP_07201279.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
gi|300445474|gb|EFK09380.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
Length = 155
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++ Y +S +IP+L AQ GW+ ++++A+ L + V +A+FY
Sbjct: 7 EAALKNILVFY--EGKRSELIPILQEAQGIHGWLPGKTMQLIADFLHINEGEVHSVASFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF+L P+G + V VC T C +RG +++E + K + D + E V C G
Sbjct: 65 NQFRLMPLGRK-MVTVCRGTACHIRGAPQILEDIGQSLRLKEGETSPDLEYTLESVACIG 123
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V + + ++T ER +
Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKL 153
>gi|219849355|ref|YP_002463788.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
aggregans DSM 9485]
gi|219543614|gb|ACL25352.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
aggregans DSM 9485]
Length = 173
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Query: 21 ESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ + + R+ +A+I +L +AQE G++S + +A L + RV +A
Sbjct: 19 DNRRKILEATMKRF--QYQGNALIEVLHKAQELYGFLSPELLSEIAQRLHLPPSRVYGVA 76
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F L+P G R VC T C +RG L+ K H + DG LS
Sbjct: 77 TFYHFFSLAPQG-RHSCTVCLGTACYVRGAAILLRELETLSGIKAGHTSPDGQLSLLTAR 135
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C GAC AP V++ + L I +
Sbjct: 136 CLGACGIAPAVVLDGEVIGHADRSDLTTRIRSL 168
>gi|301062487|ref|ZP_07203133.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
gi|300443417|gb|EFK07536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
proteobacterium NaphS2]
Length = 155
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++ Y +S +IP+L AQ GW+ R ++++A+ L + V +A+FY
Sbjct: 7 EAALKNILVFY--EGKRSELIPILQEAQGINGWLPREVMQLIADFLHINEGEVHSVASFY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
QF+L P+G + V VC T C +RG +++ + K + D + E V C G
Sbjct: 65 NQFRLMPLGRK-MVTVCRGTACHIRGAPQILVDIGQSLRLKEGETSPDLEYTLESVACIG 123
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP+V + + ++T ER +
Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKL 153
>gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Delftia acidovorans SPH-1]
gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia
acidovorans SPH-1]
Length = 727
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V I+ + +R +I LL Q+ G + AA+ +A+ L+++ V + ++
Sbjct: 27 EREAVEHAIAVH--ARRPGPLIELLHAVQDMLGHIPEAAVPRIADALNLSRAEVHGVISY 84
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------KPLHRNSDGTLSW 135
Y F S R +QVC C RG + L+ + ++DG ++
Sbjct: 85 YPHF-RSTPAGRHVLQVCRAEACQSRGADALLAHAGQALGCGSSGHGHEHGTSADGAVTL 143
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
E V C G C ++P VM+ + ++ L+ +I
Sbjct: 144 EPVYCLGLCASSPAVMLDGQPHAHVSANGLDALIAQCRQ 182
>gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Rhodoferax ferrireducens T118]
gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
[Rhodoferax ferrireducens T118]
Length = 603
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
+ +++RYPP A++ +L Q +GW++ A+ VA+ L + +V +A FY
Sbjct: 14 ELQRLLARYPPD--PHALLQILRELQALQGWLAPDALGQVASELGLTLAQVQGVAGFYRF 71
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
PVG V L G E L+ ++ P + DG +S E C G C
Sbjct: 72 LHTRPVGA-YRVLFSDNVTDRLLGSEALLADLCQRLGVVPGQLSFDGLVSVERTSCTGLC 130
Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRP 182
P ++I L P R+ + + + +
Sbjct: 131 DQGPALLINHHQVLTRLDPARVAHMAELIRA-RVPVPQW 168
>gi|296127183|ref|YP_003634435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
murdochii DSM 12563]
gi|296018999|gb|ADG72236.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
murdochii DSM 12563]
Length = 163
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 18 FSEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+EES + ++ ++ + + +I + Q+ G+V R + V+ +++ R+
Sbjct: 8 LTEESIADEIKALVEKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEQINIPLARIY 65
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSW 135
EI TFY F + P + VC T C L+G +L+E + K++ K + +D
Sbjct: 66 EILTFYNYFTMEPPAENN-IAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKL 124
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
EEV C G C AP++ D + + + + I+
Sbjct: 125 EEVRCIGCCGLAPVITFNGDVSGRVVVDDISKFIED 160
>gi|146277731|ref|YP_001167890.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
gi|145555972|gb|ABP70585.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
sphaeroides ATCC 17025]
Length = 157
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + ++A++ L Q + GWVS + A+ L + +
Sbjct: 1 MSLSPDLLARIRAASDEH--GGPRAAMLEALKLIQHEHGWVSDGHLAEAASALGVHRAEM 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+A+FY+ PVG + +C C L G E++ E + ++ DG +
Sbjct: 59 EALASFYSLIFRHPVGKT-VILLCDGASCWLNGAEEVREELKRRLGIGFGETTRDGRYTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
V C G C AP ++G+D L+P + +++
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRRLVGPLSPAGVAALLEE 155
>gi|296112935|ref|YP_003626873.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
gi|295920629|gb|ADG60980.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
gi|326569468|gb|EGE19528.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC8]
gi|326577452|gb|EGE27336.1| NADH dehydrogenase subunit E [Moraxella catarrhalis O35E]
Length = 169
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG
Sbjct: 32 YPQAR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + VC + C L G E L+ + ++ + +DG + + C G C V+I
Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DTY + P + +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168
>gi|115526638|ref|YP_783549.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
BisA53]
gi|115520585|gb|ABJ08569.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisA53]
Length = 160
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 3/159 (1%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + A E+I+ + A + +L QE G+V + AI ++A L+++
Sbjct: 2 PIAVVYEPWDAERAAEIIAE--LKSHEGATLVILHAMQEAFGYVPQDAIPMIALALNLSR 59
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
V + TFY F R +++C C G + L + +DG
Sbjct: 60 AEVHGVFTFYHDF-RKAPAGRHVLKLCHAEACQAAGGDALAARAEKTLGISVGDTRADGV 118
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+S E + C G C AP M+ LT L+ ++
Sbjct: 119 VSLEPIYCLGLCATAPSAMLDGRLIGRLTEAGLDALLAE 157
>gi|90426118|ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
BisB18]
gi|90108132|gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 158
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
++ E A + + + + A + +L QE G+V + AI ++A L+++ V
Sbjct: 7 AWDSERAAEIIAELKSH-----EGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEVH 61
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY F R +++C C G + L + DG +S E
Sbjct: 62 GVFTFYHDF-RKVPAGRHVLKLCLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLE 120
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
V C G C AP M+ L RL+ ++
Sbjct: 121 PVYCLGLCATAPSAMLDGRLIGRLDATRLDALLAE 155
>gi|84499615|ref|ZP_00997903.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
gi|84392759|gb|EAQ04970.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
Length = 162
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 3/146 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ VI + A++P+L QE G + A ++ L + + + +FY F
Sbjct: 12 IQAVID--TERHREGALLPILHALQEAYGHIPEGAYPLLTATLGITRAELHGVVSFYHDF 69
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
R V+VC C G + ++ DG ++ E V C G C
Sbjct: 70 -RDVPAGRHVVKVCRAEACQSVGANAMAATLLDRFGLDWHGTTPDGRVTIEPVYCLGLCA 128
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
P M+ P +L +
Sbjct: 129 CGPAAMVDGKLIGRADPAKLAAALSE 154
>gi|308272724|emb|CBX29328.1| hypothetical protein N47_J03090 [uncultured Desulfobacterium sp.]
Length = 168
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EES + E + Y S ++ +IP+L AQ G++ AI+++A+ + + V +A
Sbjct: 13 EESGGALKETLEFY--SGKRNELIPILQEAQGIYGYLPEDAIKIIADFIKITIGEVYSVA 70
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY QF+L P+G R V +C T C +RG ++++ ++ K + D + E V
Sbjct: 71 SFYNQFRLIPLG-RNTVTICRGTACHIRGAPQIVDEIGKVLNLKEGETSEDMEYTLETVA 129
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEI 168
C G C AP V I + L P + + +
Sbjct: 130 CIGCCALAPCVKINHKIHGCLEPGQAKGL 158
>gi|217979754|ref|YP_002363901.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
silvestris BL2]
gi|217505130|gb|ACK52539.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
silvestris BL2]
Length = 161
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+A E+I + + ++P+L QE+ G+V+ A+ ++A L+++ V + +F
Sbjct: 12 NAERAAEIIHEHLGL--EGPMLPILHALQEEFGYVNGDAVPMIAKALNLSRAEVHGVTSF 69
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F R +++C C G E+L + + +DG L+ E + C
Sbjct: 70 YHDF-RHEPAGRHVLKLCRGESCQSMGSEELARKFLTGLGIEWGGTTADGDLTVEAIYCL 128
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G C +P M+ + L E L E ++ S
Sbjct: 129 GLCACSPAAMLDDELIGALDEETLAEAVNTVSA 161
>gi|326565197|gb|EGE15384.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 103P14B1]
gi|326574010|gb|EGE23959.1| NADH dehydrogenase subunit E [Moraxella catarrhalis CO72]
Length = 169
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP + ++AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG
Sbjct: 32 YP--QPRAAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + VC + C L G E L+ + ++ + +DG + + C G C V+I
Sbjct: 89 RHVILVCDSIACYLTGYEMLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DTY + P + +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168
>gi|326561159|gb|EGE11524.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 7169]
Length = 169
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP + ++AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG
Sbjct: 32 YP--QPRAAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + VC + C L G E L+ + ++ + +DG + + C G C V+I
Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DTY + P + +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168
>gi|302344256|ref|YP_003808785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
baarsii DSM 2075]
gi|301640869|gb|ADK86191.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
baarsii DSM 2075]
Length = 170
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+ +I +L ++ ++ A+ ++ L ++ + EI TFY+ F L P G R
Sbjct: 32 SGGDKENLIMILQAISKRYNYLPLPALRYLSAKLGVSMSGIYEIVTFYSMFCLEPRG-RN 90
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC T C +RG E++ + + + K +D + E V C G C P+V+I +
Sbjct: 91 IISVCLGTACHVRGAERIKQSVEDYLGIKAGETTADFKFTLETVRCIGCCSLGPVVVIDE 150
Query: 155 DTYEDLTPERLEEIIDAFST 174
+ +T +++ + +
Sbjct: 151 KYHGGMTSDKMLNTLKEMAN 170
>gi|91975105|ref|YP_567764.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
BisB5]
gi|91681561|gb|ABE37863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisB5]
Length = 156
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
E+I+ + + + +L QE G+V AA +VA L+++ + + TFY
Sbjct: 10 RAAEIIAG--LTHKEGPTLVILHALQEAFGYVPEAAEPMVAQALNLSRAEIHGVVTFYPD 67
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
F+ P G R +++C C G + L ++ ++DG +S E V C G C
Sbjct: 68 FRREPPG-RHVLKLCRAEACQAAGGDALAAQAETRLGVTFGATSADGAVSLEPVYCLGLC 126
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
AP M+ L RL+ ++
Sbjct: 127 ATAPSAMLDDRVIGRLDTHRLDALMTE 153
>gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
114]
gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
114]
Length = 560
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + + V +I P R +I L Q+ G +S + +A ++ ++
Sbjct: 20 PKGRQYDDVALEEVQALIGSRPLDR--DLLIEFLHLIQDAYGHLSARHLRALAEVMRLSM 77
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E+ATFY F + ++VC + C L G ++L + +
Sbjct: 78 AEVYEVATFYAHFDVVKENETPPPALTIRVCDSLSCELAGAQQLKAALEDGLDPTE---- 133
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ +G + TPE++ A + P
Sbjct: 134 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVRA---AIAANHTHADIP-DYETF 185
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
GG T+L D + +D ++
Sbjct: 186 AKYQAEGGYTALQDLRENGDWEAVQDKVLA 215
>gi|212696953|ref|ZP_03305081.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
7454]
gi|212676041|gb|EEB35648.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
7454]
Length = 167
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ AV+P+L + Q ++ ++++A L ++ + +ATFY+QF L P G +
Sbjct: 25 KKGAVMPVLQKCQNLFSYIPEPIVDLMALKLGVSSSEIYGVATFYSQFSLKPKGE-HEIC 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT- 156
VC T C ++G +K+++ +++ + DG +S E C G C AP+V I +
Sbjct: 84 VCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLD 143
Query: 157 YEDLTPERLEEIIDAFSTGQ 176
+L+ + +II +
Sbjct: 144 IGNLSSADVHKII--LKAKE 161
>gi|91975809|ref|YP_568468.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
gi|91682265|gb|ABE38567.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisB5]
Length = 157
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
S S + + + + ++A++ L QE EGWVS A ++ A L + +
Sbjct: 1 MSLSPAIKTAIAQAAANH--GGPKAAMVEALKLVQEAEGWVSDAHLKEAAQALGVTTAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+Q PVG + +C C L G + + + +++ DG +
Sbjct: 59 ESLATFYSQIFRRPVGDT-VILLCDGLSCYLCGGDAVRDAIMSRLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
+ C G C AP+ ++G + LT + L+ +I
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTADDLDALI 153
>gi|114705204|ref|ZP_01438112.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
HTCC2506]
gi|114539989|gb|EAU43109.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
HTCC2506]
Length = 157
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F E+ ++ Y + ++P+L + G++ A+ ++A L++ V
Sbjct: 6 EFDEDD---AIALVEEY--KHLEGPLLPILHAFSHRYGYIGDEAVRLIAGELNLTRAEVY 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY F+ P R ++VC C G + + + + K ++DG ++ E
Sbjct: 61 GVVSFYHDFKREP-HGRHVLKVCRAEACQAAGGDAIADSLEKALGIKFGETSADGAVTLE 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
V C G C AP M+ L R +++
Sbjct: 120 AVYCLGLCATAPSAMLDDRIIGRLNQPRAKKL 151
>gi|326572770|gb|EGE22756.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC7]
Length = 169
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
YP + ++AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG
Sbjct: 32 YP--QPRAAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R + VC + C L G E L+ + ++ + +DG + + C G C V+I
Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+DTY + P + +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168
>gi|260886838|ref|ZP_05898101.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
35185]
gi|330839359|ref|YP_004413939.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
sputigena ATCC 35185]
gi|260863437|gb|EEX77937.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
35185]
gi|329747123|gb|AEC00480.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
sputigena ATCC 35185]
Length = 163
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDM 70
P S + ++ V+ + S + ++ +L+ Q+ + +V A VA L +
Sbjct: 5 PKSLEL--ATREKIDRVLEAH--SYDPTQIVGILLDVQDLFERHYVPEPAAYYVAEKLPL 60
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
+ + TFY P + +QVC + C + E L ++ + D
Sbjct: 61 KISLIYDCLTFYASLSPVPR-AKYPIQVCDSVVCRINENETLFSALKSLLGIDVGEVTYD 119
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLT-PERLEEIIDAFS 173
G + E+ C GAC AP V + + Y L E++EE++
Sbjct: 120 GRFTLEKTPCFGACDIAPAVRVNGEVYGHLDSREKIEELLHTLQ 163
>gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.]
Length = 561
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R+ + Q ++S V +++ + P R + +I L Q+ G +S A + +
Sbjct: 18 RVRPKGRQLDDLAWS-----QVQDLLGQRP--RRRDLLIEFLHLIQDAYGHLSAAHLRAL 70
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + ++ V E+ATFY F + V+VC + C L G +L E + +
Sbjct: 71 AEEMRLSQAEVYEVATFYAHFDVVKEGETPPPALTVRVCDSLSCELAGAAQLQEALQQGL 130
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
K ++ C G C AP++ +G + TPE++ + A S G
Sbjct: 131 DPK--------SVRVVRAPCMGRCDTAPVLELGHHHIDHATPEKV---LAAISAGHTHAE 179
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
P D + AGG L + + ++ +
Sbjct: 180 SP-DYEDLAAYRSAGGYARLEELRAGGDWQEVQA 212
>gi|325845920|ref|ZP_08169118.1| putative bidirectional hydrogenase complex protein HoxE
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481826|gb|EGC84858.1| putative bidirectional hydrogenase complex protein HoxE
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 167
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ AV+P+L + Q ++ ++++A L ++ + +ATFY+QF L P G +
Sbjct: 25 KKGAVMPVLQKCQNLFSYIPEPIVDLMALNLGVSSSEIYGVATFYSQFSLKPKGE-HEIC 83
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT- 156
VC T C ++G +K+++ +++ + DG +S E C G C AP+V I +
Sbjct: 84 VCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLD 143
Query: 157 YEDLTPERLEEIIDAFSTGQ 176
+L+ + +II +
Sbjct: 144 IGNLSSADVHKII--LKAKE 161
>gi|189499446|ref|YP_001958916.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
phaeobacteroides BS1]
gi|189494887|gb|ACE03435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
phaeobacteroides BS1]
Length = 195
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V + I+ + SA +PLL Q + G++ R A++++ D+ ++ +ATFY+QF
Sbjct: 15 VQKWIAE--TGKSVSAAVPLLQAVQNEYGYLPREAMDIIVAETDVGASQLYGVATFYSQF 72
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGA 143
+L PVG R ++VC T C + G +++ R + K S+G+ + E+V C G
Sbjct: 73 RLDPVG-RHVIKVCHGTACHVSGADRINTALRQSLGIKNEDEDTASNGSYTVEDVACIGC 131
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C AP+++IG +T+ +L + + + QG+
Sbjct: 132 CSLAPVMVIGDETFGNLKGTDAQRSLKKHARQQGE 166
>gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Nitrosospira multiformis ATCC 25196]
Length = 598
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 4/160 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ + + R+ ++ +L+ QE ++ AI +A L++ + V A
Sbjct: 8 PDIEQQIAIICQRH--GCEPHRLLQILIDVQEMYCFIPPEAITFIARHLNLPRVNVEGAA 65
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
FY+ L P R V + G E+L+ N++ +P + DG +S
Sbjct: 66 GFYSFLSLEP-AGRYRVLFSDNVTDRMLGNEELMRHFCNRLWLEPGKVSEDGLISTNFTS 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
C G C P +I L+ ER++ +I +
Sbjct: 125 CTGMCDQGPTALINGWPVTRLSKERID-LIADLILSKSPV 163
>gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Dinoroseobacter shibae DFL 12]
gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Dinoroseobacter shibae DFL 12]
Length = 565
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 18/206 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P ++++ + EV+ P R + +I L Q++ G +S A + +A + ++
Sbjct: 25 PKGRQVTDQAWAELREVLGDRP--RRRDLLIEFLHLIQDRYGHLSAAHLRALAEEMRLSQ 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E+A+FY F + ++VC + C L G + L + +
Sbjct: 83 AEVYEVASFYAHFDVVKEGESPPPALTIRVCDSLSCELAGAQALKSALEDGLDP------ 136
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
G + C G C AP++ +G + + TPE++++ I
Sbjct: 137 --GQVRVLRAPCMGRCATAPVLELGHNHIDHATPEKVQQAI----AANHTHPTIPDYETL 190
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKD 214
+ GG L D + + +
Sbjct: 191 AAYRAEGGYGVLRDLRASGDWEVVQA 216
>gi|167586516|ref|ZP_02378904.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ubonensis Bu]
Length = 158
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ +++R+ +++ +L Q++ G+V + +A L+++ V + T+Y F+
Sbjct: 9 DALVARHAHGGR--SLVAVLHAIQDEAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P R +Q+C C GCE L + + ++ G ++ E V C G C
Sbjct: 67 TEP-PARVTIQMCRAEACRSMGCEALAAHAQARTGCTFDASHA-GAVALESVYCLGLCAQ 124
Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171
+P + + + +TPE+ + ++
Sbjct: 125 SPSMTVNGVLHARVTPEKFDALLAD 149
>gi|294678553|ref|YP_003579168.1| NAD-dependent formate dehydrogenase subunit gamma [Rhodobacter
capsulatus SB 1003]
gi|294477373|gb|ADE86761.1| NAD-dependent formate dehydrogenase, gamma subunit [Rhodobacter
capsulatus SB 1003]
Length = 150
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 5/149 (3%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ +++ + + A++P+L Q G++ A +A L + V + FY
Sbjct: 5 ARLRAILAAH--RGREGALLPILHDVQAAFGFIPEDAYAPIAADLGLTRAEVAGVVGFYH 62
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F R +++C C G + + + + + + ++ E V C G
Sbjct: 63 DF-RKAPAGRHVIKLCRAEACQAMGMDAVQARLESALGLRLGDSSE--AVTLEAVYCLGL 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP M+ L + I+
Sbjct: 120 CACAPAAMVDDRLVGRLDAAAVAGIVAEL 148
>gi|298528243|ref|ZP_07015647.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511895|gb|EFI35797.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 153
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+++VI Y + + + LL +E G+V + +++ L++ R IATF++Q
Sbjct: 5 LDKVIENYHEN--EGNALTLLQDLEENFGYVPEETVYELSDRLNIPPSRFFGIATFFSQL 62
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGAC 144
L P G + + VC TPC ++G EK++ R ++ + D + EEV C GAC
Sbjct: 63 HLKPRG-KNIITVCRGTPCHVKGSEKILSRMRMELDIPSGEETSEDRMFTVEEVNCVGAC 121
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
AP+V+I + ++ +++ + ++ +
Sbjct: 122 GMAPVVVINQQVQGEVNIKKMMKEVNELRAEE 153
>gi|218514552|ref|ZP_03511392.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
8C-3]
Length = 115
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ E +RYP +SA++P L AQ + G + +E VANIL + I V E+ATFY
Sbjct: 4 REKIEEAAARYPD--QRSAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
T F PVG H+Q+C CML E L+ + K D +
Sbjct: 62 TLFHTEPVG-MFHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTL 113
>gi|297203643|ref|ZP_06921040.1| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
gi|297148464|gb|EDY61257.2| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
Length = 225
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ A++P+L Q + G V + A+ V+A L+++ V + TFY F+ P R V+
Sbjct: 90 ERGALLPVLHAVQAELGHVPQEAVPVLAEELNLSRADVHGVVTFYHDFRREP-AGRTTVR 148
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
+C C G ++L+ R + +DG+++ E+V C G C P V Y
Sbjct: 149 ICRAEACQALGADQLVSYAR-ESGLPLGETAADGSVTVEQVFCLGNCALGPSVEANGRLY 207
Query: 158 EDLTPERLEEIID 170
+ P RL I++
Sbjct: 208 GRVGPARLGSILN 220
>gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 637
Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 97/208 (46%), Gaps = 10/208 (4%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+++ + A ++ +++RYP ++P+++ +++G++S ++ +AN + M V
Sbjct: 74 TYNVDEAAGLDSILARYPKHPQY--LLPIIIEESDKKGYISDPSLVKIANHVQMHAPHVE 131
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLS 134
+ + Y F V +C CM++G +K+++ + K + + +G +
Sbjct: 132 SVISHYHFFPRKHTSDTH-VYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190
Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
+ + G CVN P ++I G D E LT + I ++ ++ +G T +
Sbjct: 191 FHGMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDNIEESLNSLKGKTYKWAKNNIVEQ 250
Query: 191 SAPAGGL-TSLLDNNSKKRGKKKKDDKI 217
S + G SLL+N+ + KK ++
Sbjct: 251 SLKSKGKEYSLLENHISVKDAIKKAVQM 278
>gi|221632799|ref|YP_002522021.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
gi|221155661|gb|ACM04788.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
Length = 182
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 7/159 (4%)
Query: 22 SAIWVNEVIS-RY-PPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ ++ RY P Q V+ AQ GWV A +++A L + RV
Sbjct: 13 DLQPLRRILEERYRPRDHQEAQELVVGACQEAQHLYGWVPPQAAQLIAEHLGVTINRVYG 72
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFY F+ P G + +C C + G +K+++ R + SDG L+
Sbjct: 73 LLTFYADFRTEPPGE-HFLWLCHGAACYIAGSQKVVDALRTEYRLGEDGTTSDGLLTVHV 131
Query: 138 VE-CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174
+ C GAC AP+ + + L RL E+++
Sbjct: 132 FDGCLGACDLAPVAQLDHHEYIGQLDANRLRELVEELRA 170
>gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 641
Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ A ++E++++YP + ++P+++ +++G++S +I ++ L M ++
Sbjct: 75 YNSNEAAGLDEILAKYPKEQEY--LLPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIDS 132
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135
I + Y F V +C CM++G +L++ + DG+ +
Sbjct: 133 ILSSYHYFPREHTSDAH-VYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 191
Query: 136 EEVECQGACVN-APMVMI---GKDTYEDLT---PERLEEIIDAFSTGQGDTIRP 182
+ G CVN AP +MI G + E T + +++ + A + + +
Sbjct: 192 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRLKALKDLKKELPKW 245
>gi|16330690|ref|NP_441418.1| bidirectional hydrogenase complex protein HoxE [Synechocystis sp.
PCC 6803]
gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydrogenase subunit [Synechocystis sp. PCC
6803]
Length = 173
Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
Q A+I +L +AQE G++ + VA L + RV +ATFY F L P + V
Sbjct: 37 QDALIEILHKAQEIFGYLEEDVLLYVARGLKLPLSRVFGVATFYHLFSLKP-SGKHTCVV 95
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C T C ++G L++ ++H KP DG +S C GAC AP V+
Sbjct: 96 CLGTACYVKGAGDLLKTLDQEVHLKPGETTEDGQMSLVTARCIGACGIAPAVVYDGKVLG 155
Query: 159 DLTPERLEEIID 170
E + I
Sbjct: 156 KQNDEAVLAAIQ 167
>gi|110589188|gb|ABG77103.1| NADH dehydrogenase I E subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 123
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVL 76
FS E ++ +++YP QSAV+ L Q+ GW++ A ++ VA LDMA I V
Sbjct: 13 FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVY 72
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
E+ATFY+ ++L PVG + + +C CM+ ++++E ++
Sbjct: 73 EVATFYSMYELKPVG-KHKICICTNVSCMINNSDRIVEHLEKRLGI 117
>gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
Length = 568
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 23/210 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q ++ V ++ P R + +I L R Q+Q G +S A + +
Sbjct: 21 RRTPKGRQLEDGAW-----AEVQALLGEGP--RRRDLLIEYLHRIQDQFGHLSAAHLRAL 73
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + ++ V E+A+FY F + ++VC + C L G + L +
Sbjct: 74 AEEMRLSQAEVYEVASFYAHFDVIREGETPPPALTIRVCDSLSCELAGAQALKSALED-- 131
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
G + C G C AP+V +G + TPE + + A + G
Sbjct: 132 ------GVDPGQVRILRAPCMGRCDTAPVVELGHHHIDHATPESV---LAAVAAGDTHAH 182
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
P + AGG +L D +
Sbjct: 183 VP-EYEGFEAYRAAGGYATLADLRAVANAD 211
>gi|84686200|ref|ZP_01014095.1| ATP synthase subunit E [Maritimibacter alkaliphilus HTCC2654]
gi|84665727|gb|EAQ12202.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2654]
Length = 160
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
S + EVI Y + + ++P+L E V A++ +A+ L++ V +
Sbjct: 8 SAPDLGAIQEVIEAY--THLEGPLLPILHAMMEAFDHVPEDAVQPIADALNIGRAEVHGV 65
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
+FY F+ P R V++C C G L + ++ +G ++ E V
Sbjct: 66 ISFYHDFRTLP-AGRHIVKICRAEACQALGANGLADAVLTRLGTSWHGTTPNGAVTIEPV 124
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C N P MIG L +LE +I
Sbjct: 125 YCLGLCANGPAAMIGDKVVGALDEAKLERVISE 157
>gi|319937312|ref|ZP_08011719.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
gi|319807678|gb|EFW04271.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
Length = 163
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+++S ++++VI R+ + ++ L Q + G++ A+E ++ LD ++
Sbjct: 3 KLNQKSLDFIDDVIYRHKDEKGPIKLM--LHEIQNELGYIPFEAMEKMSEALDEPIAKIY 60
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ TFY+QF P G + + VC T C + G + ++++ + DG S +
Sbjct: 61 GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLVEMTGAPVNGTSQDGVFSID 119
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTP--ERLEEIIDAFSTGQGDT 179
C GAC AP+V + + T E L+ ++ + +
Sbjct: 120 ATRCVGACGLAPVVSVDGTVFG-CTKQLEDLKMLVLDYKKEEAPA 163
>gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 637
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+++ + A ++ +++RYP ++P+++ +++G++S ++ +AN + M +V
Sbjct: 74 TYNVDEAAGLDSILARYPKHPQY--LLPIIIEESDKKGYISDPSLVKIANHVQMYAPQVE 131
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLS 134
+ + Y F V +C CM++G +K+++ + K + + +G +
Sbjct: 132 SVISHYHFFPRKHTSDTH-VYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190
Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
+ + G CVN P ++I G D E LT + I ++ ++ +G T +
Sbjct: 191 FHAMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDSIEESLNSLKGKTYKWAKNNIVEQ 250
Query: 191 SAPAGGL-TSLLDNNSKKRGKKKKDDKI 217
S A G SL++N+ + KK ++
Sbjct: 251 SLKAKGKEYSLIENHISVKDAIKKAVQM 278
>gi|323139482|ref|ZP_08074530.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
ATCC 49242]
gi|322395284|gb|EFX97837.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
ATCC 49242]
Length = 157
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
E+I+ + + +P+L + G V AA+ +A L++ + + TFY
Sbjct: 10 ERAREIIAAH--MGLEGPALPILHALMAEFGHVPEAAVREMAEALNITRAEMHGVVTFYH 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F P R +++C C G EK + K+ + DG+L+ E V C G
Sbjct: 68 DFHREP-HGRHTLKICRAESCQSMGAEKQAKDFLAKLKLEWGQTTPDGSLTVEPVYCLGL 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C ++P + + + +L+EI+
Sbjct: 127 CAHSPSALFDGEPIGCVDAAKLDEIVAEAK 156
>gi|307292623|ref|ZP_07572469.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
chlorophenolicum L-1]
gi|306880689|gb|EFN11905.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
chlorophenolicum L-1]
Length = 155
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++ + + + R + ++PLL QE+ G++ AAI +A L+++ V +
Sbjct: 4 EDTVRLIEDWTKAH--GRTRDRLLPLLHMLQEEIGFIDDAAIPAIAENLNLSRADVHGVV 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ R V+ C C RG + + ++ DG ++ E +
Sbjct: 62 TFYHDFRR-APAGRHVVKFCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P ++ + LE I +
Sbjct: 121 CLGLCAIGPNALVDGKPVARIDQAALERIAQEIAA 155
>gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
101886]
gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
101886]
Length = 609
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V+ +++RY R + ++ +L+ QE EG++S +++ V+A+ L+++ + V E +FY
Sbjct: 5 VDAIMARYLHRRER--LLDMLIALQETEGYISDSSVNVLASGLNLSPLDVRETISFYHFL 62
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
P + + + T ++G E++ I +G + +C G
Sbjct: 63 HDQP-AGKHTIYLADTVIARMKGYEEVKAALEEAIGCAFGEVTENGEFGLYDTQCIGLSD 121
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
P +++ + LTP++++ ++ A G
Sbjct: 122 QEPAMLVDGIPFTHLTPDKVQTLVVALKAGVSP 154
>gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
Length = 561
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 31/222 (13%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q ++ V +++ P R + +I L Q++ +S A + +
Sbjct: 18 RRTPKGRQVEDKAW-----AEVRDLLGDRP--RRRDLLIEFLHLIQDEYRCLSAAHLRAL 70
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + ++ V E+ATFY F + ++VC + C L G E+L E N +
Sbjct: 71 AEEMRLSMAEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLREALENGM 130
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ +G + TPE++E A + G+
Sbjct: 131 DPAQ--------VRVMRAPCMGRCDTAPVLELGHNHIGHATPEKVEA---AIAAGETHAP 179
Query: 181 RPGPQIDRISSAP----AGGLTSLLDNNSKKRGKKKKDDKIS 218
++R + GG + L ++ ++ ++ ++
Sbjct: 180 -----VERYETLSAYLEEGGYSELKALRAEGDWEEVQEKILA 216
>gi|295677292|ref|YP_003605816.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
CCGE1002]
gi|295437135|gb|ADG16305.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
CCGE1002]
Length = 161
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
++ +L Q++ G+V AA+ +A +L+++ V + T+Y F+ +P VQ+C
Sbjct: 23 LMTVLHAIQDEIGFVPPAAVGPLARVLNLSRAEVHGVITYYHHFRTTP-AAPVTVQLCRA 81
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L + + + DG T+ E V C G C +P +M+ + +
Sbjct: 82 EACRSMGTEALAQHIEAHTGCRFDAGHHDGATVELESVYCLGQCALSPAMMLNGTLHARV 141
Query: 161 TPERLEEIIDAFSTGQGDTI 180
TP++ + ++ A ++ + +
Sbjct: 142 TPQKFDALLAA-ASKRVEVP 160
>gi|90425543|ref|YP_533913.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
gi|90107557|gb|ABD89594.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 157
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ + ++ + + + ++A++ L Q EG+VS A + A++L ++ +
Sbjct: 1 MTLNPQTTQAIRKAADSH--GGAKAAMLEALKLVQAVEGYVSDAHLAEAASVLGVSTAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+ SPVG + +C C L G + + + ++ DG +
Sbjct: 59 DSLATFYSHIFRSPVGET-VILLCDGLSCYLCGGDAVRDAVMQRLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
V C G C AP ++G D L+ + L ++I
Sbjct: 118 INVCCIGGCDVAPAALVGPDRRLVGPLSADDLNQLI 153
>gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
Length = 568
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 18/199 (9%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V ++ P R +I L + Q+ G +S A + +A + M+ + E+ATFY
Sbjct: 39 DEVRALLGDAP--RRADLLIEHLHKIQDTHGCLSAAHLRALAEEMRMSMAEIYEVATFYA 96
Query: 84 QFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
F + ++VC + C L G ++L N ++ G +
Sbjct: 97 HFDVVKEGETPPPALTIRVCDSLSCELAGAQELKAALENGLNP--------GEVRVLRAP 148
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199
C G C AP++ +G + TPE++ A + G P GG +
Sbjct: 149 CMGRCDTAPVLELGHAHIDHATPEKVTA---AIAAGDTHVHIP-SYETFSDYVAEGGYET 204
Query: 200 LLDNNSKKRGKKKKDDKIS 218
L +K ++D ++
Sbjct: 205 LKTLRETGDWEKVQEDVLA 223
>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
Length = 1206
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 79/181 (43%), Gaps = 11/181 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ A ++E++++YP + ++P+++ +++G++S +I ++ L M ++
Sbjct: 631 YNANEAAGLDEILAKYPKEKEY--LMPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIES 688
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK--IHQKPLHRNSDGTLSW 135
I + Y F CM++G +L++ + IH+ DG+ +
Sbjct: 689 ILSSYHYFPREHTIAILMSICVHCHNCMMKGQGRLLKTIQETYDIHETHGGVAKDGSFTL 748
Query: 136 EEVECQGACVN-APMVMI---GKDTYEDLT---PERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ G CVN AP +MI G + E T + +++ + + + + + R
Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLGDNIDQRLKSLKNLKKELPKWPKNNIR 808
Query: 189 I 189
Sbjct: 809 E 809
>gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
Length = 560
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +S+E+ V V+ P R + +I L Q+ G +S + +A + +
Sbjct: 20 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDACGHLSADHLAALAFEMKLGQ 77
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + ++VC + C L G E+L +
Sbjct: 78 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLRAALEEGLDP------ 131
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G + C G C AP++ +G + + TPE++ I A
Sbjct: 132 --GQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA 172
>gi|225621402|ref|YP_002722661.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
hyodysenteriae WA1]
gi|225216223|gb|ACN84957.1| DH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
hyodysenteriae WA1]
Length = 168
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E+ A + ++S++ + + +I + Q+ G+V R + V+ ++ R+ EI
Sbjct: 11 EDIADEIKSLVSKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEETNIPLARIYEIL 68
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEV 138
TFY F L P + VC T C L+G +L+E + K++ K + +D EEV
Sbjct: 69 TFYNYFTLEPPAENN-IAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKLEEV 127
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
C G C AP++ ++ + +++I + +
Sbjct: 128 RCIGCCGLAPVITFNEEVSGRVV---IDDIAKFIKNNNEEEKK 167
>gi|254431436|ref|ZP_05045139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
sp. PCC 7001]
gi|197625889|gb|EDY38448.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
sp. PCC 7001]
Length = 178
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
P+ ++ +I + A+I +L + QE G++ A+E VA L
Sbjct: 2 PAPPTLAELPPQAVERTTRLIRQ--QRGRADALIEVLHQVQELYGYLPPGALEQVARELK 59
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
+ RV +A+FY F+L T VC T C ++G +L ++ +
Sbjct: 60 LPLARVHGVASFYHLFRLEA-PTAHRCAVCLGTACFVKGGGELAARLEQRLGLQLDDPAG 118
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDL---TPERLEEIIDAF 172
+G + E V C GAC AP++++ L P L+ + A
Sbjct: 119 NGNWALEHVSCLGACGQAPVLVVDGQMEPRLPMDDPAALDGRLAAL 164
>gi|116624104|ref|YP_826260.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
gi|116227266|gb|ABJ85975.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
Length = 170
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
R A+I L QE G++ A + VA++L + RV ATFY F L P G R
Sbjct: 28 GREPHALIETLHTVQECFGYLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKG-RHT 86
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
VC T C ++G L+ + KP +DG LS C G+C AP ++ +
Sbjct: 87 CVVCTGTACYIKGAPALLGAIEKQYGIKPGETTADGELSVLTARCLGSCGLAPAAVMDQA 146
Query: 156 TYEDLTPERLEEIIDA 171
+ P + I+
Sbjct: 147 VLGKIGPAEMLARIEK 162
>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 1198
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ A ++E++++YP R ++P+++ +++G++S +I ++ L M ++
Sbjct: 632 YNPNEAAGLDEILAKYPKEREY--LLPIIIEEHDKKGYISDPSIVKISEYLGMYPAQIDS 689
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135
I + Y F V +C CM++G +L++ + DG+ +
Sbjct: 690 ILSSYHYFPREHTSDAH-VYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 748
Query: 136 EEVECQGACVN-APMVMI---GKDTYEDLT---PERLEEIIDAFSTGQGDTIRP 182
+ G CVN AP +MI G + E T + +++ A + + +
Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRRKALKDLKKELPKW 802
>gi|27378249|ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA
110]
gi|27351396|dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110]
Length = 162
Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
E+I+ + +R + A + +L Q G+V AAI +VA L+++ V + TFY F
Sbjct: 19 EIIAEH--ARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDF-R 75
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R +++C C G + L ++ + +D ++ E + C G C A
Sbjct: 76 HKPAGRHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYCLGLCATA 135
Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
P M+ L +RL+ ++
Sbjct: 136 PSAMLDGRLVGRLDEKRLDALVAE 159
>gi|269119250|ref|YP_003307427.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
termitidis ATCC 33386]
gi|268613128|gb|ACZ07496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
termitidis ATCC 33386]
Length = 158
Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++I +L +AQ G++ R E VA L+ + V + +FY+ F + P G V
Sbjct: 24 KKGSLISVLHKAQGIFGYLPREIQEYVAEKLNESLANVYGVVSFYSFFTMVPKGE-HAVS 82
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C +RG +K++ + ++ K + DG S + + C GAC AP+V++G+ Y
Sbjct: 83 VCMGTACYVRGADKVLGEFQKELGIKSGETSLDGKFSIDALRCVGACGIAPVVLVGEKVY 142
Query: 158 EDLTPERLEEIIDAFS 173
+ + + +++II+ +
Sbjct: 143 KKVEVKEVKKIINEYK 158
>gi|254413281|ref|ZP_05027052.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Microcoleus chthonoplastes PCC 7420]
gi|196179901|gb|EDX74894.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
[Microcoleus chthonoplastes PCC 7420]
Length = 197
Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+I +L +AQE G++ + VA L + RV +ATFY F L P G
Sbjct: 59 AQYRPDVLIEVLHKAQEAFGYLEEDVLLYVARGLKLPLSRVYGVATFYHLFSLKP-GGTH 117
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G +++ + DG +S C GAC AP V+
Sbjct: 118 TCVVCTGTACYVKGGGQVLSALEEHFGIQVGDTTPDGEMSLLSARCLGACGIAPAVVFDG 177
Query: 155 DTYEDLTPERLEE 167
T E E
Sbjct: 178 TVAPKQTAELALE 190
>gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
HTCC2150]
gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
HTCC2150]
Length = 562
Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
+ QP + + + V ++ P R + +I L Q++ G +S A + +A
Sbjct: 16 KGRNQPKGRQYEDGAMAEVRALLGDKP--RDRDLLIEHLHLIQDEYGHLSAAHMRALAEE 73
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
+ ++ V E+A FY+ F + A ++VC + C L G + L+ ++ +
Sbjct: 74 MRLSQAEVYEVAKFYSHFDVVKEDEIAPPDLTIRVCDSLSCELAGAQALMAALKDGLDPA 133
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ C G C AP++ IG + + TP+ +E+ I A
Sbjct: 134 --------KVRVLRAPCMGRCDTAPVLEIGHNHIDHATPQLVEKAIAA 173
>gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
Length = 567
Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +S+E+ V V+ P R + +I L Q+ G +S + +A + +
Sbjct: 27 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDVYGHLSADHLAALAFEMKLGQ 84
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + ++VC + C L G E+L +
Sbjct: 85 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCALAGAEQLRAALEEGLDP------ 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G + C G C AP++ +G + + TPE++ I A
Sbjct: 139 --GQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA 179
>gi|158340817|ref|YP_001521985.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
subunit, chain E [Acaryochloris marina MBIC11017]
gi|158311058|gb|ABW32671.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
subunit, chain E [Acaryochloris marina MBIC11017]
Length = 177
Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ + R+ +++I +L +AQE G++ R + +A+ L + +V +ATFY F
Sbjct: 24 LEATMKRH--QYQPNSLIEVLHKAQELFGYLERDILLHIAHSLKLPPSQVYGVATFYHFF 81
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
L+P R VC T C ++G L+ H + DG LS C GAC
Sbjct: 82 SLTP-SGRHTCVVCMGTACFVKGAASLLSTVEQIAHIQAGETTQDGGLSLSTARCLGACG 140
Query: 146 NAPMVMIGKDTYEDLTPERLEE 167
+AP V++ T E L +
Sbjct: 141 SAPAVVLDGQVVGYQTSENLGQ 162
>gi|294146590|ref|YP_003559256.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
japonicum UT26S]
gi|292677007|dbj|BAI98524.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
japonicum UT26S]
Length = 155
Score = 95.2 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EE+A + + + R + ++PLL QE+ G++ AI+++A L++ V +
Sbjct: 4 EETARLIEDWTQTH--GRTRDRLLPLLHMLQEEIGFIDGNAIKIIAEKLNLTRADVHGVV 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
TFY F+ R V++C C RG + + ++ DG ++ E +
Sbjct: 62 TFYHDFRR-APAGRHVVKLCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C P ++ + L+ I +
Sbjct: 121 CLGLCAVGPNALVDGRPVARIDAAALDRIAQEVAA 155
>gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylocella silvestris BL2]
gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylocella silvestris BL2]
Length = 603
Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 6/195 (3%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V +++ + R + + + + Q++ G++S A++ +A L + + + ++A+FY+
Sbjct: 7 AAVKDIVKEFGADRTR--LTDIALAVQQRFGFISDDAVQAIATGLGVHAVEIEDMASFYS 64
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+P G R +++ T ++G + + ++DG + E G
Sbjct: 65 FLDRAPRG-RFRIRLSKTPISFMKGATDVARAFEEALGLSLGDTSADGQFTLEWTSDIGM 123
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST-GQGDTIRPGPQIDRISSA--PAGGLTSL 200
P +I LTPE + +I+ A G D PQ + A +SL
Sbjct: 124 ADQEPSALINSTVLTALTPEDVPQIVAALRRCGPDDGPPRFPQHKPQGAMLPKAAIRSSL 183
Query: 201 LDNNSKKRGKKKKDD 215
+ G+ + D
Sbjct: 184 VQPGPLLSGRPGRAD 198
>gi|89055051|ref|YP_510502.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Jannaschia sp.
CCS1]
gi|88864600|gb|ABD55477.1| formate dehydrogenase gamma subunit [Jannaschia sp. CCS1]
Length = 167
Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
++ + V+ +I + + ++P+L Q G+V A ++A L++ + +
Sbjct: 11 DDLLVEVDAIIQK--NIALEGPLLPILHDVQAAFGYVPDDARALIATALNITEAELHGVI 68
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY F+ P G R +++C C G + + ++ +DG L+ E +
Sbjct: 69 SFYHDFRRKPAGKR-VLKICRAEACQAMGANAMSDAVLAQLGLGWGETAADGGLTVEPIY 127
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
C G C P MI +T + L
Sbjct: 128 CLGLCACGPAAMIDGKLKGRVTADSLIA 155
>gi|307730639|ref|YP_003907863.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia sp.
CCGE1003]
gi|307585174|gb|ADN58572.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
sp. CCGE1003]
Length = 161
Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+++R+ +S ++ +L Q++ G+V + +A +++++ V + T+Y F+
Sbjct: 10 EELVARH-AQPGRS-LLAVLHAIQDELGYVPPDTVAPLARVMNLSRAEVHGVITYYHHFR 67
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACV 145
P VQ+C C G E L + + + G + E V C G C
Sbjct: 68 TQP-AAPVTVQLCRAEACRSMGTEALARHIESHTGCRFDAEHEAGAAVELESVYCLGQCA 126
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
+P +M+ + +TP++ + I A
Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152
>gi|115523731|ref|YP_780642.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
gi|115517678|gb|ABJ05662.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
palustris BisA53]
Length = 157
Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ S ++ + + + ++A++ L Q EGWVS A + A +L + +
Sbjct: 1 MTLSAQTQQAIRDAAVHH--GGPKAAMLEALKLVQAAEGWVSDAHLAEAAGVLGVTTAEI 58
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ATFY+ SPVG + +C C L G + + + K+ DG +
Sbjct: 59 DSLATFYSHIFRSPVGET-VLLLCDGLSCYLNGADDVRDAVMQKLGIGFGETTPDGKFTL 117
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFS 173
V C G C AP ++G D L+ L +I+
Sbjct: 118 INVCCVGGCDRAPAALVGPDRQLIGPLSAADLTALIEGTR 157
>gi|297569385|ref|YP_003690729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296925300|gb|ADH86110.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 206
Score = 94.8 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 7/178 (3%)
Query: 1 MSVRRLAEEEFQ--PSSFSFSEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
M LAE+ P + + W V + R +I L Q G++
Sbjct: 22 MGKHALAEKNMPSAPRPVTNTAADKRWRPVEAAMRR--NGYRAGGLIEALHAVQRAYGYI 79
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
AA+ + L + ++ + TFY F L P G R VC T C ++G ++L++
Sbjct: 80 DEAAMRAIGAALQLPLSKIYGVVTFYHFFHLKPKG-RHTCVVCLGTACYIKGADRLLQTI 138
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ P +DG LS C GAC AP V+I + + ++
Sbjct: 139 SREQQVSPGETTADGRLSLLTARCVGACGQAPAVVIDDQVVGQAEESAIHRQLAGLNS 196
>gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Leptothrix cholodnii SP-6]
gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Leptothrix cholodnii SP-6]
Length = 627
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
++ R+ R A++ +L Q + W+ R + ++A+ L + V +A+FY F
Sbjct: 36 EALLRRH--GRNPHALVQILREVQAHQTWLPRDTLSLLAHELGLTLAHVEGVASFYRFFH 93
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ PVG + + + G E L+ ++ +P +DG +S C G C
Sbjct: 94 MQPVGE-YRLLLSDNITDRMLGSEALLADLCQQLRVEPGRMRADGRVSVARSSCTGLCDQ 152
Query: 147 APMVMIGKDT-YEDLTPERLEEIIDAFST 174
P +++ L +R+ I +
Sbjct: 153 GPALLVNHHHVITRLDAQRVARIAELIEA 181
>gi|51246060|ref|YP_065944.1| bidirectional hydrogenase complex protein HoxE [Desulfotalea
psychrophila LSv54]
gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (ubiquinone) I, chain E [Desulfotalea
psychrophila LSv54]
Length = 194
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
A+I L Q G++ R A+E VA+ L + +V +ATFY F L P G
Sbjct: 51 NGNRPEALIETLHTVQNTFGFIDRDAMEYVASGLHVPLSQVYSVATFYHYFTLKPPGE-H 109
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C + G L+E N + P + DG +S C G+C AP +
Sbjct: 110 TCVVCTGTACYVSGSSALLETIHNTVGIDPGETSQDGKVSLLTTRCLGSCGLAPAAVFDG 169
Query: 155 DTYEDLTPERLEE 167
L +EE
Sbjct: 170 QVAGKLQSATIEE 182
>gi|332527762|ref|ZP_08403801.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
JA2]
gi|332112158|gb|EGJ12134.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
JA2]
Length = 136
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ V I+R+ + ++P+L Q G++ R A+ +A L+++ V + ++
Sbjct: 2 TQDIVASTIARH--QGREGPLLPILHELQHTLGYIPREALPRIAQALNLSRAEVHGVVSY 59
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
Y F+ +QVC C G ++L + + G E V C
Sbjct: 60 YHHFRTEKPTAP-VLQVCRAESCQAMGADRLWDHAQAH-----------GGCQVEAVYCL 107
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169
G C ++P M+G++ LTPE+L+E++
Sbjct: 108 GLCASSPAAMLGEEPLGRLTPEKLDEVL 135
>gi|220920303|ref|YP_002495604.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
nodulans ORS 2060]
gi|219944909|gb|ACL55301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
nodulans ORS 2060]
Length = 157
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+I+ + + + A +P+L QE G+V AI ++A+ L+++ V TFY
Sbjct: 10 ARAARIIAEH--THLEGATLPILHALQETFGYVDNEAIPLIADALNLSKAEVHGCITFYH 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ P R V++C C G + L ++ DG ++ E V C G
Sbjct: 68 DFRAKP-AGRHVVKLCRAEACQAVGADALHAEVLRRLEVDWHGTTRDGAVTVEPVFCLGL 126
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C P +I + L + L+ + +
Sbjct: 127 CACGPAALIDGEPVARLDADGLQAALTEVAA 157
>gi|167570806|ref|ZP_02363680.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
C6786]
Length = 154
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C
Sbjct: 18 SLVAILHAIQDEAGYVPSACVEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 76
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 77 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 135
Query: 161 TPERLEEIIDA 171
T ER + ++DA
Sbjct: 136 TAERFDALLDA 146
>gi|167563644|ref|ZP_02356560.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
EO147]
Length = 157
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C
Sbjct: 21 SLVAILHAIQDEAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 138
Query: 161 TPERLEEIIDA 171
T ER + ++DA
Sbjct: 139 TAERFDALLDA 149
>gi|186475494|ref|YP_001856964.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
phymatum STM815]
gi|184191953|gb|ACC69918.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
phymatum STM815]
Length = 170
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ LL Q+ G+V + +A ++++ V + T+Y F VQ+C
Sbjct: 22 SLVALLHAIQDDVGFVPPDTVAPLARTMNLSRAEVHGVITYYHHF-RQSPAAPVTVQLCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQ----------KPLHRNSDGTLSWEEVECQGACVNAPMV 150
C G E L + + DG + E V C G C +P +
Sbjct: 81 AEACRSMGTEALAQHIEARTGCRFDAHKHGAHDGHDHACDGAVGLESVYCLGQCALSPAM 140
Query: 151 MIGKDTYEDLTPERLEEIIDA 171
MI + + +TP++ + ++ A
Sbjct: 141 MINGELHARVTPQKFDALLAA 161
>gi|148554395|ref|YP_001261977.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
wittichii RW1]
gi|148499585|gb|ABQ67839.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
wittichii RW1]
Length = 159
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 3/145 (2%)
Query: 19 SEESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ E V +++R + A++PLL QE+ G+V + VA ++++ V
Sbjct: 2 TMERREPVEAMVARLLAAQGERRGALLPLLHDLQEELGFVGEETVAAVAAAMNLSRAEVH 61
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ +FY F R V+ C C RG + +++ +DG ++ E
Sbjct: 62 GVVSFYHDF-RKAPAGRHVVKYCRAESCRSRGGVAIEAALADRLRVTMGETRADGQVTLE 120
Query: 137 EVECQGACVNAPMVMIGKDTYEDLT 161
V C G C P ++ +
Sbjct: 121 PVYCLGLCAIGPNALVDGAPVARID 145
>gi|288941581|ref|YP_003443821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
vinosum DSM 180]
gi|288896953|gb|ADC62789.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
vinosum DSM 180]
Length = 164
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R
Sbjct: 27 NGYAGHALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RH 85
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G LIE + P D LS C GAC AP V++
Sbjct: 86 TCVVCTGTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDG 145
Query: 155 DTYEDLTPERLEEIIDAF 172
+ + L ++
Sbjct: 146 EVLGKQATDTLVATLEEL 163
>gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum]
Length = 160
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R
Sbjct: 23 NGYAGHALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RH 81
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VC T C ++G LIE + P D LS C GAC AP V++
Sbjct: 82 TCVVCTGTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDG 141
Query: 155 DTYEDLTPERLEEIIDAF 172
+ + L ++
Sbjct: 142 EVLGKQATDTLVATLEEL 159
>gi|323526973|ref|YP_004229126.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
CCGE1001]
gi|323383975|gb|ADX56066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
CCGE1001]
Length = 161
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+++R+ +S ++ +L Q++ G+V AA+ +A +++++ V + T+Y F+
Sbjct: 10 EELVARH-AQPGRS-LVAVLHAIQDELGYVPPAAVAPLARVMNLSRAEVHGVITYYHHFR 67
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACV 145
P VQ+C C G E L + + + + G + E V C G C
Sbjct: 68 TQP-AAAVTVQLCRAEACRSMGTEALAQHIESHTGCRFDAAHEAGAAVELESVYCLGQCA 126
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
+P +M+ + +TP++ + I A
Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152
>gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Labrenzia alexandrii DFL-11]
gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Labrenzia alexandrii DFL-11]
Length = 558
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 19/205 (9%)
Query: 1 MSVRR-LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
MS + L+ + QP + + V ++ P R + +I L + Q+ G +
Sbjct: 1 MSFGKGLSRKPSQPKGRQLEDAALTEVQALLGEEP--RRRDLLIEHLHKIQDAYGCLEAR 58
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
+ +A + ++ V E+A+FY F + V+VC + C L+G + L
Sbjct: 59 RLRALAEEMRLSQAEVYEVASFYHHFDIVREGEVKPAPVTVRVCDSITCSLKGADALAAS 118
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ P ++V C G C AP +GK + + + G
Sbjct: 119 LES--GVDPSKVR------IQKVPCIGRCAAAPAAQVGKRAVDHANEMSVRSL---LFEG 167
Query: 176 QGDTIRPGPQIDRISSAPAGGLTSL 200
P + +GG L
Sbjct: 168 TVAPDIP-QYTGFEAYRASGGYKVL 191
>gi|298492585|ref|YP_003722762.1| NADH dehydrogenase 24 kDa subunit ['Nostoc azollae' 0708]
gi|298234503|gb|ADI65639.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit ['Nostoc azollae'
0708]
Length = 150
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ I R+ Q VI +L RA E G++ + +A+ L + V +ATFY F
Sbjct: 2 DATIKRH--QYQQDTVIEILHRASELFGYLELDLLLYIAHKLKLPPSWVYGVATFYHLFF 59
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L+P G V VC T C ++G + ++ N + S G + C GAC
Sbjct: 60 LAPKGKHNCV-VCTGTACYVKGSQAILSSLENVTKIRAGETTSYGEIYLMTARCLGACGI 118
Query: 147 APMVMIGKDTYEDLTPERLEE 167
A V+ + TPE + E
Sbjct: 119 ASAVVFDGAVLGNQTPESVCE 139
>gi|323480623|gb|ADX80062.1| NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis
62]
Length = 148
Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIA 79
S I +I + ++ +L+ Q +EG++ + ++VA L + RV EI
Sbjct: 5 SLIEKEAIILENDADPQR--ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIV 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+FY + P + +++C +TPC G + EV + DG + +
Sbjct: 63 SFYAILKTEP-QAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIP 121
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERL 165
C GAC P++ I + LT E++
Sbjct: 122 CIGACDLGPVIKIKDTVFSQLTEEKI 147
>gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
Length = 569
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 23/217 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q + + V ++ P R +I L Q++ G +S A + +
Sbjct: 26 RTHTKGRQ-----LDDAAWDQVRALLGDKP--RRADLLIEHLHLIQDEYGHLSAAHLRAL 78
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + ++ V E+ATFY F + +++C + C + G ++L +
Sbjct: 79 AEEMRLSMAEVYEVATFYAHFDVVKEGEVPPPALTIRICDSLACEMAGAQELKAALEEGL 138
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP + IG + + T E++E +I + G
Sbjct: 139 DATQ--------VRVVRAPCIGRCDTAPALEIGHNFVDHATVEKVEAVI---AAGDIHVH 187
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
P D + + GG +L + + +D +
Sbjct: 188 VP-DYEDFAAYSNDGGYETLKTLRATGDWEAVQDQLL 223
>gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath]
gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath]
Length = 561
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 23/198 (11%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
RRL + + +P + ++ P R +I L + Q+ G VS I
Sbjct: 14 RRLGKPKGRPV----DAHVLEEIQRLLGAEP--RRADLLIEHLHKIQDHYGHVSARHIAA 67
Query: 64 VANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A + ++ V E+ATFY F + V+VC + C + G L+ ++
Sbjct: 68 LAFEMKLSQAEVYEVATFYHHFDVVAEGESPPPPLTVRVCESLSCAMAGAHALMPALKDA 127
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + + + V C G C +AP+ ++G++ + TP + ++ GQ
Sbjct: 128 LGE---------GVRIQPVPCVGRCQHAPVAVVGQNPVDRATPAAVSAAVEQ---GQT-L 174
Query: 180 IRPGPQIDRISSAPAGGL 197
P + GG
Sbjct: 175 PAPAAYRSYAAYQADGGY 192
>gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
sp. 1NLS2]
gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
sp. 1NLS2]
Length = 745
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 24/218 (11%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
RR A+ P +++ + ++ SR + +I L Q++ G +S A +
Sbjct: 194 RRRAKPT--PKGRQIDPKASEEIEFLLEG--KSRRRDMLIEYLHLIQDKWGQISAAHLAA 249
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A+ + +A+ V E+ATFY F + G ++VC + C + G E L++ +NK
Sbjct: 250 LADEMKLAFAEVFEVATFYAHFDVVKEGAPDIAPVTIRVCDSLTCAMLGAETLMKELKNK 309
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ C G C AP +G + + T ++ ++ A
Sbjct: 310 AGPGVRVVRA---------PCVGRCDTAPAAEVGHNFVDHAT---VDNVLAALKQ-HDTH 356
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ ++ S GG T L NS + GK K+D +
Sbjct: 357 VHVPDYVEYESYIAQGGYTLL---NSLRSGKTSKEDIL 391
>gi|170693703|ref|ZP_02884861.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
graminis C4D1M]
gi|170141485|gb|EDT09655.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
graminis C4D1M]
Length = 161
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
E+++R+ +S ++ +L Q++ G+V AA+ +A ++++ V + T+Y F+
Sbjct: 10 EELVARH-AQPGRS-LLAVLHAIQDELGYVPPAAVPPLARTMNLSRAEVHGVITYYHHFR 67
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACV 145
P VQ+C C G E L + + + + G + E V C G C
Sbjct: 68 TQP-AAPVTVQLCRAEACRSMGTEALAQHIESHTGCRFDAEHKAGAAVELESVYCLGQCA 126
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
+P +M+ + +TP++ + I A
Sbjct: 127 LSPAMMVNGTLHAKITPQKFDAIFAA 152
>gi|330815878|ref|YP_004359583.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
gi|327368271|gb|AEA59627.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
Length = 156
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++SR+ +R +++ +L Q++ G+V + ++A L+++ V + T+Y F
Sbjct: 8 ADALVSRH--ARADQSLVAILHAIQDEAGYVPEGCVPLLAKTLNLSRAEVHGVLTYYHHF 65
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +Q+C C G E L+E + + + + G + E V C G C
Sbjct: 66 RTTP-PARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDQ-GAQGDVELESVYCLGFCA 123
Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
+P MI + + +T R + ++
Sbjct: 124 QSPSAMINGEPHARMTAARFDALL 147
>gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
Length = 563
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 18/215 (8%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
+ +P + + V ++ P R + +I L Q+ G +S A + +A
Sbjct: 16 KGRHRPKGRQLDDAAWAEVQALLGDRP--RHRDLLIEFLHLIQDAHGCLSAAHLRALAEE 73
Query: 68 LDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
+ ++ V E+ATFY F + PV +++C + C L G ++L + +
Sbjct: 74 MRLSQAEVYEVATFYAHFDVVKEGEPVPPALTIRICDSLSCELAGAQQLKTALEDGLDAS 133
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ C G C AP + +G + + T +++ A + G P
Sbjct: 134 E--------VRVLRAPCMGRCDTAPALELGHNHIDHAT---FDKVAAAIAAGDTHAHVP- 181
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
+ GG L + +D ++
Sbjct: 182 DYEGYSAYVANGGYAQLQALREGGDWEDVQDKVLA 216
>gi|209519329|ref|ZP_03268128.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
sp. H160]
gi|209500213|gb|EEA00270.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
sp. H160]
Length = 161
Score = 91.7 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ +P VQ+C
Sbjct: 22 SLMTILHAIQDELGYVPPAAVGPLAGALNLSRAEVHGVITYYHHFRTTP-AAPVTVQLCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYED 159
C G E L + + + DG + E V C G C +P +M+ +
Sbjct: 81 AEACRSMGTEALAQHIETHTGCRFDAGHEDGAKVELESVYCLGQCALSPAMMLNGTLHAR 140
Query: 160 LTPERLEEIIDA 171
++P++ + + A
Sbjct: 141 VSPQKFDALFAA 152
>gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
Length = 570
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++ V +++ P R +I L Q++ G +S A + +A + M+ V E+A
Sbjct: 37 EDAWDEVRALLADKP--RRADVLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVA 94
Query: 80 TFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
TFY F + +++C + C L G + L + + +
Sbjct: 95 TFYAHFDVVKEGEAPPPALTIRICDSLSCELAGAQALKTALEDGLDASE--------VRV 146
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C AP + IG + + T E+++++I A
Sbjct: 147 VRAPCMGRCDTAPALEIGHNFVDHATLEKVKQVIAA 182
>gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
carboxidovorans OM5]
gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
carboxidovorans OM5]
Length = 570
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+R + P ++ + E+++ S + +I L Q++ G +S A +
Sbjct: 19 KRRTKPT--PKGRQIDPRASGEIEELLAG--KSHRRDMLIEHLHLIQDKWGQISAAHLAA 74
Query: 64 VANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A+ + +++ V E+ATFY F + P ++VC + C + G + L++ +NK
Sbjct: 75 LADEMKLSFPEVFEVATFYAHFDVVKEGEPDIPPLTIRVCDSLTCAMLGADTLMKELQNK 134
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + C G C +AP+ +G + ++ TP ++ + +GDT
Sbjct: 135 AGPEVRVVRA---------PCVGRCDHAPVAEVGHNFIDEATPAKVLA-----AADEGDT 180
Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
P S A G +LL NS + G+ K+D +
Sbjct: 181 HAHVPDYIEYDSYVAQGGYALL--NSLRSGQTSKEDIL 216
>gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
Length = 570
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 19/169 (11%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q ++ V ++ P R + +I L Q++ G +S A + +
Sbjct: 27 RHHPKGRQLQDAAW-----EEVRALLGERP--RRRDLLIEYLHLIQDRFGHLSAAHLRAL 79
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + ++ V E+A+FY F + ++VC + C L G + L +
Sbjct: 80 AEEMRLSMAEVYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEEGL 139
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ C G C AP++ +G + + TPE+++ I
Sbjct: 140 DPTQ--------VRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVQAAI 180
>gi|254252941|ref|ZP_04946259.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
dolosa AUO158]
gi|124895550|gb|EAY69430.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
dolosa AUO158]
Length = 166
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ ++ R+ +R +++ +L Q++ G+V + + +A L+++ V + T+Y F+
Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDEAGYVPQGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139
R +Q+C C GCE L + + + D ++ E V
Sbjct: 67 T-APPARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAGHGDAASAHARADVALESVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C +P + + + +TPE+ + ++
Sbjct: 126 CLGLCAQSPSMTVNGALHAKVTPEKFDALLAD 157
>gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
Length = 561
Score = 91.3 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ V ++ P R + +I L Q+ G +S A + +A L +A
Sbjct: 21 PKGRQLDDQAWDEVRALLGDRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEELRVAQ 78
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E+ATFY F + ++VC + C L G E+L + +
Sbjct: 79 AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLACELAGAEQLKSALESGLDPAE---- 134
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ C G C AP++ +G + + TPE++E I
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVEAAI 171
>gi|187924995|ref|YP_001896637.1| NAD-dependent formate dehydrogenase, subunit gamma [Burkholderia
phytofirmans PsJN]
gi|187716189|gb|ACD17413.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
phytofirmans PsJN]
Length = 161
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V AA+ +A ++++ V + T+Y F+ P VQ+C
Sbjct: 22 SLLAVLHAIQDEVGYVPPAAVAPLARAMNLSRAEVHGVITYYHHFRTQP-PAPVTVQLCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYED 159
C G E L + + + G T+ E V C G C +P +M+ +
Sbjct: 81 AEACRSMGTEALAQHIEAHTGCRFDGEHQHGATVELESVYCLGQCALSPALMLNGTLHAR 140
Query: 160 LTPERLEEIIDA 171
+TP++ + I A
Sbjct: 141 VTPQKFDAIFAA 152
>gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
Length = 568
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V ++ P R + +I L R Q++ G +S A + +A L ++ V E+A+FY
Sbjct: 35 AEVQALLGEGP--RRRDLLIEYLHRIQDKFGHLSAAHLRALAEELRLSQAEVYEVASFYA 92
Query: 84 QFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
F + ++VC + C L G + L +
Sbjct: 93 HFDVVREGETPPPALTIRVCDSLSCELAGAQALKSALE--------QGTDPMQVRILRAP 144
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199
C G C AP+V +G + TPE + + A + G P + AGG +
Sbjct: 145 CMGRCDTAPVVELGHHHIDHATPESV---LAAVAAGDTHAHVPA-YEALDAYRTAGGYAT 200
Query: 200 LLDNNSKKRGK 210
L D + +
Sbjct: 201 LADLRATRNAD 211
>gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
Length = 574
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V E++ P R + +I L Q++ G +S A + +A L +A V E+ATFY
Sbjct: 45 QEVQELLGAAP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEELRIAQAEVYEVATFYA 102
Query: 84 QFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
F + ++VC + C L G ++L + + + +
Sbjct: 103 HFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKKALEDGLDPA--------KVRVLRAP 154
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C AP++ IG + + TPE++E I A
Sbjct: 155 CMGRCDTAPVLEIGHNHIDHATPEKVEAAIAA 186
>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium
HTCC2255]
gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium
HTCC2255]
Length = 565
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P SE++ V ++ R +I L Q++ +S + +A L ++
Sbjct: 22 PKGRQVSEDAIADVKSLLGN--RERRADLLIEYLHLIQDKFKHLSTQHLAALAEELRLSQ 79
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E+A+FY F + + ++VC + C L G + L+ K+ +K
Sbjct: 80 TEVYEVASFYAHFDIVKEDEEIPPSLTIRVCDSLSCELAGAQDLLF----KLGEKYNGG- 134
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
G + C G C AP + IG + ++ E++E+ I + + +
Sbjct: 135 --GKVRVVRAPCMGRCDTAPTLEIGHNHIDNANEEKVEKAI----ITKDFHPKIPNYENL 188
Query: 189 ISSAPAGGLTSLLDNNSKKRGK-KKKDDKI 217
+ GG L + + R + +D+ +
Sbjct: 189 KDYSANGGYAELQNLRNGSRTPDQIQDEIL 218
>gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Alicycliphilus denitrificans K601]
gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Alicycliphilus denitrificans K601]
Length = 633
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
R+ + QP ++ V +I R P + +I L ++ G + +
Sbjct: 24 RKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERHLV 78
Query: 63 VVANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A ++++ V E+A+FY F + R ++VC + C L G +L+ +
Sbjct: 79 ALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR 138
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ G + + V C G C AP+ ++ + T ER+ +D
Sbjct: 139 LRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184
>gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
[Alicycliphilus denitrificans BC]
gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Alicycliphilus denitrificans BC]
Length = 633
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
R+ + QP ++ V +I R P + +I L ++ G + +
Sbjct: 24 RKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERHLV 78
Query: 63 VVANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A ++++ V E+A+FY F + R ++VC + C L G +L+ +
Sbjct: 79 ALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR 138
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ G + + V C G C AP+ ++ + T ER+ +D
Sbjct: 139 LRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184
>gi|325523855|gb|EGD02082.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia sp. TJI49]
Length = 162
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+
Sbjct: 9 DALVERH--ARPGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGTLSWEEVECQGA 143
P R +Q+C C GCE L E + + + ++ E V C G
Sbjct: 67 TVP-PARVTIQMCRAEACRSMGCEALAEHAEARTGCRFDAAHDASDPQAVALESVYCLGL 125
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C +P + + + +TP++ + ++
Sbjct: 126 CAQSPSMTVNGVLHAKVTPQKFDALLAD 153
>gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
WH 5701]
gi|87282303|gb|EAQ74263.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
WH 5701]
Length = 168
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
A+I +L AQ+ ++S + VA L + RV A+FY F+ P R
Sbjct: 33 RADALIEVLHGAQKLYSYLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQP-PARHRCV 91
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC T C ++G LI + K R DG S EV C G C +AP+V+I
Sbjct: 92 VCTGTACQIQGAPALIAAMEEGLGLKLGARRGDGWASLSEVRCLGTCSDAPLVLIDGTVG 151
Query: 158 EDLTPERLEEIIDAF 172
TP L +
Sbjct: 152 RQQTPAGLRRWLKEL 166
>gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien
[Candidatus Puniceispirillum marinum IMCC1322]
gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 572
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 23/215 (10%)
Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
+ ++P + V ++ S + +I L Q+ E +S + +A+I
Sbjct: 25 KGRYKPKGRMLDPVALDEVRALLGN--ISPTRDMLIEYLHMIQDSEKHLSARHLAALAHI 82
Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
+ + V E+A+FY F L A V+VC + CM+ G E ++E + K
Sbjct: 83 MRIPMAEVWEVASFYDHFDLVKEDETAPPLCTVRVCTSLSCMMAGGETMLEKLQPYASDK 142
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ C GAC AP +G E + E L+ + + G +
Sbjct: 143 VRFVPA---------PCIGACDKAPAAAVGHKLVEHASFEALKAVEED---GHPEIPATA 190
Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
R A G SLL + G+K +D +S
Sbjct: 191 R---RFDDYVADGGYSLL--KALLAGEKTAEDVLS 220
>gi|107022111|ref|YP_620438.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia
cenocepacia AU 1054]
gi|116689056|ref|YP_834679.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia cenocepacia HI2424]
gi|105892300|gb|ABF75465.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia AU
1054]
gi|116647145|gb|ABK07786.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia
HI2424]
Length = 166
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A +L+++ V + T+Y F+ +P RA +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPPGCVAPLAKVLNLSRAEVHGVLTYYHHFRTAP-PARATIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVECQGACVNAPMVMIG 153
C GCE L + + + D ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERLEEIIDA 171
+ +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALLAD 157
>gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
238]
gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
238]
Length = 571
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 18/194 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ V ++ P + +I L Q++ G +S A I + + ++
Sbjct: 21 PKGRQLQDDAWDDVRSLLGSSP--CQRDLLIEYLHLIQDKFGHLSAAHIRALGEEMRISM 78
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E+ATFY F + ++VC + C L G ++L + K
Sbjct: 79 AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKVALEGGLDAK----- 133
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + + TPE++ I Q
Sbjct: 134 ---NVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVLAAI----AAQDTHAHVQDYEGF 186
Query: 189 ISSAPAGGLTSLLD 202
+ A GG +L D
Sbjct: 187 DAYAADGGYATLKD 200
>gi|325663454|ref|ZP_08151864.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470353|gb|EGC73584.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%)
Query: 23 AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ E+I Y Q ++ +L Q+ +G + A + VA + M + +
Sbjct: 2 EEQIREIIEYYTKEGETISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
Y L R +Q+C C +G L+++ K + + G
Sbjct: 62 KRY--PSLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C C P +MI Y +T E L EI+ A+
Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153
>gi|134295065|ref|YP_001118800.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia vietnamiensis G4]
gi|134138222|gb|ABO53965.1| formate dehydrogenase gamma subunit [Burkholderia vietnamiensis G4]
Length = 166
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+
Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139
R +Q+C C GCE L E + + + + D ++ E V
Sbjct: 67 T-APPARVTIQMCRAEACRSMGCEALAEHAQARTGCRFDAAHGDAADPHAPPDVALESVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C +P + I + +TPE+ + ++ +
Sbjct: 126 CLGLCAQSPSMTINGVLHAKVTPEKFDALLAQAAA 160
>gi|206561320|ref|YP_002232085.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
cenocepacia J2315]
gi|198037362|emb|CAR53295.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
cenocepacia J2315]
Length = 166
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ ++ R+ +R +++ +L Q G+V + +A L+++ V + T+Y F+
Sbjct: 9 DALVGRH--ARAGRSLVAILHAIQNDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVE 139
+P R +Q+C C GCE L + + + D ++ E V
Sbjct: 67 TAP-PARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPHAPDDVALESVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C +P + + + +TPE+ + ++
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157
>gi|78065618|ref|YP_368387.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia sp.
383]
gi|77966363|gb|ABB07743.1| formate dehydrogenase gamma subunit [Burkholderia sp. 383]
Length = 166
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
+ ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+
Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLARALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-------DGTLSWEEVE 139
+P R +Q+C C GCE L + + + G ++ E V
Sbjct: 67 TAP-PARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAAHGDAADAHAPGDVALESVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
C G C +P + + + +TPE+ + ++ +
Sbjct: 126 CLGLCAQSPSLTVNGVLHARVTPEKFDALLAEAAA 160
>gi|161525534|ref|YP_001580546.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia multivorans ATCC 17616]
gi|189349738|ref|YP_001945366.1| formate dehydrogenase subunit gamma [Burkholderia multivorans ATCC
17616]
gi|221213581|ref|ZP_03586555.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD1]
gi|160342963|gb|ABX16049.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia multivorans ATCC 17616]
gi|189333760|dbj|BAG42830.1| formate dehydrogenase gamma subunit [Burkholderia multivorans ATCC
17616]
gi|221166370|gb|EED98842.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD1]
Length = 166
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
++ R+ +R +++ +L Q++ G+V + +A L+++ V + T+Y F+
Sbjct: 9 EALVERH--ARAGRSLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-------LSWEEVE 139
R +Q+C C GCE L E + + + + D ++ E V
Sbjct: 67 T-APPARVTIQMCRAEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVY 125
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C +P + + + +TPE+ + ++
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157
>gi|296159982|ref|ZP_06842802.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
sp. Ch1-1]
gi|295889728|gb|EFG69526.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
sp. Ch1-1]
Length = 161
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ P + VQ+C
Sbjct: 22 SLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFRTQP-AAQVTVQLCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYED 159
C G E L + + G T+ E V C G C +P +M+ +
Sbjct: 81 AEACRSMGTEALARHIETHTGCRFDAEHEHGATVELESVYCLGQCALSPALMLNGTLHAR 140
Query: 160 LTPERLEEIIDA 171
+TP++ + I A
Sbjct: 141 VTPQKFDAIFAA 152
>gi|331086985|ref|ZP_08336060.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409435|gb|EGG88878.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 153
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%)
Query: 23 AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ E+I Y Q ++ +L Q+ +G + A + VA + M + +
Sbjct: 2 EEQIREIIEYYTKEGEMISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
Y L R +Q+C C +G L+++ K + + G
Sbjct: 62 KRY--PSLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C C P +MI Y +T E L EI+ A+
Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153
>gi|213401477|ref|XP_002171511.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|211999558|gb|EEB05218.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 163
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
F S +++ RYP Q A +PLL AQ Q+G +V +AA+ +A++ RV
Sbjct: 4 FDRRSLEIARQLLRRYPKEWAQGATLPLLDLAQRQQGNFVPQAALREIADMTKSTIARVR 63
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
A+ Y +LS G+ V C + C +G + L + + + + D ++ E
Sbjct: 64 ATASQYEYIRLSDSGSPFRV--CTSWMCEEKGAQALRKHAQRE------AKRLDVHINIE 115
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERL 165
C G C +AP++ YE+++ +
Sbjct: 116 SASCLGGCHHAPVLWFQDRLYENMSCSDV 144
>gi|170732344|ref|YP_001764291.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia cenocepacia MC0-3]
gi|254246010|ref|ZP_04939331.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
cenocepacia PC184]
gi|124870786|gb|EAY62502.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
cenocepacia PC184]
gi|169815586|gb|ACA90169.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia cenocepacia MC0-3]
Length = 166
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVECQGACVNAPMVMIG 153
C GCE L + + + D ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERLEEIIDA 171
+ +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALLAD 157
>gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Shewanella woodyi ATCC 51908]
gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Shewanella woodyi ATCC 51908]
Length = 562
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q S +F+E V ++I P + +I L R Q+ G +S I+ +
Sbjct: 18 RATPKGRQLSEGAFNE-----VQQLIKDMPL--RRDLLIEYLHRVQDTFGHLSAPHIKAL 70
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A+ L++ V E+A+FY F L ++VC + C + G +++
Sbjct: 71 ADHLNIGEAEVYEVASFYAHFDLIKEGQTPPPATTLRVCNSLSCTMAGA--------DEL 122
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ + + C G C AP V +G++ + TP +L++ I +
Sbjct: 123 ADELNKTLDNQEVRVLRAPCMGRCNTAPTVALGRNHIDHATPAKLQQAISS 173
>gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
Length = 570
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
E++ V +++ P R +I L Q++ G +S A + +A + M+ V E+A
Sbjct: 37 EDAWDDVRALLADKP--RRADLLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVA 94
Query: 80 TFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
TFY F + +++C + C L G + L + + +
Sbjct: 95 TFYAHFNVVKEGETPPPALTIRICDSLSCELAGAQALKTALEDGLDASE--------VRV 146
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C G C AP + IG + + T E+++++I A
Sbjct: 147 VRAPCMGRCDTAPALEIGHNFVDHATLEQVKQVIAA 182
>gi|221201246|ref|ZP_03574286.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD2M]
gi|221206300|ref|ZP_03579313.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD2]
gi|221173609|gb|EEE06043.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD2]
gi|221179096|gb|EEE11503.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
multivorans CGD2M]
Length = 166
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V + +A L+++ V + T+Y F+ +P R +Q+C
Sbjct: 21 SLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-------LSWEEVECQGACVNAPMVMIG 153
C GCE L E + + + + D ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERLEEIIDA 171
+ +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALLAD 157
>gi|83721159|ref|YP_442162.1| formate dehydrogenase subunit gamma [Burkholderia thailandensis
E264]
gi|257138351|ref|ZP_05586613.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
E264]
gi|83654984|gb|ABC39047.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
E264]
Length = 157
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+PER + + DA
Sbjct: 139 SPERFDALFDA 149
>gi|260588548|ref|ZP_05854461.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583]
gi|260541023|gb|EEX21592.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583]
Length = 158
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
Query: 23 AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ E+I Y R Q ++ +L QE EG ++ E A L + + I
Sbjct: 7 KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVLSCII 66
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
Y L + +C C + +++++ R + ++DG+
Sbjct: 67 KRY--PSLKEADYAHEMVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 124
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C C +P +++ + Y +LT E++ +++
Sbjct: 125 CLKQCRTSPNMLLDGELYANLTKEKVISLLEK 156
>gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
Length = 562
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 23/216 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q + SE V +++ P R + +I L Q++ G +S A I +
Sbjct: 19 RKTPKGRQVDDIALSE-----VQDLLGDRP--RNRDLLIEFLHLIQDKYGHLSAAHIRAL 71
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + + E+A+FY F + ++VC + C L G ++L + + +
Sbjct: 72 AEEMRTGQAEIYEVASFYAHFDVVKEGEAPPPELTIRVCDSLSCELAGAQQLQKALEDGL 131
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ IG + + T E++E A + G
Sbjct: 132 DASQ--------VRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEA---AIAAGDTHAH 180
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
P GG +L D + + +
Sbjct: 181 IPA-YETFADYEAEGGYAALKDLRANGDWEAVQAKV 215
>gi|172059964|ref|YP_001807616.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria MC40-6]
gi|171992481|gb|ACB63400.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria MC40-6]
Length = 166
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNS-------DGTLSWEEVECQGACVNAPMVMIG 153
C GCE L + + + G ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCESLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERLEEIIDA 171
+ +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALLAD 157
>gi|167581038|ref|ZP_02373912.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
TXDOH]
Length = 157
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A IE +A L+++ V + T+Y F+ R +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRT-APPARVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+PER + + DA
Sbjct: 139 SPERFDALFDA 149
>gi|115350951|ref|YP_772790.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria AMMD]
gi|115280939|gb|ABI86456.1| formate dehydrogenase gamma subunit [Burkholderia ambifaria AMMD]
Length = 166
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNS-------DGTLSWEEVECQGACVNAPMVMIG 153
C GCE L + + + G ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERLEEIIDA 171
+ +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALLAD 157
>gi|167619116|ref|ZP_02387747.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
Bt4]
Length = 151
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A IE +A L+++ V + T+Y F+ R +++C
Sbjct: 15 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRT-APPARVTIRLCR 73
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 74 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 132
Query: 161 TPERLEEIIDA 171
+PER + + DA
Sbjct: 133 SPERFDALFDA 143
>gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
SKA53]
gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
SKA53]
Length = 561
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ + + ++ P R + +I L Q+ G +S A + +A + ++ V
Sbjct: 25 QLDDGAMAEILALLGDRP--RRRDLLIEFLHLVQDANGHLSAAHLRALAEEMRLSQAEVY 82
Query: 77 EIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
E+ATFY F + ++VC + C L G + L + +
Sbjct: 83 EVATFYAHFDVVKESETPPPALTIRVCDSLSCELAGAQALKAALEDGLDPAQ-------- 134
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ C G C AP++ IG + + TP +++ I
Sbjct: 135 VRVLRAPCMGRCDTAPVLEIGHNHIDHATPAKVQAAI 171
>gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium nodulans ORS 2060]
gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium nodulans ORS 2060]
Length = 572
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 19/192 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + ++ P R + +I L Q+ G +S + +A+ + +A+
Sbjct: 26 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 83
Query: 73 IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + G A V+VC + C + G E L+ + +I
Sbjct: 84 AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 136
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
G + C G C +AP +G + TPER++ A + G P +D
Sbjct: 137 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKA---AVAAGDTHPHIP-DYVDY 190
Query: 189 ISSAPAGGLTSL 200
+ AGG +L
Sbjct: 191 DAYRAAGGYRTL 202
>gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium nodulans ORS 2060]
gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium nodulans ORS 2060]
Length = 567
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 19/192 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + ++ P R + +I L Q+ G +S + +A+ + +A+
Sbjct: 21 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 78
Query: 73 IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + G A V+VC + C + G E L+ + +I
Sbjct: 79 AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 131
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
G + C G C +AP +G + TPER++ A + G P +D
Sbjct: 132 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKA---AVAAGDTHPHIP-DYVDY 185
Query: 189 ISSAPAGGLTSL 200
+ AGG +L
Sbjct: 186 DAYRAAGGYRTL 197
>gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Methylophaga thiooxidans DMS010]
gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Methylophaga thiooxydans DMS010]
Length = 565
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 20/190 (10%)
Query: 1 MSVRRLAEEEFQP----SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
+S ++L +E P ++ V ++ SR + +I L + Q+ ++
Sbjct: 6 ISAQKLGKELKLPRAVGKGRQVDPKALSEVQALLGD--ESRQKDLLIEHLHKIQDFYHYI 63
Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKL 112
S + +A+ + ++ V E+ATFY F + V+VC + C + G E+L
Sbjct: 64 SAPHLVALAHEMKLSRAEVYEVATFYHHFDVIKEDQTPPPPLTVRVCDSMTCEMLGAEEL 123
Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
I + Q + V C G C AP+ ++G + E ++ E +D
Sbjct: 124 IHSLEQGLGQDVR---------VQRVPCIGRCDKAPVAVVGMNPVEHADAAQVIEFVDK- 173
Query: 173 STGQGDTIRP 182
Q + I P
Sbjct: 174 KQVQPEKIDP 183
>gi|167895369|ref|ZP_02482771.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 7894]
gi|167919994|ref|ZP_02507085.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei BCC215]
Length = 157
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRT-APPAHVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 139 SPARFDALFDA 149
>gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Mycobacterium vanbaalenii PYR-1]
Length = 603
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 11/190 (5%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ V+ R+ + ++ +L Q G + + VA L+ + ++E A+FY
Sbjct: 3 ADIETVLRRHRYDGTR--LLDILWDIQHLFGHIPDEHLPQVATALNRTVLDIVETASFYH 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F +P R + + T + G + + + + + + G E C G
Sbjct: 61 FFHTTP-SGRHRIYLSNTVIAKMNGYQAVHDALELETGARFGGTDEAGMFGLFETACIGL 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT---SL 200
P +++ + LTP + +I+ G+ P + P G+ +L
Sbjct: 120 SDQEPAMLLDGVVFTRLTPGTVADIVAQLKAGRVAADIVNP-----AGLPEDGIAYIDTL 174
Query: 201 LDNNSKKRGK 210
+++ + RG
Sbjct: 175 VESTVRTRGP 184
>gi|167761209|ref|ZP_02433336.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
gi|167660875|gb|EDS05005.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
Length = 155
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 5/153 (3%)
Query: 24 IWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ E+ Y +I +L R QE G+VS+ E VA + + V A
Sbjct: 4 AILQELYDYYKEDHSLSQSELIIAMLTRIQETVGYVSKDVQEEVARLTGVNRGYV--AAI 61
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
L R ++VC + C RG L++ + + KP DG C
Sbjct: 62 IKNLPHLHAQAFRHEIRVCISDRCKARGGSDLLKKLQKLLKIKPGQVTKDGVFLLNTEYC 121
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C++ P + I YE++ +L ++++
Sbjct: 122 MHNCMHGPNIKIDGRIYENVQISQLPQLLEKLR 154
>gi|255659121|ref|ZP_05404530.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
gi|260848566|gb|EEX68573.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
Length = 168
Score = 88.2 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLE 77
E ++ V+ + + ++ +L+ Q + +V +A+ L M + +
Sbjct: 13 SELQERIDLVLESH--DCDPTQIVGILLEVQALNERHYVPEPTAYYIADRLKMRVTNIFD 70
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
FY++ P + +QVC + C + +LI + K DG +
Sbjct: 71 CLKFYSELSPVPR-AKYPIQVCCSPACRVNRVDSHRLISTLERLLDIKLGETTYDGRFTL 129
Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172
E+V C GAC AP V I Y+ L T E++E ++ +
Sbjct: 130 EKVTCIGACDRAPAVRINGHVYDHLDTQEKIETLLRSL 167
>gi|254181074|ref|ZP_04887672.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
1655]
gi|184211613|gb|EDU08656.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
1655]
Length = 157
Score = 88.2 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRT-APPAHVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 139 SPARFDALFDA 149
>gi|91784826|ref|YP_560032.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
xenovorans LB400]
gi|91688780|gb|ABE31980.1| formate dehydrogenase gamma subunit [Burkholderia xenovorans LB400]
Length = 161
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ P + VQ+C
Sbjct: 22 SLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFRTQP-AAQVTVQLCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYED 159
C G E L + + G T+ E V C G C +P +M+ +
Sbjct: 81 AEACRSMGTEALARHIETHTGCRFDAEHQHGATVELESVYCLGQCALSPALMLNGTLHAR 140
Query: 160 LTPERLEEIIDA 171
+TP++ + I A
Sbjct: 141 ITPQKFDAIFAA 152
>gi|167903756|ref|ZP_02490961.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei NCTC 13177]
Length = 146
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +++C
Sbjct: 10 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRT-APPAHVTIRLCR 68
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 69 AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 127
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 128 SPARFDALFDA 138
>gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400]
gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Burkholderia xenovorans LB400]
Length = 610
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 4/150 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
V+ ++ R A++ +L AQ + W+SR + +A L + V +ATFY F
Sbjct: 21 VDALLLR--ARHDPHALVQILREAQARHTWLSRELLGYIAGALGLTLAHVEGVATFYRFF 78
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
V ++G L++ ++ + DG +S + C G C
Sbjct: 79 HT-SPAGEYRVLFSDNITDRMQGNAALLDDLCRRLGVQRGQMREDGRVSVDFCSCTGLCD 137
Query: 146 NAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
P ++I L R+ ++ + +
Sbjct: 138 QGPSLLINHHQVVTRLDAGRVAQLAEFIES 167
>gi|87198756|ref|YP_496013.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|87134437|gb|ABD25179.1| formate dehydrogenase gamma subunit [Novosphingobium
aromaticivorans DSM 12444]
Length = 137
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
+ ++I+ + + Q A++P+L Q G VS AI VA+ L+++ V + +FY
Sbjct: 1 MERLEQIIASH--AGRQGALLPILHDVQAAFGHVSEDAIRAVASALNLSRADVFGVVSFY 58
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
F RA +++C C RG +E ++ P + E V C G
Sbjct: 59 HDF-RQSPEPRAVLKLCRAEACQARG----VEALAAQLPDNPH-------VKIEAVYCLG 106
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C P M + L +L ++++ +
Sbjct: 107 LCSVGPNAMAEGKVHARLDASKLGALVESLA 137
>gi|53724802|ref|YP_102257.1| formate dehydrogenase subunit gamma [Burkholderia mallei ATCC
23344]
gi|67642931|ref|ZP_00441682.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei GB8 horse 4]
gi|76809699|ref|YP_334388.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 1710b]
gi|121599593|ref|YP_993893.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
gi|124386153|ref|YP_001026954.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
10229]
gi|126441142|ref|YP_001059918.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
668]
gi|126449103|ref|YP_001079758.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
10247]
gi|134277771|ref|ZP_01764486.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
305]
gi|166999709|ref|ZP_02265543.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei PRL-20]
gi|167739671|ref|ZP_02412445.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 14]
gi|167830054|ref|ZP_02461525.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 9]
gi|167912019|ref|ZP_02499110.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 112]
gi|217420553|ref|ZP_03452058.1| formate dehydrogenase family protein [Burkholderia pseudomallei
576]
gi|226197898|ref|ZP_03793472.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei Pakistan 9]
gi|254177027|ref|ZP_04883684.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
10399]
gi|254192273|ref|ZP_04898762.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|254203942|ref|ZP_04910302.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
gi|254208922|ref|ZP_04915270.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
gi|254262013|ref|ZP_04953067.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei 1710a]
gi|254360023|ref|ZP_04976293.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
2002721280]
gi|52428225|gb|AAU48818.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
23344]
gi|76579152|gb|ABA48627.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 1710b]
gi|121228403|gb|ABM50921.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
gi|124294173|gb|ABN03442.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei NCTC 10229]
gi|126220635|gb|ABN84141.1| formate dehydrogenase family protein [Burkholderia pseudomallei
668]
gi|126241973|gb|ABO05066.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei NCTC 10247]
gi|134251421|gb|EBA51500.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
305]
gi|147745454|gb|EDK52534.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
gi|147750798|gb|EDK57867.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
gi|148029263|gb|EDK87168.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
2002721280]
gi|157987468|gb|EDO95244.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|160698068|gb|EDP88038.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
10399]
gi|217395965|gb|EEC35982.1| formate dehydrogenase family protein [Burkholderia pseudomallei
576]
gi|225930086|gb|EEH26099.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei Pakistan 9]
gi|238524151|gb|EEP87586.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei GB8 horse 4]
gi|243064207|gb|EES46393.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
mallei PRL-20]
gi|254220702|gb|EET10086.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei 1710a]
Length = 157
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP-PAHVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 139 SPARFDALFDA 149
>gi|126454394|ref|YP_001067206.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
1106a]
gi|167720686|ref|ZP_02403922.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei DM98]
gi|167846782|ref|ZP_02472290.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei B7210]
gi|237813330|ref|YP_002897781.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei MSHR346]
gi|242316557|ref|ZP_04815573.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei 1106b]
gi|254195622|ref|ZP_04902049.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
S13]
gi|126228036|gb|ABN91576.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei 1106a]
gi|169652368|gb|EDS85061.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
S13]
gi|237504647|gb|ACQ96965.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei MSHR346]
gi|242139796|gb|EES26198.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
pseudomallei 1106b]
Length = 157
Score = 87.8 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRT-APPAHVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 139 SPARFDALFDA 149
>gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
Length = 566
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 20/209 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ V E++ P R + +I L Q+ G +S A I +A L
Sbjct: 26 PKGRQLDDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDAYGHLSAAHIRALAEELRTGQ 83
Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E+A+FY F + G A ++VC + C L G E+L + + +
Sbjct: 84 AEIYEVASFYAHFDVVREGETAPPALTIRVCDSLSCELAGAEQLQKALEDGLDASQ---- 139
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + + T E++E I A DT P+ +
Sbjct: 140 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPEYET 190
Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKKDDK 216
++ GG +L D + + +
Sbjct: 191 FAAYEGEGGYATLKDLRANGDWEAVQAKV 219
>gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit
[Silicibacter sp. TrichCH4B]
gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit
[Silicibacter sp. TrichCH4B]
Length = 580
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ + +++ P R + +I L Q++ G++S A I +A +
Sbjct: 40 PKGRQLDDQAHSEILDLLGERP--RDRDLLIEFLHLVQDKFGYISAAHIRALAEEMRTGQ 97
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E+A+FY F + ++VC + C L G E+L + ++
Sbjct: 98 AEIFEVASFYAHFDVVKEGENPPPALTIRVCDSLSCELAGAEQLKKALEEGMNPA----- 152
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + ++ T E++E I + P
Sbjct: 153 ---KVRVLRAPCMGRCDTAPVLEIGHNHIDNATVEKVEAAI----AADDTHVHVPPYEIY 205
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
A AGG L + + + ++ +S
Sbjct: 206 REYAIAGGYEVLKNLRAHGDWEAVQETVLS 235
>gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus
str. Bath]
gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus
str. Bath]
Length = 610
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+N ++ + R ++ +L Q + VS A + VA L + +V + FY+
Sbjct: 11 INRIVENH--GRDTRQLLSILREVQHEFRQVSPEAQQKVAESLGVCITQVRAVVDFYSFL 68
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
P+G + +++ + + G ++ K+ +P DG + C G C
Sbjct: 69 STVPLG-KFDIRISDSITDHMLGSREVAAGLCRKLGIQPGEPRQDGRVGLSFTSCTGLCD 127
Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168
P +I LT +R ++I
Sbjct: 128 QGPAGLINGYAIPRLTEDRTDQI 150
>gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 559
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M+VR L + P E + + E++ R + +I L Q++ G +S A
Sbjct: 1 MAVRELRPRDRGPKGRELDETAWSDIRELLGE--GERRRDLLIEYLHLIQDRFGCLSAAH 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
+ +A + ++ V E+A+FY F + +++C + C L G E LI
Sbjct: 59 LRALAEEMRLSQAEVYEVASFYDHFDVVREGEEKPAPLTIRICDSISCALAGAEALIGEV 118
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
P + C G C AP IG +
Sbjct: 119 SA--GVDPA------AIRVVRAPCMGRCATAPAARIGDREVDH 153
>gi|118116827|ref|XP_001236209.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
Length = 61
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +
Sbjct: 1 IKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPK 58
Query: 182 PGP 184
PGP
Sbjct: 59 PGP 61
>gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72]
gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72]
Length = 602
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
S+++ +L+ Q++ G+++ +A+ VA LD+ V +A FY+ R +
Sbjct: 21 PSSLLQVLIAVQDRLGYLAPSALTEVAAALDLPRAHVEGVAGFYSFLHT-SPAGRYRILF 79
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
++G +L+ K+ +P + DG + C G P ++
Sbjct: 80 ADNVIERMQGSAELMHALCGKLWVEPGRVSEDGLVGVAPTSCIGMGDQGPAALVNGRPIT 139
Query: 159 DLTPERLEEIIDAFS 173
LT R+ EI +
Sbjct: 140 RLTHARINEIAELVR 154
>gi|225569331|ref|ZP_03778356.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM
15053]
gi|225162130|gb|EEG74749.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM
15053]
Length = 154
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 5/153 (3%)
Query: 23 AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
N++ Y + VI +L Q EG + + A E A + + V +
Sbjct: 3 KKEWNDIFDYYREEKTMTQSELVIAVLTELQAIEGCIPKEAREAAAELAGVNPGYVSAVI 62
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
L R ++VC + C +G + +++ + + +P D V
Sbjct: 63 --KRLPHLHEQSFRHEIKVCISDRCKNKGGQDVLKEIQRILKIRPGQVTRDKRFLLTTVY 120
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C C P + I ++++T + I+ +
Sbjct: 121 CMHYCTKGPNIQIDGRLFQNVTAAEVPSILKKY 153
>gi|53720138|ref|YP_109124.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
pseudomallei K96243]
gi|254295607|ref|ZP_04963065.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
406e]
gi|52210552|emb|CAH36535.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei K96243]
gi|157805546|gb|EDO82716.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
406e]
Length = 171
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C
Sbjct: 35 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP-PAHVTIRLCR 93
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + D ++ E V C G C +P + I + + +
Sbjct: 94 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 152
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 153 SPARFDALFDA 163
>gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
2.10]
gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
2.10]
Length = 576
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 23/216 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q +++ V ++I P R + +I L Q++ G +S A I +
Sbjct: 33 RKTPKGRQLE-----DQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRAL 85
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A L + E+A+FY F + ++VC + C L G E L + + +
Sbjct: 86 AEELRTGQAEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ IG + + TPE+++ A +
Sbjct: 146 DASQ--------VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQA---AIAADDTHAH 194
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
P + GG +L D + + +
Sbjct: 195 IPA-YETFAAYEADGGYATLKDLRANGDWEAAQAKV 229
>gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
Length = 576
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 23/216 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q +++ V ++I P R + +I L Q++ G +S A I +
Sbjct: 33 RKTPKGRQLE-----DQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRAL 85
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A L + E+A+FY F + ++VC + C L G E L + + +
Sbjct: 86 AEELRTGQAEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ IG + + TPE+++ A +
Sbjct: 146 DASQ--------VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQA---AIAADDTHAH 194
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
P + GG +L D + + +
Sbjct: 195 IPA-YETFAAYEADGGYATLKDLRANGDWEAVQAKV 229
>gi|331082154|ref|ZP_08331281.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402948|gb|EGG82513.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 153
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 23 AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ E+I Y R Q ++ +L QE EG ++ E A L + +
Sbjct: 2 KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVL--SC 59
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
L V +C C + +++++ R + ++DG+
Sbjct: 60 IIKCYPSLKEADYAHEVVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 119
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
C C +P +++ + Y +LT E++ ++
Sbjct: 120 CLKQCRTSPNMLLDGELYANLTKEKVLSLL 149
>gi|167837457|ref|ZP_02464340.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
thailandensis MSMB43]
Length = 157
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P R +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C G E L+ + + + + G ++ E V C G C +P + I + + +
Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138
Query: 161 TPERLEEIIDA 171
+P R + + DA
Sbjct: 139 SPARFDALFDA 149
>gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
Length = 566
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q +++ V E++ P R + +I L Q+ G +S I +
Sbjct: 23 RKTPKGRQLE-----DQAHSEVLELLGEQP--RSRDMLIEFLHLIQDAYGHLSAPHIRAL 75
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A + + E+A+FY F + ++VC + C L G E+L + + +
Sbjct: 76 AEEMRTGQAEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLQKALEDGL 135
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ IG + + T E++E A ++
Sbjct: 136 DASQ--------VRVLRAPCMGRCDTAPVLEIGHNHIDHATLEKVEA---AIASDDTHAH 184
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
P + GG +L + + ++
Sbjct: 185 IP-DYETFAAYEAEGGYATLKELRGGGNWEAVQEKV 219
>gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
[Mariprofundus ferrooxydans PV-1]
gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
[Mariprofundus ferrooxydans PV-1]
Length = 588
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
R ++ L Q+Q + + +I +A L + ++ + FY+ F SP G R +
Sbjct: 16 RQNDHLLHRLYDLQQQFHHIPQQSIINLATELKLPISQIEGVVDFYSFFHRSPRG-RYDI 74
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
T C G +++ K++ P + +DG++S + C G C P +++ T
Sbjct: 75 LFSNCTSC---GDLAMMQQLCEKLNVSPGNTRADGSVSIDATSCIGMCDQGPALLVNGRT 131
Query: 157 YEDLTPERLEEI 168
L+ +RLE I
Sbjct: 132 ITQLSAQRLEMI 143
>gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Ahrensia sp. R2A130]
gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Ahrensia sp. R2A130]
Length = 570
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 18/189 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + V ++ + +I L Q++ +S A I +A + ++
Sbjct: 18 PKGRQLDDGALANVRALLGD--RKIQRDHLIEYLHLIQDEYKCLSAAHIRALAEEMRLSQ 75
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ V E+A+FY F + P ++VC + CM+ G E L I +
Sbjct: 76 VEVYEVASFYDHFDVVKEGEPEPAPLTIRVCDSITCMMMGAEALHAGLETGIDRNA---- 131
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C GAC AP IG + T ++ ++ +G+ + P D
Sbjct: 132 ----VRVVHAPCMGACDVAPAARIGDREVGNAT---VDGLLAMVESGEIGVLTP-DYKDL 183
Query: 189 ISSAPAGGL 197
+ GG
Sbjct: 184 AAYRAEGGY 192
>gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit
[Thalassiobium sp. R2A62]
gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit
[Thalassiobium sp. R2A62]
Length = 561
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 18/199 (9%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
V ++ P R +I L Q G +S A + +A + M+ V EIATFY
Sbjct: 32 EEVRTLLGDRP--RRSDLLIEFLHLIQGAYGHLSAAHLRALAEEMRMSMAEVYEIATFYA 89
Query: 84 QFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
F + ++VC + C L G ++L + + +
Sbjct: 90 HFDVVKEDEAPPPALTIRVCDSLSCELAGAQQLKAALEDGLDASE--------VRVLRAP 141
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199
C G C AP++ +G ++ T E++E A + G P + GG +
Sbjct: 142 CMGRCDTAPVLELGHAHIDNATVEKVEA---AIAAGDTHAHIP-DYETFDAYVAEGGYAA 197
Query: 200 LLDNNSKKRGKKKKDDKIS 218
L D + + +D ++
Sbjct: 198 LKDLRADGNWEDVQDKILA 216
>gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Mesorhizobium sp. BNC1]
gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Chelativorans sp. BNC1]
Length = 557
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 20/201 (9%)
Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
M RR + P + + + V ++ R + +I L Q++ G +S
Sbjct: 3 MQERR--PRDRGPKGRALDDAALAEVRTLLG--TRERRRDLLIEFLHLIQDRYGCLSARH 58
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVC 116
+ +A + ++ V E+ATFY F + G A ++VC + CML G E LI
Sbjct: 59 LRALAEEMRLSQAEVYEVATFYDHFDVVKEGEAAPPALTIRVCDSVSCMLAGAETLIAEL 118
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+ + C G C AP +G ++ E ++ + G+
Sbjct: 119 QA--------GADPAAIRIMRAPCMGRCAGAPAARVGDR---EVDGATAEGLLGMAAAGE 167
Query: 177 GDTIRPGPQIDRISSAPAGGL 197
++ I + AGG
Sbjct: 168 TG-VKVPEYIGLDAYRGAGGY 187
>gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit
[Methylobacterium extorquens AM1]
gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit
[Methylobacterium extorquens]
gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit
[Methylobacterium extorquens AM1]
Length = 572
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + + E++ P R + +I L Q+ G +S + +A+ + +A+
Sbjct: 25 PKGRQVDPHAKVEIEELLGTRP--RQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + R ++VC + C + G ++L+E + ++
Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C +AP V +G + + ++A + +D
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA----EDTHAHIPTYVDY 190
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ GG +L + G+ DD +
Sbjct: 191 DAYRAGGGYATL---ERLRSGELPVDDVL 216
>gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
Length = 576
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 23/216 (10%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q +++ V E++ P R + +I L Q++ G +S A I +
Sbjct: 33 RKTPKGRQLE-----DQAHSEVLELLGDRP--RNRDLLIEFLHLIQDKFGHLSAAHIRAL 85
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A L + E+A+FY F + ++VC + C L G ++L + + +
Sbjct: 86 AEELRTGQAEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQQLQKALEDGL 145
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP++ IG + + T E++E A +
Sbjct: 146 DASQ--------VRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEA---AIAADDTHAH 194
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
P + GG +L D + + +
Sbjct: 195 VP-DYETFAAYEADGGYATLKDLRANGDWEAVQAKV 229
>gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
sp. MZ1T]
gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
sp. MZ1T]
Length = 585
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 19/187 (10%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + ++ R + +I L Q++ G +S + +A+ + M V E
Sbjct: 30 DPAALAEIEALLGA--AHRERDELIEHLHALQDRFGHLSLRHLRALADWMRMPMAEVYET 87
Query: 79 ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
ATFY F + PV V+VC + PC L G + L +
Sbjct: 88 ATFYAHFDVVREDEPVPPALTVRVCDSLPCQLAGAQALRAA--------LDAALDPARIR 139
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
C G C AP+ +G+ TP ++ A + G D Q R++ A
Sbjct: 140 VLRAPCMGRCDQAPVAQLGRRHLSRATPA---AVLAALARGALDPEPIAWQ--RLADYRA 194
Query: 195 GGLTSLL 201
G +LL
Sbjct: 195 AGGYTLL 201
>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
Length = 562
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/210 (19%), Positives = 81/210 (38%), Gaps = 18/210 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +++ + +++ P R + +I L Q++ G +S A I ++ + +
Sbjct: 22 PKGRQLDDQAHTEILDLLGARP--RDRDLLIEFLHLVQDKFGHISAAHIRALSEEMRVGQ 79
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ E+A+FY F + ++VC + C L G E+L + + ++
Sbjct: 80 AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLKKALEDGMNPAQ---- 135
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP++ IG + + T ++E A ++ P
Sbjct: 136 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATLAKVE---TAIASDDTHAHIP-DYETY 187
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
S A GG L D + ++ +S
Sbjct: 188 ESYAAEGGYAVLQDLRESGDWEAVQEKVLS 217
>gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium chloromethanicum CM4]
gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium chloromethanicum CM4]
Length = 572
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + + E++ SR + +I L Q+ G +S + +A+ + +A+
Sbjct: 25 PKGRQVDPHAKVEIEELLG--TRSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + R ++VC + C + G ++L+E + ++
Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C +AP V +G + + ++A + +D
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA----EDTHAHIPTYVDY 190
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ GG +L + G+ DD +
Sbjct: 191 DAYRAGGGYATL---ERLRSGELSVDDVL 216
>gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas
sp. 3As]
Length = 597
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 22/182 (12%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
RR + QP S ++ V ++I P + +I L +Q + +
Sbjct: 27 RRGKLKGRQPES-----QALAEVQQLIGAGP--HRRDLLIEHLHLINDQWHGLHERHLVA 79
Query: 64 VANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+A ++++ V E+ATFY F + V+VC + C L G L++ +
Sbjct: 80 LARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGANDLLQRLPQLL 139
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ C G C AP+ ++G+ TP+ + E + + +
Sbjct: 140 GAEVR---------VMPTPCVGRCEQAPVAVVGQWPVAHATPDTVRE---SVANRRLQHP 187
Query: 181 RP 182
P
Sbjct: 188 LP 189
>gi|126640813|ref|YP_001083797.1| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
Length = 112
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ +A +L ++ + +ATFY + PVG R + +C + C L G E L E + ++
Sbjct: 1 MNAIAQLLTISVADLEGVATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQREL 59
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ DG + + C G C P +MI +DT+ + ++++++ +
Sbjct: 60 GIQFGQTTQDGRFTLLPICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 111
>gi|170698429|ref|ZP_02889502.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria IOP40-10]
gi|170136682|gb|EDT04937.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria IOP40-10]
Length = 166
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVECQGACVNAPMVMIG 153
C GCE L + + + DG ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGDGADAHAPGDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERL 165
+ +TPE+
Sbjct: 140 GVLHAKVTPEKF 151
>gi|170740590|ref|YP_001769245.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
sp. 4-46]
gi|168194864|gb|ACA16811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
sp. 4-46]
Length = 157
Score = 85.5 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+I+ + ++ + A +P+L QE+ G+V + A+ ++A+ L+++ V TFY
Sbjct: 10 ARAAGIIAEH--AQLEGATLPILHALQERFGYVDQGAVALIADALNLSKAEVHGCITFYH 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ P R V++C C G + L + +DG ++ E V C G
Sbjct: 68 DFRAEP-AGRRVVKLCRAEACQAVGADALHAEILGRYGVGWHGTTADGAVTIEPVFCLGL 126
Query: 144 CVNAPMVMIGKDTYEDLTPE 163
C P ++ L E
Sbjct: 127 CACGPAALVDGAPVARLDAE 146
>gi|238026516|ref|YP_002910747.1| formate dehydrogenase subunit gamma [Burkholderia glumae BGR1]
gi|237875710|gb|ACR28043.1| Formate dehydrogenase, gamma subunit [Burkholderia glumae BGR1]
Length = 162
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ ++SR+ R +++ +L Q++ G+V + +A L+++ V + T+Y F
Sbjct: 8 ADALVSRH--VRAGRSLVAILHAIQDEAGYVPEGCVPPLAKALNLSRAEVHGVLTYYHHF 65
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +P R +Q+C C G E L+E + + + + +G ++ E V C G C
Sbjct: 66 RTTP-PARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDAGH-NGDVALESVYCLGFCA 123
Query: 146 NAPMVMIGKDTYEDLTPERL 165
+P MI + + L+P R
Sbjct: 124 QSPSAMINGEPHARLSPARF 143
>gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
sp. MZ1T]
gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
sp. MZ1T]
Length = 627
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ ++ R+ Q I + ++A++ GW+ A + +A L + RV A+FY+
Sbjct: 3 AELETILERHRRDPLQLLQILIELQARD--GWLPPATLSALAGALGIPRARVESTASFYS 60
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
P + + G + L++ +K+ +P + DG C G
Sbjct: 61 FLHTRP-AGEYRILFSDNITDRMLGNQALMQTLCDKLWLQPGKVSEDGLARVSTTSCTGM 119
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C P ++ T LT ER++E+
Sbjct: 120 CDQGPALLANGRTITRLTLERIDEMAHLIR 149
>gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
[Acidovorax ebreus TPSY]
gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Acidovorax ebreus TPSY]
Length = 661
Score = 85.1 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVI-SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
R+ + QP + V +I +R P + +I L ++ G + +
Sbjct: 24 RKAHLKGRQPE-----ASALAEVQTLIGARPPEGYARDRLIEHLHLINDRHGALYERHLV 78
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPV---GTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A ++++ V E+A+FY F++ R ++VC C + G + L+ +
Sbjct: 79 ALARLMNLPMAEVYEVASFYHHFEVLRDADGPPRLVLRVCNGLSCCMAGADALLAELPGR 138
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ G + + C G C AP+ ++
Sbjct: 139 LSAAGH-----GDVRVQAAPCVGRCEQAPVAVV 166
>gi|226323627|ref|ZP_03799145.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
gi|225207811|gb|EEG90165.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
Length = 103
Score = 84.8 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVE 139
FY F P G + ++VC T C +R ++E ++ H + D + E V
Sbjct: 5 FYENFSFEPKG-KYVIKVCDGTACHVRKSIPILEALYKELGLNEHKHTSDDMLFTVETVS 63
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
C GAC AP + + + + ++PE++ ++++ + +
Sbjct: 64 CLGACGLAPAITVNDEVHPKMSPEKVIKLLEELRGEENE 102
>gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Thiomonas intermedia K12]
gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Thiomonas intermedia K12]
Length = 626
Score = 84.4 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 1 MSVR---RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
MS R R + QP ++ V ++I P + +I L R +Q +
Sbjct: 21 MSGRARRRGKLKGRQPE-----PQALAEVQQLIGAGP--HRRDLLIEHLHRINDQWHGLH 73
Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
+ +A ++++ V E+ATFY F + V+VC + C L G L++
Sbjct: 74 ERHLVALARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGASDLLQ 133
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ + C G C AP+ ++G+ TP+ + E + +
Sbjct: 134 RLPQLLGAEVR---------VMPTPCVGRCEQAPVAVVGQWPVAHATPDAVRE---SVAN 181
Query: 175 GQGDTIRP 182
+ P
Sbjct: 182 RRLQHPLP 189
>gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Methylobacterium extorquens PA1]
gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta
[Methylobacterium extorquens DM4]
gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium extorquens PA1]
gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit
[Methylobacterium extorquens DM4]
Length = 572
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + + E++ SR + +I L Q+ G +S + +A+ + +A+
Sbjct: 25 PKGRQVDPHAKVEIEELLG--TRSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + R ++VC + C + G ++L+E + ++
Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C +AP V +G + + ++A + +D
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA----EDTHAHIPTYVDY 190
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ GG +L + G+ DD +
Sbjct: 191 DAYRAGGGYATL---ERLRSGELPVDDVL 216
>gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacter tundripaludum SV96]
gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacter tundripaludum SV96]
Length = 609
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+ ++ +L + Q + ++ AAIE ++ +L++ +++ + FY+ F L+P G
Sbjct: 12 SHYQATHLLQILRQIQSRYHYIPEAAIEQLSGLLNIPRTQIIGVVEFYSFFHLAPRGQ-Y 70
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ + + + G + L + K+ DG +S + C G C P ++
Sbjct: 71 ELLISDSITDHMLGKKDLFDYLAKKLDVAVGEVREDGVVSLDNTSCTGMCDQGPAGLVNG 130
Query: 155 DTYEDLTPERLEEIIDAFSTGQG 177
L +++I + + +
Sbjct: 131 LALTRLDQSGIDKIAELINQQKP 153
>gi|300245947|gb|ADJ94031.1| putative benzoate-degrading protein BamG [Clostridia bacterium
enrichment culture clone BF]
Length = 129
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+ + I TFY QF+L P+G +QVC T C L EK+ E + + K H
Sbjct: 1 MTGFPTSVLYSIVTFYAQFRLEPIGD-NLIQVCHGTACHLADAEKISEAIQLESGAKSGH 59
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ DG + E+V C G C P++ + ++TY ++PE ++I G
Sbjct: 60 TSPDGKFTVEKVACLGCCSLGPVITVNEETYARMSPEAARKLIKQRKKG 108
>gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
TrichSKD4]
gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
TrichSKD4]
Length = 537
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V +++ P R + +I L + Q+ +S A + +A+ + ++ V E+A+FY
Sbjct: 3 LEEVQKLLQDEP--RRRDLLIEHLHKIQDAYDHLSAAHLRALADEMRLSQAEVYEVASFY 60
Query: 83 TQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
F + G A ++VC + C L+G + L +V + ++V
Sbjct: 61 HHFDIVKEGQAAPAPLTIRVCDSVACSLKGADSLAKVL--------GETLDPAKIRIQKV 112
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT 198
C G C +AP V +GK ++ + ++ A G + P ++ + GG
Sbjct: 113 PCIGRCASAPTVQVGKRAVDNASELSVKA---AVFEGASEAEVPA-YVNLEAYRKDGGYQ 168
Query: 199 SLLDNNSKKRGKKKKDDK 216
L D S K G D+
Sbjct: 169 KLEDVRSGKVGALDIADQ 186
>gi|325263882|ref|ZP_08130615.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5]
gi|324030920|gb|EGB92202.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5]
Length = 162
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 5/154 (3%)
Query: 21 ESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E+ Y Q ++ +L QE G ++ E VA++ + V
Sbjct: 5 DKRKRAEEIFEYYGALENRGEQDVIVAMLRELQEVYGCITAGTAERVADVAGVKGAFVRA 64
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ Y L + VC C +G + +V + + + + DG +
Sbjct: 65 LVRMY--PTLKEAAFLHEIIVCMGKTCSEKGGRDIYKVLQRVLKVRGNGISRDGKVRVRT 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C C AP ++I Y +T E+L I+
Sbjct: 123 QSCLKHCGTAPNMLIDGKLYTGVTQEKLMGILKN 156
>gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa]
Length = 107
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+
Sbjct: 40 VHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMN 99
Query: 63 VVANILDM 70
VA +L +
Sbjct: 100 KVAEVLQV 107
>gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Methylobacterium sp. 4-46]
gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium sp. 4-46]
Length = 572
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + ++ P R + +I L Q+ G +S + +A+ + +A+
Sbjct: 26 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAF 83
Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + G A V+VC + C + G E+L+ + +I +
Sbjct: 84 AEVFETATFYAHFDVVKEGEAAIPALTVRVCDSLTCAMHGAEELLAALQAEIGAQVRVVR 143
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ C G C +AP +G + T E + + A
Sbjct: 144 A---------PCVGLCDHAPAAEVGHNFLHRATVETVRAAVAA 177
>gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 600
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ S V +I P + +I L + + + + +A +++ V E+
Sbjct: 37 DDASVAEVRALIGAAP--HRRDLLIEHLHKLNDAYRCLHDRHLVALAKEMNIPMAEVYEV 94
Query: 79 ATFYTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
ATFY F++ V+VC C + G + L+ + + + +
Sbjct: 95 ATFYHHFEVVRGDETVPQLTVRVCDGLSCEMAGAKDLLARLPSLLGNE--------DVRV 146
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
C G C AP ++ + T E + +++ G
Sbjct: 147 IPAPCIGRCEQAPAAVVHQHPVPRATVESIAQLVKDAKGGHP 188
>gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
Length = 620
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ V+ L ++ GW+S A+ + L ++ V +ATFY F +P R V
Sbjct: 52 QRHLVMEALHAVNDRVGWISPGALNYIGKRLSVSAADVYSVATFYGLFSTNPRPKR-VVH 110
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---MVMIGK 154
VC CM RG ++L K+ W+ C G C AP V G
Sbjct: 111 VCTDIACMARGSKELCASLEKKLGPASAMTG------WKHSPCLGVCERAPAALAVEAGD 164
Query: 155 DTYEDLT-PERLEEIIDAFSTG------QGDTIRPGPQID 187
+E L P ++E++ A + G + I PQ
Sbjct: 165 PPHEHLIGPATMDEVVLALNDGPEALAAEAPPIMAVPQAG 204
>gi|171316164|ref|ZP_02905388.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria MEX-5]
gi|171098673|gb|EDT43468.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
[Burkholderia ambifaria MEX-5]
Length = 166
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V + +A L+++ V + T+Y F+ R +Q+C
Sbjct: 21 SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRT-APPARVTIQMCR 79
Query: 101 TTPCMLRGCEKLIEVCRNKIHQ-------KPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
C GCE L + + ++ G ++ E V C G C +P + +
Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGEGADAHAPGDVALESVYCLGLCAQSPSMTVN 139
Query: 154 KDTYEDLTPERL 165
+ +TPE+
Sbjct: 140 GVLHAKVTPEKF 151
>gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Variovorax paradoxus S110]
gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Variovorax paradoxus S110]
Length = 612
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 19/182 (10%)
Query: 3 VRRLAE-EEFQPSSFSFSEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAA 60
+RR ++ + QP E + + V +I P + +I L + + +
Sbjct: 36 IRRKSKLKGRQPD-----EAALVEVRTLIGARPAEGHRRDLLIEHLHKLNDAFRCLHDRH 90
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCR 117
+ +A +++ V E+ATFY F++ A V+VC C L G L+
Sbjct: 91 LVALAREMNIPMAEVYEVATFYHHFEVVRGDEAAPGLTVRVCDGLACELAGARDLLARLP 150
Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
+ + G + C G C AP V + + T ++ + A +
Sbjct: 151 ELLGVEG------GDVRVIAAPCIGRCEQAPAVAVDRQAVPLATTAKV---LQALKSDPE 201
Query: 178 DT 179
+
Sbjct: 202 EA 203
>gi|218260382|ref|ZP_03475731.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
DSM 18315]
gi|218224553|gb|EEC97203.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
DSM 18315]
Length = 92
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ + VC T C +RG EK+++ + ++ K DG S + + C GAC AP
Sbjct: 3 TPKGKYPISVCLGTACYVRGAEKVLDEFQRQLEIKVGETTPDGLFSLDCLRCVGACGLAP 62
Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
+V I Y LTPE++ +I+ +
Sbjct: 63 VVTIAGKVYGRLTPEKVRDILSEY 86
>gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
HTCC2516]
gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
HTCC2516]
Length = 561
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 17/174 (9%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + V ++ P R + +I L Q++ G++S A + +A L +
Sbjct: 21 PKGRQLDDAALEEVRALLG--PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQ 78
Query: 73 IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E+A+FY F L ++VC + C L G E L+ +
Sbjct: 79 AEVWEVASFYAHFDLVKEDELPPPALTIRVCESLSCELAGAEALLAALEEGLDPAE---- 134
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ C G C AP++ +G + TPE ++ G+ + P
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHRHIDHATPETARAAVE---AGETHPVIP 181
>gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium populi BJ001]
gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium populi BJ001]
Length = 572
Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P ++ + + ++ SR + +I L Q+ G +S + +A+ + +A+
Sbjct: 25 PKGRQVDPQAKVEIEGLLG--TRSRQRDLLIEHLHLVQDTYGQISADHLAALADEMSLAF 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + R V+VC + C + G + L+E + ++
Sbjct: 83 AEVFETATFYAHFDVVKEGEANIPRLTVRVCDSITCAMFGADALVETLQRELASDA---- 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ C G C +AP V +G + + ++A
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA 177
>gi|312795434|ref|YP_004028356.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
[Burkholderia rhizoxinica HKI 454]
gi|312167209|emb|CBW74212.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) (EC
1.2.1.2) [Burkholderia rhizoxinica HKI 454]
Length = 192
Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G++ + I +A ++++ V + T+Y F+ VQ+C
Sbjct: 38 SLLSVLHAIQDDAGYIPDSVIAPLAQAMNLSRAEVHGVITYYHHFRT-SPPAAVTVQLCR 96
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---------------WEEVECQGACV 145
C G E L + + + C G C
Sbjct: 97 AESCRAMGSEALARHAETRTGHRFDACRHGDDHRAAPPAAPLAGHPAVELQSAYCLGLCS 156
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
+P +M+ Y +TPE+L+ ++ A
Sbjct: 157 TSPAMMVNGKPYARVTPEKLDTVLAA 182
>gi|169825064|ref|YP_001692675.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
29328]
gi|167831869|dbj|BAG08785.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
29328]
Length = 159
Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++E + + + A + + Q+ G VS + + +A D+ + I F
Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFDIDEKYIKTIIKF- 69
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + C C G ++++ + ++ ++DG + C
Sbjct: 70 -IPSIKESKVEYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C + P +MI Y + E+ +E+++
Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159
>gi|255019942|ref|ZP_05292016.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
ATCC 51756]
gi|254970601|gb|EET28089.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
ATCC 51756]
Length = 129
Score = 82.1 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
+ QE G++ A+ A+ + ++V E+ +FY L R +++C + C
Sbjct: 1 MRLLQEALGYIDDEALHYAADCTGLTPVQVEELCSFYPLV-LRRPAGRHLLRICDSVACH 59
Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
L G +L+ + G S C G C AP V++ +P L
Sbjct: 60 LAGAPELVRRAEAISGVRLGQVAGAGHYSILPHVCLGLCDRAPAVLVDGRAVGGFSPTAL 119
Query: 166 EEIIDAFSTG 175
E+++ + G
Sbjct: 120 EQLLAEWEQG 129
>gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15]
Length = 571
Score = 81.7 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGT 92
R + +I L Q+ +G++S A + +A+ +++ V E ATFY F +
Sbjct: 42 RHRDRLIEHLHLIQDADGYLSMARLRALASFMNLPMADVYETATFYAHFDVVHDEQTPPP 101
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++VC + C L G +H+ + C G C AP+V +
Sbjct: 102 AITLRVCDSLSCQLAGASA--------LHKTLADGTDPAQVRVVHAPCMGRCDTAPVVAV 153
Query: 153 GKDTYEDLTPERLEEIIDA 171
G + T E + ++
Sbjct: 154 GHHHVGNATAETVGAAVEQ 172
>gi|302379485|ref|ZP_07267972.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
gi|303234257|ref|ZP_07320902.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
gi|302312830|gb|EFK94824.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
gi|302494621|gb|EFL54382.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
Length = 159
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++E + + + A + + Q+ G VS + + +A ++ + I F
Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKF- 69
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + C C G ++++ + ++ ++DG + C
Sbjct: 70 -IPSIKESKVEYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C + P +MI Y + E+ +E+++
Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159
>gi|160941290|ref|ZP_02088627.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC
BAA-613]
gi|158435851|gb|EDP13618.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 8/158 (5%)
Query: 19 SEESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+E E++ Y P Q A++ +L Q+ G +S +E A + V
Sbjct: 6 NEARDDQTREILDYYRGLPERSSQEAIVEMLRELQDIHGCISPYMLEQAAEAAGVRDSMV 65
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
I Y L + +C C +G +++ + ++ + DGT+
Sbjct: 66 QAICKRY--PSLKTAPYNHEIILCTGRNCASKGSITVMDELKKRLGVGKNGISEDGTVCL 123
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ C C AP VM+ L E I+
Sbjct: 124 KTRNCLKNCRKAPNVMVDGRLCSGLDAE---GILRELK 158
>gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Methylobacterium radiotolerans JCM 2831]
Length = 572
Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 21/209 (10%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P + + + E++ SR + +I L Q+ G +S + +A+ + +A+
Sbjct: 25 PKGRQVEPRAKVEIEELLGS--RSRQRDLLIEHLHLIQDTFGQISAEHLAALADEMALAF 82
Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + G A V+VC + C + G ++L+E + ++
Sbjct: 83 AEVFETATFYAHFDVVKEGDAAIPRLTVRVCDSITCAMFGADELLETLQRELASDA---- 138
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C +AP V +G + + ++ G P +D
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHKADLASVRAAVE---AGDTHAHVP-DYVDY 190
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ AGG +L + + G DD +
Sbjct: 191 DAYRAAGGYATL---DRLRSGDLPVDDIL 216
>gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
sp. 1NLS2]
gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
sp. 1NLS2]
Length = 616
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ V+ L ++ GW+S A+ + L +A V +ATFY F + + V
Sbjct: 50 RRHLVMEALHAVNDRVGWISPGALNYIGKRLGIAAADVYSVATFYAMFST-NMRPKRIVH 108
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---MVMIGK 154
VC CM RG +++ ++ W+ C G C AP V G
Sbjct: 109 VCTDIACMARGSKEVCADLEKRLGPAGAMSG------WKHSPCLGVCERAPAALAVEAGD 162
Query: 155 DTYEDLT-PERLEEIIDAFSTG------QGDTIRPGPQID 187
+E L P +E++ A + G + PQ
Sbjct: 163 PPHEHLIGPATADEVVLALNNGPVALAAEAPPGMAVPQAG 202
>gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
Marseille]
gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
Marseille]
Length = 567
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 19/196 (9%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ P + V E++ SR +I L + Q++ G ++ + + +A +
Sbjct: 20 KRQAPKGRRVDPAALAEVRELLGD--ESRQADLLIEHLHKIQDKFGHLASSHLAALAQEM 77
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
+A V E+A+FY F + G A V+VC C + G + L+ + ++
Sbjct: 78 RLAQTEVYEVASFYHHFDIVKEGDAAPQALTVRVCDGLSCEMAGAKDLLAKLPKILGKEV 137
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
+ C G C AP+ ++G++ + T E ++ ++ + G
Sbjct: 138 RVIAA---------PCVGRCEQAPVAVVGQNPVINATCEAVQTAVEK----KEIVQAEGS 184
Query: 185 QIDRISSAPAGGLTSL 200
D + GG L
Sbjct: 185 ITDFSAYQNEGGYALL 200
>gi|297586998|ref|ZP_06945643.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
53516]
gi|297574979|gb|EFH93698.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
53516]
Length = 159
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 3/151 (1%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++E + + + A + + Q+ G VS + + +A ++ + I F
Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKF- 69
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + C C G ++++ + ++ ++DG + C
Sbjct: 70 -IPSIKESKVEYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C + P +MI Y + E+ +E+++
Sbjct: 129 KCKDGPNIMINGKLYHHMDAEKTKEVLEKIK 159
>gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 219
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 6 LAEEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+ E QP +F S + Y R +A I L Q+Q GWV AI
Sbjct: 106 IMHENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYA 163
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A++L + V +ATFY+Q PVG R ++ C + C + G + + K
Sbjct: 164 IADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALGKK 218
>gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Nitrosococcus halophilus Nc4]
gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Nitrosococcus halophilus Nc4]
Length = 564
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
R + Q F + + ++ P R +I L + Q+ +S A I +
Sbjct: 19 RPTPKGRQ-VDFK----ALEEIRALLGDSP--RRADLLIEFLHQIQDTYHHISAAHIAAL 71
Query: 65 ANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
A L ++ V E+ATFY F + V+VC + C + G + LI + +
Sbjct: 72 ARELKLSQTEVYEVATFYHHFDVIKEGESPPPPLTVRVCDSVTCEIGGAKTLIAELKAVL 131
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
+ + ++V C G C AP+ ++G +
Sbjct: 132 GE---------GVRVQKVPCVGRCEQAPVAVVGVNPIGH 161
>gi|269119260|ref|YP_003307437.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
[Sebaldella termitidis ATCC 33386]
gi|268613138|gb|ACZ07506.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
[Sebaldella termitidis ATCC 33386]
Length = 150
Score = 79.4 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 58/152 (38%), Gaps = 6/152 (3%)
Query: 23 AIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
+ ++I+ Y + + +L Q Q G + + +A + + V E+
Sbjct: 1 MENIKDLINNYLLVKKDDTDLFDVLHFVQSQIGCIPEDIQKFIAARMCLELSEVHEVIEI 60
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ FQ + V VC + C ++G +++ + ++ + D ++ C
Sbjct: 61 SSSFQEKKQIS---VTVCSGSGCTMKGSMEILGIISKELGVNLN--DEDKSVFLTVKNCF 115
Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
AC + + + + ++T L +++
Sbjct: 116 KACSYGVNIEVNGELFHNVTVSTLGRVLEKIK 147
>gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
USDA 110]
gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110]
Length = 567
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
P +A + +++ P R + +I L Q++ +S A + +A+ + +A+
Sbjct: 25 PKGRQVDPTAAHEIEQLLGDRP--RRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLAF 82
Query: 73 IRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
V E ATFY F + P ++VC + C + G +L++ +
Sbjct: 83 AEVFETATFYAHFDIVKEGEPDIAPLTIRVCDSLTCEMLGGGQLLQDLQRSAGP------ 136
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
+ C G C AP+ +G T E++ + G P +D
Sbjct: 137 ---GIRVVRAPCVGLCDAAPVAEVGHHFVHQATAA---EVLATAARGDVHAHIPA-YVDY 189
Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
+ GG L + G KDD +
Sbjct: 190 DAYVQDGGYKLL---ERLRSGAVSKDDIL 215
>gi|326386801|ref|ZP_08208421.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208720|gb|EGD59517.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 142
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+ E+I+ + + + ++P+L Q + G VS A +A L+++ V + +FY
Sbjct: 5 ERIAEIIADH--TGREGPLLPILHDVQTEFGHVSPEAEGQIALALNLSRAEVHGVVSFYH 62
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F R V++C C RG E L+ + + V C G
Sbjct: 63 DF-REAPDPRPCVELCRAEACQARGVEALVAAAEDAAGSRVR---------LATVYCLGL 112
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C P +G+ + L ++L ++I+A
Sbjct: 113 CSVGPSARVGERLHARLDADKLVKVIEAAR 142
>gi|167769022|ref|ZP_02441075.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM
17241]
gi|167668662|gb|EDS12792.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM
17241]
Length = 157
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 5/156 (3%)
Query: 20 EESAIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
+ E+++ Y R Q +I LL Q G V AA A + A V
Sbjct: 3 PFEQEQLQELLTYYKSIRETGGQELLIALLREIQSLCGCVPPAAQAAAAAAMKTAPAAV- 61
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
A L+ + VC C +G +++ + K DG +
Sbjct: 62 -AALVKRLPGLNAAPYAHRIVVCTGPRCAAKGGAAVLKAFETALGIKAGQVTDDGRFLLD 120
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C C +AP I D ++ + P+ + EI+ +
Sbjct: 121 TQNCLKQCGSAPNTRIDNDLFKQVAPDLVPEILAQY 156
>gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s]
Ferredoxin Involved In The Nadp-Reducing Hydrogenase
Complex
Length = 85
Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ + VC T C ++G +K++ + ++ DG S + + C G C AP+
Sbjct: 3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPI 62
Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
VM+G+ Y ++TP ++++I+
Sbjct: 63 VMVGEKVYGNVTPGQVKKILAE 84
>gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 656
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+SR A++ + L + +A+FY F L R V
Sbjct: 51 RRDLLLPALHAVNDRVGWISRPALDHICRRLTVPPAEAYAVASFYAMFALRRRPRR-VVH 109
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+C C G +++ ++ H DG +W E C G C AP +
Sbjct: 110 LCTDIACAAAGSDRMRARLTERLGPPGGH---DGEAAWHESPCLGMCERAPAALA 161
>gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia
eutropha H16]
gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia
eutropha H16]
Length = 569
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 23/206 (11%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ QP + V + P R + +I L ++ G ++ + +A+ L
Sbjct: 18 KRRQPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASEL 75
Query: 69 DMAYIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++ V E+ATFY F + V+VC C L G + LI+ +
Sbjct: 76 RLSMTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALL 135
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ + C G C AP ++G++ + T E ++ + A +
Sbjct: 136 GTEVRVVAA---------PCIGRCEKAPAALVGQNPVDTATAEAIDAAVQA----KAVRH 182
Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
P P I + GG L S
Sbjct: 183 APEPYIGYDAYRKDGGYALLKSLASG 208
>gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
proteobacterium BAL199]
gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
proteobacterium BAL199]
Length = 582
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 15/151 (9%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ V ++ P R + +I L Q++ G +S + +A+ + +A V E+
Sbjct: 47 DPAALDEVRFLLGDAP--RRRDLLIEHLHAVQDKFGHLSARHLAALAHDMRLAMAEVWEV 104
Query: 79 ATFYTQFQLSPV----GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
ATFY F + V+VC + C L G EK+++ ++ +
Sbjct: 105 ATFYAHFDVVKEDAAAPPAVTVRVCDSLSCALAGAEKVLDTLQSGSGSDVRVIRA----- 159
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
C GAC AP+ +G E +
Sbjct: 160 ----PCMGACDKAPVAAVGHHLVEHADAASV 186
>gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Acidovorax delafieldii 2AN]
gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Acidovorax delafieldii 2AN]
Length = 657
Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIE 62
R+ + QP +E + ++ P + +I L R + G + +
Sbjct: 7 RKSRLKGRQPEDAEMTEVAL-----LLGTRPAAGYRRDLLIEYLHRINDHFGVLHDRHLV 61
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
+A +++ V E+A+FY F++ R ++VC + C + G +L+
Sbjct: 62 ALAKQMNLPMAEVYEVASFYHHFEIVRGEGAQAPRLVLRVCDSLSCSMAGARELLAALPE 121
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
++ PL + + V C G C AP+ ++ + T + + E +++
Sbjct: 122 RLRAMPLGGGQC-DVQVQAVPCVGRCEQAPVAVVHQCPVPHATVDAVLETVNS 173
>gi|210612660|ref|ZP_03289408.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787]
gi|210151462|gb|EEA82470.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787]
Length = 158
Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 24 IWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ E+ S Y P Q V+ LL Q+ G++S E V + ++ + +
Sbjct: 8 DEIEEIFSYYSQQPDKGSQEMVVALLRELQDAHGFISLELKERVEQVTGVSPNYLKCLIR 67
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
Y L T + C C + ++ + ++ + + DG C
Sbjct: 68 MY--PTLKEENTVHEIIACTGERCGKKEGGAILNALKRELRIQKNGVSIDGKFKLRTQNC 125
Query: 141 QGACVNAPMVMIGKDTY 157
C AP ++I Y
Sbjct: 126 LKKCGTAPNIIIDDVVY 142
>gi|317970223|ref|ZP_07971613.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
CB0205]
Length = 145
Score = 76.7 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
++ V+ R+ A++ +L AQ+ G +S + + VA +L + RV A+FY
Sbjct: 6 DALDPVLRRH--GYQAEALLEVLAAAQQIYGHLSPSLLRHVAGLLRLPLSRVQGTASFYH 63
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+L R VC T C ++G L + + + Q S V C G+
Sbjct: 64 LFRL-SPPPRHQCLVCTGTACHVQGAGLLFKALQTTLKQPWCELGS--------VRCIGS 114
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
C P++++ D + T +
Sbjct: 115 CSGGPLLVVDGDIWTHQTSATALAGLRRLK 144
>gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1]
gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Alkalilimnicola ehrlichii MLHE-1]
Length = 563
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 25/204 (12%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
RR +P V V PP+R +I L Q+ G + +
Sbjct: 14 RRSQPRGRRPR-----PADIRAVRAVSGGLPPTR--DLLIEHLHCLQDHYGHLKAEHLVA 66
Query: 64 VANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
+A+ L++A V E+ATFY F + V+VC C L G + L++
Sbjct: 67 LAHELNLAPAEVYEVATFYHHFDVVHDNAAPPPPITVRVCDAIGCALSGADDLVQALEAG 126
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ DG + + V C G C AP+ ++G + + ++ I + +
Sbjct: 127 LG--------DG-VRVQRVPCVGRCDQAPVAVVGCNPVGQASLATVQARIAQ-RALRPEL 176
Query: 180 IRPGPQIDRISS-APAGGLTSLLD 202
G R S+ AGG L D
Sbjct: 177 P-AGTV--RYSAYRAAGGYRVLAD 197
>gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
Length = 573
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V ++ P + + +I L + Q+ G + + + +A L ++ V E+ATF
Sbjct: 31 DMSEVLAILG--PGAHRRDLLIEYLHQLQDHLGCLPKTHLSALAECLKLSQTEVFEVATF 88
Query: 82 YTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
Y F + V V+VC C + G E+LIE + T+ +
Sbjct: 89 YHHFDVVESKNAVNHTLTVRVCNGPSCCMAGAEELIEKLPTLLG---------STVRVQA 139
Query: 138 VECQGACVNAPMVMIGKD 155
V C G C AP V +G+
Sbjct: 140 VPCIGRCEQAPAVAVGQH 157
>gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
Length = 588
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 3/154 (1%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++ A + + Y + ++ +L Q + + AI+ +A L ++ ++ +
Sbjct: 2 NKALATLIQAQVKVYRGD--PTYILQILRHIQFSCSHIPQQAIQQLATTLSISIPKIRAL 59
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
FY P G + + + + G ++ K++ K +DG ++
Sbjct: 60 IEFYHFLHYHPRGD-YDIYISDSIIDHMSGKNEISNYLCEKLNVKLNQPRADGRVTVSNT 118
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C G P +I LT +++++I+
Sbjct: 119 SCTGMSDQGPAALINGLALTRLTRKKVDQIVTKI 152
>gi|318041124|ref|ZP_07973080.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
CB0101]
Length = 152
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
QP S E +N V+ R+ +I +L AQ+ G +S + +A L +
Sbjct: 3 QPQS---GAELYEGLNSVLQRH--GHQAHGLIEVLNHAQQLYGHLSEPLLRHIARQLQLP 57
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+ RV A+FY F+ R VC T C + G +L+ RN ++
Sbjct: 58 FSRVQGTASFYHLFRFKA-PARHSCLVCTGTACHVLGAAQLLADLRNAAMEELG------ 110
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ V C G C AP+V++ + + L+ + + +
Sbjct: 111 -VELGSVRCIGTCSGAPLVVVDGEVWNHLSSAAVLKRLREL 150
>gi|310778150|ref|YP_003966483.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
gi|309747473|gb|ADO82135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
polytropus DSM 2926]
Length = 154
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 4/152 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++E + I R + + +L ++ G++ E +A+ + + +
Sbjct: 3 TKEFYQNLENFIGEMEDKRNE---VQVLNFVMKEIGYIPLEVQEFIADKTGLFLVTIQNA 59
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
F+ +++ + ++VC C +G ++E K+ + D
Sbjct: 60 IDFFPRYKT-SIDNTVEIKVCTGLGCTGKGGLLILEELEKKLGIEAGETTKDKKYRLTTQ 118
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
C G C P + IG Y ++ E LE++I
Sbjct: 119 RCFGKCAKGPNLSIGGVLYNNVNIENLEKLIK 150
>gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
[Variovorax paradoxus EPS]
gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Variovorax paradoxus EPS]
Length = 595
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 19/171 (11%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
R+ + QP + V ++ P + +I L R ++ + +
Sbjct: 25 RKGKLKGRQPDHVA-----LEEVQALLG--PGPHRRDLLIEHLHRLNDEWQCLHDRHLVA 77
Query: 64 VANILDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+A +++ V E+ATFY F++ V+VC C L G L++ +
Sbjct: 78 LAREMNLPMAEVFEVATFYHHFEVLRGDDQPAALTVRVCDGLSCELAGARDLLQRLPAML 137
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ C G C AP+ +IG+ T ++ +D
Sbjct: 138 GADVRVIAA---------PCVGRCEQAPVAVIGQAPVVRATAANVKAAVDQ 179
>gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
Length = 540
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 18/203 (8%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+ + V +++ P R + +I L + Q+ G + + +A+ + ++ + V E+
Sbjct: 2 DDAALDEVRKLLGDEP--RRRDLLIEHLHKIQDAFGCLEARHLRALADEMRLSQVEVYEV 59
Query: 79 ATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
A+FY F + V+VC + C L+G + L P
Sbjct: 60 ASFYHHFDIVREGDVRPAPLTVRVCDSVACALKGADALAAALEA--GVDPAKVR------ 111
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
++V C G C AP V +GK ++ + + A G D P I S A
Sbjct: 112 IQKVPCIGRCAGAPAVQVGKRAIDNASEVSVRA---ALFEGNSDPAVP-DYIKLDSYRAA 167
Query: 195 GGLTSLLDNNSKKRGKKKKDDKI 217
GG L + + + DK
Sbjct: 168 GGYALLERVRAGELDAVEIADKA 190
>gi|307697991|gb|ADN86365.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
Length = 91
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
++ PVG + +C PC L G ++ E + K+ DG + +E EC GA
Sbjct: 1 MYETVPVGQ-HKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59
Query: 144 CVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
C +AP+V++ ++ E+++++++
Sbjct: 60 CGDAPVVLLNNHRMCSFMSREKIDQLLEEL 89
>gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42]
gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Acidovorax sp. JS42]
Length = 640
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 3 VRRLAE-EEFQPSSFSFSEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAA 60
+RR + + QP + + V +++ P + +I L R + G +
Sbjct: 26 IRRTSRLKGRQPE-----DAAMADVAQLLGPRPADGYRRDLLIEYLHRLNDHFGVLHDRH 80
Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVC 116
+ +A +++ +V E+A+FY F++ R V+VC + C + G +L+E
Sbjct: 81 LVALARQMNLPMAQVYEVASFYHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGARELLEAL 140
Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ G + V C G C AP+ ++
Sbjct: 141 PARL-----QAAGQGDVQVVAVPCVGRCEQAPVAVV 171
>gi|119504733|ref|ZP_01626811.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium
HTCC2080]
gi|119459338|gb|EAW40435.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium
HTCC2080]
Length = 165
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 6/149 (4%)
Query: 19 SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E + +++ P R V+ L Q G+V A+ VVA + ++
Sbjct: 8 TAEQIENLKGLLT--PIAEREPGPVLLCLQAVQTHYGYVPEGAVAVVAEVCNVTRADAHG 65
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ ++Y+ V++C C G L P + G + E
Sbjct: 66 VFSYYSDL-RKTPPPLISVRLCAAEACQAVGGRALAAAWGEACAADPNLAGATG--TDEP 122
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLE 166
V C G C P ++ +++ E L+
Sbjct: 123 VFCLGNCALGPAALVNDQLIGNVSVEALK 151
>gi|266619596|ref|ZP_06112531.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
hathewayi DSM 13479]
gi|288868846|gb|EFD01145.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
hathewayi DSM 13479]
Length = 149
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 27 NEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
E++ Y R + ++ +L QE G++ +A + +L++ Y
Sbjct: 8 REIVDYYSSQRDAGSQENIVEMLREVQELYGYIPSEKTRAMAEATGVKQTLLLQLIKLYP 67
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
F+ +P G + VC C +G ++ E K + G EC
Sbjct: 68 SFKKAPYG--HCITVCTGARCGDKGSAEVFEAV-----LKAVEARESGAFKIVMKECLKQ 120
Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C AP +M+ D+Y + P+ + I+ +
Sbjct: 121 CKTAPNLMVDSDSYGCVKPDEVASILSNY 149
>gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
taiwanensis LMG 19424]
gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
taiwanensis LMG 19424]
Length = 569
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 19/180 (10%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ QP + V + P R + +I L ++ G ++ + +A+ L
Sbjct: 18 KRRQPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASEL 75
Query: 69 DMAYIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
++ V E+ATFY F + V+VC C L G + LI+ +
Sbjct: 76 RLSMTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALL 135
Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ + C G C AP ++G++ ++ T E + ++A +
Sbjct: 136 GTEVRVIAA---------PCIGRCEKAPAALVGQNPVDNATAETIGTAVEAKAVRHAPEP 186
>gi|331092182|ref|ZP_08341012.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401954|gb|EGG81528.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 157
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
Q ++ L Q+ G + A + I+ M + +I + Y L+ +
Sbjct: 25 QNDQETLVQFLRETQDIFGCIPADAKMQIGEIMGMKPSLIDKIISMY--PSLTAEKFQTE 82
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC C + +K++ + + +P DG C C P +MIG
Sbjct: 83 IIVCSGASCSSKNAQKVLSEIQTLLQIRPGQVTKDGRYKLTAKPCMKQCKKGPNLMIGST 142
Query: 156 TYEDLTPERLEEII 169
Y ++ E+L+ ++
Sbjct: 143 IYHNIDSEKLKTLL 156
>gi|224696908|emb|CAX51532.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica
HKI 454]
gi|224696911|emb|CAX51534.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 512]
gi|224696923|emb|CAX51542.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 513]
gi|307697982|gb|ADN86359.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
gi|307697985|gb|ADN86361.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
gi|307697988|gb|ADN86363.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
gi|307697994|gb|ADN86367.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
Length = 91
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +C PC L G ++ E + K+ DG + +E EC GAC
Sbjct: 1 MYETAPVGQHKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60
Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+AP+V++ ++ E+++++++
Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEEL 89
>gi|307697976|gb|ADN86355.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
gi|307697979|gb|ADN86357.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
Length = 91
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +C PC L G ++ E + K+ DG + +E EC GAC
Sbjct: 1 MYETAPVGQHKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60
Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+AP+V++ ++ E+++++++
Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEEL 89
>gi|224696914|emb|CAX51536.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 455]
gi|224696917|emb|CAX51538.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 402]
gi|224696926|emb|CAX51544.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 403]
gi|224696929|emb|CAX51546.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 404]
gi|307697997|gb|ADN86369.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
Length = 91
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +C PC L G E+ E + K+ DG + +E EC GAC
Sbjct: 1 MYETAPVGQHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60
Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+AP+V++ ++ E+++++++
Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEEL 89
>gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina]
Length = 610
Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 7/154 (4%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
R ++ L+R Q++ +V AA+E ++ LD+ +V FY P G
Sbjct: 21 GRDPRHLLQHLIRVQQRFSYVPDAAVEALSVALDVTRTQVRAAIAFYAFLHDRPRGA-FE 79
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKP------LHRNSDGTLSWEEVECQGACVNAPM 149
++ + G +LI + ++ DG S C G C P
Sbjct: 80 IRFSDNITDRMLGSRRLIRLLIERLGLTGLPAWGRDLVRPDGRASVGLASCTGMCDQGPA 139
Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+++ +L +R++ I D G PG
Sbjct: 140 LLVNGQAVTNLDAQRVDRIADLVQEGIPLERWPG 173
>gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
aromaticum EbN1]
gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
aromaticum EbN1]
Length = 585
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+ +I L R Q++ G + + +A + +A V E+ATFY F P G +A
Sbjct: 50 ETPRADRLIEYLHRLQDEHGALHADHLAALAEAMKLARAEVFEVATFYHHFDFVPAGGKA 109
Query: 95 ----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
V+VC + C + G +L +++ + + V C G C +AP+
Sbjct: 110 PPALTVRVCESLGCAMAGGAELAASLASQLGAEVR---------VQRVPCVGRCDSAPVA 160
Query: 151 MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
++G+ +R+ ++ + G+ D P
Sbjct: 161 VVGQRPVLHADADRVAAVV---AGGERDEPLP 189
>gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2]
gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Polaromonas naphthalenivorans CJ2]
Length = 600
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Query: 19 SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ S V +I P + +I L R + + + +A +++ V E
Sbjct: 37 DDGSLEEVRALIGVRPADGHRRDLLIEHLHRLNDAYRCLHDRHLVALAREMNIPMAEVYE 96
Query: 78 IATFYTQFQLSPVGTR-------AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
+ATFY F++ V+VC C + G + L+ + + + +
Sbjct: 97 VATFYHHFEVVKGDANGDGQAPGLTVRVCDGLSCEMAGAQDLLARLPALLGAQDVRVIA- 155
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
C G C AP+ ++ + T E + +
Sbjct: 156 -------APCLGRCEQAPVAVVHQTPVPFATLESVVQ 185
>gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72]
gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp.
BH72]
Length = 571
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPV 90
+ +I L R Q+ G + + +A + +A V E+ATFY F +
Sbjct: 34 ETPRADRLIEYLHRLQDAHGALYADHLAALAEAMKLAQAEVYEVATFYHHFDVVPAGETP 93
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
V+VC + C L G +L + ++ + + V C G C AP+
Sbjct: 94 PPLLTVRVCDSLTCALYGGPELAAELQGRLGAEVR---------VQRVPCVGRCDCAPVA 144
Query: 151 MIGKDTYED 159
++G++
Sbjct: 145 VVGQNPVMH 153
>gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit
[Oxalobacteraceae bacterium IMCC9480]
gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit
[Oxalobacteraceae bacterium IMCC9480]
Length = 573
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 23/186 (12%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ V ++ SR +I L ++ G + + +A + ++ V E+A
Sbjct: 28 PHALAEVQALLGI--ASRQPDLLIEHLHAINDRYGQLGTPHLAALAQEMRLSQAAVYEVA 85
Query: 80 TFYTQFQLSPVGTR--------AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
TFY F++ + V+VC C + G L++ +
Sbjct: 86 TFYHHFEVVREDSDGEVAAAPSMTVRVCDGLSCEMAGARDLLDRLPALLGA--------- 136
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
T+ C G C AP+V+ G+ L +++++ A G + P P ID +
Sbjct: 137 TIRVIPAPCVGRCEQAPVVVAGQL---PLVHADVDQVVAAVQAGTVVHV-PAPYIDLAAY 192
Query: 192 APAGGL 197
GG
Sbjct: 193 RTYGGY 198
>gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B
[Herminiimonas arsenicoxydans]
gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans]
Length = 567
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 15/161 (9%)
Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
+ P + V ++ SR +I L + Q++ G ++ A + +A +
Sbjct: 20 KRQAPKGRRVDPVALEEVRALLGD--ESRQADLLIEHLHKIQDKFGHLASAHLAALAQEM 77
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
+A V E+A+FY F + G A V+VC C + G L+ + ++
Sbjct: 78 RLAQTEVYEVASFYHHFDIVKEGEAAPQALTVRVCDGLSCEMGGARDLLAKLPKILGKEV 137
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
+ C G C AP+V++G++ T + +
Sbjct: 138 RVIAA---------PCVGRCEQAPVVVVGQNPIIQATVDSV 169
>gi|224696920|emb|CAX51540.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
Length = 91
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +C PC L G E+ E + K+ DG + +E EC GAC
Sbjct: 1 MYETAPIGQHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60
Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
+AP+ ++ ++ E+++++++
Sbjct: 61 GDAPVALLNNHRMCSFMSREKIDQLLEEL 89
>gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
Length = 571
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGT 92
R + +I L Q+ G++S + +A+ +++ + E ATFY F +
Sbjct: 42 RHRDRLIEHLHVVQDACGYLSMPHLRALASFMNLPMAAIYETATFYAHFDVIHDEQAPPP 101
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++VC + C L G E L + + T+ C G C AP+V +
Sbjct: 102 AITLRVCDSLSCQLAGAEALHQALSD--------GADPATVRVRRAPCMGRCDTAPVVEV 153
Query: 153 GKDTYEDLTPERLEEIIDA 171
G + + ++
Sbjct: 154 GHHHVCHANAQNVGAAVEQ 172
>gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Pseudonocardia dioxanivorans CB1190]
gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Pseudonocardia dioxanivorans CB1190]
Length = 626
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L + G++S A+ VA L + V +ATFY F + P R V
Sbjct: 46 RRHLLLPALHAVSDAVGYLSEGALNHVATRLSVPPADVYGVATFYAMFTVEPRARR-VVH 104
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
VC C G E L + + + + W C G C AP VM
Sbjct: 105 VCDDVACGPVGGEDLAARLTADLGPEGVGEEAC----WVRSPCLGLCERAPAVMFQ 156
>gi|331087567|ref|ZP_08336498.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330400707|gb|EGG80311.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 156
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 5/152 (3%)
Query: 24 IWVNEVISRYPPSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
+ E+ + Y R +S VI LL QE EG ++ V ++ + +
Sbjct: 3 EQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLNCLIK 62
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
Y + + C C + +++ R ++ K +SDG C
Sbjct: 63 MY--PSIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELRTRNC 120
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C +P + I + Y + ++ +++
Sbjct: 121 LKQCRTSPNMYIDRKLYSGEQLKDIKTLLNNI 152
>gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 607
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ + L + +ATFY F + P +
Sbjct: 51 RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVKPRPAT-VLH 109
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
VC C G +L ++ +S E C G C AP +
Sbjct: 110 VCTDLACAASGAPELCAGIEARLGPGSG-------VSVERSPCLGLCERAPAALA 157
>gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
Length = 591
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 4 RRLAE-EEFQPSSFSFSEESAIWVNEVISRYPPSRCQS-AVIPLLMRAQEQEGWVSRAAI 61
+R+++ + QP + S + +I PP +S +I L + + +
Sbjct: 26 QRVSKLKGRQPD-----DVSLQELRALIGVPPPGGHRSDLLIEHLHLLNDHYRGLFERHL 80
Query: 62 EVVANILDMAYIRVLEIATFYTQ---FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
+A+ + + V E+ATFY + V+VC + C + + L+
Sbjct: 81 VALASDMKLPMAEVFEVATFYHHFEVMRDGQSPAALTVRVCDSLSCAMARSDDLLARLTG 140
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
+ ++ C G C AP V++G+ + T + E +
Sbjct: 141 LLGA---------SVRVMAAPCLGRCEQAPAVLVGQRAVPNATTASVLEAVQ 183
>gi|154503789|ref|ZP_02040849.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149]
gi|153795889|gb|EDN78309.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149]
Length = 158
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
Q+ ++ L Q+ G + A E +A+I+ + + + Y + +
Sbjct: 30 QAILVEFLRETQDIFGCIPNDAKEQIASIMQVKPALIDTLIRLYPSLSSQTYQKE--IIL 87
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C + C + L+ K+ + SDGT +C C P + +G Y
Sbjct: 88 CTGSTCSSKQSALLLRKLEQKLQIRQGEVTSDGTYLLRTQKCFKQCGQGPNMKVGDKMYH 147
Query: 159 DLTPERLEEI 168
+T E ++++
Sbjct: 148 HVTAELIDQL 157
>gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Chromohalobacter salexigens DSM 3043]
Length = 595
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQ 97
+I L Q+ +G +S + +A +++ V E ATFY F + V+
Sbjct: 71 LIEHLHTIQDAQGHLSLVMLRALATYMNLPMAAVYETATFYAHFDVVHDDQSPPPEVTVR 130
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC + C L G E L + + + C G C AP+V +G
Sbjct: 131 VCDSLSCRLAGAEALKAKLAAGVDPEA--------VRVVRAPCMGRCDTAPVVEVGHHHV 182
Query: 158 EDLTPERLEEIID 170
T E + +ID
Sbjct: 183 RFATHEGVASVID 195
>gi|153816474|ref|ZP_01969142.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756]
gi|317500205|ref|ZP_07958436.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium
8_1_57FAA]
gi|145846216|gb|EDK23134.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756]
gi|316898376|gb|EFV20416.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 160
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 5/156 (3%)
Query: 20 EESAIWVNEVISRYPPSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
++ + + E+ + Y R +S VI LL QE EG ++ V ++ +
Sbjct: 3 KKMSEQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLN 62
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+ Y + + C C + +++ R ++ K +SDG
Sbjct: 63 CLIKMY--PSIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELR 120
Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C C +P + I + Y + ++ +++
Sbjct: 121 TRNCLKQCRTSPNMYIDRKLYSGEQLKDIKTLLNNI 156
>gi|114571226|ref|YP_757906.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Maricaulis maris
MCS10]
gi|114341688|gb|ABI66968.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
Length = 163
Score = 71.7 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 4/147 (2%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
+ + S A+I +L Q G +S AAI +A+ L+++ VL + +FY F
Sbjct: 13 ARAACAHH--SNHPDALIEVLHWLQASAGHISDAAIATIADALNLSRAEVLGVVSFYHDF 70
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P G R ++C C G E + +++ + + + V C G C
Sbjct: 71 RRQP-GARHTFKLCRAEACQAAGAEAVAAAIEDQL-EALSTTDHPPEFELKSVYCLGNCA 128
Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
P M+ + LT ER +
Sbjct: 129 LGPAAMLDERPLGRLTAERALAALTRL 155
>gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
Length = 580
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
R + +I L Q++ G ++ + +A L +A V E+ATFY F + H+
Sbjct: 44 RRRDLLIEHLHCIQDRYGQLAMPHLVALAQELGLAMTEVYEVATFYHHFDVVREDADGHI 103
Query: 97 --------QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+VC C + G + LI+ + + C G C AP
Sbjct: 104 APPPALTVRVCEGIACEMAGAQVLIDKLPAVLGTDVRVVAA---------PCIGRCEKAP 154
Query: 149 MVMIGKDTYEDLTPERL 165
V+ G+ + T E +
Sbjct: 155 AVLAGQKPVDGATVEAV 171
>gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
Length = 581
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P L ++ GW+S+ A+ ++ L + +A+FY+ F L R V V
Sbjct: 26 RDQLLPALHAVNDRVGWISQGALNLICETLHVPPADAYGVASFYSLFALDERPER-VVHV 84
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
C C + G E + +V + + G ++W C G C AP +
Sbjct: 85 CTDLACRITGAETVCDVLTEHVGAAG---KARGGVTWLRSPCLGVCERAPAAL 134
>gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 600
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 20/176 (11%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
++RR ++ + + + S V ++I P + +I L + ++ + +
Sbjct: 24 TIRRKSKLKGR----QVDDVSVAEVRQLIGHAP--HRRDLLIEHLHKLNDEYRALHDRHL 77
Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRN 118
+A +++ V E+ATFY F++ V+VC C L G + L+ +
Sbjct: 78 VALAKEMNLPMAEVYEVATFYHHFEVVRGNDPVADITVRVCDGIACELAGAQNLLSKLPS 137
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
+ + + C G C AP+ ++ + ++++ A
Sbjct: 138 ILGNPNIKVAA--------APCVGRCEQAPVAVV---HQYPVIFASVDKVAAAIKN 182
>gi|317125323|ref|YP_004099435.1| formate dehydrogenase, subunit gamma [Intrasporangium calvum DSM
43043]
gi|315589411|gb|ADU48708.1| formate dehydrogenase, gamma subunit [Intrasporangium calvum DSM
43043]
Length = 157
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ A++ +L A + G + R +E +A++L+++ V + +FY F+ V +
Sbjct: 30 RGALMVVLHAAVAELGHLERTDVETIADVLNLSVADVHGVVSFYKDFRT-DPAPAHTVHL 88
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
C C G E + R ++ + + +EV C G C P M+ +
Sbjct: 89 CRGEACQAVGAESVFAQARAQLAHR-------DDVEVDEVFCLGNCALGPSAMVDGRLHG 141
Query: 159 DLTPERLEEIIDA 171
L+ ERL + +
Sbjct: 142 RLSGERLLGLTEE 154
>gi|237667145|ref|ZP_04527129.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|237655493|gb|EEP53049.1| putative iron hydrogenase, gamma subunit [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 94
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
++ ++ +Y +R +I ++ Q++ ++ + +A L ++ ++ +ATFY
Sbjct: 1 MEKIDSILEKYDYNRQ--LLIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFY 58
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
F L P G + +++C T C +R ++E
Sbjct: 59 ENFSLKPKG-KYVIKICNGTACHVRKSIPILE 89
>gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
A3(2)]
Length = 646
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ V L + +ATFY F + P +
Sbjct: 34 RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPAT-VLH 92
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
VC C G +L +++ + + E C G C AP ++
Sbjct: 93 VCTDLACTAAGASRLCAAVESRLGPESG-------VKLERSPCLGLCERAPATLV 140
>gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
Length = 306
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
+ ++P L ++ GW+S A+ + L + +ATFY F L P + V
Sbjct: 49 RDLLLPGLHAVNDRVGWISEGALNYLCRRLTVPPAEAYGVATFYAMFSLRPRPAT-VLHV 107
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
C C G L ++ ++ E C G C AP +
Sbjct: 108 CTDLACAAAGAGDLCAGVEARLGPGSG-------VAVERSPCLGLCERAPAALA 154
>gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
Length = 573
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 22/191 (11%)
Query: 19 SEESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ V +++ P + + +I L + G + + +A +L ++ V E
Sbjct: 28 DAQALSTVQALLAARPQTPLRRDLLIEHLHTLNDHFGQLRTDHLAALAQLLRLSQAEVYE 87
Query: 78 IATFYTQFQLS--------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
+A+FY F++ P V+VC C L G L+ + + +
Sbjct: 88 VASFYHHFEVVQAKADGSYPEPAPLTVRVCDGIACELTGARDLLTRLPALLGTEVRVIAA 147
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
C G C AP ++ + + TPE ++ A + G+ P P
Sbjct: 148 ---------PCIGRCEQAPAAVVHQCPVPNATPEAVQA---AVTAGRTKH-EPAPYTTLP 194
Query: 190 SSAPAGGLTSL 200
S AGG +L
Sbjct: 195 SYHDAGGYRTL 205
>gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666]
gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Polaromonas sp. JS666]
Length = 566
Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 20/160 (12%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
+R A + + + V ++ SR +I L + Q+ G +S A +
Sbjct: 19 KRQAPKGRRVE-----PSALADVQRLLGS--ESRQADLLIEHLHKIQDHFGHLSAAHLAA 71
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNK 119
+A + +A V E+ATFY F + G A V+VC C + G L++
Sbjct: 72 LAQEMRLAQTEVYEVATFYHHFDVVKEGEAAPAPLTVRVCDGLSCEMAGARDLLDRLPAL 131
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
+ ++ + C G C AP ++G++ +
Sbjct: 132 LGREVRVIAA---------PCIGRCEQAPAAVVGQNPVPN 162
>gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
Tu4000]
gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
Tu4000]
Length = 641
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 42/176 (23%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ + L + +ATFY F + P +
Sbjct: 51 RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPAT-VLH 109
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC C G +L +++ + E C G C AP +
Sbjct: 110 VCTDLACTAAGAAELCADVESRLTPGSG-------VQVERSACLGLCERAPAAL------ 156
Query: 158 EDLTPERLEEIIDAFSTGQGDTI------RPGPQIDRISSAPAG--------GLTS 199
A G+ RPGP+ + P G G T+
Sbjct: 157 -------------AIRAGETARPAFEDEARPGPEGGP-GAQPPGEGNGKGRRGRTT 198
>gi|167746358|ref|ZP_02418485.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662]
gi|167654351|gb|EDR98480.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662]
Length = 150
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 25 WVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
V+E++ Y + ++ L QE G + +A E A L + +
Sbjct: 4 RVDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKK 63
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--E 139
Y F V + V+VC C +++ +K D +S + V
Sbjct: 64 YPGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAAGEEKER----DQGISIKIVKGR 117
Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C C P ++I + +TPE+ +I
Sbjct: 118 CTRRCGKGPNLIINGVLHHHMTPEQAAGLIRRL 150
>gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
avermitilis MA-4680]
Length = 607
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
++P L ++ GW+S A++ + L + +ATFY+ F + P + VC
Sbjct: 55 LLPGLHAVNDRIGWISEGALDYLCRRLTVPPAEAYGVATFYSMFAVKPRPAT-VLHVCTD 113
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
C G +L ++ G C G C AP +
Sbjct: 114 LACASAGAAELCAGVEARLGPGSGVGVERG-------PCLGLCERAPAALA 157
>gi|256783975|ref|ZP_05522406.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
Length = 261
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ V L + +ATFY F + P +
Sbjct: 51 RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPAT-VLH 109
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
VC C G +L +++ + + E C G C AP ++
Sbjct: 110 VCTDLACTAAGASRLCAAVESRLGPESG-------VKVERSPCLGLCERAPATLV 157
>gi|163784146|ref|ZP_02179087.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
gi|159880590|gb|EDP74153.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
Length = 112
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++E + ++Y A+IP L QE + AI ++ L + +
Sbjct: 6 LTKEVIEKIEYFKNKYLTKEQ--AIIPSLHTIQETYRDIPDEAIRELSEYLQVPEADIEG 63
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
I +FY F+ +++C PC L G K +++ +
Sbjct: 64 IVSFYDMFRFEKKAKNH-IRLCRNLPCHLAGSRKFLKMLEKLTGAEAG 110
>gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces
bingchenggensis BCW-1]
Length = 626
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
++P L ++ GW+S A++ + L + +ATFY F + P V VC
Sbjct: 56 LLPGLHAINDRVGWISEGALDYLCRRLTVPPAEGYGVATFYAMFSVRPRPAT-VVHVCTD 114
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
C RG ++ + R + W+ C G C AP +
Sbjct: 115 LACAARGSAEVCAGLERDLGAAGSARAG--GVVWQPSPCLGLCERAPAALA 163
>gi|323692272|ref|ZP_08106513.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum
WAL-14673]
gi|323503687|gb|EGB19508.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum
WAL-14673]
Length = 184
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 11/160 (6%)
Query: 23 AIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
+ E++S Y S+ ++ ++ QE GW+S E+ A + + I
Sbjct: 26 EEELKEILSYYSSMTSPSSQENIVSMMQEIQELYGWISAEHKEMAAEAAGVKLSVIDCIM 85
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-----LHRNSDGTLS 134
Y L P R + C C R + L++ + ++ K +SD +
Sbjct: 86 KLYK--SLKPAPYRHRMTFCTGKNC-HREGQNLLDTVKKELGIKGKIPASGALSSDKKVL 142
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
E +C C AP ++ Y E +++++ +
Sbjct: 143 LETRDCLKQCRTAPNFLLDGKLYSSAGEEEIKKLLKKLRS 182
>gi|317470766|ref|ZP_07930150.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA]
gi|316901755|gb|EFV23685.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA]
Length = 150
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 26 VNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
V+E++ Y + ++ L QE G + +A E A L + + Y
Sbjct: 5 VDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKKY 64
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--EC 140
F V + V+VC C +++ +K D +S + V C
Sbjct: 65 PGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAAGEEKER----DQGISIKIVKGRC 118
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
C P ++I + +TP++ +I
Sbjct: 119 TRRCGKGPNLIINGVLHHHMTPDQAAGLIRRL 150
>gi|307069591|ref|YP_003878068.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus
Zinderia insecticola CARI]
gi|306482851|gb|ADM89722.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus
Zinderia insecticola CARI]
Length = 154
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
++ + + ++P +S ++ +L +++ +++ ++ ++ +L +++I+V E
Sbjct: 3 LNKYIYKNIKKEFKKFPLENKRSIILYILRIFEKKYNFINNKILKKISKVLKISFIQVKE 62
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I+ FY L + + +C + C L K+I + +I +K + +
Sbjct: 63 ISNFYKMCNLKKKV-KYKIFICNSISCYLNNSLKVINFLKKEIFKKKKKKLF----YIHK 117
Query: 138 VECQGACVNAPMVMIGKD---TYED 159
C G C +P +I Y +
Sbjct: 118 SSCMGLCSFSPFFLINNKKLFFYMN 142
>gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Isosphaera pallida ATCC 43644]
gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit
[Isosphaera pallida ATCC 43644]
Length = 581
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 17/172 (9%)
Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSR--CQSAVIPLLMRAQEQEGWVSRA 59
S RR + P ++ V + + +I L Q+ G +
Sbjct: 28 SGRR--KPPVTPKGRQVDPQAIREVQAALEEAGSGPPDQRDLLIEHLHALQDFYGILIPR 85
Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPV----GTRAHVQVCGTTPCMLRGCEKLIEV 115
+ +A++ ++ V E ATFY FQ+S RA ++VC CM++G E L+
Sbjct: 86 HLAALADLARLSLAEVYETATFYAHFQMSRSDDLAPPRATIRVCDGVVCMIQGAEALLRE 145
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
R N+ + C G C AP M+G+ TPERL
Sbjct: 146 TRA---------NAPADVRVVPAPCMGWCDRAPAAMVGQRHISAATPERLVA 188
>gi|225572091|ref|ZP_03780955.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM
10507]
gi|225040425|gb|EEG50671.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM
10507]
Length = 155
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 22 SAIWVNEVISRYPPSRCQSA----VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+ E+ Y R A ++ + QE G++ E +A + +
Sbjct: 3 EQETIEEIFEYY-KGRDDCASQESLVDMFREIQEVYGYIPAELKERMAREFCVKETFLNC 61
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I Y L V VC C + +L+ R + + + DG +
Sbjct: 62 IIQRY--PSLKEQKITHTVIVCSGERCRNKNAAELLAYIRKSLKIQKNGSSEDGKVCLRT 119
Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
C C +P + + + +T E+ ++I+ +
Sbjct: 120 QNCLRHCRTSPNISVDGEIQTGMTCEKWKQILQS 153
>gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246]
Length = 686
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP-VGTRAHVQVC 99
++ L Q + G++ + +A+ +++ R+ E+++F+ F+L ++VC
Sbjct: 1 MIVQRLRDIQNRFGFLPDKELRALAHEINVPLYRIEEVSSFFPAFKLERTNPPEIEMRVC 60
Query: 100 GTTPCMLRGCEKLIEVCR--NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-- 155
C RG L++ + + E V C G C AP V + K
Sbjct: 61 RDLTCHHRGAAALLDERTGLPVLAAELSEATGKSVC-VEGVSCLGRCDRAPAVWVEKRPM 119
Query: 156 -------TYEDLTPERLEEIIDAFSTGQGDT 179
Y E LE ++ + +
Sbjct: 120 PEHVHAWVYAGRDGEFLEGVLRDLAADRDPP 150
>gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Kribbella flavida DSM 17836]
gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Kribbella flavida DSM 17836]
Length = 565
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
++IPLL Q + GW+ R +E +A + + +FY F L+ V+VC
Sbjct: 22 SLIPLLNAIQARCGWLPREELEALARQQKRPLYEIEGLVSFYPHF-LTAPPKDVTVRVCR 80
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C L+G E + + + E+ C G C AP + + +
Sbjct: 81 DLACWLKGAEGPAAALTAQYAEAE-------DVEVLEISCPGRCDMAPAATVNEK---PV 130
Query: 161 TPERLEEIIDAFSTG 175
E + ++ + G
Sbjct: 131 RLEDVPATVEQVAAG 145
>gi|237738151|ref|ZP_04568632.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
gi|229420031|gb|EEO35078.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
Length = 151
Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 4/151 (2%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
+E + E I + + +L E+ + + + +A+ + I +
Sbjct: 3 DKEFYKELEEFIENLRDKKDD---VKILNFVIEKIDSIPKEVQKFIADKTGLMEISIENT 59
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
FY +F + V V VC C G +++ + + DG +
Sbjct: 60 INFYPKF-RNRVSNIKEVAVCTGMSCGPAGGQEIYNELVKILEVDSNGLSKDGKIMLSNK 118
Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
C G C P V I + Y ++ + ++ +
Sbjct: 119 RCFGRCAKGPNVSIDGEIYSLMSLQDVKRKL 149
>gi|90569075|gb|ABD94428.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
Length = 74
Score = 64.0 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/74 (75%), Positives = 62/74 (83%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LIE+C+ KI +P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIEICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|90569063|gb|ABD94422.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
Length = 74
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/74 (75%), Positives = 61/74 (82%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIAGDP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|31747591|gb|AAO38265.1| probable Fe-hydrogenase gamma subunit [Leptospirillum ferrooxidans]
Length = 73
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
L++ + ++ +P D + E V C G+C APM M+ Y L+P+++ +I
Sbjct: 2 LVDKVKEELKIEPGENTEDMLFTLEPVSCLGSCALAPMAMVTDTAYGKLSPDKMLGLIKD 61
Query: 172 FSTGQGDTIRP 182
+ P
Sbjct: 62 LESEHLSASEP 72
>gi|90569061|gb|ABD94421.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
gi|90569065|gb|ABD94423.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
gi|90569081|gb|ABD94431.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
Length = 74
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 62/74 (83%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Isosphaera pallida ATCC 43644]
gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Isosphaera pallida ATCC 43644]
Length = 571
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
++ L Q++ G++ + + + R+ E+A+F+ ++L P T V +C
Sbjct: 1 MIVQELNAIQQKFGYLPEEELRAFSKRSQIPMYRLHEVASFFPHYRLKPPATG-TVLICR 59
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
C L G +L++ + + D + V C G C AP ++I
Sbjct: 60 DLACHLAGASRLLQTLKATARET------DERIEVGGVSCLGQCDRAPALLINDQVIWGQ 113
Query: 161 TPERLEEI 168
T +L +
Sbjct: 114 TESQLRAL 121
>gi|90569067|gb|ABD94424.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
gi|90569069|gb|ABD94425.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
gi|90569079|gb|ABD94430.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
Length = 74
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|90569073|gb|ABD94427.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
Length = 74
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FALNEGGTLSWEEV 74
>gi|297190827|ref|ZP_06908225.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
25486]
gi|297150630|gb|EFH30697.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
25486]
Length = 176
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ + L + +ATFY+ F + P + +
Sbjct: 53 RRDLLLPALHAVNDRVGWLSEGALDYICRRLTVPPAEAYGVATFYSMFSVRPRPAK-VLH 111
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
VC C RG D +S + C G C AP ++
Sbjct: 112 VCTDLACAARGGSLSAADA----------VGPD--VSVQPSPCLGLCERAPAALL 154
>gi|126680935|gb|ABO26551.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
Length = 74
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P
Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIMICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|307331427|ref|ZP_07610545.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
violaceusniger Tu 4113]
gi|306882926|gb|EFN13994.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
violaceusniger Tu 4113]
Length = 319
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTP 103
P L ++ GW+S ++ + L + +ATFY F + P V VC
Sbjct: 58 PGLHALNDRVGWISEGGLDYLCRRLTVPPAEGYGVATFYAMFAVKPRPAT-VVHVCTDLA 116
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
C RG ++ + ++ W+ C G C AP +
Sbjct: 117 CAARGSARVCAELERDLGPAG---SAGSGAVWQPSPCLGLCERAPAALA 162
>gi|90569077|gb|ABD94429.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
Length = 74
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/74 (72%), Positives = 62/74 (83%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P
Sbjct: 1 ADMLGMAYMRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|90569071|gb|ABD94426.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
Length = 74
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P
Sbjct: 1 ADMLGMAYVRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIASDP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|255281710|ref|ZP_05346265.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267777|gb|EET60982.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 148
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
+L QE G++S + A L + + L + V VC C
Sbjct: 1 MLREIQEFYGFISPEMKQHAAEALGVKEGIL--TCLIRRFPSLKEADYQHTVTVCTGERC 58
Query: 105 MLRGCEKLIEVCRNKIHQKPLH------RNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
+ K+++ + ++ + + +G + C C AP +MI Y
Sbjct: 59 GRKQGMKILQEVKRELQIDEEYSSRQPMLSKNGKCLLKTQNCLKQCRTAPNLMIDGKVYH 118
Query: 159 DLTPERLEEII 169
+ E + ++
Sbjct: 119 QIKLEDVHNLL 129
>gi|60687924|gb|AAX30295.1| SJCHGC02806 protein [Schistosoma japonicum]
Length = 82
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
G E ++ + + +P D + EVEC GACVNAPM+ I D Y
Sbjct: 6 GSEAILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYY 55
>gi|126680955|gb|ABO26552.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
Length = 74
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 54/74 (72%), Positives = 62/74 (83%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
A++L MAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P
Sbjct: 1 ADMLGMAYIRVIEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60
Query: 125 LHRNSDGTLSWEEV 138
N GTLSWEEV
Sbjct: 61 FTLNEGGTLSWEEV 74
>gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca]
gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
platensis NIES-39]
Length = 537
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + C +T C ++ + + + + L + + V C G C
Sbjct: 12 KERNNQKSIRIHCCTSTGCQASESLEVKKAMEDALKESGLEAD----VQIVGVGCMGFCG 67
Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTI 180
PMV + YE +TPE II+A G+ +
Sbjct: 68 RGPMVEVEPNGIHYEKVTPEDAPSIIEALKGGEAKPV 104
>gi|225407903|ref|ZP_03761092.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
DSM 15981]
gi|225042582|gb|EEG52828.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
DSM 15981]
Length = 158
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 19 SEESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
+ ++ + + E++ Y +++ V+ +L Q+ +G++S + A + V
Sbjct: 6 TRDTEVQIREILDYYGGREDRASQETVVEMLRELQDAQGFLSPGILAAAAETAGVKESTV 65
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
I L R + VC C R ++++ R ++ P ++DG +
Sbjct: 66 RAIL--KRCPSLKTAPYRHEIVVCLGKNCGGRN-IEVLQELRRRLKTGPDGISADGRVKV 122
Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERL 165
C +C AP VM+ ++ E +
Sbjct: 123 STRSCLKSCRTAPNVMVDGKICSGVSAEGI 152
>gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit [Magnetospirillum magnetotacticum MS-1]
Length = 514
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 28/183 (15%)
Query: 1 MS-VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPS-RCQSAVIPLLMRAQEQEGWVSR 58
MS R P++ S E V ++ P R + +I L Q++ G + R
Sbjct: 4 MSATPRTHRRLGPPAA---SPECVAEVEALL---PDDFRRRDLLIENLHALQDRFGGLFR 57
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR---AHVQVCGTTPCMLRGCEKLIEV 115
+ +A + ++ V E+A+FY F+L A ++ C C +R E++ E
Sbjct: 58 RHLTALAEEMRLSPAEVQEVASFYAHFRLLDDDEAAPGAVLRRCTGPACAMRMPERVPE- 116
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ EE C G C +AP + GK D ++ +G
Sbjct: 117 ----------------GVVVEEAPCMGLCDHAPASLPGKGVVSDAILHEDYPVLARCRSG 160
Query: 176 QGD 178
+
Sbjct: 161 ELP 163
>gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
NRRL 2338]
Length = 560
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 8/156 (5%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ V+ L E G ++ A + VA+ L V A+FY L+ H
Sbjct: 14 GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYA--DLTAPQGLRH 71
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC T C + + + + + R+ +G +S + C G C +P + G
Sbjct: 72 VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 130
Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
TP + + + + P R +S
Sbjct: 131 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 161
>gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
NRRL 2338]
gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
NRRL 2338]
Length = 559
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 8/156 (5%)
Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
+ V+ L E G ++ A + VA+ L V A+FY L+ H
Sbjct: 13 GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYA--DLTAPQGLRH 70
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC T C + + + + + R+ +G +S + C G C +P + G
Sbjct: 71 VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 129
Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
TP + + + + P R +S
Sbjct: 130 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 160
>gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
Length = 537
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + C +T C ++ + + + L + + V C G C
Sbjct: 12 KERNNQKSIRIHCCTSTGCQASESLEVKKAMEDALKGSGLEAD----VQIVGVGCMGFCG 67
Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTI 180
PMV + YE +TPE II+A G+ +
Sbjct: 68 RGPMVEVEPNGIHYEKVTPEDAPSIIEALQGGEAKPV 104
>gi|22212574|dbj|BAC07503.1| NADH-ubiquinone oxidoreductase 24kDa subunit [Phanerochaete
chrysosporium]
Length = 56
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
DLTPE ++++DAF +G+ +PGPQ R +S + GLT+L G +
Sbjct: 1 DLTPETTKKVLDAFK--KGEKPKPGPQSGRHTSENSAGLTALTS-EPYGPGAFCTPE 54
>gi|154496302|ref|ZP_02034998.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC
29799]
gi|150274385|gb|EDN01462.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC
29799]
Length = 196
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 39 QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
Q+ ++ LL Q G + + A+E +A L + + Y + V R +
Sbjct: 67 QNELVQLLRETQALYGGVIPQQALEEIAQALGFRASFLPAVLKRYPSIKTESV--RHSLT 124
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
VC C R +L++ + +P + G + C C P V Y
Sbjct: 125 VCQGPSCGRR--RELLDFLSREYGVEPGGVAAAG-FRLQTGGCMKNCGKGPCVRWDGTVY 181
Query: 158 EDLTPERLEEIIDA 171
+TPE L +I+
Sbjct: 182 TGMTPESLRALIEK 195
>gi|253581891|ref|ZP_04859115.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
gi|251836240|gb|EES64777.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
Length = 157
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 5/157 (3%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
++E I + E I+ + + +L E+ + + +A + I
Sbjct: 3 KMEVNKEFYIELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIAEKTGLLEIS 59
Query: 75 VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ FY +F+ G + V VC C + G E + + DG +
Sbjct: 60 IENTINFYPKFRNKVSGKQLKEVSVCVGMTCGVYGKG-FYEELAEILEIDEKGISKDGKI 118
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
C G C P V I + Y +T L+ ++
Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMTMAELKRRLE 155
>gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341]
Length = 531
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ ++ C C ++ + + + + L + + V C G C
Sbjct: 12 KERNNQKSIRIRCCTAAGCQASESLEVKKAMEDALKESGLEAD----VQIVGVGCMGFCG 67
Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTI 180
PMV + YE +TPE II+A G+ +
Sbjct: 68 RGPMVEVEPNGIHYEKVTPEDAPSIIEALKGGEAKPV 104
>gi|226939219|ref|YP_002794290.1| hypothetical protein LHK_00286 [Laribacter hongkongensis HLHK9]
gi|226714143|gb|ACO73281.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
[Laribacter hongkongensis HLHK9]
Length = 288
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
++ ++ +I + A++PLL Q Q G++ AA+ +A L + + +
Sbjct: 3 DDDLLATLDALIGA--NQDRRGALLPLLHAIQAQFGYIPDAAVPRLAQALRQSRADIDGV 60
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
+FY F+ +P +++C C G + + + P R G
Sbjct: 61 ISFYRDFRRTP-PRAHTLRLCRAESCQAMGA----DTLAHLLDHAPGCRRPGG 108
>gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22]
gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei
87.22]
Length = 610
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
+ ++P L ++ GW+S A++ + L + +ATFY F + P +
Sbjct: 54 RRDLLLPGLHALNDRIGWISGGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPAT-VLH 112
Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
VC C G L ++ +S E C G C AP +
Sbjct: 113 VCTDLACAAAGAAGLCAGIEARLGPGSG-------VSVERSPCLGLCERAPAALA 160
>gi|317063161|ref|ZP_07927646.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
gi|313688837|gb|EFS25672.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
Length = 157
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 5/148 (3%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
++E + E I+ + + +L E+ + + +A+ + I
Sbjct: 3 KMEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEIS 59
Query: 75 VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
+ FY +F+ G + V +C C + G + + + DG +
Sbjct: 60 IENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYGKG-FYDELAEILEVDENGVSKDGKI 118
Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLT 161
C G C P V I + Y +T
Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMT 146
>gi|254883634|ref|ZP_05256344.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
gi|319642295|ref|ZP_07996954.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
gi|254836427|gb|EET16736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
gi|317386151|gb|EFV67071.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
Length = 80
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + T+YT F + P G + + VC T C +RG EKL E + + + DG
Sbjct: 1 MYGMVTYYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFF 59
Query: 135 WEEVECQGACVNAPMVMI 152
+ + C GA P++MI
Sbjct: 60 PDCLWCVGAYGLPPVIMI 77
>gi|257468913|ref|ZP_05633007.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Fusobacterium
ulcerans ATCC 49185]
Length = 154
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
++E + E I+ + + +L E+ + + +A+ + I +
Sbjct: 1 MEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEISI 57
Query: 76 LEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
FY +F+ G + V +C C + G + + + DG +
Sbjct: 58 ENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYGKG-FYDELAEILEVDENGVSKDGKIL 116
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLT 161
C G C P V I + Y +T
Sbjct: 117 LTTKRCFGRCNKGPNVSIDGEIYSMMT 143
>gi|237668838|ref|ZP_04528822.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|237657186|gb|EEP54742.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 60
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ E V C GAC AP+ + + Y ++T +++ ++D
Sbjct: 1 MFTVETVSCLGACGLAPVCTVNDEVYPNMTKAKVKSLVDDIRKD 44
>gi|294775627|ref|ZP_06741136.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294450569|gb|EFG19060.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 80
Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + TFYT F + P G + + VC T C LRG EKL E + + + DG
Sbjct: 1 MYGMVTFYTFFAMIPKG-KHPISVCMGTVCRLRGSEKLPEEFKRILGIEAGETTPDGKFF 59
Query: 135 WEEVECQGACVNAPMVMI 152
+ + C GA P++MI
Sbjct: 60 PDCLWCVGAYGLLPVIMI 77
>gi|195400737|ref|XP_002058972.1| GJ15321 [Drosophila virilis]
gi|194141624|gb|EDW58041.1| GJ15321 [Drosophila virilis]
Length = 71
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQS 40
V R E+ F FS E+ V+ ++S YP +
Sbjct: 33 VHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRG 70
>gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
Length = 566
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
VA L + V A+F+ S HV+VC C + +
Sbjct: 53 VARTLGLPAAAVEGPASFFA--DFSAPRGARHVRVCSAAACFAATGGAHVPEVEAALGVP 110
Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
++ DGT+S + V C G C P ++G + P+ +++ + + + D P
Sbjct: 111 SGSKSPDGTVSLQAVRCLGYCFAGPAALVGDEACAG--PDLAAQLLGS--SPRTDPPIP 165
>gi|226312181|ref|YP_002772075.1| 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
gi|226095129|dbj|BAH43571.1| putative 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
Length = 125
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T+ HV +C CM +G E++ R I D + C G C +A +++
Sbjct: 9 TKHHVLICNGGSCMRKGGEEVTVAIREAIT----ESGLDDYVHTTRTRCNGRCEDACVMI 64
Query: 152 IGKD--TYEDLTPERLEEIIDA-FSTGQG 177
+ + YE++TPE +++++ F G+
Sbjct: 65 VYPEGIWYENVTPEDAQKLVEEHFQNGRP 93
>gi|218672651|ref|ZP_03522320.1| NADH dehydrogenase subunit E [Rhizobium etli GR56]
Length = 62
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/62 (79%), Positives = 54/62 (87%)
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
+LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KIH P
Sbjct: 1 MLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKIHAHPFE 60
Query: 127 RN 128
RN
Sbjct: 61 RN 62
>gi|150002992|ref|YP_001297736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
8482]
gi|149931416|gb|ABR38114.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
8482]
Length = 77
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+ TFYT F + P G + + VC T C +RG EKL E + + + DG +
Sbjct: 1 MVTFYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 59
Query: 138 VECQGACVNAPMVMI 152
+ C GA P++MI
Sbjct: 60 LWCVGAYGLPPVIMI 74
>gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Spirochaeta smaragdinae DSM 11293]
gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Spirochaeta smaragdinae DSM 11293]
Length = 1040
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
R ++VC C+ G +++E + + D S ++ C G C P
Sbjct: 21 ERKKRHLIRVCAGGGCLASGSIEVMEALESNLK----ELAVD--ASVKKTGCLGPCARGP 74
Query: 149 MVMIGKD--TYEDLTPERLEEIIDAF-STGQGDTIRP 182
+VMI + YE + PE EI + G+ T+ P
Sbjct: 75 VVMIEPEGLFYEGVHPEDCREICETLYKAGKNGTVDP 111
>gi|239826984|ref|YP_002949608.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
gi|239807277|gb|ACS24342.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
Length = 132
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ +G + HV +C CM +G E++ R +I DG + C G
Sbjct: 1 MTTWNLIGMKHHVLICNGGSCMRKGGEEVTLAIREEIAM----LELDGIVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
C +A +V++ + Y +TPE+ E++ G+
Sbjct: 57 CQDACVVIVYPEGVWYNGVTPEKARELVRRHLRDGE 92
>gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis
aeruginosa NIES-843]
gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis
aeruginosa NIES-843]
Length = 535
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ V C +T C + + + + + T+ V C G C
Sbjct: 12 KEKTRQKSIRVHCCTSTGCQAANSLQ----IKKNLATAVQEADLEDTVEVVGVGCMGFCG 67
Query: 146 NAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDT 179
P+V + YE++TPE II A + G+ +
Sbjct: 68 RGPLVEVDPQDLLYEEVTPESAASIIAALNGGKTEV 103
>gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 535
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ V C +T C + + + + T+ V C G C
Sbjct: 12 KEKTRQKSIRVHCCTSTGCQAANSLQ----IEKNLATAVKEAHLEDTVEVVGVGCMGFCG 67
Query: 146 NAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDT 179
P+V + YE++TPE II A + G+ +
Sbjct: 68 RGPLVEVDPQDLLYEEVTPESAASIIAALNGGKTEV 103
>gi|295704727|ref|YP_003597802.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
gi|294802386|gb|ADF39452.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
Length = 126
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ GT+ HV +C + CM +G E+ + RN K + D T+ C G
Sbjct: 1 MTTWNLNGTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGK--DTYEDLTPERLEEIIDAFSTG 175
C +AP+ ++ D Y+ +T I++ G
Sbjct: 57 CKDAPVAIVYPSGDWYKQVTETVAHRIVEEHLAG 90
>gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
Length = 569
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ HV VCG T C+ GC+ ++ + I L ++ C G C P++
Sbjct: 28 NFKYHVLVCGGTGCISIGCQNTLQAMQKAIEDHGLQETVKLVVT----GCMGTCEMGPVI 83
Query: 151 MIGKD--TYEDLTPERLEEII-DAFSTGQ 176
+ + Y + PE +EEI+ G+
Sbjct: 84 TVFPEGYYYCRVKPEDVEEIVTSHLKEGK 112
>gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
Desulfobacterium sp.]
Length = 541
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ + ++ VC T C+ G E ++ ++++ L + ++ C G C P+
Sbjct: 1 MSHKHNIIVCQGTGCISGGSEAILSALQDEVKNNNLEDT----VLVKQTGCHGFCQRGPL 56
Query: 150 VMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
V+I + Y +TPE + EI + G
Sbjct: 57 VVIEPEELFYSHVTPEDIPEIAQSLKDGGKPV 88
>gi|261885721|ref|ZP_06009760.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
fetus subsp. venerealis str. Azul-94]
Length = 56
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
+SDG S E EC G C AP ++ + + L + +I+
Sbjct: 2 GETSSDGLFSLGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKEN 53
>gi|308068791|ref|YP_003870396.1| ferredoxin, 2Fe-2S [Paenibacillus polymyxa E681]
gi|305858070|gb|ADM69858.1| Ferredoxin, 2Fe-2S (AaFd4) [Paenibacillus polymyxa E681]
Length = 108
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ HV VC CM E++ + R++I +N++ + C G
Sbjct: 1 MAIFELEPMKHHVLVCNGGTCMRHEGEEVTQAIRDEI----RKQNAEAYIHTTRTRCNGR 56
Query: 144 CVNAPMVMIGK--DTYEDLTPERLEEIIDAFSTGQGDTI 180
C +A +V++ D Y +TP+ +++ TG+
Sbjct: 57 CHDAAVVIVYPQGDWYGQMTPDSGTQLVQKLVTGEKLEP 95
>gi|89070604|ref|ZP_01157888.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
HTCC2516]
gi|89043821|gb|EAR50022.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
HTCC2516]
Length = 98
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 34 PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP---- 89
P R + +I L Q++ G++S A + +A L + V E+A+FY F L
Sbjct: 4 PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQAEVWEVASFYAHFDLVKEDEL 63
Query: 90 VGTRAHVQVCGTTPC 104
++VC + C
Sbjct: 64 PPPALTIRVCESLSC 78
>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
Length = 597
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C+ G KL E + ++ ++ L D + + C G C P++++
Sbjct: 7 HVLVCGGTGCVSSGSAKLQEALQKELGKQGL----DKEILLVQTGCHGMCEAGPIMVVYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + PE EI++ G+
Sbjct: 63 EGTFYTHVKPEDAAEIVEEHLLKGR 87
>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
Length = 621
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ + V+VC T C+ G ++ E + ++ L D E C G C
Sbjct: 17 RAARAASSRVRVCAGTGCLAGGSARVKEAFEVEAARRGLALGVD--FRAETTGCHGFCEE 74
Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
P+V+ G Y +TP + EI+DA ++G
Sbjct: 75 GPLVVAEPGGILYRRVTPSDVPEILDALASG 105
>gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
Length = 503
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 20/116 (17%)
Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
+ V+ LL E+ G + V+ + V +A+FYT A
Sbjct: 4 KGAKRKVVLQLL----EEHGGMRPGVARKVSEETGVPEADVYGVASFYTLLSR----PGA 55
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+VC C++ G E++I + + + E V C G C AP
Sbjct: 56 KTRVCQGLTCVMAGAEQVIAELKARGEE------------VEAVSCLGQCDRAPAA 99
>gi|167816878|ref|ZP_02448558.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 91]
Length = 92
Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
+++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +++C
Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRT-APPAHVTIRLCR 79
Query: 101 TTPCMLRGC 109
C G
Sbjct: 80 AEACRSMGG 88
>gi|325674817|ref|ZP_08154504.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707]
gi|325554403|gb|EGD24078.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707]
Length = 250
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G HV VC C RG + E + + D + + C C A
Sbjct: 145 EVPGFTRHVLVCRGPRCSARGGPETAEALDHAL---EARGLGDDDVLVTQTGCMFPCSQA 201
Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQI 186
P+V + Y LT +R++ ++D G+ T G +
Sbjct: 202 PVVAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHGARR 243
>gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Desulfotomaculum reducens MI-1]
Length = 569
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ HV VCG T C GC+ ++ + I + L ++ C G C P++
Sbjct: 28 NFKYHVLVCGGTGCHSVGCQNTLQALQKAIDSQGLQDTVKLVVT----GCMGTCEMGPVI 83
Query: 151 MIGKD--TYEDLTPERLEEII-DAFSTGQ 176
+ D Y + PE EE++ G+
Sbjct: 84 TVFPDGYYYCRVQPEDAEELVTSHLKEGK 112
>gi|295400339|ref|ZP_06810318.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111135|ref|YP_003989451.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
Y4.1MC1]
gi|294977614|gb|EFG53213.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216236|gb|ADP74840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
Y4.1MC1]
Length = 122
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ +G + HV +C CM +G E++ R +I DG + C G
Sbjct: 1 MTTWNLIGMKHHVLICNGGSCMRKGGEEVTLAIREEIAS----LELDGIVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEII-DAFSTGQ-GDTIRPGPQIDRIS 190
C +A +V++ + Y +TPE+ E++ G+ + + R
Sbjct: 57 CQDACVVIVYPEGVWYNGMTPEKGREVVRRHLRDGEWLEEMITYRYEGRQG 107
>gi|312138266|ref|YP_004005602.1| ferredoxin-like protein [Rhodococcus equi 103S]
gi|311887605|emb|CBH46917.1| putative ferredoxin-like protein [Rhodococcus equi 103S]
Length = 250
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G HV VC C RG + E + + D + + C C A
Sbjct: 145 EVPGFTRHVLVCRGPRCSARGGPETAEALDHAL---EARGLGDDDVLVTQTGCMFPCSQA 201
Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPG 183
P+V + Y LT +R++ ++D G+ T G
Sbjct: 202 PVVAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHG 240
>gi|294499376|ref|YP_003563076.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
gi|294349313|gb|ADE69642.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
Length = 126
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ GT+ HV +C + CM +G E+ + RN K + D T+ C G
Sbjct: 1 MTTWNLNGTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGK--DTYEDLTPERLEEIIDAFSTG 175
C +AP+ ++ D Y+ +T I+ G
Sbjct: 57 CKDAPVAIVYPSGDWYKQVTETVAHRIVKEHLAG 90
>gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
Length = 546
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M +LEIA V C +T C + + + +
Sbjct: 1 MDLAELLEIAA-----TERAKQKPIRVHCCTSTGCEAANSL----TVKKNLQKAVKEGHL 51
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
+ + V C G C P+V I + YE++TPE+ II+ + G
Sbjct: 52 EEQVEIIGVGCMGFCGKGPLVQIDPENTLYEEVTPEQAASIIEGINGG 99
>gi|120608788|ref|YP_968466.1| hypothetical protein Aave_0078 [Acidovorax citrulli AAC00-1]
gi|120587252|gb|ABM30692.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
Length = 130
Score = 50.5 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ +C C G + + + + + D + V C AC P++ +
Sbjct: 32 HILICTGPRCAQEGQAQALFDSLGEKFKAAGLNDGDLRVKRSRVSCFAACKGGPVMCVQP 91
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y D+TP ++ II+
Sbjct: 92 DGTWYYDVTPANMDRIIEQ 110
>gi|254410381|ref|ZP_05024160.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC
7420]
gi|196182587|gb|EDX77572.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC
7420]
Length = 101
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 91 GTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
H+ VC + C + LI+ ++I + L C
Sbjct: 3 KPEHHIFVCSSFRVNGNAKGVCQKKDSTNLIQYLESEITDRGLDAL------VSSTGCMN 56
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQ 176
C N P++M+ D Y ++ E ++EI+DA G+
Sbjct: 57 LCNNGPVMMVYPDNYWYGNVDEEAIDEILDALEDGK 92
>gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 619
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
S + + +++YP + QSAV+ L Q++ G+VS + +V+A
Sbjct: 2 SAATKSRFDREVAKYPADQKQSAVMACLAIVQQELGFVSAESEKVIAEH 50
>gi|261420011|ref|YP_003253693.1| ferredoxin [Geobacillus sp. Y412MC61]
gi|319766826|ref|YP_004132327.1| ferredoxin [Geobacillus sp. Y412MC52]
gi|261376468|gb|ACX79211.1| putative ferredoxin [Geobacillus sp. Y412MC61]
gi|317111692|gb|ADU94184.1| putative ferredoxin [Geobacillus sp. Y412MC52]
Length = 132
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
G + HV +C C+ G + + R +I D + C G
Sbjct: 1 MATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIA----RLGLDDAVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIID-AFSTGQG 177
C +A ++++ D Y +TPE+ +E++ G+
Sbjct: 57 CQDACVMIVYPDGVWYRLMTPEKAKEVVQRHLQNGEP 93
>gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
MP104C]
gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
MP104C]
Length = 572
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ G H VCG T C+ GC+ + ++I ++ L + E C G C
Sbjct: 23 ERPVDGYEYHALVCGGTGCVSSGCKSVKSALVDEIRKQGLEAK----VRVIETGCLGPCN 78
Query: 146 NAPMVMIGKD--TYEDLTPERLEEII-DAFSTGQGDT--IRPGPQIDR 188
PM+ + D YE +T +E ++ + G+ + P R
Sbjct: 79 LGPMITVYPDGIFYEKVTAGDVESVVTEHLREGRPVNRLLHRCPDTGR 126
>gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
Length = 538
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ + Q R + VC +T C+ ++++ ++ Q+ L +
Sbjct: 4 EELLAISEKEQELQQQVRYRIMVCSSTGCLSSRSDEILAALEAEVKQRGLE----NEVLV 59
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
++V C G C P+V I D Y+++TPE + I+D G+ +
Sbjct: 60 KKVGCLGLCAAGPIVSIQPDGILYKEMTPEDVPAILDRL-GGEPLEEKR 107
>gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422]
Length = 541
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ ++ C C+ G + + + + V C G C
Sbjct: 12 KERTNSKPTRIRCCMAAGCLSSGAV----AVKESLEKTKAEIGLTDKVEVRSVGCMGLCC 67
Query: 146 NAPMVMIGKD--------TYEDLTPERLEEIIDAFSTGQGDTIR 181
AP+V + + YE +TPE + I+ + +
Sbjct: 68 QAPLVQVDRSEVQGFIPLLYEKVTPEIVSSIVAELQGDEIKVQK 111
>gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
Length = 535
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ R + C C G ++ + + D V C G C
Sbjct: 12 REQAQRARFRILCCAAAGCQASGSLEIKRRLELVLSAAGKQADVD----VVPVGCMGLCG 67
Query: 146 NAPMVMIGK--DTYEDLTPERLEEIIDAFSTG 175
+ P+V + +E +TP EE++ A G
Sbjct: 68 HGPLVRLEPTGKVFERVTPADAEELVAALDQG 99
>gi|170289103|ref|YP_001739341.1| hypothetical protein TRQ2_1314 [Thermotoga sp. RQ2]
gi|166979950|sp|Q9X1D7|Y1420_THEMA RecName: Full=Protein TM_1420
gi|170176606|gb|ACB09658.1| conserved hypothetical protein [Thermotoga sp. RQ2]
Length = 75
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC + C L+G +++ + C G C V I
Sbjct: 3 VRVCMGSSCHLKGSYEVVRRFQ--------ELQKKYNFKLYGSLCFGNCSQGVCVEIDGR 54
Query: 156 TYEDLTPERLEEIIDA-FSTG 175
+ +TPE EEI+ G
Sbjct: 55 LFSRVTPENAEEILKKVLQNG 75
>gi|15644171|ref|NP_229220.1| hypothetical protein TM1420 [Thermotoga maritima MSB8]
gi|4981984|gb|AAD36490.1|AE001794_6 hypothetical protein TM_1420 [Thermotoga maritima MSB8]
Length = 77
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC + C L+G +++ + C G C V I
Sbjct: 5 VRVCMGSSCHLKGSYEVVRRFQ--------ELQKKYNFKLYGSLCFGNCSQGVCVEIDGR 56
Query: 156 TYEDLTPERLEEIIDA-FSTG 175
+ +TPE EEI+ G
Sbjct: 57 LFSRVTPENAEEILKKVLQNG 77
>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
[Coprothermobacter proteolyticus DSM 5265]
gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
[Coprothermobacter proteolyticus DSM 5265]
Length = 596
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G + + N+I D ++ C G C P+V+I
Sbjct: 6 HVMVCGGTGCTSSGSDNVAAAFVNEIK----KAGLDKEVAVIRTGCFGLCELGPVVVIYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + PE + EI++ G+ T
Sbjct: 62 EGVFYSKMKPEYVPEIVEEHLLKGRPVT 89
>gi|138895355|ref|YP_001125808.1| putative ferredoxin [Geobacillus thermodenitrificans NG80-2]
gi|134266868|gb|ABO67063.1| Putative ferredoxin [Geobacillus thermodenitrificans NG80-2]
Length = 198
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
+ + I + G + HV +C C+ G + +
Sbjct: 37 HLCCRGAFSFVEKPSVCRISFYHSSKRGDLVATWDLRGMKHHVLICNGGTCLRHGGDDVT 96
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEI 168
R +I D + C G C +A ++++ D Y +TPE+ +E+
Sbjct: 97 TAVREEIA----RLGLDDAVHTTRTRCNGRCQDACVMIVYPDGVWYRQMTPEKAKEV 149
>gi|313836940|gb|EFS74654.1| hypothetical protein HMPREF9621_00930 [Propionibacterium acnes
HL037PA2]
gi|314929469|gb|EFS93300.1| hypothetical protein HMPREF9607_00513 [Propionibacterium acnes
HL044PA1]
gi|314971446|gb|EFT15544.1| hypothetical protein HMPREF9622_01318 [Propionibacterium acnes
HL037PA3]
gi|328906873|gb|EGG26639.1| ferredoxin [Propionibacterium sp. P08]
Length = 263
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R H+ VC C +G L +V NK+ D + C C +A
Sbjct: 161 EFPPFRHHLLVCRGPRCCAQGAVALHDVLHNKL---VQADAIDTEVLVTVTGCMFPCNHA 217
Query: 148 PMVMIGKD-TYEDLTPERLEEIIDAFSTGQG-------DTIRP 182
P+V+I D LT + ++EI+ S Q P
Sbjct: 218 PLVVIWPDGKCLRLTEDNIDEIVRDLSAPQEASLTASMPPPTP 260
>gi|163784277|ref|ZP_02179193.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
gi|159880453|gb|EDP74041.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
Length = 111
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 87 LSPVGTRAHVQVCGTTP-----CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
++ + P C +G +K+ + + KP ++ C
Sbjct: 1 MAENNFKHVFVCMQNKPPGMPSCGSQGSDKIFMKFQEVLMSKPELMTK---MAVTPTGCL 57
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
G C+ P V++ D Y +TPE +EEII+
Sbjct: 58 GPCMFGPNVVVYPDAVWYGRVTPEDVEEIIEK 89
>gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
Length = 530
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
Q V C +T C + + + + + + V C G C
Sbjct: 12 QERDKQKPIRVHCCTSTGCEAANSLE----VKKNLQKAVKEGKLEDKVEVIGVGCMGFCG 67
Query: 146 NAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
P+V I YE++TP + II++ G
Sbjct: 68 KGPLVQIDPEDTLYEEVTPSQAASIINSLDGG 99
>gi|281412807|ref|YP_003346886.1| hypothetical protein Tnap_1390 [Thermotoga naphthophila RKU-10]
gi|281373910|gb|ADA67472.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC + C L+G +++ + C G C V I
Sbjct: 3 VRVCMGSSCHLKGSYEVVRRFQ--------ELQKKYNFKLYGSLCFGNCSQGVCVEIDGQ 54
Query: 156 TYEDLTPERLEEIIDA-FSTG 175
+ +TPE EEI+ G
Sbjct: 55 LFSRVTPENAEEILKRVLQNG 75
>gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
Length = 688
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VQVC T C LRG + ++ I ++ L D S+ C C + P V I
Sbjct: 593 RVQVCLGTSCHLRGAQDILTGLLGHIAEQGLTNAVDVRASF----CHEKCADGPTVQING 648
Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
D T E + +DA G
Sbjct: 649 DVMTHCTLESVIAALDAHLQN-PLPPTAGASAG 680
>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
Length = 626
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI------HQKPLHRNSDGTLSWEEVEC 140
+ V VC T C +G ++ + + ++ + L + D ++ C
Sbjct: 19 REKKLSGTSVYVCVGTGCTAKGALRVYDAFKRELEKRNLLGKVTLEKIDDDKVTLNRTGC 78
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS-SAPAGGL 197
G C + P+V M + Y ++T E + EI++ TI G I+R+ + P G
Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVTSEDVPEIVE-------KTILRGEPIERLFLTDPITGK 131
Query: 198 TS 199
Sbjct: 132 KV 133
>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 667
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 23/166 (13%)
Query: 33 YPPS-RCQSAVIPLLMRAQEQEGWVSRAAIEVVAN----ILDMAYIR-VLEIA-TFYTQF 85
YP R ++ +L Q + +S + E+ T Y
Sbjct: 499 YPNDVRTRARRAKILKETQSVDVLISPTENFHMRELYTKYFGAPLSHEAHEVLHTEYKHR 558
Query: 86 QLS-----------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ V + V VC T C +G +++E + +++ L
Sbjct: 559 KRIEEEEIEILPLPDVEDKVSVSVCLGTSCYSKGSYEILENLISLANKEE----WAKNLE 614
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI-IDAFSTGQGDT 179
+ C C AP V++ E T E+++E+ ++ +GD
Sbjct: 615 IKGTFCVENCGMAPNVVVNDKIVEQATIEKIKEVALNELGRKKGDP 660
>gi|261885720|ref|ZP_06009759.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
fetus subsp. venerealis str. Azul-94]
Length = 78
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
F F+ E +NE+ + R + V+P L Q +G + + + L + +
Sbjct: 2 KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGIIDAKDVLYLEKTLCIRSMF 59
Query: 75 VLEIATFYTQF 85
E FY+ F
Sbjct: 60 YAEAIGFYSMF 70
>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
Length = 613
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + VCG T C+ GC+++++ + ++ L D E C G C P+V+I
Sbjct: 22 KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77
Query: 153 GKD--TYEDLTPERLEEIID-AFSTGQG 177
+ Y ++ E ++E+++ G+
Sbjct: 78 YPEKTFYCNVQVEDIKELVERQLINGEK 105
>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
29799]
gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
29799]
Length = 600
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VC T C K+IE ++ + + + C G C P+VMI
Sbjct: 7 HILVCTGTGCTSSNSLKIIEAFERELEAQGMA----KEAQVVKTGCFGLCAMGPIVMIYP 62
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y +TP + EI+
Sbjct: 63 EGACYTKVTPADVPEIVSE 81
>gi|326314920|ref|YP_004232592.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323371756|gb|ADX44025.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 131
Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ +C C G + + + + + + + V C AC P++ +
Sbjct: 33 HLLICTGPRCAQEGQAQALFDSLGEKFKAAGLNDGELRVKRSRVSCFAACKGGPVMCVQP 92
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y D+TP+ ++ II+
Sbjct: 93 DGTWYYDVTPDNMDRIIEQ 111
>gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Geobacter metallireducens GS-15]
gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Geobacter metallireducens GS-15]
Length = 569
Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
Q R + VC TPC+ G + +++ R + D + C G C
Sbjct: 14 QERQERFRCRIMVCAGTPCLSAGAQTVLDSLRKALA----ESRLDAEIEAVASGCMGPCS 69
Query: 146 NAPMVMIGKD-----TYEDLTPERLEEIIDAFSTGQGDT 179
P+V + + +E +TPE +I+ + + G+
Sbjct: 70 RGPLVKVRQQGKKEIIFERVTPELARQILLSLAKGRRPP 108
>gi|116329721|ref|YP_799440.1| ferredoxin related-protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116332604|ref|YP_802321.1| ferredoxin related-protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116122614|gb|ABJ80507.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116127471|gb|ABJ77563.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 397
Score = 48.2 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 33/185 (17%)
Query: 16 FSFSEESAIWVNEVIS----RYPPSRCQSA--------VIPLL--MRAQEQEGW--VSRA 59
F F+ + ++ + +YP + ++A + P+L AQ G +
Sbjct: 200 FLFNGKLIQKISYITKEYSLKYPWIKIETASHFGPDPILYPILDERIAQALSGKDALPCD 259
Query: 60 AIEVVANILDMA-----------YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG 108
E +I + +R LE T + HV +C +T C +G
Sbjct: 260 NCEYRVSIPGLKNKVGGLNSLLWSMRHLETHTQAAPHEFPHRNLIKHVYICESTNCASKG 319
Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLE 166
LI R+ I + + + C G C P +++ D Y+ + E
Sbjct: 320 SISLIHRIRSCIKKHGKQTD----FRVSKSSCLGRCGEGPTLVVYPDGIWYQRVNENDAE 375
Query: 167 EIIDA 171
EI+
Sbjct: 376 EIVTE 380
>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A3 str. Loch Maree]
gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum A3 str. Loch Maree]
Length = 631
Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C G +K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSAGSDKIVENLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|196249200|ref|ZP_03147899.1| putative ferredoxin [Geobacillus sp. G11MC16]
gi|196211429|gb|EDY06189.1| putative ferredoxin [Geobacillus sp. G11MC16]
Length = 132
Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
G + HV +C C+ G + + R +I D + C G
Sbjct: 1 MATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIA----RLGLDDAVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEI 168
C +A ++++ D Y +TPE+ +E+
Sbjct: 57 CQDACVMIVYPDGVWYRQMTPEKAKEV 83
>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Thermoanaerobacter tengcongensis MB4]
gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Carboxydibrachium pacificum DSM 12653]
gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Thermoanaerobacter tengcongensis MB4]
gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Carboxydibrachium pacificum DSM 12653]
Length = 596
Score = 48.2 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G +++ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSGSDEVAERFIEEIK----KAGLDKEILVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQG 177
+ Y + PE + EI++ G+
Sbjct: 62 EGVFYSRVKPEYVPEIVEEHLLKGRP 87
>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
Length = 602
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T + +C C+ G E ++ + +K N T++ E C GAC P+++
Sbjct: 4 TTNTILICAGGACISAG----EESVKDVLERKIKEYNLQDTINIVETGCMGACSLGPIMV 59
Query: 152 IGKD--TYEDLTPERLEEIIDA-FSTGQ 176
I + Y+ LTPE E+I++ G+
Sbjct: 60 IHPEGVYYQKLTPEAAEKIVEEHLLKGR 87
>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
[Desulfatibacillum alkenivorans AK-01]
Length = 633
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
Q+ + + VC T C++ G + + + + + + + CQG C
Sbjct: 28 IQMRQDPNQVQIVVCHGTGCLVSGSPAVTRAFKKVLGETDIE--AKVMPGVKTTGCQGFC 85
Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDA-FSTGQG 177
P +M YE ++P+ +E+I++ G+
Sbjct: 86 SRGPLVTIMPQGIFYERVSPKDVEDIVEQTVKNGKP 121
>gi|315103067|gb|EFT75043.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R H+ C C G L ++K+ D + C C A
Sbjct: 120 EFPPFRHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYA 174
Query: 148 PMVMIGKD-TYEDLTPERLEEIIDAF 172
P++++ D LT + L+ I++
Sbjct: 175 PLIVVWPDGRCIQLTADNLDRIVEDL 200
>gi|282854371|ref|ZP_06263708.1| conserved hypothetical protein [Propionibacterium acnes J139]
gi|282583824|gb|EFB89204.1| conserved hypothetical protein [Propionibacterium acnes J139]
gi|314922939|gb|EFS86770.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
gi|314966391|gb|EFT10490.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
gi|314980870|gb|EFT24964.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
gi|315090186|gb|EFT62162.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
gi|315093539|gb|EFT65515.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
gi|327326990|gb|EGE68771.1| hypothetical protein HMPREF9341_02065 [Propionibacterium acnes
HL103PA1]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R H+ C C G L ++K+ D + C C A
Sbjct: 120 EFPPFRHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYA 174
Query: 148 PMVMIGKD-TYEDLTPERLEEIIDAF 172
P++++ D LT + L+ I++
Sbjct: 175 PLIVVWPDGRCIQLTADNLDRIVEDL 200
>gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
Length = 176
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + VCG T C+ GC+++++ + ++ L D E C G C P+V+I
Sbjct: 22 KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77
Query: 153 GKD--TYEDLTPERLEEIID-AFSTGQG 177
+ Y ++ E ++E+++ G+
Sbjct: 78 YPEKTFYCNVQVEDIKELVERQLINGEK 105
>gi|50842146|ref|YP_055373.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes
KPA171202]
gi|289426196|ref|ZP_06427942.1| conserved hypothetical protein [Propionibacterium acnes SK187]
gi|289426919|ref|ZP_06428645.1| conserved hypothetical protein [Propionibacterium acnes J165]
gi|50839748|gb|AAT82415.1| conserved protein, putative NADH:ubiquinone oxidoreductase
[Propionibacterium acnes KPA171202]
gi|289153361|gb|EFD02076.1| conserved hypothetical protein [Propionibacterium acnes SK187]
gi|289160008|gb|EFD08186.1| conserved hypothetical protein [Propionibacterium acnes J165]
gi|313791559|gb|EFS39677.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
gi|313802354|gb|EFS43580.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
gi|313808224|gb|EFS46698.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
gi|313812493|gb|EFS50207.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
gi|313818990|gb|EFS56704.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
gi|313820820|gb|EFS58534.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
gi|313822418|gb|EFS60132.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
gi|313825787|gb|EFS63501.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
gi|313839122|gb|EFS76836.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
gi|314925577|gb|EFS89408.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
gi|314959895|gb|EFT03997.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
gi|314962284|gb|EFT06385.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
gi|314979250|gb|EFT23344.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|314986834|gb|EFT30926.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
gi|314989393|gb|EFT33484.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
gi|315077371|gb|EFT49431.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
gi|315083998|gb|EFT55974.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
gi|315085201|gb|EFT57177.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
gi|315089007|gb|EFT60983.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|315107158|gb|EFT79134.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
gi|327330958|gb|EGE72702.1| hypothetical protein HMPREF9337_01525 [Propionibacterium acnes
HL096PA3]
gi|327331165|gb|EGE72905.1| hypothetical protein HMPREF9344_01820 [Propionibacterium acnes
HL097PA1]
gi|327447449|gb|EGE94103.1| hypothetical protein HMPREF9568_00745 [Propionibacterium acnes
HL013PA2]
gi|327455220|gb|EGF01875.1| hypothetical protein HMPREF9584_01176 [Propionibacterium acnes
HL092PA1]
gi|328752943|gb|EGF66559.1| hypothetical protein HMPREF9563_02196 [Propionibacterium acnes
HL020PA1]
gi|332675071|gb|AEE71887.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes
266]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R H+ C C G L ++K+ D + C C +A
Sbjct: 120 EFPPFRHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHA 174
Query: 148 PMVMIGKD-TYEDLTPERLEEIIDAF 172
P++++ D LT + L+ I++
Sbjct: 175 PLIVVWPDGRCIQLTADNLDRIVEDL 200
>gi|326789577|ref|YP_004307398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
lentocellum DSM 5427]
gi|326540341|gb|ADZ82200.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
lentocellum DSM 5427]
Length = 102
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHRNSD----GTLSWEEVECQGA 143
V + HV +C T C + G +K +N I + + D G + C G
Sbjct: 2 VQPKYHVFIC--TSCRINGQQKGFCHSKNSIGIVERFMEEIEDRGLSGDVVINNTGCFGI 59
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C P+V++ + Y +++ E +E I++
Sbjct: 60 CDKGPIVVVYPEGAWYGNVSEEDVERIVEE 89
>gi|312881026|ref|ZP_07740826.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
gi|310784317|gb|EFQ24715.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
Length = 94
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
G R + +C + C RG +K +EV R + + +S C+GAC P
Sbjct: 13 EKGERVVLTLCMGSSCFARGNQKNLEVIRQFLKDHRMEDR----VSLVGSRCEGACTQGP 68
Query: 149 MVMIGKDTYEDLTPERLEEIID 170
+ IG + + E L +++
Sbjct: 69 NLRIGDRLFPRINQEDLPALLE 90
>gi|297530030|ref|YP_003671305.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3]
gi|297253282|gb|ADI26728.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3]
Length = 132
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
G + HV +C C+ G + + R +I D + C G
Sbjct: 1 MATWDLRGMKHHVLICNGGTCLRHGGDDVTMAVREEIA----RLGLDDAVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
C +A ++++ Y +TPER +E++ A ++
Sbjct: 57 CQDACVMIVYPQGVWYRQMTPERAKEVVRAHLDEGLPLLKWATY 100
>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 624
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
++ + Y + + +C T C+ G K+ + +++I + L
Sbjct: 5 EMETCRLTDYADLESYRANLQAKKTENKVITICCGTGCLAYGASKIGQSFKDEIKNQGLE 64
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII-DAFSTG 175
GT+S + CQG C P+V+I + Y+ + PE + I+ +
Sbjct: 65 ----GTVSVKFTGCQGFCERGPLVVIRPENILYQRVKPEDVSRIVTETIRND 112
>gi|12644506|sp|O87688|CBIW_BACME RecName: Full=Putative 2Fe-2S ferredoxin
gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus megaterium]
Length = 127
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
GT+ HV +C + CM +G E+ + RNK+ N D + C G C +AP+
Sbjct: 9 NGTKHHVLICNGSSCMRKGGEEATQAIRNKVA----ELNLDEAVHTTRT-CNGRCKDAPV 63
Query: 150 VMIGK--DTYEDLTPERLEEIIDAFSTG 175
++ D Y+ +T + I++ G
Sbjct: 64 AIVYPSGDWYKQVTEKVAHRIVEEHLAG 91
>gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
Length = 552
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M + +A Q R + C +TPC+ G + E + I + L
Sbjct: 1 MNRTELYAMAQAELDRQQK---FRCRLLCCASTPCISSGGTAVYEAVKQAIEAEGLQAEV 57
Query: 130 DGTLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
+ + C G C P++ + YE +TPE I+D
Sbjct: 58 EAVAT----GCVGPCSRGPLITVKMEGREDVVYEQVTPEMAARILDK 100
>gi|295130232|ref|YP_003580895.1| hypothetical protein HMPREF0675_3726 [Propionibacterium acnes
SK137]
gi|291376839|gb|ADE00694.1| conserved hypothetical protein [Propionibacterium acnes SK137]
gi|313763904|gb|EFS35268.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
gi|313771394|gb|EFS37360.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
gi|313811310|gb|EFS49024.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
gi|313814810|gb|EFS52524.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
gi|313828131|gb|EFS65845.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
gi|313830937|gb|EFS68651.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
gi|313833363|gb|EFS71077.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
gi|314915108|gb|EFS78939.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
gi|314918738|gb|EFS82569.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
gi|314920539|gb|EFS84370.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
gi|314932213|gb|EFS96044.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
gi|314954671|gb|EFS99077.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
gi|314958507|gb|EFT02609.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
gi|314968282|gb|EFT12381.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
gi|314973823|gb|EFT17919.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
gi|314976474|gb|EFT20569.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
gi|314983413|gb|EFT27505.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
gi|315080116|gb|EFT52092.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
gi|315096441|gb|EFT68417.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
gi|315099008|gb|EFT70984.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
gi|315100913|gb|EFT72889.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
gi|315108130|gb|EFT80106.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
gi|327326847|gb|EGE68630.1| hypothetical protein HMPREF9338_01721 [Propionibacterium acnes
HL096PA2]
gi|327442950|gb|EGE89604.1| hypothetical protein HMPREF9570_02455 [Propionibacterium acnes
HL043PA1]
gi|327445074|gb|EGE91728.1| hypothetical protein HMPREF9571_02059 [Propionibacterium acnes
HL043PA2]
gi|327450053|gb|EGE96707.1| hypothetical protein HMPREF9581_02500 [Propionibacterium acnes
HL087PA3]
gi|327455394|gb|EGF02049.1| hypothetical protein HMPREF9586_01431 [Propionibacterium acnes
HL083PA2]
gi|328752721|gb|EGF66337.1| hypothetical protein HMPREF9579_02263 [Propionibacterium acnes
HL087PA1]
gi|328759360|gb|EGF72976.1| hypothetical protein HMPREF9588_00205 [Propionibacterium acnes
HL025PA2]
gi|328760314|gb|EGF73885.1| hypothetical protein HMPREF9343_01978 [Propionibacterium acnes
HL099PA1]
Length = 206
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R H+ C C G L ++K+ D + C C +A
Sbjct: 120 EFPPFRHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHA 174
Query: 148 PMVMIGKD-TYEDLTPERLEEIIDAF 172
P++++ D LT + L+ I++
Sbjct: 175 PLIIVWPDGRCIQLTADNLDRIVEDL 200
>gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens
PCA]
gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens
PCA]
gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
[Geobacter sulfurreducens KN400]
Length = 570
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M + +A R + VC TPC+ G +++ + Q
Sbjct: 1 MNPADLHAMAREEQAR---QEALRCRIMVCAGTPCLSAGALAVLDA----LRQAVEESRL 53
Query: 130 DGTLSWEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDT 179
D + C G C P+V + + YE +TPE +I+ + G+
Sbjct: 54 DAEIEAVSTGCMGPCSRGPLVKVAVQGKPEIVYERVTPELARQILYSVVKGRRPP 108
>gi|9955119|pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
Aquifex Aeolicus
gi|9955120|pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
Aquifex Aeolicus
gi|24158927|pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
Aeolicus
gi|24158928|pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
Aeolicus
Length = 110
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG ++ + KI P T C AC+ P+V++ D Y +
Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLF---MTTVITPTGCMNACMMGPVVVVYPDGVWYGQV 77
Query: 161 TPERLEEIIDA-FSTGQG 177
PE ++EI++ G+
Sbjct: 78 KPEDVDEIVEKHLKGGEP 95
>gi|162457511|ref|YP_001619878.1| hypothetical protein sce9225 [Sorangium cellulosum 'So ce 56']
gi|161168093|emb|CAN99398.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length = 127
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 84 QFQLSPVGTRAHVQVCGTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
Q + P C RG E + + + ++ L + S C
Sbjct: 1 MPQRKRYLFVCVNRRPDGVPKGSCAQRGAEGIHVQLKAALAERGLAKVEARACS---ASC 57
Query: 141 QGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQ 176
C P++ + D Y +TP + EI+DA ++G+
Sbjct: 58 LDVCWAGPVIAVEPDGYFYGRVTPADVPEIVDALASGR 95
>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
Length = 602
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
+ +C C+ G E ++ + +K N T++ E C GAC P+++
Sbjct: 4 ATNTILICAGGACISAG----EESVKDVLERKIKEYNLQETVNIVETGCMGACSLGPIMV 59
Query: 152 IGKD--TYEDLTPERLEEIIDA-FSTGQ 176
I + Y+ LTPE E+I++ G+
Sbjct: 60 IHPEGVYYQKLTPEAAEKIVEEHLLKGR 87
>gi|71909767|ref|YP_287354.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB]
gi|71849388|gb|AAZ48884.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV VC C G + +++I L N G + + C G C N
Sbjct: 5 KHHVFVCTNQREGGEQCCNNVGGSDMFAYAKDRIG--ALKLNGAGAVRINKAGCLGRCDN 62
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
P++++ + Y + E +EEII + G+
Sbjct: 63 GPVMVVYPEETWYSFIDKEDVEEIIQEHLIGGK 95
>gi|12644516|sp|O66511|FER2_AQUAE RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=AaFd4
Length = 111
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG ++ + KI P T C AC+ P+V++ D Y +
Sbjct: 22 SCAQRGSREVFQAFMEKIQTDPQLF---MTTVITPTGCMNACMMGPVVVVYPDGVWYGQV 78
Query: 161 TPERLEEIIDA-FSTGQG 177
PE ++EI++ G+
Sbjct: 79 KPEDVDEIVEKHLKGGEP 96
>gi|220931056|ref|YP_002507964.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
gi|219992366|gb|ACL68969.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
Length = 80
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ + V+VC T C L G +I+ +N + + + V C +C P
Sbjct: 1 MKEKITVEVCVGTSCHLMGSPAIIDYLKN-LPDNIKDKIE-----IKHVSCMNSCDRGPR 54
Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
VM+ + TPER++E I
Sbjct: 55 VMVNDTVIYNATPERVKEAITEI 77
>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
Length = 623
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
+ VC T C G K+ + I D + ++ C G
Sbjct: 19 REERLKEKKIYVCVGTGCTANGSRKVYKKFVEVITNKGLDVKVEAEDEHPTVKKTGCCGL 78
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C P+V I + TY +T + +EEI++
Sbjct: 79 CSLGPLVKITPEGITYHHVTVDDVEEIVEK 108
>gi|24217226|ref|NP_714709.1| putative cbiX protein [Leptospira interrogans serovar Lai str.
56601]
gi|45655717|ref|YP_003526.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|24202278|gb|AAN51724.1| ferredoxin-related protein [Leptospira interrogans serovar Lai str.
56601]
gi|45602688|gb|AAS72163.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 33/185 (17%)
Query: 16 FSFSEESAIWVNEVIS----RYPPSRCQSA--------VIPLL--MRAQEQEG--WVSRA 59
F F + + + +YP + ++A + P+L +Q G +
Sbjct: 193 FLFYGKLIKKIYHIAKEFSEKYPWIKIETASHFGPDPTLYPILDERISQALSGAATLPCD 252
Query: 60 AIEVVANILDMAY-----------IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG 108
E +I + +R LE T + + H+ VC + C+ +G
Sbjct: 253 NCEYRVSIPGLKSKVGGLNSLLWSMRHLETHTQAAPHEFPHRNFKKHIFVCDSVDCVNQG 312
Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLE 166
LI R+ I + + + C G C P V+I D Y+ ++ + +
Sbjct: 313 SISLIHKIRSFIRKHGRQSD----FRVSKSSCLGRCGEGPTVVIYPDGIWYQRVSEDDAK 368
Query: 167 EIIDA 171
E++D
Sbjct: 369 ELVDE 373
>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
Length = 610
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T + +C C+ G E + + K+ D +S E C GAC P+ +
Sbjct: 4 TTNTILICAGGGCISAGEESVKQAFERKLK----EYGLDTVVSVVETGCMGACSLGPLAI 59
Query: 152 IGKD--TYEDLTPERLEEIIDA 171
+ D Y+ LTP+ E+I++
Sbjct: 60 VYPDGVYYQKLTPKAAEKIVEE 81
>gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
Length = 537
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M +L IA + ++ C C G + ++ + +
Sbjct: 1 MDLNELLAIAEHENAMRR-----SICIRCCTALGCQSAGSL----SLKQRLEEAVAEVDR 51
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181
+ V C G C + P+V + + YE + I+ A G+ +
Sbjct: 52 T-DIEVMGVGCMGLCGHGPLVRVDPEGTLYEHVRAADAPSIVAALDGGEATAPK 104
>gi|239905421|ref|YP_002952160.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239795285|dbj|BAH74274.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 685
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T+ V+VC T C LRG + ++ I + L D S+ C C P V
Sbjct: 588 TKVRVRVCLGTSCHLRGAQDILTGMLKHIVENGLENAVDVRASF----CFEQCAKGPTVE 643
Query: 152 IGKDTYEDLTPERLEEIIDA-FSTGQGDTIRP 182
+ + T E + +DA +P
Sbjct: 644 MDGEVMTHCTLESVLAALDAHLRNPLPQPTKP 675
>gi|332298929|ref|YP_004440851.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168]
gi|332182032|gb|AEE17720.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168]
Length = 81
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC + C RG EV + + + L ++ C+ C N P V I
Sbjct: 3 TITVCMGSSCFSRGNSANAEVIQRFLTENDLQDK----VTLRGCLCESECKNGPNVRIDG 58
Query: 155 DTYEDLTPERLEEII 169
Y ++TPE L +++
Sbjct: 59 KLYTNMTPESLVDLL 73
>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
Length = 614
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
V +CG T C+ G + + + + + C G C P+V +
Sbjct: 27 VLICGGTGCISSGSNDIAAKMEER----VKALGKEDEIRVIKTGCFGFCEKGPIVKMLPD 82
Query: 154 KDTYEDLTPERLEEIIDA 171
Y ++TPE +++++D
Sbjct: 83 NTFYTEVTPEDVDKLVDK 100
>gi|309389843|gb|ADO77723.1| NADH-quinone oxidoreductase chain E [Halanaerobium praevalens DSM
2228]
Length = 79
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
+++C TPC L G L+E ++ ++ T + C C AP++
Sbjct: 2 ADNILKICIGTPCHLMGAADLLEAVE-ELDLDLKNQIEIKT-THCIDNC---CDKAPVIK 56
Query: 152 IGKDTYEDLTPERLEEIIDA 171
Y+DL PE+L +II
Sbjct: 57 FNGKIYQDLNPEKLYKIIRK 76
>gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
Length = 659
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ V+VC T C L G L ++K+ Q+ + ++ C C +P
Sbjct: 576 NTAKKRVVKVCVGTCCYLSGAYDLFSTLKDKLSQEDFKDKVELAATF----CFENCTQSP 631
Query: 149 MVMIGKDTYEDLTPERL-EEIIDA 171
VM+ + T E++ EI+
Sbjct: 632 CVMVDDVLIGEATVEKVINEILKQ 655
>gi|212550910|ref|YP_002309227.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212549148|dbj|BAG83816.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 100
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ VC + C +G L++ + + N D ++ C
Sbjct: 2 KKPNYTILVCNSYRVTGDAQGFCNKQGAVSLLQYITEECADR----NIDAVVTT--TACL 55
Query: 142 GACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQ 176
C P+V Y +T ++++EI+DA G+
Sbjct: 56 SVCSQGPVVVVQPNNYWYGGVTKDKVDEILDALEEGK 92
>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
17241]
gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
17241]
Length = 595
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G K+IE +I + + C G C P+V++
Sbjct: 5 HVLVCGGTGCTSSGSVKIIEEFEREIAA----TGLTDEVKVVKTGCFGLCALGPVVIVYP 60
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + E ++EI+D G+
Sbjct: 61 EGSFYSRVKAEDVKEIVDEHLLKGR 85
>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum NCTC 2916]
gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A2 str. Kyoto]
gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum NCTC 2916]
gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A2 str. Kyoto]
Length = 631
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSYKIVENLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|296126169|ref|YP_003633421.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family,
DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
[Brachyspira murdochii DSM 12563]
gi|296017985|gb|ADG71222.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family,
DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
[Brachyspira murdochii DSM 12563]
Length = 89
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ ++VC C ++G L+E R+ + +SDG L E EC C NA V+I
Sbjct: 6 KTVIEVCVGLHCSMKGSYALLEAIRSHYDLQIGVPSSDGMLLKEM-ECMHNCHNAVPVLI 64
Query: 153 GKDTYEDLTPERLEEIIDAF 172
+ + + + I+A
Sbjct: 65 NGTECTKSSFKSVVKYIEAI 84
>gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Microcoleus chthonoplastes PCC 7420]
gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Microcoleus chthonoplastes PCC 7420]
Length = 538
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
V C +T C + + + + V C G C P+V I
Sbjct: 21 RVHCCTSTGCQAANSLG----VKKNLEGAVKAADLGDRVQVVGVGCMGFCGRGPLVEIDP 76
Query: 154 -KDTYEDLTPERLEEIIDAFSTG 175
YE++TP+ II++ + G
Sbjct: 77 QDKLYEEVTPDDAASIIESLNGG 99
>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
Length = 626
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVEC 140
+ VC T C +G K+ ++ ++ L + D ++ C
Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C + P+V M + Y ++ PE + EI+D + +G+ I
Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR-TVLKGEPIER 121
>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
Length = 620
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
MA I + ++ Y + + + VCG T C+ G +++E + ++ K L+ +
Sbjct: 1 MAKINIEAVSAKY---KENYKNINQRIIVCGGTGCIAGGSLEVLEAFKKELSAKGLNVCT 57
Query: 130 ---DGT--LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
DG + CQG C P+V +G Y + + EI++
Sbjct: 58 QITDGCRGTYLSKSGCQGFCAAGPLVSVGDIFYTKVKESDVSEIVEK 104
>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Coprococcus catus GD/7]
Length = 594
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G E LI + + ++ + L ++ + C G C P+++I
Sbjct: 5 HVLVCGGTGCTSSGSETLISLLQEELKKNGLE----NEVAIVKTGCHGLCAQGPVMVIYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDT 179
D Y + PE + EI+ + G+ T
Sbjct: 61 DATFYSMVKPEDIPEIVSEHLLKGRVVT 88
>gi|326204435|ref|ZP_08194293.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM
2782]
gi|325985467|gb|EGD46305.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM
2782]
Length = 113
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWE----EVECQGA 143
V + HV VC + C + G +K + + QK + D L+ E C G
Sbjct: 13 VSPKYHVFVCAS--CRINGTQKGFCHSKGSVALIQKFMEEIDDNDLTGEVMVTNTGCFGI 70
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQGDT 179
C P+V+I + Y ++T + +E I++ G+
Sbjct: 71 CDKGPVVVIYPEGTWYGNVTEDDVETIVEQHLIGGEKVK 109
>gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 604
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ VC T C+ G ++ + ++ + + T S C G C
Sbjct: 1 MTTMNKSLIHLLLVCCGTGCVANGAREVYQALKDNLTSDDKAVLAA-TTSARATGCHGLC 59
Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
P V I TY + + EI++ G+
Sbjct: 60 AQGPFVRILPEDITYCRVKAADIPEIVEKTLKQGE 94
>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
Length = 626
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVEC 140
+ VC T C +G K+ ++ ++ L + D ++ C
Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C + P+V M + Y ++ PE + EI+D + +G+ I
Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR-TVLKGEPIER 121
>gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
Length = 538
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + ++A Q++ V+VC C G ++E ++ G+
Sbjct: 1 MHLEDLAEQAAQYRNEDAHIEREVRVCVAASCQSSGSLPVLEALKS-----ACDTQGAGS 55
Query: 133 LSWEEVECQGACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171
+ V C G C P+V + Y D+TP+ +I+ +
Sbjct: 56 CKVKGVGCMGLCSAGPLVAVADKDCALNESVLYRDVTPDDAPDIMAS 102
>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
Length = 626
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVEC 140
+ VC T C +G K+ ++ ++ L + D ++ C
Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C + P+V M + Y ++ PE + EI+D + +G+ I
Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR-TVLKGEPIER 121
>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
Length = 626
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVEC 140
+ VC T C +G K+ ++ ++ L + D ++ C
Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C + P+V M + Y ++ PE + EI+D + +G+ I
Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR-TVLKGEPIER 121
>gi|124262989|ref|YP_001023459.1| hypothetical protein Mpe_B0451 [Methylibium petroleiphilum PM1]
gi|124263023|ref|YP_001023493.1| hypothetical protein Mpe_B0486 [Methylibium petroleiphilum PM1]
gi|124262235|gb|ABM97224.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
gi|124262269|gb|ABM97258.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 115
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ +C C G +++ + + + V C AC P++ +
Sbjct: 16 HILICTGPRCTKDGQSQVLFDSLGDKFKAVGLHQGELRVKRSRVSCFAACNGGPVMCVQP 75
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y D+TP+ ++ II+
Sbjct: 76 DGVWYYDVTPQNMDRIIEQ 94
>gi|307352421|ref|YP_003893472.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM
11571]
gi|307155654|gb|ADN35034.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM
11571]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P + + + ++ R+ G + C G C
Sbjct: 2 QKPKYHIFVCSSSKPNGQQKGYCHSQAGVDILMRFVEEIDERDLGGEVFVNNTGCFGICD 61
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
P+V++ D Y +TP+ +EEI+D G
Sbjct: 62 KGPIVVVYPDNVWYGSVTPDDVEEILDEHIEG 93
>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. Langeland]
gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. Langeland]
gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum F str. 230613]
Length = 631
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSDKIVESLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|307688103|ref|ZP_07630549.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGTLSWE----EVECQGA 143
V + H+ VC T C + G +K ++ + +D LS E C G
Sbjct: 2 VALKHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMITNTGCFGI 59
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
C P+V++ + Y ++T + + EI+++ G+
Sbjct: 60 CAQGPVVVVYPEGVWYGNVTEDDVAEIVESHIENGE 95
>gi|302875665|ref|YP_003844298.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
gi|302578522|gb|ADL52534.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
cellulovorans 743B]
Length = 103
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGTLSWE----EVECQGA 143
V + H+ VC T C + G +K ++ + +D LS E C G
Sbjct: 3 VALKHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMITNTGCFGI 60
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
C P+V++ + Y ++T + + EI+++ G+
Sbjct: 61 CAQGPVVVVYPEGVWYGNVTEDDVAEIVESHIENGE 96
>gi|332830634|gb|EGK03240.1| hypothetical protein HMPREF9455_00628 [Dysgonomonas gadei ATCC
BAA-286]
Length = 101
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 16/97 (16%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ VC + C +G ++ + + ++ C
Sbjct: 2 KKPDYMIMVCNSYRVAGDAQGFCNKQGATSFVQYISEECSDRAINAV------VTTTACL 55
Query: 142 GACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQ 176
C P+V Y +T ++L+EI+DA G+
Sbjct: 56 SVCSQGPVVVIQPNNFWYGGVTEDKLDEILDALEEGK 92
>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 596
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +++ + +I K L D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEIQVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + E + EI++ G+
Sbjct: 62 EGVFYSRVKEEYVPEIVEEHLLKGR 86
>gi|295704477|ref|YP_003597552.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
gi|294802136|gb|ADF39202.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
Length = 130
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ T+ HV +C + C G E++ + R++I + L D + C G
Sbjct: 1 MATWNLDTTKHHVLICNGSSCNRFGAEEVTQAIRSEIANQEL----DPYIHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181
C + +V+ D Y+D+ P+ +E+I++ Q +
Sbjct: 57 CHDKCVVISYPDGIWYKDVKPQDAQELINSLKKDQPFVEK 96
>gi|56420345|ref|YP_147663.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
gi|56380187|dbj|BAD76095.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
Length = 132
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
G + HV +C C+ G + + R +I D + C G
Sbjct: 1 MATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIA----RLGLDDAVHTTRTRCNGR 56
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C +A ++++ Y +TPER +E++ A
Sbjct: 57 CQDACVMIVYPQGIWYRQMTPERAKEVVRA 86
>gi|119942|sp|P07324|FER2_CLOPA RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=2FeCpFd
gi|40563|emb|CAA79492.1| [2Fe-2S] ferredoxin [Clostridium pasteurianum]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWE----EVECQGA 143
V + H+ VC T C L G ++ +N +I + + LS E C G
Sbjct: 2 VNPKHHIFVC--TSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSSEVMVNNTGCFGI 59
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
C P+V++ + Y ++T + +EEI+++ G+
Sbjct: 60 CSQGPIVVVYPEGVWYGNVTADDVEEIVESHIENGE 95
>gi|226323628|ref|ZP_03799146.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758]
gi|225207812|gb|EEG90166.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758]
Length = 64
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
+E+I+ + +R + ++IP++ QE+ ++ + VA + + +
Sbjct: 2 LDASYYQKTDEIIAMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKQIGITEAKAYS 59
Query: 78 IATF 81
+A+F
Sbjct: 60 VASF 63
>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
065]
Length = 631
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSDKIVENLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|307718919|ref|YP_003874451.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM
6192]
gi|306532644|gb|ADN02178.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM
6192]
gi|315187123|gb|EFU20880.1| hypothetical protein SpithDRAFT_0488 [Spirochaeta thermophila DSM
6578]
Length = 84
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ + VC + C RG ++V R + + + D + E C G C P+
Sbjct: 1 MTEDRSIVVCMGSSCHARGNALTVKVIRAWL--EEHGLDQDVEVRGEL--CSGRCKEGPV 56
Query: 150 VMIGKDTYEDLTPERLEEII 169
V IG YE + PE + +I+
Sbjct: 57 VRIGNRIYERVQPEAVPDIL 76
>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
Length = 597
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV +CG T C G ++++ R ++ ++ D + C G C P+V++
Sbjct: 7 HVLICGGTGCTSSGSHEVMDAFREEL----RNQKLDREVLIVPTGCHGMCEMGPIVVVYP 62
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDT 179
+ Y + E ++EI+ + G+
Sbjct: 63 EGTFYCRVKAEDVKEIVSEHLLKGRIVP 90
>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum B1 str. Okra]
gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum B1 str. Okra]
Length = 631
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSDKIVENLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +++ + +I K L D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSNSDRVAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + E + EI++ G+
Sbjct: 62 EGVFYSRVKEEYVPEIVEEHLLKGR 86
>gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
Length = 562
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ H+ VCG T C ++++ + + + + + + C G C P
Sbjct: 30 SESHKYHILVCGGTACESNKSDEIVRLLKEYAEKNGIE----NDVLVVKTGCFGFCSQGP 85
Query: 149 MV--MIGKDTYEDLTPERLEEIIDA 171
+V M G+ Y + P ++II+
Sbjct: 86 VVKIMPGRVFYTHVEPAHAKDIIEK 110
>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Slackia heliotrinireducens DSM 20476]
gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Slackia heliotrinireducens DSM 20476]
Length = 597
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
+ VC T C+ G + + ++ + ++ + C G C P+V
Sbjct: 7 KILVCCGTSCIANGALDVADAIEQELAARGINGVE---VCVTRTGCSGECEQGPIVRFMP 63
Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
Y +T I+D+ +G+ ++
Sbjct: 64 RDLMYYRVTVRDAAAIVDSL---EGEPVK 89
>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +K+ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSDSDKVAERFTEEIK----KAGLDKEVLVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + P+ + EI++ G+
Sbjct: 62 EGVFYSRVKPDYVPEIVEEHLLKGRPVK 89
>gi|281358775|ref|ZP_06245250.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
gi|281314730|gb|EFA98768.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
Length = 79
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + +C + C RG ++ +++ + + + C G C P + I
Sbjct: 2 KHTIVICMGSSCFARGNKRNLKIIEEYLAGHRI------DCTLTGRGCVGKCRTGPNLSI 55
Query: 153 GKDTYEDLTPERLEEIIDA 171
+ +E + E L ++++A
Sbjct: 56 DGENFERVDSESLIDLLEA 74
>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
200]
gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
200]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +K+ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSDSDKVAERFTEEIK----KAGLDKEVLVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + P+ + EI++ G+
Sbjct: 62 EGVFYSRVKPDYVPEIVEEHLLKGRPVK 89
>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. ATCC 3502]
gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. ATCC 19397]
gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. Hall]
gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
[Clostridium botulinum A str. ATCC 3502]
gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. ATCC 19397]
gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum A str. Hall]
Length = 631
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++E + +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSDKIVENLKEEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y +TPE +EI + + + +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVTPEDAKEIAEKHL-LKDEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +K+ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSDSDKVAERFTEEIK----KAGLDKEVLVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + P+ + EI++ G+
Sbjct: 62 EGVFYSRVKPDYVPEIVEEHLLKGRPVK 89
>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +K+ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSDSDKVAERFTEEIK----KAGLDKEVLVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + P+ + EI++ G+
Sbjct: 62 EGVFYSRVKPDYVPEIVEEHLLKGRPVK 89
>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +K+ E +I D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSDSDKVAERFTEEIK----KAGLDKEVLVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + P+ + EI++ G+
Sbjct: 62 EGVFYSRVKPDYVPEIVEEHLLKGRPVK 89
>gi|91788628|ref|YP_549580.1| hypothetical protein Bpro_2766 [Polaromonas sp. JS666]
gi|91697853|gb|ABE44682.1| conserved hypothetical protein [Polaromonas sp. JS666]
Length = 117
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 95 HVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPMVM 151
H+ +C C G ++L + +K LH DG + + V C AC P++
Sbjct: 16 HLLICTGPRCTQDGASQELFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPVMC 72
Query: 152 IGKD--TYEDLTPERLEEIIDA 171
+ D Y ++TP ++ IID
Sbjct: 73 VQPDGTWYYNVTPANMDRIIDQ 94
>gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Desulfobulbus propionicus DSM 2032]
gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
subunit [Desulfobulbus propionicus DSM 2032]
Length = 538
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ + S G H VC C E + R +S
Sbjct: 4 EELIRRADAHRRSLNGFTHHFLVCAGLGC------PRNEEIIAALRSVIAERGLQEQISV 57
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGD 178
+V C G C P+V++ + Y+ +TPE E+++ + G+
Sbjct: 58 RKVGCMGLCALGPIVLVQPEEIFYQAVTPEDAEDLVASL--GKAP 100
>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 596
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VCG T C+ ++L E + + ++ L LS C G C P+V +
Sbjct: 6 HILVCGGTGCISSQSDRLAEALKEALAKRGLAEEVKVVLS----GCFGFCEQGPIVKVAP 61
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDT 179
D Y +TPE +EI+ + G+ T
Sbjct: 62 DNTFYVKVTPEDADEIVAEHILKGRKVT 89
>gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO]
gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO]
Length = 653
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P + V+VC T C ++G L+ + + + + + C C +P
Sbjct: 569 PKEEKTVVRVCLGTSCYMKGSYNLLSQLIDYVRTE----DLSDEVEITGTFCLEHCGKSP 624
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
VM+ + T E+++E+++ ++
Sbjct: 625 NVMVNDKLISEATFEKIKEVLEKYAK 650
>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
Length = 597
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VC T C+ G E ++E +I +K L + + C G C P V+I
Sbjct: 5 RAHVLVCKGTGCVASGSEPIMEAFEKEIEKKGL----SKEVKVVQTGCLGLCELGPNVLI 60
Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
+ Y + E + EI++ +G + +R + SL+D + KR K
Sbjct: 61 YPEGSYYCTVKAEDVPEIVEEHL-LKGRIVERLLYKERDTKE---RYRSLMDIDFYKRQK 116
Query: 211 KKK 213
+
Sbjct: 117 RIA 119
>gi|304404619|ref|ZP_07386280.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9]
gi|304346426|gb|EFM12259.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9]
Length = 120
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
TR HV +C CM + +++ R +I +D + +C G C +A +V
Sbjct: 8 ATRHHVLICNGGSCMRQLGDEVTLAIREEIKLH----KADNYIHTTRTKCNGRCEDACVV 63
Query: 151 MIGKD--TYEDLTPERLEEII-DAFSTGQG 177
+ + Y+ +TPE + ++ + G+
Sbjct: 64 TVYPEGIWYQGMTPESGKRLVREHLLRGEP 93
>gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
Length = 572
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ + VC +TPC+ G ++ + +D + C G C
Sbjct: 16 KRQQCQLRILVCCSTPCLSSGA----AAIKSALESAVAEHQADMAIEAVATGCMGPCSRG 71
Query: 148 PMVMIG-----KDTYEDLTPERLEEIIDAF-STGQGDT 179
P++ + YE +T E E++ + TG T
Sbjct: 72 PVLTVQQPGAADTVYEHVTGEFAVELVQHYARTGTLPT 109
>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
NADH-quinone oxidoreductase chain F related [uncultured
archaeon]
Length = 658
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +C T C G + + + ++ +K + G C G C P+++I G
Sbjct: 28 ITICSGTACHATGSDAVAAAIQAEL-EKQGLTDDVG---VRRTGCHGFCERGPIIVIYPG 83
Query: 154 KDTYEDLTPERLEEIIDAFSTGQ 176
+ +Y ++TPE + EII G
Sbjct: 84 ELSYLNVTPEDVPEIIAKTIKGN 106
>gi|332968954|gb|EGK08000.1| 2Fe-2S ferredoxin [Desmospora sp. 8437]
Length = 137
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ G + H +C C G E++ + R +I H + + + C G C +
Sbjct: 1 MELTGMKVHFLLCNGASCTRNGAEEVTKAIRQEIQ----HLDLGKEVHTTKTLCNGRCKH 56
Query: 147 AP-MVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
P +V + Y+ + R +E++ ++ P I R S
Sbjct: 57 GPIVVQYPAGEWYQQMDAGRGKELVRKLMQPGMESPVP-SYIFRTGS 102
>gi|312797427|ref|YP_004030349.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
gi|312169202|emb|CBW76205.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
Length = 111
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 93 RAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ HV C C G + + E + +I K L +G + + C C
Sbjct: 6 QHHVFFCLNQRDPGERPSCANCGAQAMQEYAKRRI--KALGLAGEGKVRINKAGCLDRCE 63
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ D Y + ++EIID+
Sbjct: 64 LGPVLVVYPDATWYTYVDEADIDEIIDS 91
>gi|163782063|ref|ZP_02177062.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
gi|159882595|gb|EDP76100.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
Length = 110
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G ++ + K+ + P S + C G C+ P +++ + Y ++
Sbjct: 21 SCAEKGSREVYQAFMEKLQEDPELFMST---AVTPTGCLGPCMMGPTMVVYPEGIWYGNV 77
Query: 161 TPERLEEII-DAFSTGQG 177
E +EEII + G+
Sbjct: 78 KVEDVEEIIREHLKGGKP 95
>gi|148270502|ref|YP_001244962.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermotoga petrophila RKU-1]
gi|147736046|gb|ABQ47386.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermotoga petrophila RKU-1]
Length = 69
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
+ C L+G +++ + C G C V I +
Sbjct: 1 MGSSCHLKGSYEVVRRFQ--------ELQKKYNFKLYGSLCFGNCSQGVCVEIDGQLFSR 52
Query: 160 LTPERLEEIIDA-FSTG 175
+TPE EEI+ G
Sbjct: 53 VTPENAEEILKRVLQNG 69
>gi|53802527|ref|YP_112790.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath]
gi|53756288|gb|AAU90579.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath]
Length = 108
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 89 PVGTRAHVQVCGTTP-------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
P ++ T P C G + + + L+ G + C
Sbjct: 2 PKPSKHVFVCAQTRPPGHPRGSCGQLGSTAVFQTFMQQFEAGQLY----GQFALTSTGCL 57
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
G C P V++ + Y ++P + EII+ G+
Sbjct: 58 GTCDLGPTVLVYPEGVMYSKVSPADVSEIIEEHLKNGRP 96
>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
Length = 626
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
R HV VCG T C G +K+IE K+H++ + + + + C G C
Sbjct: 28 TEDNPYRKHVLVCGGTGCTSSGSKKIIE----KLHEEIRKNSLENEIGVVKTGCFGLCAL 83
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
P++++ + Y + E + EI+ + G+
Sbjct: 84 GPIMIVYPEGAFYSMVKEEDIPEIVSEHLLNGR 116
>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
Length = 595
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G ++++ K+ + + D +S + C G C P+++I
Sbjct: 5 HVLVCGGTGCTSSGSQQIM----VKLRDELKGQGLDQEVSVVQTGCHGLCALGPIMIIYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQG 177
D Y + E + EI+ + G+
Sbjct: 61 DATFYAMVKEEDISEIVSEHLLKGRP 86
>gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
Length = 543
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
V C +T C ++++ + I K L + V C G C
Sbjct: 14 RERQKSVRVHCCTSTGCRAANSLEVLQQLQEGITAKGLGDR----VEAVGVGCMGFCGRG 69
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
P+V + YE++ P+ II A G+
Sbjct: 70 PLVQVEPAGILYEEVKPDEAPSIITALEGGKAKA 103
>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
Length = 610
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
T + +C C+ G + + + ++ + L D + E C GAC
Sbjct: 2 NEVPLTTNTILICAGGACISAGEKSVKDAFEEELKKYGL----DEVVRVIETGCMGACTL 57
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
P+ +I + Y+ LTP+ +EI++
Sbjct: 58 GPIAVIYPEGVFYQKLTPDAAKEIVEE 84
>gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
Ellin6076]
gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
Ellin6076]
Length = 548
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ + + + HV VC C+ G E++ + + ++
Sbjct: 1 MTIEELRKIGEAEREAQNKVQHHVCVCIAAGCLSSGAEQVRDALKKEVA----ESGMQNE 56
Query: 133 LSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTG-QGDTIRPGP 184
+ + V C G C P+V + D + ++TP EII + TG + ++ P
Sbjct: 57 VLVKGVGCMGLCSAGPLVGVTTDGQMFAEVTPAAAPEIIRSLDTGSEPGGVKRCP 111
>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
Length = 635
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + E + I + + D V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITENLQKAIERNGITDKVD----VITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII
Sbjct: 102 NTFYTQVTPEDAEEIISE 119
>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
enrichment culture clone BF]
Length = 597
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VCG T C+ G +K+ E +++ ++ N D + E C G C P++++
Sbjct: 5 RAHVLVCGGTGCVSSGSKKIQEALSDELAKQ----NLDKEIKVVETGCHGFCEMGPILIV 60
Query: 153 GKD--TYEDLTPERLEEII-DAFSTGQ 176
+ Y +T E ++EI+ + G+
Sbjct: 61 YPEGTFYCRVTVEDVQEIVAEHLVKGR 87
>gi|307267725|ref|ZP_07549170.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306917256|gb|EFN47585.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 84
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC + C L+G ++I+ I L + + + C G C V +G
Sbjct: 4 ITVCVGSSCHLKGAYEVIKEFERLIPFYGLENSVELKAGF----CLGRCTEGVTVKVGDR 59
Query: 156 TYEDLTPERLEEIIDAFSTGQ 176
+ + P+ + +++A G
Sbjct: 60 YFTSVAPKDVAGLLEAVKNGN 80
>gi|332527507|ref|ZP_08403559.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2]
gi|332111914|gb|EGJ11892.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2]
Length = 108
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
R H+ C C G ++ + C+ + K G + + C C
Sbjct: 5 RHHIFFCLNERPAGESSCARHGAQEAFDHCKAR--VKAEGLAGAGGVRVNKAGCLDRCAG 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P+ ++ + Y + E ++EI+++ G+
Sbjct: 63 GPVAVVYPEGTWYTYVDREDIDEIVESHLKNGRP 96
>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
Length = 635
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
T + +CG T C + + E + I + + D V C G C P+V
Sbjct: 41 TTHLQILICGGTGCKASSSQGITENLQKAIERNGITDKVD----VITVGCFGFCEKGPIV 96
Query: 151 MI--GKDTYEDLTPERLEEIIDA 171
I Y +TPE EEII
Sbjct: 97 KIIPDNTFYTQVTPEDAEEIISE 119
>gi|289810294|ref|ZP_06540923.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 73
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
+ AI +A++L + V +ATFY+Q PVG R ++ C + C + G + +
Sbjct: 1 MPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAA 59
Query: 116 CRNKIHQKPL 125
+
Sbjct: 60 LEKNTQHQTG 69
>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
Length = 599
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ +C C+ G + + + ++ + D + E C GAC P++++
Sbjct: 5 ENTILICAGGACISAGEKSVKDALQDLLK----EYALDSVVKIIETGCMGACDLGPIIIV 60
Query: 153 GKD--TYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQ 185
+ Y+ LTPE + +++ G+ ++ PQ
Sbjct: 61 YPEGIFYQKLTPENVRRVVEEHLLKGRIVEDMLYKGEFGEVKAKPQ 106
>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
[uncultured archaeon GZfos26D6]
Length = 654
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +C T C G + + + ++ +K + G C G C P+++I G
Sbjct: 28 ITICSGTACHATGSDAVAAAIQAEL-EKQGLTDDVG---VRRTGCHGFCERGPIIVIYPG 83
Query: 154 KDTYEDLTPERLEEIIDA-FSTGQ 176
+ Y ++TPE + EII +
Sbjct: 84 ELCYLNVTPEDVPEIIAKTIKENE 107
>gi|294646918|ref|ZP_06724539.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
gi|292637863|gb|EFF56260.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
Length = 159
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEII-DAFSTGQGDT------IRPGPQIDRISS 191
Y +TPE EEII + G+ + G R+ +
Sbjct: 102 NTFYTQVTPEDAEEIINEHIIGGRRIERLLYVDPKNGTYRQRLQA 146
>gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
Length = 535
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ Q R ++ C C+ G + ++ + I N +
Sbjct: 1 MNLKELLKIQKTTQEKLRKPRKQLRCCTAAGCLSSGSQAVLNRLKTAIK----EGNLENQ 56
Query: 133 LSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAF 172
+ V C C P+V I D Y+ +TPE+ IID
Sbjct: 57 VEISSVGCLRLCSQGPLVEIDPDKTLYQQVTPEQALAIIDTL 98
>gi|52080317|ref|YP_079108.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
gi|52785692|ref|YP_091521.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
licheniformis ATCC 14580]
gi|52003528|gb|AAU23470.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
gi|52348194|gb|AAU40828.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
licheniformis ATCC 14580]
Length = 128
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APM 149
+ H+ +C + C G E+L +V R +I + L D + C G C +
Sbjct: 8 NMKHHIFICNGSSCNRAGAEELTQVIRQEISDREL----DDFIHTTRTRCNGRCQDKCVA 63
Query: 150 VMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ Y DL PE + +ID+ T + +
Sbjct: 64 IHYPRGTWYRDLKPEDVPLLIDSLCTNEDYKEKA 97
>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
Length = 630
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G R V VCG T C +++ + ++ K + + C G C
Sbjct: 32 KETGYRKQVLVCGGTGCQSSHSMDVLKALKEELAAKGIA----DEVLVVRTGCFGLCSLG 87
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+V++ + Y TPE ++ I+D G+
Sbjct: 88 PIVIVYPEGAFYAQATPEGIKRIVDEHLVNGE 119
>gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142]
gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142]
Length = 545
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 7/123 (5%)
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
+ + + E+ + + ++ C + C+ G E + +
Sbjct: 3 TAWRTIIIMNLEELLAIQKETKQKRQQKPKQIRCCIASGCLSCGA----ESVKKSLDNAI 58
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ + + V C G C P + I + Y ++T E + II + + + P
Sbjct: 59 KEAHLEQEVEVLGVGCMGICGRGPSIEIDPETTLYHNVTLENIPAIITSLNQTKTSENLP 118
Query: 183 GPQ 185
PQ
Sbjct: 119 -PQ 120
>gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
Length = 535
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ Q R ++ C C+ G + ++ + I N +
Sbjct: 1 MNLKELLKIQKTTQEKLRKPRKQLRCCTAAGCLSSGSQAVLNRLKTAIK----EGNLENE 56
Query: 133 LSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ V C C P+V I D Y+ +TPE+ IID + + P
Sbjct: 57 VEISSVGCLRLCSQGPLVEIDPDKTLYQQVTPEQALAIIDTLNGVEPSQELP 108
>gi|313202237|ref|YP_004040895.1| ferredoxin 2fe-2S protein [Methylovorus sp. MP688]
gi|312441553|gb|ADQ85659.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. MP688]
Length = 105
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
G+ C G E + +++I K L + G + C C P+++I +
Sbjct: 18 DGSDCCANHGAEAAFDYMKSRI--KKLKLSGKGNVRINRAGCLDRCSEGPLMVIYPEAVW 75
Query: 157 YEDLTPERLEEIIDA-FSTGQG 177
Y + E ++EII++ G+
Sbjct: 76 YGFVDNEDIDEIIESHLINGKP 97
>gi|288817810|ref|YP_003432157.1| ferredoxin [Hydrogenobacter thermophilus TK-6]
gi|288787209|dbj|BAI68956.1| ferredoxin [Hydrogenobacter thermophilus TK-6]
gi|308751408|gb|ADO44891.1| Sucraseferredoxin family protein [Hydrogenobacter thermophilus
TK-6]
Length = 110
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G + + K+ P S + C G C P +++ D Y ++
Sbjct: 21 SCAEKGSRDIYQKFMEKLQMDPELFMS---VVITPTGCLGPCGMGPTMVVYPDGVWYGNV 77
Query: 161 TPERLEEIIDA-FSTGQG 177
PE +EEI++ Q
Sbjct: 78 RPEDVEEIVNNHLKNDQP 95
>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
Length = 625
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN------ 128
V E+ Y + G + VCG T C+ G + E + +H+K L+ +
Sbjct: 5 VDELQGKYDELSKMVQGYHMRILVCGGTGCIANGSLDVYEKFKEILHKKGLYTDLKLIQE 64
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
+ C G C P+V I + Y + E +EEI+++
Sbjct: 65 GKEGVGISSSGCHGFCEMGPLVRIEPEGYLYVKVKAEDVEEIVES 109
>gi|239618160|ref|YP_002941482.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1]
gi|239506991|gb|ACR80478.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1]
Length = 77
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA---PMVM 151
V+VC T C L G +++ V + P + V C G C P++
Sbjct: 2 KVKVCVGTMCHLMGASEILTVIQEIADNDPN-------IELVAVTCPGYCHVGKKPPIIE 54
Query: 152 IGKDTYEDLTPERLEEIIDA 171
I YE++T E + I+
Sbjct: 55 INGQVYENVTVESVYHILKE 74
>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Thermosediminibacter oceani DSM 16646]
gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Thermosediminibacter oceani DSM 16646]
Length = 597
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VC T C G E +++ +I + L G + C G C P ++I
Sbjct: 5 RAHVLVCRGTGCTASGSESVMDAFEKEIEKHGL----SGEVKVLLTGCLGLCELGPNIII 60
Query: 153 GKD--TYEDLTPERLEEIIDA 171
+ Y + E + EI++
Sbjct: 61 YPEGTYYCRVKAEDVPEIVEE 81
>gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
Length = 535
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ TR + C C G ++ + D V C G C
Sbjct: 12 REQNHYTRQRILCCAAAGCQASGSLEIKRRLETVLTATGKLAEVD----VIPVGCMGLCG 67
Query: 146 NAPMVMIGK--DTYEDLTPERLEEIIDAFSTGQGDTIR 181
+ P++ I + +E +TP E+++ A G R
Sbjct: 68 HGPLLRIEPSGEMFEHVTPADAEDLVAALDGGPCTVPR 105
>gi|150020388|ref|YP_001305742.1| hydrogenase large subunit [Thermosipho melanesiensis BI429]
gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
BI429]
Length = 653
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ V+VC T C +G +L+ +++ L + C C NAP
Sbjct: 571 DEDKKTVVKVCLGTSCYAKGSYELLSQLIKLTNEEELSNVE-----IKGTFCLEKCGNAP 625
Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171
VM+ ++ + E+++E++
Sbjct: 626 NVMVNDKIIDEASIEKIKEVLKE 648
>gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110]
gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110]
Length = 535
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ + Q R V+ C C+ G + K+ N
Sbjct: 1 MELEELLEIKKKTQGKHQQKRKRVRCCTAAGCLSSGS----KAIVEKLSTAVKSANLTEE 56
Query: 133 LSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ V C C P++ I D Y+ + PE+ E IID+ + + P
Sbjct: 57 IEITPVGCLRLCGQGPLIYIDPDDTLYQQIKPEQAEAIIDSLNGQEQPENLP 108
>gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
Length = 532
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ T + T ++ C C G + ++ + +
Sbjct: 1 MDISELLTIAEHERTMRRPT--CIRCCTALGCQSAGSL----SLKQRLEEAVAEVDRT-D 53
Query: 133 LSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
+ V C G C + P+V + D YE + I+ A G R PQ
Sbjct: 54 IEVIGVGCMGMCGHGPLVRVDPDGVLYEHVHAADAPSIVAALDGGDATAPRGDPQ 108
>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 594
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VCG T C G +++ ++++ ++ N D + + C G C P+V++
Sbjct: 3 RAHVLVCGGTGCTSSGSHGVMDGLKSELKKQ----NLDDEVLVVQTGCHGMCEMGPIVVV 58
Query: 153 GKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y ++ + + E+++ G+
Sbjct: 59 YPEGTFYCRVSKDDVPELVEEHLLKGR 85
>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
Length = 596
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G K++E N+I ++ L ++ E C G C P++++
Sbjct: 5 HVLVCGGTGCTSSGSPKIMEALHNEIKKQGLEE----EVAVVETGCHGLCALGPIMIVYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
D Y + P + EI+ + G+ T + + + +P GG+ +L D + K+
Sbjct: 61 DATFYSMVQPNDIPEIVSEHLLKGRVVT----RLLYQETVSPTGGIKALRDTDFYKK 113
>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
Length = 596
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C +++ + +I K L D + C G C P+V++
Sbjct: 6 HVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVVYP 61
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + E + EI++ G+
Sbjct: 62 EGVFYSCVKEEYVPEIVEEHLLKGR 86
>gi|225620389|ref|YP_002721646.1| NADH:ubiquinone oxidoreductase (Nuo) subunit E family protein
[Brachyspira hyodysenteriae WA1]
gi|225215208|gb|ACN83942.1| TRX Fd NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family,
DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
[Brachyspira hyodysenteriae WA1]
Length = 89
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ ++VC C ++G L+E R+ + +SDG L E EC C NA V+I
Sbjct: 6 KTVIEVCVGLHCSMKGAYSLLESIRSHYDLEIGVPSSDGMLLKEM-ECMHNCHNAVPVLI 64
Query: 153 GKDTYEDLTPERLEEIIDAFST 174
+ T + II
Sbjct: 65 NG---MECTKSSFKSIIKYIEA 83
>gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
Length = 467
Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 68 LDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
+ ++ V E A+FY F+L A ++ C C +R
Sbjct: 1 MRLSPAEVQETASFYAHFRLLDDHEAAPAAVLRRCTGPACSMR--------------PLD 46
Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
L DG + E+V C G C +AP+ + GK ++ +
Sbjct: 47 LGALPDGVM-VEDVPCTGLCDHAPVALAGKVPVRRADAAKVARALAE 92
>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
Length = 635
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + G + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIEKNGIT----GKVEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|325001506|ref|ZP_08122618.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1]
Length = 118
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 48 RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
+ EGW+S A+ VA L + V +ATFY F + P R V VC C
Sbjct: 61 AVHDAEGWLSEGALNHVARTLQVPPAEVYGVATFYAMFSVEPRAPR-VVHVCDDVACG 117
>gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
moutnovskia 768-28]
gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
moutnovskia 768-28]
Length = 516
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 19/112 (16%)
Query: 52 QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK 111
+ S + +A ++ V + VQVC PC+L+G +
Sbjct: 16 ERRITSDDELRKIAEKHNLPLSTV-------KMLSTFYFHDYSEVQVCMGLPCILKGARE 68
Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPE 163
+ + + + C G C P V +G Y + +
Sbjct: 69 VTRELERR------------GIKYSVTYCLGYCDKGPAVRMGDRYYTFVNGD 108
>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
orenii H 168]
gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
orenii H 168]
Length = 594
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
+ + VCG T C+ E + I ++ L ++ +E C G C P+ +
Sbjct: 2 KKYTICVCGGTGCLSSESEDVKNEFITLIEKEGLTE----QVTVKETGCMGTCDLGPVAL 57
Query: 152 IGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
I D Y L PE + +II++ I+ G ++R
Sbjct: 58 IDPDNVFYCKLKPEDVSDIINS-------HIKQGSIVER 89
>gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Synechococcus sp. PCC 7335]
gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
[Synechococcus sp. PCC 7335]
Length = 534
Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L+ T ++ C C+ + + + + + V C G C
Sbjct: 10 LAQPKTPCRIRCCTVGGCLSANGL----AVKTALQTAVADHHLAEQVKVKGVGCLGLCSK 65
Query: 147 APMVMIGKD--TYEDLTPERLEEIID 170
P+V I D YE +TPE+ +++
Sbjct: 66 GPLVQIDPDGRLYEQVTPEQATQLVQ 91
>gi|225848008|ref|YP_002728171.1| ferredoxin 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644489|gb|ACN99539.1| ferredoxin, 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1]
Length = 108
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G +++ + + K L ++ C G C+ P V++ D Y ++
Sbjct: 20 SCGDKGSDQIFMKFQEALMTKGLF----NKMAVTATGCLGPCMFGPNVVVYPDAIWYGNV 75
Query: 161 TPERLEEIIDA 171
TP +EEII
Sbjct: 76 TPADVEEIIQK 86
>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
Length = 614
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD------TYE 158
G IHQ+ RN + + EV C G C P++M+ + Y
Sbjct: 31 GTCGIAAGTAAVLKAIHQEIAERNLENAIEVSEVGCMGLCHAEPVIMLADEATGEKLIYG 90
Query: 159 DLTPERLEEIIDA 171
D+TPE++ I+ A
Sbjct: 91 DVTPEQVPAILAA 103
>gi|254414361|ref|ZP_05028128.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC
7420]
gi|196179036|gb|EDX74033.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC
7420]
Length = 104
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
S T V VC C G ++ D + +CQG
Sbjct: 1 MATDSSNHTPKQVLVCQHRSCQAEGSADVLAAFE--------EVAKDTDFKIKGTDCQGQ 52
Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQI 186
C P V + + Y + P + I++ G+ + P+I
Sbjct: 53 CSCGPTVRVVPEETWYYRVQPSDVRRIVEQHLKEGKPVDEKLNPRI 98
>gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414]
gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414]
Length = 533
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ S ++ C C+ + + + + N + V C
Sbjct: 10 ARKESDSHKPVQIRCCIAAACLATNS----QAVKQSLEEAVTAENLAEQVEVYGVGCMRL 65
Query: 144 CVNAPMVMIGKD--------TYEDLTPERLEEIIDAFSTGQ 176
C P+V + K+ YE +TP+ II A + G+
Sbjct: 66 CCQGPLVQVEKNTEPESTSTLYEKVTPDDAPSIITALNGGE 106
>gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
proteobacterium NaphS2]
gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
proteobacterium NaphS2]
Length = 540
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
VC T C G E+++ + +I + + T+ ++ C G C P+V+I +
Sbjct: 8 LVCLGTGCQSGGAEEVLSSLKEEIE----RLSLEETVQVKQTGCHGFCQRGPLVVIEPEG 63
Query: 156 -TYEDLTPERLEEIIDAFSTGQGDT 179
Y +TP+ + EI + G+
Sbjct: 64 IFYSKVTPDDVSEIAKSLLPGETPV 88
>gi|119896654|ref|YP_931867.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
gi|119669067|emb|CAL92980.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
Length = 106
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C T C G + + + L G++ + C G C +
Sbjct: 5 KHHVFFCCNQRQGGETSCNDHGASAMQVYAKERTA--ELGLKGKGSVRINKAGCLGRCDD 62
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
P++++ D Y + + ++EII + + G+
Sbjct: 63 GPVLVVYPDNVWYTYVDKDDIDEIINEHLAHGR 95
>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
Length = 607
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T + +C C+ G + + + ++ + L D + E C GAC P+ +
Sbjct: 4 TTNTILICAGGACISAGEKSVKDAFEEELRKYGL----DEVVRVIETGCMGACTLGPIAV 59
Query: 152 IGKD--TYEDLTPERLEEIIDA 171
I + Y+ LTP+ EI++
Sbjct: 60 IYPESVFYQKLTPDAAREIVEE 81
>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
Length = 624
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-------QKPLHRN 128
E+ + + V VC T C+ G ++ E + +
Sbjct: 6 EELRKAREMYSRYLKAEKRRVLVCAGTGCVSGGSMEIFERLSELVSKRGMDCQVELKEEP 65
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIID 170
D T+ ++ C G C P+V I + Y + E EEI+D
Sbjct: 66 HDNTIGMKKSGCHGFCEMGPLVRIEPEGYLYTKVKLEDCEEIVD 109
>gi|254000281|ref|YP_003052344.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4]
gi|253986960|gb|ACT51817.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4]
Length = 110
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
G+ C G E + +++I K L + G + C C P+++I +
Sbjct: 23 DGSDCCANHGAEAAFDYMKSRI--KKLKLSGKGNVRINRAGCLDRCSEGPLMVIYPEAVW 80
Query: 157 YEDLTPERLEEIIDA-FSTGQG 177
Y + E ++EII++ G+
Sbjct: 81 YGFVDNEDIDEIIESHLINGKP 102
>gi|300861283|ref|ZP_07107370.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis TUSoD Ef11]
gi|295112907|emb|CBL31544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit. [Enterococcus
sp. 7L76]
gi|300850322|gb|EFK78072.1| putative NAD-dependent formate dehydrogenase, gamma subunit
[Enterococcus faecalis TUSoD Ef11]
gi|315145701|gb|EFT89717.1| hypothetical protein HMPREF9495_00660 [Enterococcus faecalis
TX2141]
gi|315160212|gb|EFU04229.1| hypothetical protein HMPREF9513_03189 [Enterococcus faecalis
TX0645]
Length = 47
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
+ + C GAC P++ I + LT E++ ++I
Sbjct: 2 YHSIPCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQND 42
>gi|209525188|ref|ZP_03273731.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima
CS-328]
gi|209494373|gb|EDZ94685.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima
CS-328]
Length = 190
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
A + VC + C RG + + V + + LH + E+ C C
Sbjct: 99 PSTKSQPKPAKILVCQKSDCRQRGGQAVCRVLEQALCDRGLH----DQVKIEKTGCLKKC 154
Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDA 171
P +VM K Y + P + E+I+
Sbjct: 155 KLGPNLVVMPDKAHYTRVKPSDISEVIEK 183
>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit beta; putative signal peptide
[Candidatus Cloacamonas acidaminovorans]
gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit beta; putative signal peptide
[Candidatus Cloacamonas acidaminovorans]
Length = 619
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C + C+ G K+ E N + K L ++ E C G C P+++I +
Sbjct: 8 LLICCGSGCVSAGALKVKEQFHNVLKTKGLT----NEINIIETGCMGPCDYGPVIVIYPE 63
Query: 156 --TYEDLTPERLEEII-DAFSTGQGDT 179
Y+ +TP+ +EEI+ + F G+
Sbjct: 64 GVFYKKVTPDDVEEIVNEHFLKGRPVK 90
>gi|219851218|ref|YP_002465650.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c]
gi|219545477|gb|ACL15927.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c]
Length = 102
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 91 GTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
H+ +C ++ C + ++ +I + L + C G
Sbjct: 3 KPVHHIFICTSSRPTGQQKGFCHNKEGVDVMMRFMEEIEDRELG----NEVFITNTGCFG 58
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
C P+V++ D Y +TP+ + EI+D G
Sbjct: 59 ICEKGPIVVVYPDNIWYGSVTPDDVGEILDEHIEG 93
>gi|315505069|ref|YP_004083956.1| ferredoxin [Micromonospora sp. L5]
gi|315411688|gb|ADU09805.1| ferredoxin [Micromonospora sp. L5]
Length = 214
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
R H+ +C C RG ++ + ++ +D + + C C + P+
Sbjct: 112 PPYRHHLLLCRGPRCSARGADETYRAIVGALVEQQ---LTDADVLMAQTGCLFPCNHGPV 168
Query: 150 VMIGKD--TYEDLTPERLEEII-DAFSTGQG 177
++ D Y + P ++ + G+
Sbjct: 169 AVVHPDGTWYGPVRPGDAARLVGEHLRAGRP 199
>gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120]
gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120]
Length = 544
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
Q ++ C C+ + + ++ Q +G + V C C
Sbjct: 11 RQERSQQKPVQIRCCTAAGCLSANS----QAVQQQLEQAVKAEGLEGEVQVSGVGCMRLC 66
Query: 145 VNAPMVMIG--------KDTYEDLTPERLEEIIDAFSTGQ 176
P+V + + YE +TPE II A +
Sbjct: 67 CQGPLVEVEGSGEEKTKQRLYEKVTPEDASAIIGALKGKE 106
>gi|158320104|ref|YP_001512611.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs]
gi|158140303|gb|ABW18615.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs]
Length = 83
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
C + C + + E + + L + +E C G C P+V I
Sbjct: 8 VCSHCKSQSCNINKGVDIFEELKMY---EELFLEKNIVFDVKECGCLGKCK-GPVVKING 63
Query: 155 DTYEDLTPERLEEIIDAF 172
Y + +++EEI++
Sbjct: 64 KIYTKVDADKVEEILNEL 81
>gi|300313591|ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
gi|300076376|gb|ADJ65775.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
Length = 106
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 93 RAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
HV C T C +G + E + +I K L ++ G + + C C
Sbjct: 8 EHHVFFCLNQRQPGERTCCADKGAQAAQEHAKKRI--KQLGLSAPGKVRINKAGCLERCE 65
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+V+I Y + E ++EIID+
Sbjct: 66 EGPVVVIYPQGTWYTYVDKEDIDEIIDS 93
>gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
[Raphidiopsis brookii D9]
gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
[Raphidiopsis brookii D9]
Length = 533
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ + ++ C C+ G + + + +
Sbjct: 1 MELHELLEIARAENSQTKPIQ--IRCCTAAGCLSSGS----QAVKENLLTSIKAAGLEQQ 54
Query: 133 LSWEEVECQGACVNAPMVMIGKD------TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ V C C P+V I ++ Y+ +TP+ ++ID+ G+ ++
Sbjct: 55 VEVVGVGCMRLCCQGPLVEIDENKSDKITLYQQVTPQDAPKVIDSIK-GKNTNLKR 109
>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Ruminococcus sp. 18P13]
Length = 597
Score = 44.3 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV +CG T C G K+ + + +I++ L + + C G C N P++++
Sbjct: 5 HVLICGGTGCTSSGSLKIYDKLQEEINKNGL----SKEVQVVKTGCFGLCANGPIMIVYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
+ Y + E + EI+ + G+
Sbjct: 61 EGTFYSMVNVEDIPEIVSEHLLKGR 85
>gi|74316297|ref|YP_314037.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC
25259]
gi|74055792|gb|AAZ96232.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC
25259]
Length = 105
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 87 LSPVGTRAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
++ + HV C C G + + + + KI K + N +G C
Sbjct: 1 MTDPYFKHHVFFCTNQRDDGAKCCGAAGGQHMRDYLKKKI--KQANLNGEGKCRINTAGC 58
Query: 141 QGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
C P++++ + Y + ++EI +A G+
Sbjct: 59 MDRCDEGPVLVVYPEGVWYTYVDESDIDEIFEAHLKEGR 97
>gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
[Cylindrospermopsis raciborskii CS-505]
gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
[Cylindrospermopsis raciborskii CS-505]
Length = 533
Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + E+ + ++ C C+ G + + E + L +
Sbjct: 1 MELHELLEIARAENSQKKPIQ--IRCCTAAGCLSSGSQAVKENLLTSLKAAGLEQ----Q 54
Query: 133 LSWEEVECQGACVNAPMVMIGKD------TYEDLTPERLEEIIDAFSTGQGDTIR 181
+ V C C + P+V I ++ Y+ +TP+ ++ID+ G+ T++
Sbjct: 55 VEVVGVGCMRLCCHGPLVEIDENKSHKIKLYQQVTPQDAPKVIDSIK-GKNTTLK 108
>gi|16329813|ref|NP_440541.1| hypothetical protein sll1584 [Synechocystis sp. PCC 6803]
gi|1652298|dbj|BAA17221.1| sll1584 [Synechocystis sp. PCC 6803]
Length = 134
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACV 145
R C T C + + ++ + DG + + C C
Sbjct: 26 QRHLFLCCDQTKPKCCSKEDSLATWDYLKKRLPELGLDCTQSSRDGNIFRTKANCLRVCQ 85
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ + Y ++TP +E+I+
Sbjct: 86 QGPILLVYPEGIWYRNVTPTVMEKILQE 113
>gi|218260393|ref|ZP_03475732.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii
DSM 18315]
gi|218224547|gb|EEC97197.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii
DSM 18315]
Length = 81
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 25 WVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
+NE+++ + +I +L AQ G++ R E++A+ L + RV + TFY+
Sbjct: 12 KINELLAVCDEHNNDPGELINILHAAQGIFGYLPREVQEIIASRLHIPVSRVYGVVTFYS 71
Query: 84 QFQLSPVGTR 93
F ++P G
Sbjct: 72 FFTMTPKGKY 81
>gi|152982584|ref|YP_001354936.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille]
gi|151282661|gb|ABR91071.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille]
Length = 106
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYED 159
C RG + + + K L + G + + C G C P+++I Y
Sbjct: 24 ECCAERGAHAAQKHLKAR--VKELGLSRSGEVRVNQSGCLGRCEEGPVIVIYPQGTWYTY 81
Query: 160 LTPERLEEIID 170
+ E L+EIID
Sbjct: 82 VDNEDLDEIID 92
>gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
Length = 530
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 23/116 (19%)
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A TQ + R + VC + C+ G +KL+ R+++ Q+P +
Sbjct: 6 ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLAQQPQISAR-----AD 60
Query: 137 EVECQGACVNAPMVMIGKDT------------------YEDLTPERLEEIIDAFST 174
V C G C P+VM+ Y L PE ++ + +
Sbjct: 61 GVGCMGLCSKGPLVMVQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLAD 116
>gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8]
gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8]
Length = 252
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G R V VCG T C +++ ++++ + + + C G C
Sbjct: 32 KETGYRKQVLVCGGTGCQSSHSMDVLKALKDELAAQGIA----DEVLVVRTGCFGLCSLG 87
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P+V++ + Y TPE ++ I+D
Sbjct: 88 PIVIVYPEGAFYSQATPEGIKRIVDE 113
>gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
Length = 601
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ + VC + C+ G ++++ + +P + L E V C G C P+V
Sbjct: 19 AAKHRIGVCTASGCLSCGSREVLKAIEQEAAARP-----EANLRIEGVGCMGLCSRGPLV 73
Query: 151 MIGK---------------DTYEDLTPERLEEIIDAFSTGQGDTIR 181
M+ +++LTP ++ + D
Sbjct: 74 MVQSGPVPAENSGAGAETAFLFKELTPADAPALVAYLEQQKSDPPT 119
>gi|76812106|ref|YP_332031.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b]
gi|167813980|ref|ZP_02445660.1| ferredoxin family protein [Burkholderia pseudomallei 91]
gi|167822502|ref|ZP_02453973.1| ferredoxin family protein [Burkholderia pseudomallei 9]
gi|167892587|ref|ZP_02479989.1| ferredoxin family protein [Burkholderia pseudomallei 7894]
gi|167909304|ref|ZP_02496395.1| ferredoxin family protein [Burkholderia pseudomallei 112]
gi|254187922|ref|ZP_04894434.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237]
gi|76581559|gb|ABA51034.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b]
gi|157935602|gb|EDO91272.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237]
Length = 105
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 6 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+V++ + Y + ++EI+++ GQ
Sbjct: 64 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98
>gi|82702107|ref|YP_411673.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC
25196]
gi|82410172|gb|ABB74281.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC
25196]
Length = 103
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYE 158
T C G + + + + ++ + + + + C C P++++ + Y
Sbjct: 19 TLCCNNFGAQAMRDYAKERV-KALKLDSKNKRIRINNAGCLDRCNEGPVIVVYPEDVWYT 77
Query: 159 DLTPERLEEIIDA-FSTGQ 176
+ E ++EII+ G+
Sbjct: 78 YVDKEDIDEIIEEHLKNGR 96
>gi|167736876|ref|ZP_02409650.1| ferredoxin family protein [Burkholderia pseudomallei 14]
Length = 109
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 10 RHHVFFCLNRREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+V++ + Y + ++EI+++ GQ
Sbjct: 68 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102
>gi|317127563|ref|YP_004093845.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
2522]
gi|315472511|gb|ADU29114.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
2522]
Length = 133
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
T H+ +C CM G E+L++ RN+I + +H + C G
Sbjct: 1 MATWDLRDTEHHLLICNGGSCMKAGAEELVQAVRNEIGKMDVH----KRVHTSRTLCNGR 56
Query: 144 CVN-APMVMIGKDT-YEDLTPERLEEIIDAFSTGQGDTIR 181
C + ++ Y+ +T +I++ TG+ T +
Sbjct: 57 CHDKCVLISYPDGYWYKGMTSADASNLIESLLTGKVMTEK 96
>gi|269792194|ref|YP_003317098.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269099829|gb|ACZ18816.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 104
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
N +++ C GAC P+V Y +TPE+L I+
Sbjct: 56 EMNLTHSVTVRRSSCLGACSQPPVVEFRGKVYASMTPEKLRSILRE 101
>gi|53718046|ref|YP_107032.1| putative ferredoxin [Burkholderia pseudomallei K96243]
gi|126440126|ref|YP_001057489.1| ferredoxin, putative [Burkholderia pseudomallei 668]
gi|126454789|ref|YP_001064738.1| ferredoxin family protein [Burkholderia pseudomallei 1106a]
gi|134279496|ref|ZP_01766208.1| ferredoxin family protein [Burkholderia pseudomallei 305]
gi|167717857|ref|ZP_02401093.1| ferredoxin family protein [Burkholderia pseudomallei DM98]
gi|167844084|ref|ZP_02469592.1| ferredoxin family protein [Burkholderia pseudomallei B7210]
gi|167901084|ref|ZP_02488289.1| ferredoxin family protein [Burkholderia pseudomallei NCTC 13177]
gi|167917337|ref|ZP_02504428.1| ferredoxin family protein [Burkholderia pseudomallei BCC215]
gi|217419647|ref|ZP_03451153.1| ferredoxin family protein [Burkholderia pseudomallei 576]
gi|226193683|ref|ZP_03789286.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9]
gi|237810640|ref|YP_002895091.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346]
gi|242314153|ref|ZP_04813169.1| ferredoxin family protein [Burkholderia pseudomallei 1106b]
gi|254181993|ref|ZP_04888590.1| ferredoxin family protein [Burkholderia pseudomallei 1655]
gi|254196590|ref|ZP_04903014.1| ferredoxin family protein [Burkholderia pseudomallei S13]
gi|254261131|ref|ZP_04952185.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a]
gi|254295958|ref|ZP_04963415.1| ferredoxin family protein [Burkholderia pseudomallei 406e]
gi|52208460|emb|CAH34394.1| putative ferredoxin [Burkholderia pseudomallei K96243]
gi|126219619|gb|ABN83125.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 668]
gi|126228431|gb|ABN91971.1| ferredoxin family protein [Burkholderia pseudomallei 1106a]
gi|134248696|gb|EBA48778.1| ferredoxin family protein [Burkholderia pseudomallei 305]
gi|157806245|gb|EDO83415.1| ferredoxin family protein [Burkholderia pseudomallei 406e]
gi|169653333|gb|EDS86026.1| ferredoxin family protein [Burkholderia pseudomallei S13]
gi|184212531|gb|EDU09574.1| ferredoxin family protein [Burkholderia pseudomallei 1655]
gi|217396951|gb|EEC36967.1| ferredoxin family protein [Burkholderia pseudomallei 576]
gi|225934261|gb|EEH30245.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9]
gi|237505352|gb|ACQ97670.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346]
gi|242137392|gb|EES23794.1| ferredoxin family protein [Burkholderia pseudomallei 1106b]
gi|254219820|gb|EET09204.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a]
Length = 109
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 10 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+V++ + Y + ++EI+++ GQ
Sbjct: 68 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102
>gi|319645903|ref|ZP_08000133.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
gi|317391653|gb|EFV72450.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
Length = 128
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APM 149
+ H+ +C T C G E+L +V +I ++ L D + C G C +
Sbjct: 8 NMKHHIFICNGTSCNRAGAEELTQVILQEISEREL----DDVIHTTRTRCNGRCQDKCVA 63
Query: 150 VMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
+ Y DL PE + +ID+ T + +
Sbjct: 64 IHYPRGTWYRDLIPEDVPLLIDSLCTNEDYKEKA 97
>gi|220929709|ref|YP_002506618.1| hypothetical protein Ccel_2301 [Clostridium cellulolyticum H10]
gi|220000037|gb|ACL76638.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
Length = 86
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC + C L+G ++I + I + L ++ S+ C G C V IG
Sbjct: 4 IYVCVGSSCHLKGSYQIINCFQRMIKENNLESKAELKASF----CMGHCTTGVCVKIGDT 59
Query: 156 TYEDL---TPERL--EEIIDAFSTGQ 176
Y D+ E E++I+ +
Sbjct: 60 FYGDVGVINAESFFTEKVINTIEGNR 85
>gi|150391253|ref|YP_001321302.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF]
gi|149951115|gb|ABR49643.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF]
Length = 102
Score = 43.9 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 91 GTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC ++ C+ +G ++ +I + R DG + C G
Sbjct: 3 KPKHHIFVCSSSRINGEQKGFCLQKGAVDIVNSFMEEI----MERELDGDVMVTNTGCIG 58
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
C P+V++ + Y +T + +EEI+D+ G
Sbjct: 59 ICSKGPIVIVYPEGVWYGSVTADDVEEIMDSHIEG 93
>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
ASO3-1]
Length = 774
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + G + VC PC G +++ ++ ++ + + + CQG
Sbjct: 16 SLRRQEGNGAKVRASVCCGLPCTALGSQEIARELADESARQGIEVD------IVKTGCQG 69
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C P++ + Y+ + PER E+I
Sbjct: 70 LCQKGPLMQVEPHGYFYQKVKPERAGEMISK 100
>gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
Length = 538
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ C +T C + ++ Q + V C G C P+V I
Sbjct: 21 RIHCCTSTGCQAANSL----AVKKEMEQAVKKAGLQDKVQVVGVGCMGFCGKGPIVEIEP 76
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIRPG-PQ 185
+ YE + PE I++ + G+ PG PQ
Sbjct: 77 EGLQYETVKPEVAASIVEGLNGGEVKA-TPGDPQ 109
>gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
Length = 577
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|167561352|ref|ZP_02354268.1| ferredoxin family protein [Burkholderia oklahomensis EO147]
gi|167568583|ref|ZP_02361457.1| ferredoxin family protein [Burkholderia oklahomensis C6786]
Length = 109
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 84 QFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ + HV C C G +++ E + + K L G +
Sbjct: 1 MGHIMDPYYQHHVFFCLNQREKSADRPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRV 58
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ C C P+V++ + Y + ++EI+++ GQ
Sbjct: 59 NKAGCLDRCEEGPVVVVYPEGVWYTYVDTNDIDEIVESHLRDGQ 102
>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
WAL-14163]
gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
WAL-14163]
gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
Length = 595
Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G +++E + +I + L +S + C G C P+++I
Sbjct: 5 HVLVCGGTGCTSSGSLQIMETLKAEIDKNGLSE----EVSVVQTGCHGLCALGPIMIIYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
D Y + E + EI+ + G+
Sbjct: 61 DATFYAMVKNEDIPEIVSEHLLKGR 85
>gi|222100046|ref|YP_002534614.1| hypothetical protein CTN_1072 [Thermotoga neapolitana DSM 4359]
gi|221572436|gb|ACM23248.1| Hypothetical Protein CTN_1072 [Thermotoga neapolitana DSM 4359]
Length = 75
Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++VC + C L+G +++E K D C G C V I
Sbjct: 2 TIRVCMGSSCYLKGSYRVVE--------KLRELQKDYNFKLYGSLCFGRCSQGICVEIDG 53
Query: 155 DTYEDLTPERLEEIIDA 171
+ ++PE +EE++
Sbjct: 54 RLFTGVSPENVEELVKK 70
>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Desulfobulbus propionicus DSM 2032]
gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Desulfobulbus propionicus DSM 2032]
Length = 633
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--------LHRNSDGTLSWEEVECQ 141
+G + V +C T C+ G K+ + ++ +K ++ G ++ CQ
Sbjct: 15 MGAQRRVVICAGTGCVANGAMKVHAAFQQRMAEKNLPFVLELREENDNSGKTAFTRSGCQ 74
Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
G C P+V + Y + P ++EII+ G G ++R + S P G
Sbjct: 75 GFCQMGPLVTVLPENILYTQVKPADIDEIIETSLIG-------GGVVERLLYSEPGNG 125
>gi|239904992|ref|YP_002951731.1| hypothetical protein DMR_03540 [Desulfovibrio magneticus RS-1]
gi|239794856|dbj|BAH73845.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 80
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + +C + C RG K + + + L + + C+ C P + I
Sbjct: 2 KHEIVICMGSSCFARGNRKHLLMIEQYLADHGLSES----VVLTGSRCEDQCRCGPNIRI 57
Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175
Y D+ ERL E++ G
Sbjct: 58 DGQLYGDINGERLLELLSRHLAG 80
>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
Length = 595
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G +K+ E +I + L + + C G C P++++
Sbjct: 5 HVLVCGGTGCTSSGSQKIREKLEAEIKKNGLE----NEVGVVKTGCFGLCALGPIMIVYP 60
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ Y + E + EI++ G+ T
Sbjct: 61 EGSFYAMVKEEDIPEIVEEHLLKGRVVT 88
>gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit
[Brachyspira hyodysenteriae WA1]
gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit
[Brachyspira hyodysenteriae WA1]
Length = 562
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ H+ VCG T C ++++ + R + + + + C G C P
Sbjct: 30 STTHKYHILVCGGTACESNKSDEIVRLLREYAEKNGIA----DEVLVVKTGCFGFCSQGP 85
Query: 149 MV--MIGKDTYEDLTPERLEEIIDA 171
+V M G+ Y + PE ++II+
Sbjct: 86 VVKIMPGRVFYTHVGPEHAQDIIEK 110
>gi|108805721|ref|YP_645658.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941]
gi|108766964|gb|ABG05846.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941]
Length = 109
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ AHV +CG C RG +++ +V + ++ + + + V+C G C +
Sbjct: 1 MKVRPYDAHVLLCGGGDCKKRGSKEVRKVLKAEL----RAAGLNRDVRVDSVDCLGFCKH 56
Query: 147 APMVM------IGKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISS 191
P + G Y L ++ E++ A G+ R +
Sbjct: 57 GPNAVVYGPNGHGGTWYLGLDEGKVPEVVSAHLKEGRPAGHLAAEYRPRKGA 108
>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 634
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
H+ +CG C + +++ +I N + C G C P++ M
Sbjct: 39 HILICGGPGCKASNSDNILKAFNEEIT----RLNLQEDVKVIMTGCFGFCAKGPVIEIMP 94
Query: 153 GKDTYEDLTPERLEEIIDA 171
K Y +T E ++EII++
Sbjct: 95 DKVFYIKVTEEDVKEIIES 113
>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
10507]
gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
10507]
Length = 643
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VCG T C G ++IE + +I ++ L + +S C G C P++++ +
Sbjct: 54 VLVCGGTGCTSSGSRRVIERLKEEIKKQGLEED----VSVVMTGCFGLCALGPIMIVYPE 109
Query: 156 --TYEDLTPERLEEIIDA-FSTGQGDT 179
Y + E + EI++ G+ DT
Sbjct: 110 GAFYSMVKEEEIPEIVEQHLLHGKVDT 136
>gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
Length = 534
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
++ C T C G E + + + I + L V C G C P
Sbjct: 15 TCQKPIRLRCCTATGCRANGAEAVFKAVQQTIADQNLGDR----CEAVSVGCLGLCGAGP 70
Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171
+V Y D+ P++ +++ A
Sbjct: 71 LVQCDPSDRLYSDIRPDQAADLVAA 95
>gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301]
gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
Length = 534
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
++ C T C G E + + + I + L V C G C P
Sbjct: 15 TCQKPIRLRCCTATGCRANGAEAVFKAVQQTIADQNLGDR----CEAVSVGCLGLCGAGP 70
Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171
+V Y D+ P++ +++ A
Sbjct: 71 LVQCDPSDRLYSDIRPDQAADLVAA 95
>gi|220931030|ref|YP_002507938.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
gi|219992340|gb|ACL68943.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
Length = 666
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
VQVC T C L G L++ ++ ++ L D E C C NA
Sbjct: 583 ESSEEVVPVQVCVGTCCYLHGSYDLLQGLIERVEEEGLSDKVD----IEATFCFENCKNA 638
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFS 173
P V +G + E +++I+
Sbjct: 639 PSVKVGNQLLSKV--ESVDDILKHLK 662
>gi|153955637|ref|YP_001396402.1| hypothetical protein CKL_3023 [Clostridium kluyveri DSM 555]
gi|146348495|gb|EDK35031.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 74
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
EVI +YP R Q ++P+L Q + ++ R ++E ++ +D+ + R+ +
Sbjct: 16 QEVIEKYP--RKQRFILPILHDIQRKYKYIPRQSLENLSKYMDIPFNRLYSMV 66
>gi|188996507|ref|YP_001930758.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|237755692|ref|ZP_04584301.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5]
gi|188931574|gb|ACD66204.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|237692142|gb|EEP61141.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5]
Length = 108
Score = 43.5 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G +++ + + K L ++ C G C+ P V++ D Y ++
Sbjct: 20 SCGDKGSDQIFMKFQEALMTKGLF----NKMAVTATGCLGPCMFGPNVVVYPDAIWYGNV 75
Query: 161 TPERLEEIIDA 171
TP +EEI+
Sbjct: 76 TPADVEEIVQK 86
>gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
Length = 562
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 23/116 (19%)
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E+A TQ + R + VC + C+ G +KL+ R+++ Q+P +
Sbjct: 6 ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLEQQPQISAR-----AD 60
Query: 137 EVECQGACVNAPMVMIGKDT------------------YEDLTPERLEEIIDAFST 174
V C G C P+VM+ Y L PE ++ + +
Sbjct: 61 GVGCMGLCSKGPLVMVQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLAD 116
>gi|53724947|ref|YP_101910.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344]
gi|121599717|ref|YP_991578.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1]
gi|126449924|ref|YP_001082713.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247]
gi|254202023|ref|ZP_04908387.1| ferredoxin family protein [Burkholderia mallei FMH]
gi|52428370|gb|AAU48963.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344]
gi|121228527|gb|ABM51045.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1]
gi|126242794|gb|ABO05887.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247]
gi|147747917|gb|EDK54993.1| ferredoxin family protein [Burkholderia mallei FMH]
Length = 104
Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 6 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63
Query: 145 VNAPMVMI-GKDTYEDLTPERLEEIIDA-FSTGQ 176
P+V+ Y + ++EI+++ GQ
Sbjct: 64 EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 97
>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
Length = 613
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +CG T C+ G +++ + R ++ N + E C G C P+++I
Sbjct: 24 RILICGGTGCVSSGSKEIQDELRKELEVN----NLKSEVKIVETGCHGFCEKGPIIIIYP 79
Query: 155 D--TYEDLTPERLEEIID-AFSTGQ 176
+ Y ++ PE ++E+++ G+
Sbjct: 80 EEVFYCEVDPEDIKELVEKQLLEGE 104
>gi|297831032|ref|XP_002883398.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329238|gb|EFH59657.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 103
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVS 57
V E++S YP + Q AVIPLL AQ+Q GW+
Sbjct: 1 VKEILSYYPSNYKQFAVIPLLDLAQQQHGGWLP 33
>gi|124384163|ref|YP_001027349.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229]
gi|238561972|ref|ZP_00441172.2| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4]
gi|251767973|ref|ZP_02269015.2| ferredoxin family protein [Burkholderia mallei PRL-20]
gi|254177055|ref|ZP_04883712.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399]
gi|254207355|ref|ZP_04913706.1| ferredoxin family protein [Burkholderia mallei JHU]
gi|254357612|ref|ZP_04973886.1| ferredoxin family protein [Burkholderia mallei 2002721280]
gi|124292183|gb|ABN01452.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229]
gi|147752897|gb|EDK59963.1| ferredoxin family protein [Burkholderia mallei JHU]
gi|148026676|gb|EDK84761.1| ferredoxin family protein [Burkholderia mallei 2002721280]
gi|160698096|gb|EDP88066.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399]
gi|238523564|gb|EEP87002.1| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4]
gi|243061222|gb|EES43408.1| ferredoxin family protein [Burkholderia mallei PRL-20]
Length = 108
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 10 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67
Query: 145 VNAPMVMI-GKDTYEDLTPERLEEIIDA-FSTGQ 176
P+V+ Y + ++EI+++ GQ
Sbjct: 68 EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 101
>gi|24158931|pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
gi|24158932|pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG ++ + KI P T C A + P+V++ D Y +
Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLF---MTTVITPTGCMNASMMGPVVVVYPDGVWYGQV 77
Query: 161 TPERLEEIIDA-FSTGQG 177
PE ++EI++ G+
Sbjct: 78 KPEDVDEIVEKHLKGGEP 95
>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 588
Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V VCG T C+ G +++ +V ++ ++ + CQG C P++ + +
Sbjct: 2 RVLVCGGTGCVTSGSQEVKDVLETELEKENIQDYK-----VIFTGCQGFCEQGPLIRVEQ 56
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
D Y ++ E ++I+ GQ
Sbjct: 57 DETFYCNVDAEGAKKIVHHHLKNGQ 81
>gi|119717108|ref|YP_924073.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614]
gi|119537769|gb|ABL82386.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614]
Length = 226
Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM- 149
G R V VC C G + + H+ D + CQ C AP+
Sbjct: 130 GHRHQVMVCRGPRCTAMGQVDNLRAMVVAL---VEHQLGDNDVLLVHTGCQSPCNQAPVI 186
Query: 150 -VMIGKDTYEDLTPERLEEIIDA 171
V Y + P I+
Sbjct: 187 SVQPDDVWYGGVDPAMASLIVAE 209
>gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
BAA-613]
gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
BAA-613]
Length = 1033
Score = 43.2 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWE 136
+ + ++ R V VCG C+ C ++ + K + D +
Sbjct: 10 LLSIKEEYLRRQKSYRRQVLVCGGAGCISSNCGEVRDAL-----IKSVSTYKLDDEVKVM 64
Query: 137 EVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
C G C P++++ + Y + PE+ E+++
Sbjct: 65 VTGCMGTCAMGPVILVEPEGIFYTKMNPEKAEDVV 99
>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 639
Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 51 EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE 110
EQ + +VV + A + + A + R HV VCG T C G
Sbjct: 5 EQLHEICERMRKVVQLREENAKEILEKAAMCESGKDADGNTYRTHVLVCGGTGCTSSGSA 64
Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEI 168
++ E +I L + + C G C P++++ + Y + E + EI
Sbjct: 65 RIRERLEKEIEANGL----SDEVCVVKTGCFGLCALGPIMIVYPEGTFYSMVQEEDIPEI 120
Query: 169 I-DAFSTGQ 176
+ + G
Sbjct: 121 VTEHLLKGN 129
>gi|288573616|ref|ZP_06391973.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569357|gb|EFC90914.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 85
Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T + +C + C RG ++ ++ + + L + + C+G C+ P +
Sbjct: 2 TSHTIVICMGSSCFSRGNQENLQEIKTFLKDNDLE----DQVLLKGSRCEGECLKGPNIT 57
Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDT 179
+ + + E + I++ G
Sbjct: 58 VDGRLFNGVKRENILSILEETLLGGSKP 85
>gi|94309172|ref|YP_582382.1| ferredoxin-like protein [Cupriavidus metallidurans CH34]
gi|93353024|gb|ABF07113.1| putative ferredoxin (modular protein) [Cupriavidus metallidurans
CH34]
Length = 134
Score = 43.2 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
Q + C K ++ K ++ +G + + C C P++++ +
Sbjct: 43 QRDDGSACCADHNAKAMQEYAKKRCKELGIAGGEGRVRINKAGCLNRCELGPVLVVYPEA 102
Query: 156 -TYEDLTPERLEEIIDA-FSTGQG 177
Y + + ++EII++ G+
Sbjct: 103 VWYTFVDEQDIDEIIESHLINGKP 126
>gi|326383960|ref|ZP_08205644.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197419|gb|EGD54609.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395]
Length = 244
Score = 43.2 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC C G + + + D + C C AP+V +
Sbjct: 150 HVLVCRGPRCSANGAPETQAALTDAL---EAQALGDDDVLVTLTGCLFPCSQAPVVAVYP 206
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
D Y LT +R+ +++ G G I +S P
Sbjct: 207 DGVWYAGLTADRVATVVEQHLVG--GEPIRG-WIGERASRP 244
>gi|239618157|ref|YP_002941479.1| hypothetical protein Kole_1790 [Kosmotoga olearia TBF 19.5.1]
gi|239506988|gb|ACR80475.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
Length = 83
Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
++VC + C ++G + + + + +K L DG +S + C G C +V +
Sbjct: 3 IKVCMGSACHIKGSPNIAKKLQVLLKEKGL----DGKVSLKGSFCMGPCNKGVVVSVDGK 58
Query: 156 TYEDLTPERLEEII--DAFSTGQ 176
+ ++ + +EE + G+
Sbjct: 59 VFYHISEDNVEEFFFKEILKRGE 81
>gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
Length = 547
Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VC T C + +++I+ + +K + + C G C P++ I
Sbjct: 7 HMLVCAGTACESQESKEIIKNLEETLKEKGYE----KEVQIVKTGCFGFCEKGPIIKIHP 62
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y ++ PE + EI++
Sbjct: 63 DHVFYVEVKPEDVNEIVEE 81
>gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Clostridiales bacterium 1_7_47_FAA]
gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Clostridiales bacterium 1_7_47FAA]
Length = 1032
Score = 43.2 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R V VCG C+ C ++ + + + + G + C G C
Sbjct: 20 RKESYRRQVLVCGGAGCISSNCGEVRDA----LVKAVENFQLSGEVQVMVTGCMGTCAMG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P++++ + Y +TP+++E+++
Sbjct: 76 PVILVEPEGVFYTKMTPDKVEQVV 99
>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Aminomonas paucivorans DSM 12260]
gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Aminomonas paucivorans DSM 12260]
Length = 597
Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VCG T C+ + L + ++ + ++ L LS C G C P+V +
Sbjct: 7 HILVCGGTGCISSQSDVLAQALKDALKEQGLENEVKVVLS----GCFGFCEQGPIVKVAP 62
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y +TPE EI+
Sbjct: 63 DNTFYVKVTPEDAGEIVAE 81
>gi|310641711|ref|YP_003946469.1| NADH-ubiquinone oxidoreductase 51 kda subunit [Paenibacillus
polymyxa SC2]
gi|309246661|gb|ADO56228.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paenibacillus
polymyxa SC2]
Length = 87
Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK--DTYEDLTPERLEEIIDA 171
E +I + ++++ + C G C +A +V++ D Y +TP E++
Sbjct: 6 EEVTQEIRDEIRKQHAEAYIHTTRTRCNGRCHDAAVVIVYPQGDWYGQMTPASGTELVQK 65
Query: 172 FSTGQGDTI 180
G+
Sbjct: 66 LVAGEKLEP 74
>gi|294101230|ref|YP_003553088.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM
12261]
gi|293616210|gb|ADE56364.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM
12261]
Length = 97
Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
+ + + V C GAC +P+V + Y +T E+L ++ ++
Sbjct: 48 ELALEDNVHIKLVSCLGACTASPVVEFKGEIYGHMTKEKLFALLRSY 94
>gi|251770990|gb|EES51574.1| probable ferredoxin [Leptospirillum ferrodiazotrophum]
Length = 106
Score = 43.2 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
R H+ C C+ +G E + +L + C C + PMV++
Sbjct: 8 RHHILFCTGNKCLGKGG----EEMKILAQNIVDATPELSSLLVSKTGCVNMCESGPMVLL 63
Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ + D+T R + ++++ + + PG
Sbjct: 64 YPEGYWFSDMTEGRTKLLLESIRENR-EAPLPG 95
>gi|325679184|ref|ZP_08158775.1| hypothetical protein CUS_5481 [Ruminococcus albus 8]
gi|324109113|gb|EGC03338.1| hypothetical protein CUS_5481 [Ruminococcus albus 8]
Length = 83
Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIGK 154
+Q+C + C L+G E +IE+ + I L ++ C G C V +
Sbjct: 3 IQICVGSSCHLKGSEDMIELLKQAISTHDLE----NEVTLAGSFCAGRCNRVGVTVTVDD 58
Query: 155 DTYEDLTPERLEE 167
+ Y +TPE E
Sbjct: 59 EVYTGVTPEGFAE 71
>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
Length = 606
Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIG 153
+ +C T C G K+ E K + + C G C N P+V M
Sbjct: 5 ILICCGTGCRANGSMKVAEALSEAAEAKGG--RAQVIAEVKTTGCNGFCENGPIVKIMPD 62
Query: 154 KDTYEDLTPERLEEIIDA 171
Y + P+ EEII+
Sbjct: 63 NLVYYKVKPKDAEEIIEK 80
>gi|253997648|ref|YP_003049712.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8]
gi|253984327|gb|ACT49185.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8]
Length = 102
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 91 GTRAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C CM G E+ + +++ K L+ N G + C C
Sbjct: 3 HFQYHVFFCLNQREGGAACCMDHGAEQAFDHMKSR--VKKLNLNGAGKVRINRAGCLDRC 60
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ P++++ Y + + ++EI+D+ G+
Sbjct: 61 NDGPVMVVYPQAVWYTFVDNDDIDEIVDSHLVNGK 95
>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
Length = 635
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
Length = 635
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Bacteroides xylanisolvens XB1A]
Length = 635
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|187927293|ref|YP_001897780.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J]
gi|309780008|ref|ZP_07674761.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA]
gi|187724183|gb|ACD25348.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J]
gi|308921178|gb|EFP66822.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA]
Length = 109
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 91 GTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C G + + E + + K L N +G + + C C
Sbjct: 4 HYQHHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRC 61
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + E ++EII + G+
Sbjct: 62 ELGPVMVVYPEAVWYTFVDKEDIDEIIQSHLIEGKP 97
>gi|154150692|ref|YP_001404310.1| ferredoxin, 2Fe-2S [Candidatus Methanoregula boonei 6A8]
gi|153999244|gb|ABS55667.1| ferredoxin, 2Fe-2S [Methanoregula boonei 6A8]
Length = 102
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 91 GTRAHVQVCGTTPC--MLRGCEKLIE--VCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ H+ VC ++ +G E ++ ++ R+ G + C G C
Sbjct: 3 KPKHHIFVCTSSRANGQQKGFCHSKEGVAIMSRFMEEIEERDCGGEVFLSNTGCFGICDK 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
P+V++ D Y +TP+ + EI+D G
Sbjct: 63 GPVVVVYPDNVWYGAVTPDDVTEIMDTHIEG 93
>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
Length = 635
Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIQKNEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|121535571|ref|ZP_01667378.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
gi|121305811|gb|EAX46746.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
Length = 80
Score = 42.8 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ +C + C LRG ++ I + + N D E CQG C ++ I
Sbjct: 1 MVKLSICIGSACHLRGAHGVLSAFNALIDKYQVQSNVD----LEGSFCQGKCTEGVVIKI 56
Query: 153 GKDTYEDLTPERLEEI 168
+ ++T +++ +I
Sbjct: 57 DDEVITNVTKDKVYDI 72
>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
Length = 626
Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVE 139
+ ++ + VC T C +G K+ E + + ++ L + D ++
Sbjct: 18 KRKEKLSKLSIYVCVGTGCTAKGALKVYEEFQRVLLREGLLNSVKLAKIEDSENPLKKTG 77
Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA-FSTGQG 177
C G C N P ++ Y +T +E+I++ G+
Sbjct: 78 CCGRCSNGPLVNILPHGYFYSHVTVNDVEKIVEKTIKRGEP 118
>gi|163846740|ref|YP_001634784.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
gi|222524552|ref|YP_002569023.1| hypothetical protein Chy400_1276 [Chloroflexus sp. Y-400-fl]
gi|163668029|gb|ABY34395.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
gi|222448431|gb|ACM52697.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length = 82
Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
G L E++C AC + P VM+ D + +TP++L EI+++
Sbjct: 27 RTAYSGALCIVELDCMAACDDVPAVMLEYDYFPRVTPQQLIEIVES 72
>gi|269925972|ref|YP_003322595.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789632|gb|ACZ41773.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798]
Length = 113
Score = 42.8 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ V +C C R +LI V + + L G + C C P ++I
Sbjct: 2 KYSVAICAGADCSKRNTSQLITVLEQALRDEGLE----GDVLLRPAACSKLCELGPTLII 57
Query: 153 GKD--TYEDLTPERLEEII-DAFSTGQG 177
D Y +TPERL+ I+ + G
Sbjct: 58 YPDRVWYGGVTPERLQRIVREHLKYGNP 85
>gi|198461414|ref|XP_001362006.2| GA15645 [Drosophila pseudoobscura pseudoobscura]
gi|198137338|gb|EAL26586.2| GA15645 [Drosophila pseudoobscura pseudoobscura]
Length = 211
Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 9/165 (5%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
+ P +R S I L+ + Q ++ + +
Sbjct: 42 KVPANRRSSG-IHLISSLEHQRNFLHLFHVPYIICFYAAKGKWPYVPG---FMKYKVDNA 97
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW----EEVECQGA-CVN 146
R + ++ C I ++D + ++ C+
Sbjct: 98 ARNLFHNNDSAIRQFCNKWIQVKECFRPIFDNSNRTSTDDVETLNGKLQQCNCEKLLATE 157
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
+P+V K+ +++ E + I+ + + + +R+ S
Sbjct: 158 SPVVYFDKNYIGNVSSETIHNTIEFLESFLPPPTKKHKRKNRVRS 202
>gi|313125123|ref|YP_004035387.1| hypothetical protein Hbor_03430 [Halogeometricum borinquense DSM
11551]
gi|312291488|gb|ADQ65948.1| uncharacterized conserved protein [Halogeometricum borinquense DSM
11551]
Length = 404
Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC C G ++E R + D + + C G C + P+V +
Sbjct: 315 HVAVCTNQTCAASGAATVLEQLRQH-----ARDSDDCDVHFSRSSCLGQCGDGPIVAVYP 369
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y +TP+ E I+ +
Sbjct: 370 DSIWYGSVTPDDTERIVSS 388
>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
Length = 603
Score = 42.8 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ V VC T C + + L + +++ D + + C G C
Sbjct: 7 KKKKPAKERQVLVCRGTGCESQKAKILFDNLEHELKM----LGLDDDIEVKFTGCHGFCQ 62
Query: 146 NAP--MVMIGKDTYEDLTPERLEEIID-AFSTG 175
P +VM Y ++ PE +EI+ G
Sbjct: 63 QGPTVIVMPAGTFYCNVQPEDADEIVKIDIKDG 95
>gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4]
Length = 538
Score = 42.8 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V C +T C + + + L + V C G C P+V I
Sbjct: 21 RVHCCTSTGCQAANSLAVKKEMEQAVKTAGLQDK----IEVVGVGCMGFCGKGPIVEIEP 76
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIRPG 183
YE + PE IID + G+ PG
Sbjct: 77 QGLQYEVVKPEVAASIIDGLNGGEVKA-TPG 106
>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
Length = 614
Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M ++E + V VC C+ G + +++ ++++
Sbjct: 1 MPRDELIERLEDMRSSITKERNYKKQVLVCCGVNCLTSGNDIILDKFQSRMK----EMRL 56
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA--FSTGQGDT 179
D ++ + C G C P+V I D Y ++T + +++IID + +
Sbjct: 57 DNEINVTKTGCFGFCARGPIVEILPDKIFYTEITLDDVDKIIDKHLLKNQEIEE 110
>gi|83719806|ref|YP_440936.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
gi|167579650|ref|ZP_02372524.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis TXDOH]
gi|167617728|ref|ZP_02386359.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis Bt4]
gi|257140409|ref|ZP_05588671.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
gi|83653631|gb|ABC37694.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
Length = 105
Score = 42.8 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C C G +++ E + + K L G + + C C
Sbjct: 6 RHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+V++ + Y + ++EI+++ GQ
Sbjct: 64 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98
>gi|317133835|ref|YP_004089746.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7]
gi|315450297|gb|ADU23860.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7]
Length = 83
Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIGK 154
+Q+C + C L+G E +IE+ + I L ++ C G C V +
Sbjct: 3 IQICVGSSCHLKGSEDMIELLKQAIATHDLE----NEITLAGSFCAGRCNRVGVTVTVDD 58
Query: 155 DTYEDLTPERLEEIIDA 171
+ Y +TPE E
Sbjct: 59 EVYTGVTPEGFTEFFQK 75
>gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum]
Length = 538
Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
+ + ++A Q++ V+VC C ++E ++ G+
Sbjct: 1 MHLEDLAEQAAQYRNEDAHIEREVRVCVAASCQSAAAVPVLEALKS-----ACDTQGAGS 55
Query: 133 LSWEEVECQGACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171
+ V C G C P+V + Y D+TP+ +I+ +
Sbjct: 56 CKVKGVGCMGLCSAGPLVAVADKDCALNESALYRDVTPDDAPDIMAS 102
>gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
Length = 592
Score = 42.8 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC T C+ ++ + +H L + C G C P+V+I
Sbjct: 3 RILVCAGTGCVASHSRQVTARLKAALHAHHLEER----FQVDNTGCHGFCEQGPLVIIEP 58
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
+ Y + E +E I+ + G+
Sbjct: 59 EGILYCRVREEDVEAIVTEHLEQGR 83
>gi|119899827|ref|YP_935040.1| ferredoxin [Azoarcus sp. BH72]
gi|119672240|emb|CAL96154.1| conserved hypothetical ferredoxin [Azoarcus sp. BH72]
Length = 130
Score = 42.8 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148
R H+ VC C G + + + + + V C AC P
Sbjct: 23 HYRRHLLVCTGPRCSADGEAQALFDSLGATFKAAGLDQGELRVKRTRVSCFAACKGGPIL 82
Query: 149 MVMIGKDTYEDLTPERLEEIID 170
V Y ++TPE + I+D
Sbjct: 83 CVQPDGVWYYNVTPENMRRIVD 104
>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
12042]
gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
12042]
Length = 628
Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
+ ++ EIA + R HV VC T C ++E + ++ +
Sbjct: 6 ELRELRASAAKEIALRNPGASAAAGPERLHVLVCAGTGCTSSSSALIMEQMQQQL----I 61
Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
R D + + C G C P+V + D Y + P+ + EII+
Sbjct: 62 ARGLDQEVRVIKTGCFGLCQKGPIVAVYPDKIFYCHVKPDDVGEIIEQ 109
>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
Length = 600
Score = 42.8 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ +CG T C+ GCE++ + +++ ++ + ++ E C G C P+++I
Sbjct: 9 HIIICGGTGCVSSGCEEVQKALEDELDKQ----DLTDEINIVETGCHGLCEKGPVMVIYP 64
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y +L PE +EE++
Sbjct: 65 EGIFYCELQPEDMEELVTE 83
>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
Length = 633
Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147
+ + VC T C+ G K+ E R + + G + C G C
Sbjct: 32 KDPAKTEIVVCHGTGCLAAGSPKVTEAMRKALAEADLDIEVRPG---IKTTGCHGFCSRG 88
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P+V+I + Y+ + PE + EII +
Sbjct: 89 PLVIIQPEGIFYQKVKPEDVGEIIQS 114
>gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51
kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
Length = 552
Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G + + +C TT C G ++ + + +I + D + + CQG C A
Sbjct: 23 KSSGEKIRILIC-TTGCRALGAWEVYKTFQAEI---EMQSLKD-RVEVVDTGCQGLCTRA 77
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P+V + Y +T + EI+
Sbjct: 78 PVVTVEPMGVFYGRVTESDVHEIV 101
>gi|167835254|ref|ZP_02462137.1| ferredoxin family protein [Burkholderia thailandensis MSMB43]
Length = 109
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 84 QFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
+ R HV C C G +++ E + + K L G +
Sbjct: 1 MGHIMDPYYRHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRV 58
Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ C C P+V++ + Y + ++EI+++ GQ
Sbjct: 59 NKAGCLDRCEEGPVVVVYPEGTWYTYVDKSDIDEIVESHLRDGQ 102
>gi|257095119|ref|YP_003168760.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257047643|gb|ACV36831.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 102
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 91 GTRAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV C T C G +++I L G + + C C
Sbjct: 3 HFRHHVFFCCNQRGEGETCCNNAGATAAQMYAKDRIG--ELRLKGAGKVRINKAGCMDRC 60
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA 171
+ P++++ D Y + E +EEII
Sbjct: 61 DSGPVLVVYPDAVWYSYVDNEDIEEIIQE 89
>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
15053]
gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
15053]
Length = 595
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G +K+ E +I + L + + C G C P++++
Sbjct: 5 HVLVCGGTGCTSSGSQKIRERLEAEIKRNGLE----DEVGVVKTGCFGLCALGPIMIVYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDT 179
+ Y + E + EI+ + G+ T
Sbjct: 61 EGSFYAMVKEEDIPEIVSEHLLKGRVVT 88
>gi|326201305|ref|ZP_08191177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325988873|gb|EGD49697.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 86
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC + C L+G ++I + I L + S+ C G C V IG
Sbjct: 4 IYVCVGSSCHLKGSYQIINCFQRMIKDNNLESRVELKASF----CMGHCTTGVCVKIGDT 59
Query: 156 TYEDL 160
Y D+
Sbjct: 60 FYGDV 64
>gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
DSM 15981]
gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
DSM 15981]
Length = 1048
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
++ ++A ++ + V VCG C+ C+ + +V + L
Sbjct: 17 NLTIKSAADLAAIKKEYLARRSQYKRQVLVCGGAGCISSHCQDVKDVLFEALKTYKLE-- 74
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEE-IIDAFSTGQ 176
+ C G C P++++ D Y + PE++E ++ Q
Sbjct: 75 --DEVEVLVTGCMGTCALGPVILVQPDGVFYTKMDPEKVENVVLQHLVNDQ 123
>gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [Nostoc sp. PCC 7120]
gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120]
Length = 188
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLS-PVGTRAHVQVCGTTPCMLRGCEKLIE 114
++ + + ++ ++ F + + + P A + VC + C+ RG + L+
Sbjct: 62 INIYGTCKLNRYTGIIKLKAYQVIPFTSNPEQNLPAPPPAKIMVCQKSGCVKRGGDGLLS 121
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIGKDTYEDLTPERLEEIIDAF 172
+ + L ++ E CQ C +AP ++M+GK Y+ + PE + +++ +
Sbjct: 122 ELEKTLCDRGLLDK----VTIEHTGCQKRCSSAPNCVLMLGKKKYKKIHPEAIASLLENY 177
Query: 173 STG 175
TG
Sbjct: 178 LTG 180
>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
Length = 598
Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VCG T C+ GCE++ E + ++ K N + E C G C P++++
Sbjct: 9 HILVCGGTGCVSSGCEEVQEALKEEL-DKQGLTNEIKIV---ETGCHGFCEKGPILIVYP 64
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y ++ PE LEE+++
Sbjct: 65 EGVFYCEVQPEDLEELVEE 83
>gi|226940659|ref|YP_002795733.1| ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9]
gi|226715586|gb|ACO74724.1| Probable ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9]
Length = 106
Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C C RG +L++ +++I + L G + ++ C C
Sbjct: 5 QHHVFFCTNQREGGKDCCNNRGASELLDYAKDRI--RELGLKGAGGVRVQKAGCLDRCDY 62
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQGDTIRPGPQID 187
P++++ D Y + + ++EII + G+ P+
Sbjct: 63 GPVLVVYPDETWYTYVDRDDIDEIINEHLVHGRPVERLRLPEQG 106
>gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase
[Candidatus Kuenenia stuttgartiensis]
Length = 552
Score = 42.4 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
G + + +C TT C G ++ + + +I + D + + CQG C A
Sbjct: 23 KSSGEKIRILIC-TTGCRALGAWEVYKTFQAEI---EMQSLKD-RVEVVDTGCQGLCTRA 77
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P+V + Y +T + EI+
Sbjct: 78 PVVTVEPMGVFYGRVTESDVHEIV 101
>gi|284052538|ref|ZP_06382748.1| hypothetical protein AplaP_13803 [Arthrospira platensis str.
Paraca]
gi|291568977|dbj|BAI91249.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 190
Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
A + +C + C RG + + +V + + LH + E+ C C
Sbjct: 101 TKSQPKPAKILICQKSDCRKRGGQAVCQVLEQALCDRGLH----DQVKIEKTGCLKKCKL 156
Query: 147 AP--MVMIGKDTYEDLTPERLEEIIDA 171
P + M K Y + P + E+I+
Sbjct: 157 GPNLVFMPDKAHYTRVKPSDISEVIEK 183
>gi|310826807|ref|YP_003959164.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612]
gi|308738541|gb|ADO36201.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612]
Length = 83
Score = 42.4 bits (98), Expect = 0.045, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C + C ++G ++++ + + ++ L + C AC + V +
Sbjct: 4 IHICIGSACHVKGSYQVVQRFKELVAERGLE----NEVELMGTFCLDACSDGVAVKVDDH 59
Query: 156 TYEDLTPERLEEIIDAFSTGQG 177
Y + PE ++++ D G
Sbjct: 60 IYT-VKPEGVDQLFDQIMEGNN 80
>gi|297539794|ref|YP_003675563.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301]
gi|297259141|gb|ADI30986.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301]
Length = 103
Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
+ GT CM +G E + +++ K L + +G + C C P+++I
Sbjct: 16 RADGTACCMDKGAEAAFDHMKSR--VKKLGLSGEGKVRINRAGCLDRCGEGPLLVIYPQA 73
Query: 156 -TYEDLTPERLEEIIDA-FSTGQ 176
Y + E ++EII++ G+
Sbjct: 74 IWYTFVDNEDIDEIIESHLINGK 96
>gi|241661813|ref|YP_002980173.1| ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D]
gi|240863840|gb|ACS61501.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D]
Length = 109
Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 91 GTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C G + + E + + K L N +G + + C C
Sbjct: 4 HYQHHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRC 61
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + E ++EII + G+
Sbjct: 62 ELGPVMVVYPEAVWYTFVDKEDIDEIIQSHLVEGKP 97
>gi|167770145|ref|ZP_02442198.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM
17241]
gi|167667467|gb|EDS11597.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM
17241]
Length = 83
Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VC + C L+G +I V + +I Q+ L + S+ C G C N + I
Sbjct: 3 VYVCIGSSCHLKGSYDIINVFKQQIAQQHLEDKVNLNASF----CLGHCQNGVTIKIDDR 58
Query: 156 TYEDLTPERLEEIIDA 171
L E E+
Sbjct: 59 LVTGLNAENAAEVFQK 74
>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
Length = 616
Score = 42.4 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIG 153
HV VC T C E++I R +I + + C G C P+V++
Sbjct: 34 HVMVCAGTGCTSSNSEEIISRLRVQIEKHGLGETVK-----VVQTGCLGLCAKGPIVIVH 88
Query: 154 KD--TYEDLTPERLEEIIDA 171
D Y +TPE + EI+++
Sbjct: 89 PDDCMYTMVTPEDVSEIVES 108
>gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
Length = 534
Score = 42.4 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
T+ ++ C CM G + ++ ++ +N L V C C A
Sbjct: 15 QDSHTKIQIRCCTAAGCMSSGSL----AVKEELEKQIKEKNLGDRLEVVPVGCMKLCGFA 70
Query: 148 PMVMIGKDT-YEDLTPERLEEIIDAFSTGQGDTIR 181
P+V + +T ++ + PE EI+D + G+ + +
Sbjct: 71 PLVDVSDETCFQQVMPEVAPEIVD-VALGETPSDK 104
>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum Bf]
gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
botulinum Ba4 str. 657]
gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum Bf]
gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum Ba4 str. 657]
Length = 631
Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++E ++ + +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSSDSDKIVE----NLNAEINKLGIQDEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y + PE +EI + +G+ ++
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVKPEDAKEIAEKHL-LKGEVVQR--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|302038080|ref|YP_003798402.1| ferredoxin [Candidatus Nitrospira defluvii]
gi|300606144|emb|CBK42477.1| Ferredoxin, 2Fe-2S [Candidatus Nitrospira defluvii]
Length = 108
Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 90 VGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ H+ VC C +G +L+ + Q+ + G + C
Sbjct: 2 PKPKYHILVCTNARPPGHPKPSCGGQGSAQLLMSFNMGLMQRGIMP---GEVLVTGSSCL 58
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
G C P V++ D Y +T + I+D G+
Sbjct: 59 GPCEQGPTVVVYPDNTWYSKVTEADVATILDEHIKGGKP 97
>gi|120609033|ref|YP_968711.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1]
gi|120587497|gb|ABM30937.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G ++ + C+ + K G + + C C P+ ++ + Y +
Sbjct: 29 SCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNKAGCLDRCAGGPVAVVYPEGIWYTYV 86
Query: 161 TPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
++EI+++ GQ + + P++ R
Sbjct: 87 DTSDIDEIVESHLKNGQVVERLLTPPELGR 116
>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
Length = 630
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ V VCG T C +++I+ + +I + N +S + C G C P
Sbjct: 35 NKKDKIEVLVCGGTGCKSSNSDEIIKNFKLEIE----NINLSSKVSVKMTGCFGFCEKGP 90
Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
+V I Y ++P+ + EI++
Sbjct: 91 IVKIIPDNTFYIHVSPKDVAEIVEE 115
>gi|326315216|ref|YP_004232888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372052|gb|ADX44321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 116
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G ++ + C+ + K G + + C C P+ ++ + Y +
Sbjct: 29 SCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNKAGCLDRCAGGPVAVVYPEGTWYTYV 86
Query: 161 TPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
++EI+++ GQ + + P++ R
Sbjct: 87 DTSDIDEIVESHLKNGQVVERLLTPPELGR 116
>gi|237654532|ref|YP_002890846.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T]
gi|237625779|gb|ACR02469.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T]
Length = 107
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C + C +L + + L G++ + C G C +
Sbjct: 5 KHHVFFCCNQRQPGESCCNDHKASELQTYAKERTA--ALGLKGKGSVRVNKAGCLGRCDD 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ D Y + E ++EIID+
Sbjct: 63 GPVIVVYPDNVWYTYVDKEDIDEIIDS 89
>gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
[Pelotomaculum thermopropionicum SI]
gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
[Pelotomaculum thermopropionicum SI]
Length = 551
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+AH+ VCG C+ C ++++ + +++ L + C G C P+
Sbjct: 15 TCKAHIMVCGGQGCISSKCGEVVDALKESLNKNGLTE----QVRIILTGCMGPCDMGPVA 70
Query: 151 MIGKD--TYEDLTPERLEEIIDA 171
++ D Y L P+ E I++
Sbjct: 71 IVYPDATFYRRLRPKDAEAIVEE 93
>gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
psychrophila LSv54]
gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
psychrophila LSv54]
Length = 550
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + + +C C+ G + + + ++ R D + + V C G C
Sbjct: 16 KEHQHSFQHQLNICVAAGCLSCGSGE----LKTALQEEVARRGLDKQVCVKGVGCLGLCS 71
Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAF 172
P+V + Y+ P +E I+DA
Sbjct: 72 AGPLVALASKNVLYQGCGPADVETILDAL 100
>gi|302339490|ref|YP_003804696.1| ferredoxin 2Fe-2S [Spirochaeta smaragdinae DSM 11293]
gi|301636675|gb|ADK82102.1| ferredoxin, 2Fe-2S [Spirochaeta smaragdinae DSM 11293]
Length = 102
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLT 161
C +G L+ + ++ + + DG +S C C P++ I D Y +
Sbjct: 24 CEKKGAIGLVPYIQEELADRGM----DG-VSVAMTSCLNMCDRGPVMAIFPDNIWYGGVD 78
Query: 162 PER-LEEIIDAFSTGQ 176
E +++I+DA G+
Sbjct: 79 SEDVVDQILDALEGGR 94
>gi|114331325|ref|YP_747547.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91]
gi|114308339|gb|ABI59582.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91]
Length = 102
Score = 42.0 bits (97), Expect = 0.055, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C C + + + + +I K L + G + C C
Sbjct: 5 QHHVFFCVNQRGNCEGCCNDYHAQAMRDYAKARI--KELKLSGKGKIRINNAGCLDRCNE 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + E ++EII++ GQ
Sbjct: 63 GPVIVVYPEEVWYTYVDQEDIDEIIESHLKNGQ 95
>gi|323345788|gb|EGA80164.1| Thi11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 340
Score = 42.0 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEXKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|116749278|ref|YP_845965.1| hypothetical protein Sfum_1845 [Syntrophobacter fumaroxidans MPOB]
gi|116698342|gb|ABK17530.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
Length = 87
Score = 42.0 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+S A + +C + C RG + I++ + I + L G ++ + C+G C +
Sbjct: 1 MSDTKETAELAICMGSSCFSRGNKHNIKIIKEYIDRHGL----CGRVALKGHLCEGLCKD 56
Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171
P + + + + + + +++
Sbjct: 57 GPNITLNGEVFHSIDSASINVLLEE 81
>gi|159903758|ref|YP_001551102.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
gi|159888934|gb|ABX09148.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
Length = 114
Score = 42.0 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 93 RAHVQVC----GTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGACVN 146
H+ +C C + + + L +G + +V+C C
Sbjct: 6 SHHLLLCASPKNALCCKPENGINSWKRLKKILKDLNLEDPQRPEGIVLRSKVDCLRVCKE 65
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
P+++I D YE +TP+ +E+II+
Sbjct: 66 GPILLIWPDGIWYEKVTPDLIEQIINQ 92
>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
Length = 635
Score = 42.0 bits (97), Expect = 0.057, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + E + + + ++ C G C P+V I
Sbjct: 46 ILICGGTGCKASASHVIAEKLQQALEKN----KITDQVNVITTGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEII-DAFSTGQG 177
Y +TPE EEI+ + G+
Sbjct: 102 NTFYTQVTPEDAEEIVSEHIIGGRK 126
>gi|301058538|ref|ZP_07199545.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2]
gi|300447384|gb|EFK11142.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2]
Length = 101
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
H+ VC + C +G LI +I + L C
Sbjct: 2 EKPTHHIFVCSSFRASGEVKGKCSKKGSSDLIPYIEGEILDRGLDAL------LTSTGCM 55
Query: 142 GACVNAPMVMIGKD--TYEDLTPER-LEEIIDAFSTG 175
C N P+++I + Y ++T E ++EI+DA G
Sbjct: 56 KQCDNGPVMVIYPENLWYGNVTSEEIVDEILDALEDG 92
>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
[Dehalococcoides sp. VS]
gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
[Dehalococcoides sp. VS]
Length = 641
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C T C G KL++ RN++ ++ L D + +E C G C +V+I
Sbjct: 28 CITICCGTGCRALGSVKLVDAFRNELAKQEL----DNQVDIKETGCHGFCEKGSVVVIYP 83
Query: 155 D--TYEDLTPERLEEIIDA-FSTG 175
Y + PE +I+D G
Sbjct: 84 QNICYFHVKPEDAADIVDKTIKNG 107
>gi|257055782|ref|YP_003133614.1| ferredoxin [Saccharomonospora viridis DSM 43017]
gi|256585654|gb|ACU96787.1| ferredoxin [Saccharomonospora viridis DSM 43017]
Length = 217
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P R H+ VC C RG + + H +D + + C C +
Sbjct: 111 RPPAYRHHLLVCRGPRCSARGADATYRTLVRTL---VRHGLTDEDVLVAQTGCLFPCNHG 167
Query: 148 PMVMIGKD--TYEDLTPERLEEII-DAFSTGQG 177
P+ ++ + Y + P E ++ + + GQ
Sbjct: 168 PVAVVHPEGVWYGPMHPADTERLVREHLTDGQP 200
>gi|83747210|ref|ZP_00944253.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551]
gi|207739071|ref|YP_002257464.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
gi|83726185|gb|EAP73320.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551]
gi|206592443|emb|CAQ59349.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
Length = 109
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFKVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISSAPA 194
+++ D Y +L + I+D + G+ + + P
Sbjct: 59 MVVYPDGVWYRNLDAASVRRIVDEHLAGGRPIEDKVFHRTGLGDVEPE 106
>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
Length = 625
Score = 42.0 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR------NSDGTLSWEEVECQ 141
+ VC T C+ G +K+ E P + D + ++ CQ
Sbjct: 18 ELNSYDCRILVCSGTGCVATGSQKIYEKFMEIAKDAPGVTIEFGPHDKDAHVGVKKTGCQ 77
Query: 142 GACVNAPMV--MIGKDT--YEDLTPERLEEI----------IDAFSTGQGDTIRPGP 184
G C P+V G D Y + E +EI I+ +G + GP
Sbjct: 78 GVCELGPLVRIQKGDDVIQYTKVQIEDCQEIFEKSVQGNETIERLLYQKGGKVSRGP 134
>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
Length = 617
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 70 MAYIR-VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M +I + + + + + V VCG C+ G E+L+ + ++ K +
Sbjct: 1 MPFIESIDHLTEYRRLVRAKRDPNQLQVLVCGGPGCLPLGSEELVAAFKAEMEAKGI--- 57
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIID 170
DG + + C G C + V+I Y+ + PE + EI+D
Sbjct: 58 -DGKVILKTTGCHGLCSHGVRVLIRPQEIAYQKVQPEDVAEIVD 100
>gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
Length = 671
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R V+VC T C LRG +K++ +K+ D + C C
Sbjct: 583 EARTDRIPVKVCVGTSCFLRGSQKVL----SKLLHAVEEEKLDRFYEVQATFCSEQCDKG 638
Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
P V IG +++ E++
Sbjct: 639 PTVHIGDRVINRADGDQIVELLREM 663
>gi|153005413|ref|YP_001379738.1| ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5]
gi|152028986|gb|ABS26754.1| Ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5]
Length = 134
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 31/126 (24%)
Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV VC C +G + + ++++ ++ L D + C AC
Sbjct: 13 RHHVFVCENVRPEDDPRGSCGGKGSSAIRKALKDELKRRGL----DKQIRANAAGCLDAC 68
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIID------------AFSTGQGDTIRPGPQIDRIS 190
P +++ + Y ++ + EI++ +G I
Sbjct: 69 AFGPSMVVYPEGVWYGHVSVADVPEIVERHLVGGEPVERLRLRRLEGAPATRASAI---- 124
Query: 191 SAPAGG 196
AP GG
Sbjct: 125 -APDGG 129
>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Mahella australiensis 50-1 BON]
gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Mahella australiensis 50-1 BON]
Length = 597
Score = 42.0 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G ++LIE N+I + + + C G C P V+I
Sbjct: 7 HVLVCGGTGCTSSGAQQLIEALNNEIE----RLHLSNEVKVVQTGCLGLCERGPNVVIYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + PE +I + G+
Sbjct: 63 EGAYYCHVKPEDARDIAEEHLLKGR 87
>gi|300697246|ref|YP_003747907.1| ferredoxin protein [Ralstonia solanacearum CFBP2957]
gi|299073970|emb|CBJ53507.1| putative ferredoxin protein [Ralstonia solanacearum CFBP2957]
Length = 109
Score = 42.0 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFKVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISSAPA 194
+++ D Y +L + I+D + G+ + + P
Sbjct: 59 MVVYPDGVWYRNLDAASVRRIVDEHLAGGRPIEDKIFHRTGLGDVEPE 106
>gi|30249826|ref|NP_841896.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC
19718]
gi|30180863|emb|CAD85785.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC
19718]
Length = 102
Score = 42.0 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C C +++ + + +I K L + G + C C
Sbjct: 5 QHHVFFCINQRANGERCCNDHHAQEMRDYAKARI--KELKLSGKGKIRINNAGCLDRCSE 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P+++I + Y + E ++EII++ G+
Sbjct: 63 GPVIVIYPEEVWYTYVDQEDIDEIIESHLQNGK 95
>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 599
Score = 42.0 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
V +C C+ G + + + + D + E C GAC PM++I
Sbjct: 5 ENTVLICAGGACISAG----EKSVKGIFEETLRKYSLDNVVRVVETGCMGACDLGPMLVI 60
Query: 153 GKD--TYEDLTPERLEEIIDA 171
+ Y+ +TPE I++
Sbjct: 61 YPEGVFYQKITPENASRIVEE 81
>gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
Length = 572
Score = 42.0 bits (97), Expect = 0.062, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
V +AH+ VCG C+ C ++++ R + + + L+ C G C P+
Sbjct: 27 VLHKAHIMVCGGQGCISSKCAEVVDAIREALKKHNFSDHVKVVLT----GCMGPCDMGPV 82
Query: 150 VMIGKD--TYEDLTPERLEEI-IDAFSTGQGDT 179
++ D Y L P+ E I ++ GQ T
Sbjct: 83 AVVFPDAVFYRRLKPKDAEAIVLEHIIGGQPVT 115
>gi|24158929|pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
gi|24158930|pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 42.0 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG ++ + KI P + + AC+ P+V++ D Y +
Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGSMN---ACMMGPVVVVYPDGVWYGQV 77
Query: 161 TPERLEEIIDA-FSTGQG 177
PE ++EI++ G+
Sbjct: 78 KPEDVDEIVEKHLKGGEP 95
>gi|238028747|ref|YP_002912978.1| Ferredoxin-like protein [Burkholderia glumae BGR1]
gi|237877941|gb|ACR30274.1| Ferredoxin-like protein [Burkholderia glumae BGR1]
Length = 107
Score = 42.0 bits (97), Expect = 0.064, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
+ C + + E + + K L G + + C C P++++ +
Sbjct: 22 ADRSSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCEEGPVMVVYPEGTW 79
Query: 157 YEDLTPERLEEIIDA-FSTGQ 176
Y + + ++EI+++ G+
Sbjct: 80 YTYVDKQDIDEIVESHLRDGK 100
>gi|332971311|gb|EGK10274.1| 2Fe-2S ferredoxin [Desmospora sp. 8437]
Length = 139
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ G + H+ +C C G E++ + R +I H + + + C G C
Sbjct: 1 MAMELTGVKVHLLLCNGASCTRNGAEEVTKAIRQEIQ----HLDLGKEVHTTKTFCNGRC 56
Query: 145 VNAPMVMIGK--DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
P+V+ + Y+ + R +E++ S ++ P I + S
Sbjct: 57 KYGPIVVKYPAGEWYQQMDAGRGKELVRKLSQPGMESPVP-SYIFKTS 103
>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
Length = 635
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
+ +CG T C + + + I + + + V C G C P+V I
Sbjct: 46 ILICGGTGCKASSSQGITDNLLKAIKKSEITDK----VEVITVGCFGFCEKGPIVKIIPD 101
Query: 154 KDTYEDLTPERLEEIIDA 171
Y +TPE EEII+
Sbjct: 102 NTFYTQVTPEDAEEIINE 119
>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
Length = 596
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
RAHV +C T C+ G +K+ R ++ D + E C G C P+
Sbjct: 2 EHIRAHVLICAGTGCVSSGSKKVEAALRAELA----RTGLDKEVKVVETGCHGFCEMGPI 57
Query: 150 VMIGKD--TYEDLTPERLEEIIDA 171
V++ + Y + + E++++
Sbjct: 58 VIVYPEGVFYCRVQESDVPELVES 81
>gi|225849631|ref|YP_002729865.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1]
gi|225644814|gb|ACO03000.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1]
Length = 109
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLT 161
C +G + + + + ++ K L ++ C G C+ P V++ D Y ++
Sbjct: 22 CGEKGADMIFQKFQEELMMKNLFDK----MAVTPTGCMGPCMMGPTVVVYPDAVWYGNVK 77
Query: 162 PERLEEIIDAFSTGQGDT 179
PE + EII+ G
Sbjct: 78 PEDVPEIIEKHILGGEPV 95
>gi|195171190|ref|XP_002026390.1| GL20610 [Drosophila persimilis]
gi|194111292|gb|EDW33335.1| GL20610 [Drosophila persimilis]
Length = 189
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 9/165 (5%)
Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
+ P +R S I L+ + Q ++ + +
Sbjct: 20 KVPANRRSSG-IHLISSLEHQRNFLHLFHVPYIICFYAAKGKWPYVPG---FMKYKVDNA 75
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW----EEVECQGA-CVN 146
R + ++ C I ++D + ++ C+
Sbjct: 76 ARNLFHNNDSAIRQFCNKWIQVKECFRPIFDNSNRTSTDDVETLNGKLQQCNCEKLLATE 135
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
+P+V K+ +++ E + I+ + + + +R+ S
Sbjct: 136 SPVVYFDKNYIGNVSSETIHNTIEFLESFLPPPTKKHKRKNRVRS 180
>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
Length = 632
Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP----LHRNSDGTLSWEEVEC 140
+ + + VC T C G K+ I+QK + + D ++ C
Sbjct: 24 IKREKKLQKTSIYVCVGTGCTASGSRKVYAKFVEVINQKGLDVNIEKIDDDDTPVKKTGC 83
Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIID 170
G C P+V M TY ++ +EEI++
Sbjct: 84 CGLCSLGPLVKIMPYGITYSHVSVNDVEEIVE 115
>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
Length = 595
Score = 42.0 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VCG T C G ++++ + +I + L ++ + C G C P+++I
Sbjct: 5 HILVCGGTGCTSSGSQQILNALQTEIEKAGLKE----EVAVVQTGCHGLCALGPIMLIYP 60
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
+ Y + + + EI+ + G+ ++ + ++ G+ SL + + K+
Sbjct: 61 EGTFYSMVNVDDIPEIVTEHLLKGR--IVKRLLYNETVT---EDGIKSLNETDFYKK 112
>gi|224824990|ref|ZP_03698096.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002]
gi|224602661|gb|EEG08838.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002]
Length = 102
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
C G L+ +++ K L +G + + C G C + P++++ + Y +
Sbjct: 21 CCADFGTPALLGYMKDR--VKALGLAGEGQVRVNKAGCLGRCDDGPVMVVYPQETWYTFV 78
Query: 161 TPERLEEIIDA 171
+ L+EIID+
Sbjct: 79 DKDDLDEIIDS 89
>gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5]
gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5]
Length = 1042
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R V VCG C+ C+++ + + ++ D + C G C
Sbjct: 30 RRRKYRRQVLVCGGAGCISSHCQEVKDALYESLA---NYQLKD-EVEVLVTGCMGTCSLG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P++++ D Y + PE+++ I+
Sbjct: 86 PVILVEPDGVFYTQMEPEKVDHIV 109
>gi|170289108|ref|YP_001739346.1| hydrogenase large subunit [Thermotoga sp. RQ2]
gi|170176611|gb|ACB09663.1| hydrogenase large subunit domain protein [Thermotoga sp. RQ2]
Length = 645
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P G + V+VC T C +G ++++ K+ + +G + C C +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILK----KLVDYVKENDREGKIEVLGTFCVENCGASP 620
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
V++ T E++ ++ S
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSKN 644
>gi|148270497|ref|YP_001244957.1| hydrogenase large subunit [Thermotoga petrophila RKU-1]
gi|281412803|ref|YP_003346882.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila
RKU-1]
gi|281373906|gb|ADA67468.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
Length = 645
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P G + V+VC T C +G ++++ K+ + +G + C C +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILK----KLVDYVKENDREGKIEVLGTFCVENCGASP 620
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
V++ T E++ ++ S
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSKN 644
>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 584
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++V + M G K++E + ++ + L E C G C P+V +
Sbjct: 2 KIRVGLGSCGMAAGGNKVMECIQQELRSRNLDIP------VEPTGCIGLCFFEPLVDVID 55
Query: 155 ----DTYEDLTPERLEEIIDAFSTGQGD 178
TY ++TPE + +II++ G+
Sbjct: 56 GDDVYTYGNVTPEMIPKIIESHVIGKKP 83
>gi|312131825|ref|YP_003999165.1| sucraseferredoxin family protein [Leadbetterella byssophila DSM
17132]
gi|311908371|gb|ADQ18812.1| Sucraseferredoxin family protein [Leadbetterella byssophila DSM
17132]
Length = 101
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L+ + + K+ +K L + T+ ++ C C P +++ + Y ++
Sbjct: 20 CCGSERGMILVNLFKEKMKEKGL----NKTMRAQKTGCLDVCAFGPGMVVYPEGVFYGNV 75
Query: 161 TPERLEEIIDA-FSTG 175
TPE ++EII++ G
Sbjct: 76 TPEDVDEIIESHLENG 91
>gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus
Pelagibacter ubique HTCC1062]
Length = 552
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
I+ +A +M + +FY + S +A V C + CM G ++ +
Sbjct: 33 DGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKAFV--CNGSACMCAGTQEP---LKK 87
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
K+ +K C G C + Y ++++II
Sbjct: 88 KLQEKLGDDKVGEMF------CLGHCYENNAFHYDGENYAGNDINKIDQIIK 133
>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
Length = 599
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +CG T C G + L++ + ++ + L + ++ C G C P+V++ +
Sbjct: 8 ILLCGGTGCTSSGSQTLVKEFKKELIKHELMDEVELVIT----GCFGLCELGPVVIVYPE 63
Query: 156 --TYEDLTPERLEEIIDA-FSTGQG 177
Y + P + E+++ G+
Sbjct: 64 GTFYSRVEPSDIPELVEEHLVKGRP 88
>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
Length = 626
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRN 128
E+ ++++ + V R + VC T C+ G + + I +K
Sbjct: 7 EELNDISSKYKAALVRQRKQILVCAGTGCVAGGSLNIYRRFKEIIKEKGLEVTLELKEEP 66
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
D T+ ++ C G C P++ I + Y ++ + EEII+
Sbjct: 67 HDNTIGLKKSGCHGFCEMGPLIRIEPEGWLYIKVSIDDCEEIIEK 111
>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
Length = 600
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC T C+ G + L + ++ K + G + E C G C P++++
Sbjct: 9 HVLVCTGTGCVSSGAKDLKTILDEELAAKDM----SGEIKIVETGCHGFCEKGPIMIVYP 64
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y ++ + ++EI+D G+
Sbjct: 65 EGVFYCEVNEKDVKEIVDEHLLKGR 89
>gi|296139316|ref|YP_003646559.1| hypothetical protein Tpau_1599 [Tsukamurella paurometabola DSM
20162]
gi|296027450|gb|ADG78220.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length = 246
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
R V VC C RG L ++ D + CQ C +AP+
Sbjct: 133 PSHRHQVLVCRGPRCSARGAAALSAALGAELR---RRALDDDDVLMTVTGCQFPCNHAPV 189
Query: 150 VMIGKD--TYEDLTPERLEEIIDA 171
V + D Y +T E + +++
Sbjct: 190 VTVQPDDAWYGGITVEDVPALVED 213
>gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 552
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
I+ +A +M + +FY + S +A V C + CM G ++ +
Sbjct: 33 DGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKAFV--CNGSACMCAGTQEP---LKK 87
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
K+ +K C G C + Y ++++II
Sbjct: 88 KLQEKLGDDKVGEMF------CLGHCYENNAFHYDGENYAGNDINKIDQIIK 133
>gi|319796227|ref|YP_004157867.1| ferredoxin-like protein [Variovorax paradoxus EPS]
gi|315598690|gb|ADU39756.1| ferredoxin-like protein [Variovorax paradoxus EPS]
Length = 117
Score = 41.6 bits (96), Expect = 0.071, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C + ++ + C+ K K + G + + C C P+ ++ + Y +
Sbjct: 30 SCAMHNAQEGFDRCKAK--VKEAGLSGPGKVRVNKAGCLDRCAGGPVAVVYPEAVWYTFV 87
Query: 161 TPERLEEIIDA-FSTGQ 176
+ ++EI+++ G+
Sbjct: 88 DADDIDEIVESHLKNGE 104
>gi|115352996|ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
gi|115282984|gb|ABI88501.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
Length = 105
Score = 41.6 bits (96), Expect = 0.072, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQRDPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
15579]
gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
15579]
Length = 631
Score = 41.6 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 24/141 (17%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T + + + VCG T C +K++ R +I +
Sbjct: 27 THEEETAVENKKCERLILVCGGTGCKSADSDKIVANLREEI----NKLGLQEEVKVSITG 82
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
C G C P+V I D Y + PE +EI + +G+ +
Sbjct: 83 CFGFCEKGPIVKINPDNVFYVKVKPEDAKEIAEKHL-LKGEVVER--------------- 126
Query: 198 TSLLDNNSKKRGKKKKDDKIS 218
LL + K K+ D++S
Sbjct: 127 --LLYEEPTLKEKVKRQDEMS 145
>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
[Heliobacterium modesticaldum Ice1]
gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
[Heliobacterium modesticaldum Ice1]
Length = 659
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 65 ANILDMAYIRVLEIAT--FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
+ I +E AT L R + +C T C+ G ++ R
Sbjct: 39 CRKARLERIEAVEGATPAQRPMQNLIHESRRWRLLLCAGTGCIASGGAPVVAALREV--- 95
Query: 123 KPLHRNSDGTLSWEEVECQGACVNAP--MVMIGKDTYEDLTPERLEEIID 170
R ++ C G C P +V G Y ++ + +I+D
Sbjct: 96 -VEERGMSNQVAIVLTGCHGFCEQGPIVVVEPGNTFYRRVSAADVRDIVD 144
>gi|117923365|ref|YP_863982.1| ferredoxin 2Fe-2S [Magnetococcus sp. MC-1]
gi|117607121|gb|ABK42576.1| ferredoxin, 2Fe-2S [Magnetococcus sp. MC-1]
Length = 103
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 90 VGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + HV VC C G + E ++ ++ ++ + C
Sbjct: 1 MKPKHHVFVCMNRRPEGHPRGSCQASGSQGTFEAFNTELEKRGMYE----QVFVTGTFCM 56
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C P+ ++ + Y ++ PE + EI D G+ +
Sbjct: 57 GPCDRGPVAVVYPEGVWYGNVKPEDVSEIFDKHFVDGGEPVER 99
>gi|289549145|ref|YP_003474133.1| ferredoxin 2Fe-2S [Thermocrinis albus DSM 14484]
gi|289182762|gb|ADC90006.1| ferredoxin, 2Fe-2S [Thermocrinis albus DSM 14484]
Length = 110
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG +++ K+ P S C AC P+V++ + Y ++
Sbjct: 21 SCSDRGSRDVLQRLMEKVQFDPELFMST---MVTPTGCLNACGAGPIVVVYPEGVWYGNV 77
Query: 161 TPERLEEIIDAFSTGQGDT 179
PE ++EI++ G
Sbjct: 78 RPEDVDEIVEKHLKGNEPV 96
>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
Length = 640
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+R + VC T C G KL++ R+++ ++ L D +E C G C
Sbjct: 20 KQSASRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLENQVD----IKETGCHGFCEKG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGGLT 198
+V+I Y + PE ++I+ TI+ G ++R + + PA G
Sbjct: 76 SVVVIYPQNICYFHVKPEDAADVIE-------KTIKTGELVERLLYADPATGEK 122
>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
Length = 632
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G K+IE ++ D + + C G C P++++
Sbjct: 33 HVLVCGGTGCTSSGSPKIIEKLEEELAANG---LKDK-VQIVKTGCFGLCERGPIMIVYP 88
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDT 179
+ Y + + + I++ G
Sbjct: 89 EGSFYSRVKVDEIPRIVEEHLVGGNPV 115
>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
aciditrophicus SB]
gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
aciditrophicus SB]
Length = 642
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C + C+ G ++I R +I + L D + C G C P+V+I
Sbjct: 27 CISICAGSGCVASGALEVIAAFREEIEKHGLAATVD----TKGTGCPGFCERGPLVVIYP 82
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y +TPE + EII
Sbjct: 83 EEICYLQVTPEDVPEIIAQ 101
>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
Length = 640
Score = 41.6 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+R + VC T C G KL++ R+++ ++ L D +E C G C
Sbjct: 20 KQSASRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLENQVD----IKETGCHGFCEKG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGGLT 198
+V+I Y + PE ++I+ TI+ G ++R + + PA G
Sbjct: 76 SVVVIYPQNICYFHVKPEDAADVIE-------KTIKTGELVERLLYADPATGEK 122
>gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima MSB8]
Length = 645
Score = 41.6 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P G + V+VC T C +G ++++ K+ + +G + C C +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILK----KLVDYVKENDMEGKIEVLGTFCVENCGASP 620
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
V++ T E++ ++ S
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSKN 644
>gi|170704065|ref|ZP_02894700.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
gi|171320086|ref|ZP_02909154.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
gi|172061848|ref|YP_001809500.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
gi|170131026|gb|EDS99718.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
gi|171094683|gb|EDT39729.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
gi|171994365|gb|ACB65284.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
Length = 105
Score = 41.6 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|150025827|ref|YP_001296653.1| ferredoxin [Flavobacterium psychrophilum JIP02/86]
gi|149772368|emb|CAL43848.1| Probable ferredoxin [Flavobacterium psychrophilum JIP02/86]
Length = 83
Score = 41.6 bits (96), Expect = 0.081, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 103 PCMLRGCEKLIEVCRN-KIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIGKDTYED 159
C C K E+ + K K + T+ ++EC G C AP+V + YE+
Sbjct: 13 ICNGSKCGKHKEIKKQFKSSIKEGGLH--KTIEIFKIECSGRCKYAPIVYAQPQNNWYEN 70
Query: 160 LTPERLEEIIDAF 172
+ E+ ++II+
Sbjct: 71 VDLEKAKKIIEKM 83
>gi|292493993|ref|YP_003533135.1| colbalt chelase thioredoxin [Haloferax volcanii DS2]
gi|291369163|gb|ADE01393.1| colbalt chelase thioredoxin [Haloferax volcanii DS2]
Length = 406
Score = 41.6 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC C G ++E R + D + C G C + P+V +
Sbjct: 317 HVAVCTNQTCAASGAATVLEQLRQ-----GVRDADDCDVHVSRSSCLGQCGDGPIVAVYP 371
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y +TP+ + I+ +
Sbjct: 372 DSVWYGGVTPDDTDRIVSS 390
>gi|218513055|ref|ZP_03509895.1| formate dehydrogenase subunit gamma [Rhizobium etli 8C-3]
Length = 42
Score = 41.6 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
++ E V C G C AP M+ + Y + + E++
Sbjct: 1 MTLEAVYCLGLCACAPSAMLDGEVYGRVDDQLATELVAEAR 41
>gi|56477464|ref|YP_159053.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1]
gi|56313507|emb|CAI08152.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1]
Length = 106
Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C T C + +++I L G + + C C
Sbjct: 5 KHHVFFCCNQREPGDTCCNNHNATGMQTYAKDRIA--ALGLKGRGKIRINKAGCLDRCDE 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ D Y + E ++EIID
Sbjct: 63 GPVLVVYPDNVWYTYIDKEDIDEIIDE 89
>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
Length = 624
Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGTLSWEEVECQGACVNAP--M 149
V VC T C +G K+ E + + ++ N D + C G C + P +
Sbjct: 28 VYVCVGTGCAAKGSLKVYEALKKIFKENNVNVNLQKLDDNEERVRKTGCCGRCSSGPWVI 87
Query: 150 VMIGKDTYEDLTPERLEEIIDA-FSTGQG 177
VM Y ++ PE ++EI + G+
Sbjct: 88 VMPYGYFYSEVKPEDVKEIYEETILKGKP 116
>gi|73539984|ref|YP_294504.1| putative ferredoxin [Ralstonia eutropha JMP134]
gi|72117397|gb|AAZ59660.1| putative Ferredoxin [Ralstonia eutropha JMP134]
Length = 106
Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 93 RAHVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ HV C C + K ++ K ++ +G + + C C
Sbjct: 6 KHHVFFCLNQREAGENCCAQHNAKAMQEYAKKRCKELGIAGGEGRVRINKAGCLNRCELG 65
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + + ++EIID+ G+
Sbjct: 66 PVLVVYPEAVWYTFVDEKDIDEIIDSHLLNGKP 98
>gi|296444629|ref|ZP_06886593.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b]
gi|296257897|gb|EFH04960.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b]
Length = 110
Score = 41.6 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G + L + + K+ +PL +S C G C P++++ Y
Sbjct: 28 SCTTSGAKPLWDRLQAKLGAQPLP-----DVSMTATACLGFCRAGPLMVVYPQGVWYAPR 82
Query: 161 TPERLEEIIDA 171
TPE ++EI+ +
Sbjct: 83 TPEDIDEIVQS 93
>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
[Geobacter metallireducens GS-15]
gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
[Geobacter metallireducens GS-15]
Length = 635
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC C+ G ++I + ++ L ++ + C G C P+VMI
Sbjct: 27 CISVCAGAGCLASGAAEVIAAFKTELEFHGLTT----EVNTKGTGCPGFCERGPIVMIYP 82
Query: 155 D--TYEDLTPERLEEIIDAFSTGQG-------DTIRPGPQIDRISSAP 193
+ Y + PE + EI+ + + G + R S P
Sbjct: 83 EGICYLKVKPEDVPEIVSHTIKEKKVVDRLLYEDPATGTRALRESDIP 130
>gi|269469007|gb|EEZ80575.1| ferredoxin [uncultured SUP05 cluster bacterium]
Length = 103
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
H+ C C G +++ ++K + + +G + E C G C + P
Sbjct: 7 HIFFCNNVRKDGKACCSQLGAKQMYRHAKDKCRDEGM--LGEGKIGISESRCLGRCEHGP 64
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
+ ++ D Y+ + + ++EII
Sbjct: 65 VAVVYPDNVWYQYIDEDDVDEIIAE 89
>gi|34497956|ref|NP_902171.1| ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC 12472]
gi|34103811|gb|AAQ60172.1| probable ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC
12472]
Length = 102
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G L+ ++K K L +G + + C G C + P++++ + Y +
Sbjct: 21 CCNNHGSSALLGYMKDK--VKALGLAGEGKIRVNKAGCLGRCDDGPVMVVYPEETWYTFV 78
Query: 161 TPERLEEIIDA 171
+ ++EI+
Sbjct: 79 DKDDIDEIVSE 89
>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
Z-2901]
Length = 592
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
V +C T C+ G K+ E R ++ ++ + C G C P+V+I
Sbjct: 1 MRKVLICAGTGCISSGSPKVTEKFREELSKRGITDIE-----VYNTGCHGFCEQGPIVII 55
Query: 153 GKD--TYEDLTPERLEEIIDA 171
D Y + + + EII+
Sbjct: 56 EPDKTFYCRVEVDDVPEIIEK 76
>gi|6322616|ref|NP_012690.1| Thi11p [Saccharomyces cerevisiae S288c]
gi|1352508|sp|P47183|THI11_YEAST RecName: Full=Pyrimidine precursor biosynthesis enzyme THI11
gi|1015913|emb|CAA89689.1| THI11 [Saccharomyces cerevisiae]
gi|259147621|emb|CAY80872.1| Thi11p [Saccharomyces cerevisiae EC1118]
gi|285813043|tpg|DAA08941.1| TPA: Thi11p [Saccharomyces cerevisiae S288c]
gi|323332836|gb|EGA74240.1| Thi11p [Saccharomyces cerevisiae AWRI796]
Length = 340
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEDKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|319955893|ref|YP_004167156.1| 2fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511]
gi|319418297|gb|ADV45407.1| 2Fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511]
Length = 126
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
P +R + + + Q+ + + GT+ + C G C P++++ G Y +L
Sbjct: 27 PSCVRQDDPESQQLFQYLAQQLMMKGIIGTVQPVQTGCLGRCQQGPVMLVEPGHTMYVNL 86
Query: 161 TPERLEEIIDA 171
E+++ II+
Sbjct: 87 NKEKIDRIIEE 97
>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
Length = 596
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ VCG T C E++I R + C G C P+V +
Sbjct: 5 NNYILVCGGTGCRASRSEEIIAALRRALD----RTGESERTRVIRTGCFGFCEQGPIVKM 60
Query: 153 --GKDTYEDLTPERLEEIIDA 171
Y + PE EEI+
Sbjct: 61 IPDNTFYVSVKPEDAEEIVRE 81
>gi|241766086|ref|ZP_04763999.1| ferredoxin-like protein [Acidovorax delafieldii 2AN]
gi|241363890|gb|EER59196.1| ferredoxin-like protein [Acidovorax delafieldii 2AN]
Length = 119
Score = 41.2 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G ++ + C+ + K G + + C C P+ ++ + Y +
Sbjct: 32 SCAHHGAQEAFDRCKAQ--VKAAGLAGPGKVRVNKAGCLDRCAAGPVAVVYPEGTWYSYV 89
Query: 161 TPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
++EI+++ GQ + + P++ R
Sbjct: 90 DASDVDEIVESHLKNGQIVERLLTPPELGR 119
>gi|221211093|ref|ZP_03584072.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1]
gi|221168454|gb|EEE00922.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1]
Length = 143
Score = 41.2 bits (95), Expect = 0.093, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
C + + E + + K L G + + C C P++++ +
Sbjct: 58 ADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCEEGPVMVVYPEGTW 115
Query: 157 YEDLTPERLEEIIDA-FSTGQ 176
Y + ++EI+++ G+
Sbjct: 116 YTYVDKADIDEIVESHLRDGK 136
>gi|254577717|ref|XP_002494845.1| ZYRO0A11000p [Zygosaccharomyces rouxii]
gi|238937734|emb|CAR25912.1| ZYRO0A11000p [Zygosaccharomyces rouxii]
Length = 340
Score = 41.2 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + ++ + M + ++ + CM
Sbjct: 115 GEFGKIQLDELTKHYGMTPNDYTAV---RCGMNVAKYIIEGKIHAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++++ + A
Sbjct: 166 VQLEEFLKEQGRSASEAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVKKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|169236276|ref|YP_001689476.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1]
gi|167727342|emb|CAP14128.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1]
Length = 407
Score = 41.2 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
HV VC C G ++E R + + +L C G C + P
Sbjct: 312 HDAPDRHVAVCTNQTCAAEGAPAVLERLRQE-----ARDADEDSLRVTRTSCLGQCGDGP 366
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
V + D Y+ + P+ I+ +
Sbjct: 367 NVAVYPDGVWYQRVDPDDAGRIVSS 391
>gi|16554498|ref|NP_444222.1| ferredoxin [Halobacterium sp. NRC-1]
Length = 397
Score = 41.2 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
HV VC C G ++E R + + +L C G C + P
Sbjct: 302 HDAPDRHVAVCTNQTCAAEGAPAVLERLRQE-----ARDADEDSLRVTRTSCLGQCGDGP 356
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
V + D Y+ + P+ I+ +
Sbjct: 357 NVAVYPDGVWYQRVDPDDAGRIVSS 381
>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Ilyobacter polytropus DSM 2926]
gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Ilyobacter polytropus DSM 2926]
Length = 595
Score = 41.2 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
HV +CG T C+ ++ + + +K + + C G C P+V M
Sbjct: 6 HVLICGGTGCLSSKSRQIADNINTVLKEKGME----DQVEVVLTGCFGFCEKGPIVKIMP 61
Query: 153 GKDTYEDLTPERLEEIIDA--FSTGQGDT-----IRPGPQI 186
Y ++ PE I++ + +T + G +I
Sbjct: 62 ENTFYVEVKPEDAGRIVEEDLIKGDKIETLLYRDPKTGTRI 102
>gi|284164276|ref|YP_003402555.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena
turkmenica DSM 5511]
gi|284013931|gb|ADB59882.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena
turkmenica DSM 5511]
Length = 410
Score = 41.2 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
HV VC C G ++E R + C G C + P
Sbjct: 315 HDAPEKHVAVCMNQTCAEMGSPSVLERLRQEARDSDHC-----DARITRSSCLGRCGDGP 369
Query: 149 MVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
MV + D Y D+ + E I+ D +
Sbjct: 370 MVAVYPDGIWYGDVASQDAERIVGDHLDRDR 400
>gi|207724362|ref|YP_002254759.1| ferredoxin protein [Ralstonia solanacearum MolK2]
gi|206589580|emb|CAQ36541.1| ferredoxin protein [Ralstonia solanacearum MolK2]
Length = 109
Score = 41.2 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFKVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISSAPA 194
+++ D Y +L + I+D + G+ + + P
Sbjct: 59 MVVYPDGVWYRNLDATSVRRIVDEHLAGGRPIEDKVFHRTGLGDVEPE 106
>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Desulfotomaculum acetoxidans DSM 771]
gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Desulfotomaculum acetoxidans DSM 771]
Length = 677
Score = 41.2 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
P + H+ VC T C +++I+ +I G + C G C
Sbjct: 23 LDHRPASEQRHLLVCAGTACTSSASQEIIKELDRQIK----EHKLTGKAKVFKTGCFGFC 78
Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDA 171
P +V Y + E ++++++
Sbjct: 79 QQGPIVVVQPDNIFYCRVKKENVKDLVEK 107
>gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
Length = 666
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P + V++C T C ++G K++ + + + + C C NAP
Sbjct: 575 PEEEKIKVRICLGTSCYIKGSYKILSD----LIEVVRKEDWAKNVEVVGTFCTENCSNAP 630
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
V+I +++E++ + + +
Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQE 660
>gi|161523588|ref|YP_001578600.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616]
gi|189351642|ref|YP_001947270.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616]
gi|221199885|ref|ZP_03572928.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M]
gi|221207447|ref|ZP_03580456.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2]
gi|160341017|gb|ABX14103.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616]
gi|189335664|dbj|BAG44734.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616]
gi|221172650|gb|EEE05088.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2]
gi|221180124|gb|EEE12528.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M]
Length = 105
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
C + + E + + K L G + + C C P++++ +
Sbjct: 20 ADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCEEGPVMVVYPEGTW 77
Query: 157 YEDLTPERLEEIIDA-FSTGQ 176
Y + ++EI+++ G+
Sbjct: 78 YTYVDKADIDEIVESHLRDGK 98
>gi|10581045|gb|AAG19841.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 199
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
HV VC C G ++E R + + +L C G C + P
Sbjct: 104 HDAPDRHVAVCTNQTCAAEGAPAVLERLRQE-----ARDADEDSLRVTRTSCLGQCGDGP 158
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
V + D Y+ + P+ I+ +
Sbjct: 159 NVAVYPDGVWYQRVDPDDAGRIVSS 183
>gi|323349366|gb|EGA83590.1| Thi5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 282
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 57 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 107
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ K + L +++ C G C ++ I D + PE++ + + A
Sbjct: 108 VELEEYLASKADQASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 167
Query: 174 T 174
Sbjct: 168 K 168
>gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
Length = 529
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
C ++ C+ + + ++ +G + V C G+C PMV I +
Sbjct: 23 HCCTSSGCLASQGLE----IQKRLEAAVAEAGLEGEVEVVGVGCIGSCGQGPMVEIAPEG 78
Query: 156 -TYEDLTPERLEEIIDAFSTGQ 176
YE + PE + I+ A + G+
Sbjct: 79 TLYEYVRPEDADAIVAAINGGE 100
>gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
Length = 666
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P + V+VC T C L+G K++ + ++ + C C NAP
Sbjct: 575 PEEEKVKVRVCLGTSCYLKGSYKILSDLIEIVRKEE----WAKNIEVVGTFCTENCSNAP 630
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
V+I +++E++ + + +
Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQE 660
>gi|220905651|ref|YP_002480962.1| hypothetical protein Cyan7425_0205 [Cyanothece sp. PCC 7425]
gi|219862262|gb|ACL42601.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
Length = 204
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+A + VC + C RG + + + + L ++ + C C P+
Sbjct: 108 PAAKAKILVCQGSDCRARGARAVQQKLEQTLDDRGLT----NQVTVKSTGCMHCCKKGPV 163
Query: 150 V--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
V M K+ Y+ +TP ++ ++ + R
Sbjct: 164 VVFMPDKNRYQQVTPTQIPTLVSENIMSEEIKPETCSTYSR 204
>gi|186685846|ref|YP_001869042.1| hypothetical protein Npun_F5801 [Nostoc punctiforme PCC 73102]
gi|186468298|gb|ACC84099.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 212
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 52 QEGWVSRAAIEVVANILDM----AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
++G ++ A V+A +M V E + + ++ P +A + VC + CM R
Sbjct: 68 KDGTITLKAERVMAARSEMGRVQTTTPVQEPPSIHN-VKVKPAKAKATILVCQKSDCMKR 126
Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VMIGKDTYEDLTPERLE 166
G + + + + + L ++ + C C P VM K + + ++
Sbjct: 127 GGKAVCQALEAALSDRGLE----DQVTIKGTGCMKNCKAGPNLVMPDKTRHSRIQAAQVP 182
Query: 167 EIIDAFSTGQGDTIRP 182
++D + +P
Sbjct: 183 RLMDKHFGDKSLEAQP 198
>gi|239814020|ref|YP_002942930.1| hypothetical protein Vapar_1013 [Variovorax paradoxus S110]
gi|239800597|gb|ACS17664.1| conserved hypothetical protein [Variovorax paradoxus S110]
Length = 118
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 95 HVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
H+ VC C G + L + +K L+ + + V C AC P++ +
Sbjct: 15 HLLVCTGPRCSPDGASQDLFDSLGDKFKAAGLNEGA-LRVKRSRVGCFAACKGGPVMCVQ 73
Query: 154 KD--TYEDLTPERLEEIIDA 171
D Y ++TPE ++ I+
Sbjct: 74 PDGTWYYNVTPENMDRILSQ 93
>gi|154249016|ref|YP_001409841.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Fervidobacterium nodosum Rt17-B1]
gi|154152952|gb|ABS60184.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Fervidobacterium nodosum Rt17-B1]
Length = 96
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ V +C + C L+G + E + I + L + + S C G CVN
Sbjct: 8 KNEKFVVSICFGSSCHLKGSYSIAERLKEFIEKNKLENSVELKGSL----CLGMCVNGVN 63
Query: 150 VMIGKDTYEDLTPERLEEIIDAFST 174
++I ++ E +E + +
Sbjct: 64 ILIDDKLLSNINCENIEVVYEYLRN 88
>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
Length = 624
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRN-SDGTLSWEEVECQGACVNAP 148
+ VC T C+ G ++ + + K + K + ++ + C G C P
Sbjct: 25 RILVCAGTGCVAGGSLEIFDELKKKVENLSLPVKVGLLEEKESNVTVKTSGCHGFCEKGP 84
Query: 149 MVMIGK--DTYEDLTPERLEEII-DAFSTGQ 176
+V I + ++ + ++EII D G+
Sbjct: 85 LVKIEPLGILFTKVSQDDVDEIINDTIKAGK 115
>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
Length = 596
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
H+ VCG T C + +I + + ++ L + C G C P+V M
Sbjct: 6 HILVCGGTGCRASASKNIICRLEDCLKERALE----DEVQVIATGCFGFCEKGPIVKIMP 61
Query: 153 GKDTYEDLTPERLEEII-DAFSTGQG 177
Y + PE EEI+ + G+
Sbjct: 62 DNTFYVQVKPEDAEEIVNEHIIKGRK 87
>gi|283853653|ref|ZP_06370886.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
gi|283570955|gb|EFC18982.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
Length = 80
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + +C + C RG +K + + + L + C+ C + P + I
Sbjct: 2 KHDIVICMGSSCFARGNKKHLLLIEQYLADHGLTDT----VVLSGSRCEDQCTSGPNIRI 57
Query: 153 GKDTYEDLTPERLEEII 169
Y D+ ERL E++
Sbjct: 58 DGQLYGDINTERLMELL 74
>gi|17545048|ref|NP_518450.1| ferredoxin 2FE-2S protein [Ralstonia solanacearum GMI1000]
gi|17427338|emb|CAD13857.1| putative ferredoxin 2fe-2s protein [Ralstonia solanacearum GMI1000]
gi|299068145|emb|CBJ39362.1| putative ferredoxin [Ralstonia solanacearum CMR15]
Length = 108
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 91 GTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C G + + E + + K L N +G + + C C
Sbjct: 4 HYQHHVFFCLNEREDGARCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRC 61
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + E ++EII + G+
Sbjct: 62 ELGPVLVVYPEAVWYTFVDREDIDEIIQSHLIEGKP 97
>gi|83746893|ref|ZP_00943940.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551]
gi|207727768|ref|YP_002256162.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2]
gi|207742172|ref|YP_002258564.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609]
gi|300705315|ref|YP_003746918.1| ferredoxin [Ralstonia solanacearum CFBP2957]
gi|83726478|gb|EAP73609.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551]
gi|206591009|emb|CAQ56621.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2]
gi|206593560|emb|CAQ60487.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609]
gi|299072979|emb|CBJ44336.1| putative ferredoxin [Ralstonia solanacearum CFBP2957]
Length = 108
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 91 GTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C G + + E + + K L N +G + + C C
Sbjct: 4 HYQHHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRC 61
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + E ++EII + G+
Sbjct: 62 ELGPVLVVYPEAVWYTFVDREDIDEIIQSHLIEGKP 97
>gi|167816879|ref|ZP_02448559.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
pseudomallei 91]
Length = 65
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
+ + + + D ++ E V C G C +P + I + + ++P R + + DA
Sbjct: 1 AHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKMSPARFDALFDA 57
>gi|239906687|ref|YP_002953428.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1]
gi|239796553|dbj|BAH75542.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1]
Length = 101
Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIGKDTYEDL 160
C +G L+ + + D C C + P+V M Y+++
Sbjct: 23 ICHKKGSHNLLGYM------EEGILDRDIDARVVSTGCLKQCEDGPVVVVMPNNWWYKEI 76
Query: 161 T-PERLEEIIDAFSTGQ 176
++++EI+DA G+
Sbjct: 77 DSEDKVDEILDALENGE 93
>gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
[Synechococcus sp. WH 5701]
gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
[Synechococcus sp. WH 5701]
Length = 528
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK- 154
++ C + C+ RG L+ I + L + V C G C P++ +
Sbjct: 4 LRCCASAGCLARGSGALMGALETAISRGELGDR----IQLRPVGCLGPCSQGPLLALDPD 59
Query: 155 -DTYEDLTPERLEEIIDAFS--------TGQGDTIRPGPQID-RIS-SAP 193
D Y + P+ E ++ A + + Q ++ P R+ S P
Sbjct: 60 GDLYAGVDPQDAETLVAALARRQHQDCDSAQAPPLKWTPARGERLDLSEP 109
>gi|307728306|ref|YP_003905530.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003]
gi|323524596|ref|YP_004226749.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001]
gi|307582841|gb|ADN56239.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003]
gi|323381598|gb|ADX53689.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001]
Length = 107
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 KYHVFFCLNQREPGAERPSCANCNAQAMQEHAKKR--VKKLGLAGPGQVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P +++ + Y + ++EI+D+ + G+
Sbjct: 64 ELGPALVVYPEGVWYTYVDESDIDEIVDSHLANGK 98
>gi|219848576|ref|YP_002463009.1| hypothetical protein Cagg_1672 [Chloroflexus aggregans DSM 9485]
gi|219542835|gb|ACL24573.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
Length = 80
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA-FSTGQGD 178
G L E++C AC + P VMI D + +TP++L E++ + + +
Sbjct: 32 GELRVVELDCMAACDDVPAVMIDFDYFPRVTPQQLIELVQSRLREVKVE 80
>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
Length = 631
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ ++ VCG T C +V + + + ++ E C G C P
Sbjct: 36 NKRCKRYITVCGGTGCKSAEG----DVIVSNLKAEVEKAGLSEEVTVEIAGCFGFCEKGP 91
Query: 149 MVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
+V I D Y +TPE ++I+ + G+
Sbjct: 92 IVKISPDNVFYVHVTPEDTQDIVNEHLLKGK 122
>gi|325972700|ref|YP_004248891.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy]
gi|324027938|gb|ADY14697.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy]
Length = 88
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA-- 147
+ HVQ+C T C ++G L+ ++ L + E V C G C +A
Sbjct: 3 KKEKVHVQICVGTACFVQGGADLL------LYNDFLDPAVLCSCEIEGVSCLGGCKDAQS 56
Query: 148 ----PMVMIGKDTYEDLTPERLEEIIDA 171
P V IG+ Y + E+L +++
Sbjct: 57 KDRPPYVRIGEKVYGSVNQEKLCKLLAE 84
>gi|317133834|ref|YP_004089745.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7]
gi|315450296|gb|ADU23859.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7]
Length = 79
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V VC + C L+G +++E + I + + D + C G C V +
Sbjct: 2 KVTVCIGSSCHLKGSRQVVEQLQYLIAE---EKLGDK-IKLGGTFCMGKCQQGVCVTVDD 57
Query: 155 DTYEDLTPERLEEIIDA 171
Y +TPE + E +
Sbjct: 58 VFYS-VTPETVGEFFEK 73
>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
Length = 623
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDG-TLSWEEVEC 140
V VC T C+ G +K+ E +I + D + + C
Sbjct: 16 VNEQIKSYTCRVLVCSGTGCIASGAQKIYEEMSVLCERIDGVTVEMQKDVPHVGVIKTGC 75
Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG 177
QG C P++ I Y + PE +EI++ G+
Sbjct: 76 QGLCELGPLMRIEPYDYQYVHVQPEDCKEIVERTILEGKP 115
>gi|167585313|ref|ZP_02377701.1| Ferredoxin-like protein [Burkholderia ubonensis Bu]
Length = 105
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGK 98
>gi|217076874|ref|YP_002334590.1| hydrogenase-1 [Thermosipho africanus TCF52B]
gi|217036727|gb|ACJ75249.1| hydrogenase-1 [Thermosipho africanus TCF52B]
Length = 658
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ V+VC T C +G ++ + ++++ + + C C +P
Sbjct: 573 EEDKKTTVKVCLGTSCYSKGSYDILSDLIDVVNKEE----WAKNVEIKGTFCVENCGKSP 628
Query: 149 MVMIGKDTYEDLTPERLEEIIDA-FSTGQG 177
V+I + T E+++E++ + +G
Sbjct: 629 NVVIDDTIVSEATTEKVKEVLKKHVKSEKG 658
>gi|121535574|ref|ZP_01667381.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1]
gi|121305814|gb|EAX46749.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1]
Length = 78
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+++C T C L G + LI ++ + V C C P V I
Sbjct: 5 VIEICVGTSCYLLGAQDLIRAVE-ELPCEQRSHIE-----LRGVTCLKTCGKGPNVRIDG 58
Query: 155 DTYEDLTPERLEEIIDA 171
+TPERL II
Sbjct: 59 VVLAGMTPERLLTIIQD 75
>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
Length = 629
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V+VC T C+ G E+ + +I ++ + CQG C AP++ +
Sbjct: 27 VVKVCQGTGCLAAGAEETFRAFQEEIARQGVK------AQVIPTGCQGFCQGAPVITVEP 80
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRISSAPAG 195
+T + +I+D G+ ++ PQ +I P
Sbjct: 81 RGWFLHRITAADVPKIVDVVLKRGGELVQHFYRDPQTGKICRRPED 126
>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
16646]
gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
16646]
Length = 625
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS-WEEVE-----CQGACVNAP 148
+ VC T C+ G K+ E + + +K L+ + D E V C G C P
Sbjct: 25 KILVCAGTGCISGGSLKVYEAIKKLLEEKNLYVDIDLYTEDKEGVNVSPSGCHGFCQMGP 84
Query: 149 MVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
+V + Y + E +EI++ + +G+ +
Sbjct: 85 IVRVEPQGYFYVKVKEEDAQEIVEK-TVEKGEPVER 119
>gi|153953065|ref|YP_001393830.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555]
gi|219853716|ref|YP_002470838.1| hypothetical protein CKR_0373 [Clostridium kluyveri NBRC 12016]
gi|146345946|gb|EDK32482.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555]
gi|219567440|dbj|BAH05424.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 102
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
V + H+ VC ++ C + ++ ++ + + G + C
Sbjct: 2 VNPKYHIFVCTSSRVNGKQQGFCFSKESVDIVSEFMEEVESR----DLSGEVMVTNTGCF 57
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
G C P+V++ + Y +T E +EEI+D +G+ ++
Sbjct: 58 GICNRGPIVVVYPEGIWYGGVTAEDVEEIMDKHIE-EGEVVKR 99
>gi|78189218|ref|YP_379556.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
gi|78171417|gb|ABB28513.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
Length = 102
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 91 GTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC + C + LI +++ + + ++ C
Sbjct: 3 KPKHHILVCASFRAQGTPQGICHKKNSLALIPYLESELADRGM-----SDVTVSATGCLN 57
Query: 143 ACVNAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
C P++++ + Y ++ E+++EI+DA G+
Sbjct: 58 LCEKGPVLVVYPENFWYGEIDSEEKIDEILDALEEGE 94
>gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Syntrophobotulus glycolicus DSM 8271]
gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Syntrophobotulus glycolicus DSM 8271]
Length = 650
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V +C T C G +LI++ R ++ + L D + C G C P+++I D
Sbjct: 61 VLICTGTGCASSGSNRLIDLIREELAAQGL----DEHIQVRSTGCHGFCEQGPILIIEPD 116
Query: 156 --TYEDLTPERLEEII 169
Y + P + EI+
Sbjct: 117 KTFYTKVKPSDIPEIV 132
>gi|323309908|gb|EGA63108.1| Thi11p [Saccharomyces cerevisiae FostersO]
Length = 346
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 100 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 150
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 151 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 210
Query: 174 T 174
Sbjct: 211 K 211
>gi|300868038|ref|ZP_07112676.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300333958|emb|CBN57854.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 236
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+A + VC + C RG + + + + L + ++ + C C P
Sbjct: 151 PQAKAKILVCQKSDCQKRGGRAICQALETALSDRGLEDH----VTIQGTGCLKQCKAGPN 206
Query: 150 V--MIGKDTYEDLTPERLEEIIDA 171
+ M K Y + P ++ II+
Sbjct: 207 IILMPDKTRYSRIEPAKIPGIIEK 230
>gi|218671477|ref|ZP_03521147.1| formate dehydrogenase subunit gamma [Rhizobium etli GR56]
Length = 164
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
C G + L E + + DG+++ E V C C A
Sbjct: 1 ACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLKLCAAA 45
>gi|254247083|ref|ZP_04940404.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
gi|124871859|gb|EAY63575.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
Length = 151
Score = 40.8 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 52 QHHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 109
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 110 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 144
>gi|291615275|ref|YP_003525432.1| ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus ES-1]
gi|291585387|gb|ADE13045.1| putative ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus
ES-1]
Length = 103
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C + + ++K+ ++ + C G C P++++ D Y +
Sbjct: 21 CCNNHDAQAARDYVKDKV-KQLGISTEKHQVRINSAGCLGRCELGPVLVVYPDAVWYTYV 79
Query: 161 TPERLEEIIDA-FSTGQ 176
L+EII+ G+
Sbjct: 80 DRSDLDEIIEEHIRNGR 96
>gi|159028165|emb|CAO89772.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 151
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEEVECQGACV 145
R C T C ++ + + ++ + L R S G + + C C
Sbjct: 23 QRHLFLCCDQTKPKCCDKEEGLEVWDYLKKRLSELQLDRPSANRPGCIFRTKANCLRVCS 82
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ + Y + E +E II
Sbjct: 83 QGPILLVYPEGVWYGRVNKEAIERIIQE 110
>gi|330818435|ref|YP_004362140.1| Ferredoxin-like protein [Burkholderia gladioli BSR3]
gi|327370828|gb|AEA62184.1| Ferredoxin-like protein [Burkholderia gladioli BSR3]
Length = 106
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
C + + E + + K L G + + C C P++++ +
Sbjct: 21 ADRPSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCEEGPVMVVYPEGTW 78
Query: 157 YEDLTPERLEEIIDA-FSTGQ 176
Y + + ++EI+++ GQ
Sbjct: 79 YTYVDKQDIDEIVESHLRDGQ 99
>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
Length = 597
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
H+ VCG T C +++E ++ L + ++ C G C P+V I
Sbjct: 6 HILVCGGTGCSASASHEIVEELNKELVAHDLTDFAKVVVT----GCFGFCERGPIVKIIP 61
Query: 153 GKDTYEDLTPERLEEIIDA 171
Y + P +EII+
Sbjct: 62 DNTFYTRVKPSDAKEIIEE 80
>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
DSM 14838]
Length = 635
Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ +CG T C + E + + + + D C G C P+V
Sbjct: 41 TEHLQILICGGTGCKASDSHIIAERLQQALERNNIADKVD----IITTGCFGFCEKGPIV 96
Query: 151 MI--GKDTYEDLTPERLEEII-DAFSTGQG 177
I Y + P+ +EI+ + G+
Sbjct: 97 KIIPDNTFYTQVVPDDADEIVREHIIGGRK 126
>gi|323354342|gb|EGA86181.1| Thi13p [Saccharomyces cerevisiae VL3]
Length = 326
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|166368456|ref|YP_001660729.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843]
gi|166090829|dbj|BAG05537.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843]
Length = 151
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEEVECQGACV 145
R C T C ++ + + ++ + L R S G + + C C
Sbjct: 23 QRHLFLCCDQTKPKCCDKEEGLEVWDYLKKRLSELQLDRPSADRPGCIFRTKANCLRVCS 82
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ + Y + E +E II
Sbjct: 83 QGPILLVYPEGVWYGRVNKEAIERIIQE 110
>gi|134096153|ref|YP_001101228.1| putative ferredoxin [Herminiimonas arsenicoxydans]
gi|133740056|emb|CAL63107.1| Putative ferredoxin [Herminiimonas arsenicoxydans]
Length = 106
Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYED 159
C +G + + + K L + G + + C G C P+++I Y
Sbjct: 24 ECCAEKGAHAAQKHLKAR--VKELGLSRSGDVRINQSGCLGRCEEGPVLVIYPQGTWYTY 81
Query: 160 LTPERLEEIIDA 171
+ ++EIID
Sbjct: 82 VDNHDIDEIIDE 93
>gi|77919428|ref|YP_357243.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380]
gi|77545511|gb|ABA89073.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380]
Length = 82
Score = 40.5 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C + C RG ++ +E+ I + L D C+G C P+ I
Sbjct: 5 IVICMGSSCFSRGNDRNLEIIEEFIARHQLDAEVD----LRGSRCEGRCDQGPVFKIDDK 60
Query: 156 TYEDLTPERLEEIIDA 171
+ + EI+
Sbjct: 61 IFSHANQSDIVEILKE 76
>gi|325519252|gb|EGC98702.1| 2Fe-2S ferredoxin [Burkholderia sp. TJI49]
Length = 105
Score = 40.5 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
C + + E + + K L G + + C C P++++ +
Sbjct: 20 ADRPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCEEGPVMVVYPEGTW 77
Query: 157 YEDLTPERLEEIIDA-FSTGQ 176
Y + ++EI+++ GQ
Sbjct: 78 YTYVDKADIDEIVESHLRDGQ 98
>gi|284052702|ref|ZP_06382912.1| hypothetical protein AplaP_14633 [Arthrospira platensis str.
Paraca]
gi|291570234|dbj|BAI92506.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 80
Score = 40.5 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
V + +C C +G K+++ + + G C G+C N P
Sbjct: 2 SVSNSIQIIICHNRTCRKQGAAKVLQAFQAA-NFSVGVITPSG--------CLGSCGNGP 52
Query: 149 MVMIGKD--TYEDLTPERLEEI 168
MV++ + Y+ +TPE++ I
Sbjct: 53 MVLVLPEQVWYDHVTPEQVPSI 74
>gi|259149041|emb|CAY82282.1| Thi12p [Saccharomyces cerevisiae EC1118]
Length = 340
Score = 40.5 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|323303277|gb|EGA57073.1| Thi11p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|6319957|ref|NP_010037.1| Thi13p [Saccharomyces cerevisiae S288c]
gi|51316590|sp|Q07748|THI13_YEAST RecName: Full=Pyrimidine precursor biosynthesis enzyme THI13
gi|1431416|emb|CAA98824.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151941765|gb|EDN60121.1| thiamine metabolism-related protein [Saccharomyces cerevisiae
YJM789]
gi|151945223|gb|EDN63474.1| thiamine metabolism-related protein [Saccharomyces cerevisiae
YJM789]
gi|190405231|gb|EDV08498.1| pyrimidine precursor biosynthesis enzyme THI13 [Saccharomyces
cerevisiae RM11-1a]
gi|190409294|gb|EDV12559.1| pyrimidine precursor biosynthesis enzyme THI13 [Saccharomyces
cerevisiae RM11-1a]
gi|285810799|tpg|DAA11623.1| TPA: Thi13p [Saccharomyces cerevisiae S288c]
gi|323330962|gb|EGA72426.1| Thi11p [Saccharomyces cerevisiae AWRI796]
gi|323332923|gb|EGA74325.1| Thi13p [Saccharomyces cerevisiae AWRI796]
gi|323350099|gb|EGA84260.1| Thi11p [Saccharomyces cerevisiae VL3]
Length = 340
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|194336996|ref|YP_002018790.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
gi|194309473|gb|ACF44173.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
Length = 102
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 91 GTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC + C + LI +++ + + ++ C
Sbjct: 3 KPKHHILVCASFRAQGTPQGICHKKESLSLIPYIESELSDRGMT-----DVTVSATGCLN 57
Query: 143 ACVNAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
C P++++ + Y ++ E+++EI+DA G+
Sbjct: 58 LCEKGPVLVVYPENFWYGEVDGEEKIDEILDALEEGE 94
>gi|116071090|ref|ZP_01468359.1| putative ferredoxin like protein [Synechococcus sp. BL107]
gi|116066495|gb|EAU72252.1| putative ferredoxin like protein [Synechococcus sp. BL107]
Length = 119
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 93 RAHVQVCGTTP----CMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACV 145
H+ +C T C + + ++ + +G + +V+C C
Sbjct: 7 SHHLLLCATPSKAKCCDPVKGAATWDALKQGVKRLGLEA-TSRPEGMVLRSKVDCLRICD 65
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+++I D Y ++TP+R+E I+
Sbjct: 66 RGPVLLIWPDGTWYGEVTPDRIERILTE 93
>gi|78184265|ref|YP_376700.1| putative ferredoxin like protein [Synechococcus sp. CC9902]
gi|78168559|gb|ABB25656.1| putative ferredoxin like protein [Synechococcus sp. CC9902]
Length = 119
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 93 RAHVQVCGTTP----CMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACV 145
H+ +C T C + + ++ + +G + +V+C C
Sbjct: 7 SHHLLLCATPSKAKCCDPAKGAATWDALKQGVKRLGLEAA-SRPEGMVLRSKVDCLRICD 65
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+++I D Y ++TP+R+E I+
Sbjct: 66 RGPVLLIWPDGTWYGEVTPDRIERILTE 93
>gi|6323997|ref|NP_014067.1| Thi12p [Saccharomyces cerevisiae S288c]
gi|1171742|sp|P42883|THI12_YEAST RecName: Full=Pyrimidine precursor biosynthesis enzyme THI12
gi|642336|emb|CAA58226.1| N0295 [Saccharomyces cerevisiae]
gi|1302455|emb|CAA96265.1| THI12 [Saccharomyces cerevisiae]
gi|285814337|tpg|DAA10231.1| TPA: Thi12p [Saccharomyces cerevisiae S288c]
Length = 340
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|14318461|ref|NP_116597.1| Thi5p [Saccharomyces cerevisiae S288c]
gi|1174672|sp|P43534|THI5_YEAST RecName: Full=Pyrimidine precursor biosynthesis enzyme THI5
gi|836697|dbj|BAA09183.1| unnamed protein product [Saccharomyces cerevisiae]
gi|854538|emb|CAA88253.1| a thiamine regulated pyrimidine precursor biosynthesis enzyme
[Saccharomyces cerevisiae]
gi|151944915|gb|EDN63170.1| thiamine metabolism-related protein [Saccharomyces cerevisiae
YJM789]
gi|285811837|tpg|DAA12382.1| TPA: Thi5p [Saccharomyces cerevisiae S288c]
Length = 340
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|170734239|ref|YP_001766186.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3]
gi|206559100|ref|YP_002229860.1| putative ferredoxin [Burkholderia cenocepacia J2315]
gi|169817481|gb|ACA92064.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3]
gi|198035137|emb|CAR51011.1| putative ferredoxin [Burkholderia cenocepacia J2315]
Length = 105
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQRDPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|323305754|gb|EGA59493.1| Thi12p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 166 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|299530105|ref|ZP_07043531.1| hypothetical protein CTS44_04996 [Comamonas testosteroni S44]
gi|298721762|gb|EFI62693.1| hypothetical protein CTS44_04996 [Comamonas testosteroni S44]
Length = 276
Score = 40.5 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ HV C C +G L + Q P + + CQ C +
Sbjct: 171 QVPEHQHHVLWCVGPRCAAKGAVALWPQLTRTVQQNP---LLKKQVMLLQTSCQYPCNHG 227
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P+++ + Y + +E ++
Sbjct: 228 PLMIAYPEGVWYGPMDATTIESVL 251
>gi|254442378|ref|ZP_05055854.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium
DG1235]
gi|198256686|gb|EDY80994.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium
DG1235]
Length = 103
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE--EVECQGACVN 146
+ + E C C
Sbjct: 2 NKPEHHLFICGSARASGELQGVCCNKDSVALLSYTQGEVQDRMLSGVEVSMTGCLNMCTR 61
Query: 147 APMVMIGK--DTYEDLTPERLEEIIDAFSTGQ 176
P+V+ YE+ T E ++EI+DA G+
Sbjct: 62 GPVVIDYPSGHYYENATEELIDEILDAIEDGE 93
>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
Length = 626
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
+ VCG C G L E R I + L ++ V C G C P +VM
Sbjct: 37 RLLVCGGLTCGAAGSFSLPEAFRKAIEKAGLEE----QVTVTLVGCLGLCEEGPLALVMP 92
Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQG 177
+ Y L E + I++ F G+
Sbjct: 93 ERVLYCRLKLEDVAAIVEEHFKGGKP 118
>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 620
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
E Y + L V + V+VC T C+ G + + E + + + +S
Sbjct: 7 EDLELYREQLLRRVKPQRWVRVCAGTGCLAGGSQGVYEALVEE--ARRIGLDSPVKFQAR 64
Query: 137 EVECQGACVNAPMVMIG----KDTYEDLTPERLEEIIDAFSTGQ 176
C G C P+V+ G + Y + E EI+ A + +
Sbjct: 65 CSGCHGFCEEGPLVVCGMGDSEVLYRKVRREDALEILLALADDR 108
>gi|193212204|ref|YP_001998157.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
gi|193085681|gb|ACF10957.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
Length = 100
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV--CRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ AHV +C R + + K+ + + G + C
Sbjct: 1 MLIQNESPYLAHVFICTNDRKGERKSCADGDSQLLKAKLKEAVDAKGWKGKVRVSTSGCL 60
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAF 172
G C P VMI + +TP+ ++EI+
Sbjct: 61 GVCGEGPNVMIYPQKLWFSGVTPDDVDEILSTI 93
>gi|195953767|ref|YP_002122057.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933379|gb|ACG58079.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1]
Length = 109
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G + + + Q P T++ C G C P V++ + Y +
Sbjct: 20 SCAEKGSRDVYTAFADALQQDPQLM---MTVAVTPTGCLGPCAMGPTVVVYPEGIWYGGV 76
Query: 161 TPERLEEIIDA-FSTGQG 177
E + EII++ +
Sbjct: 77 KKEDVNEIIESHLKEDKP 94
>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
Length = 597
Score = 40.5 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C G +++IE +I + L + + C G C P++++
Sbjct: 7 HVLVCGGTGCTSSGSQRIIEKLEKEIKAQGLE----DEVGVVKTGCFGLCALGPIMIVYP 62
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
+ Y + E + EI+ + G+
Sbjct: 63 EGSFYSMVQEEDIPEIVSEHLLKGR 87
>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
16795]
gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
16795]
Length = 628
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + + VCG T C +IE + +I + L ++ C G C
Sbjct: 27 HTDAIPDKRDILVCGGTGCTSSESLLIIEKLKEEIKKAGLEDHA----MVHLTGCFGFCA 82
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+V + D Y + P+ EEI+++
Sbjct: 83 MGPIVKVYPDNVFYVHVKPDDAEEIVNS 110
>gi|119713521|gb|ABL97574.1| putative ferredoxin 2fe-2s protein [uncultured marine bacterium
EB0_35D03]
Length = 74
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ G L E C G C N P++++ D Y+ + E ++EI+++ +G+
Sbjct: 9 CRANQSLGKGGLGVSESRCLGRCENGPVLVVYPDNVWYQYIDEEDIDEILESHLESGK 66
>gi|116690914|ref|YP_836537.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424]
gi|116649003|gb|ABK09644.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424]
Length = 105
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|300692698|ref|YP_003753693.1| ferredoxin [Ralstonia solanacearum PSI07]
gi|299079758|emb|CBJ52434.1| putative ferredoxin [Ralstonia solanacearum PSI07]
Length = 108
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C C G + + E + + K L N +G + + C C
Sbjct: 6 QHHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCEL 63
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + E ++EII + G+
Sbjct: 64 GPVLVVYPEAVWYTFVDREDIDEIIQSHLIEGKP 97
>gi|328951489|ref|YP_004368824.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
gi|328451813|gb|AEB12714.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
Length = 105
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNA 147
TRAH+ +C C RG + + + + ++ L G TL E C GAC
Sbjct: 5 YYPTRAHLLLCTGPRCRARGADTVFRYLWDALEREGLAYYKTGGTLRLTESSCLGACCCG 64
Query: 148 PMVMIGK--DTYEDLTPERLEEIIDAFSTGQGDT 179
P+++ Y +T E+ A G+
Sbjct: 65 PILLAYPAGAWYHGVTVPAALEVARALHEGRDLP 98
>gi|189346133|ref|YP_001942662.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
gi|189340280|gb|ACD89683.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
Length = 100
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
AHV VC R E+ + + + + G + C
Sbjct: 1 MAVQKVSPYVAHVFVCTNDRRGARKSCADDNSELVKAALKRVVDEKGWKGNVRVSTSGCM 60
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAF 172
G C P VMI + ++P+ ++ I+ A
Sbjct: 61 GLCATGPNVMIYPQKVLFSGVSPDDVDGIVSAI 93
>gi|78067707|ref|YP_370476.1| ferredoxin-like [Burkholderia sp. 383]
gi|77968452|gb|ABB09832.1| Ferredoxin-like protein [Burkholderia sp. 383]
Length = 105
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCDAQSMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|107023828|ref|YP_622155.1| ferredoxin-like [Burkholderia cenocepacia AU 1054]
gi|105894017|gb|ABF77182.1| ferredoxin-like protein [Burkholderia cenocepacia AU 1054]
Length = 105
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGAWYTYVDQADIDEIVESHLRDGK 98
>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 597
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV +CG T C GC+++ + ++ + N + C G C P+V++
Sbjct: 7 HVLICGGTGCSSSGCQQVQDKFNEELDKH----NLSNEVKLIITGCHGLCELGPIVIVYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQG 177
+ +Y ++ E + EI++ G+
Sbjct: 63 EGTSYFTVSAEDVSEIVEEHLLKGRK 88
>gi|160895832|ref|YP_001561414.1| ferredoxin-like protein [Delftia acidovorans SPH-1]
gi|160361416|gb|ABX33029.1| ferredoxin-like protein [Delftia acidovorans SPH-1]
Length = 124
Score = 40.5 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L G + + C+ + K L G + + C C P+ ++ + Y +
Sbjct: 37 CCALHGAKAGFDHCKKQ--VKQLGLAGKGQVRVNKAGCLDRCAGGPVAVVYPEGTWYTFV 94
Query: 161 TPERLEEIIDA-FSTGQG 177
++EI+++ GQ
Sbjct: 95 DESDIDEIVESHLKNGQP 112
>gi|239817883|ref|YP_002946793.1| ferredoxin-like protein [Variovorax paradoxus S110]
gi|239804460|gb|ACS21527.1| ferredoxin-like protein [Variovorax paradoxus S110]
Length = 117
Score = 40.5 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L + + C+ K K G + + C C P+ ++ + Y +
Sbjct: 30 CCALHNAQAGFDRCKAK--VKEAGLAGPGKVRVNKAGCLDRCAGGPVAVVYPEAVWYTFV 87
Query: 161 TPERLEEIIDA-FSTGQ 176
+ ++EI+D+ GQ
Sbjct: 88 DADDIDEIVDSHLKNGQ 104
>gi|288939936|ref|YP_003442176.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180]
gi|288895308|gb|ADC61144.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180]
Length = 109
Score = 40.5 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
H+ C C + + + + + G + C G CV+
Sbjct: 5 SHHIFFCTNRREDGRQCCAQSNASNMRDYLKRR-AKDEGLSGPSG-VRVNTAGCLGRCVD 62
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQGDTIRPGPQID 187
P +++ D Y + LEEI+ + G+ P
Sbjct: 63 GPTIVVYPDAVWYTYADEQDLEEILSEHLKGGRVVERLRLPDSG 106
>gi|150016878|ref|YP_001309132.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052]
gi|49617542|gb|AAT67466.1| hypothetical 2Fe2S ferredoxin [Clostridium beijerinckii]
gi|149903343|gb|ABR34176.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052]
Length = 102
Score = 40.1 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSD----GTLSWEEVECQGACVN 146
+ H+ VC + C + G +K + ++ K+ QK + D + C G C
Sbjct: 5 KHHIFVCAS--CRVNGMQKGMCYSKDSVKVVQKFMEEVEDRDLINEVMVTNTGCLGVCNK 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
P+V++ + Y ++ E +E I++ G
Sbjct: 63 GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93
>gi|222481341|ref|YP_002567577.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222454717|gb|ACM58980.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 408
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC C G ++E R + + C G C + PMV +
Sbjct: 319 HVAVCTNQTCAADGAPAVLEGLRQ-----AARDSEECDARITRSSCLGRCGDGPMVAVYP 373
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y D+ + + I+ +
Sbjct: 374 DGVWYGDVDGDDADRIVSS 392
>gi|15605694|ref|NP_213071.1| ferredoxin [Aquifex aeolicus VF5]
gi|2982853|gb|AAC06474.1| ferredoxin [Aquifex aeolicus VF5]
Length = 65
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 140 CQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
C AC+ P+V++ D Y + PE ++EI++ G+
Sbjct: 10 CMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEP 50
>gi|323352802|gb|EGA85104.1| Thi13p [Saccharomyces cerevisiae VL3]
Length = 282
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 57 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 107
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 108 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 167
Query: 174 T 174
Sbjct: 168 K 168
>gi|91781626|ref|YP_556832.1| putative ferredoxin [Burkholderia xenovorans LB400]
gi|91685580|gb|ABE28780.1| Putative ferredoxin [Burkholderia xenovorans LB400]
Length = 107
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C +++ E + + K L G + + C C
Sbjct: 6 KYHVFFCLNQREPGAERPSCANCNAQEMQEHAKKR--VKKLGLAGPGQVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P +++ + Y + ++EI+D+ G+
Sbjct: 64 ELGPALVVYPEGVWYTYVDESDIDEIVDSHLVNGK 98
>gi|213029189|ref|ZP_03343636.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 34
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
G C P +MI +DT+ LTPE + E+++ +
Sbjct: 2 AGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 34
>gi|81299707|ref|YP_399915.1| ferredoxin like protein [Synechococcus elongatus PCC 7942]
gi|81168588|gb|ABB56928.1| ferredoxin like protein [Synechococcus elongatus PCC 7942]
Length = 130
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVN 146
R T C + E + ++ + L R G + + C C
Sbjct: 20 DRHLFLCADQTKPLCCDRDRSLESWEYLKRRLRELDLDRPDTGKPLVFRTKANCLRVCQE 79
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQG 177
P++++ + Y +TPE +E I+ + GQ
Sbjct: 80 GPILLVYPEGIWYGRVTPEAIERILQEHLLGGQP 113
>gi|291543752|emb|CBL16861.1| NADH dehydrogenase subunit E [Ruminococcus sp. 18P13]
Length = 79
Score = 40.1 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++VC + C L+G +++E + I QK L + C C N V
Sbjct: 2 KIKVCIGSSCHLKGSRQVVEQLQALIAQKKLE----DQIELAGTFCMNNCQNGVCVSCDD 57
Query: 155 DTYEDLTPERLEE 167
Y LTP+ +++
Sbjct: 58 QIYS-LTPDTVDQ 69
>gi|146309582|ref|YP_001190047.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp]
gi|145577783|gb|ABP87315.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp]
Length = 241
Score = 40.1 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 52 QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK 111
++ W+ + + + V + + Q+ P + +C C +G
Sbjct: 95 EDTWLDGLSALLAHRGAHLPCSDVPPVPAHHAWSQIPPHAQ--RLLLCNGPRCTRKGALG 152
Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK--DTYEDLTPERLEEII 169
L + R ++ + DG + +CQ C P + + Y + ++
Sbjct: 153 LWKTLRQRL-KAAGKLECDGGVHITRSQCQFPCDLGPTASLYPQGEWYGIRDEAAVIRLV 211
Query: 170 DA-FSTGQGDT 179
D G+
Sbjct: 212 DERLVAGRALP 222
>gi|121605052|ref|YP_982381.1| hypothetical protein Pnap_2152 [Polaromonas naphthalenivorans CJ2]
gi|120594021|gb|ABM37460.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
Length = 116
Score = 40.1 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 95 HVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPMVM 151
H+ VC C G + L + +K LH DG + + V C AC P++
Sbjct: 15 HLLVCIGPRCTQDGASQDLFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPVMC 71
Query: 152 IGKD--TYEDLTPERLEEII-DAFSTGQG 177
+ D Y ++T ++ II GQ
Sbjct: 72 VQPDGTWYYNVTSANMDRIIGQHLVGGQP 100
>gi|134297082|ref|YP_001120817.1| ferredoxin-like protein [Burkholderia vietnamiensis G4]
gi|134140239|gb|ABO55982.1| ferredoxin-like protein [Burkholderia vietnamiensis G4]
Length = 105
Score = 40.1 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G+
Sbjct: 64 EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98
>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
Length = 596
Score = 40.1 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ RAH+ +C C+ G E ++ + ++ + E C G C P+
Sbjct: 1 MPERAHILICAGAACISAGEESFKSALERELKEAGIY----DEVKIIETGCFGTCDLGPV 56
Query: 150 VMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
+ I + Y L P+ ++I+ + G+
Sbjct: 57 MAIYPEGTFYIRLKPQDAKDIVHEHLLKGR 86
>gi|303239674|ref|ZP_07326199.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302592845|gb|EFL62568.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 107
Score = 40.1 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 85 FQLSPVGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
L + HV VC ++ C + +I+ +I + + ++
Sbjct: 1 MNLVMRKPKYHVFVCTSSRINGQQKGYCFSKDAVSIIQRFMEEI--EANELTDEVMVT-- 56
Query: 137 EVECQGACVNAPMVMIGKD--TYEDLTPERLEEIID-AFSTGQG 177
C G C + P+V++ + Y+++TP+ + EI++ F G+
Sbjct: 57 NTGCFGICSSGPVVVVYPEGVWYKEVTPDDVSEIVELHFINGKK 100
>gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
putative [Acaryochloris marina MBIC11017]
gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
putative [Acaryochloris marina MBIC11017]
Length = 551
Score = 40.1 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++ C C+ + E +I + L+ + V C G C P+V +
Sbjct: 21 CIRCCTVGGCLSANALAVKEQIEVEIATQDLNPP----MHVRGVGCMGLCSRGPLVRLDP 76
Query: 155 D--TYEDLTPERLEEIIDAF-STGQGDTIRP 182
Y+ +TPE E++ A T Q +
Sbjct: 77 AGILYDQVTPEDAPELVHACHKTLQPHLPKA 107
>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
Length = 626
Score = 40.1 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSD-------GTL 133
+ + R V +C T C+ G + + + + ++ D +
Sbjct: 14 KRALEAQRRQVLICAGTGCIAGGSLNIYDRLKEECQRRGLNVHVGLLREDETPETKSDDI 73
Query: 134 SWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQGDT 179
+ + C G C P++ I D Y + E ++II+ G+
Sbjct: 74 NLKRSGCHGFCEMGPLLQIEPDGILYTHVQVEDCDDIIEQTLLRGKVIP 122
>gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
Length = 575
Score = 40.1 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 79 ATFYTQFQLSPVGTRAH--VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
A+ + + + VCG T C+ +K+I+ + K L +
Sbjct: 16 ASVKVMVRQHRNSEETNKNILVCGGTGCLASDSDKVIKNLGAILKAKGLSE----QVQVI 71
Query: 137 EVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C G C P++ I D Y + P+ +EII+
Sbjct: 72 RTGCFGFCEQGPIIKIEPDNVFYVRVKPKDAKEIIEQ 108
>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
Length = 595
Score = 40.1 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
H+ VCG T C+ ++++ I + + C G C P+V I
Sbjct: 7 HILVCGGTGCLSSQSNEIVDQLIAHIE----EAGMSEEVQVLKTGCFGFCEKGPIVKILP 62
Query: 153 GKDTYEDLTPERLEEII-DAFSTGQGDT 179
Y + PE EEI+ + G+
Sbjct: 63 DNTFYVQVKPEDAEEIVKEHIVKGRKVP 90
>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
Length = 599
Score = 40.1 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
T V +C C+ G E + + + + E C GAC P+++
Sbjct: 4 TATTVLICAGGACISAG----EESVKQALESEIEKYALSEVVRVVETGCMGACSLGPLMV 59
Query: 152 IGKD--TYEDLTPERLEEIIDA 171
I + Y+ LTP+ I++
Sbjct: 60 IYPEGVFYQKLTPQAARRIVEE 81
>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Ruminococcus torques L2-14]
Length = 622
Score = 40.1 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG----TLSWE 136
+ + + + VCG T C+ G +K+ + G + +
Sbjct: 12 WREECKEKRQKENCCILVCGGTGCLAGGSDKIYARLKELTSNMDHVTVKIGEEIAHVGLK 71
Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
C G C P+V I Y + E EEI +
Sbjct: 72 MSGCHGFCEMGPLVRIEPYNYLYLKVKLEDCEEIFEK 108
>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
Length = 595
Score = 40.1 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ R ++ VCG T C +++ +N I + +D + + C G C P+
Sbjct: 1 MAFRNYILVCGGTACESSRSDQIY---QNLIEECKAQGIAD-EVQVVKTGCFGFCEQGPI 56
Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171
V I Y +TPE +E+I
Sbjct: 57 VKILPEDSFYVKVTPEDAKELISE 80
>gi|17548848|ref|NP_522188.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
gi|17431097|emb|CAD17778.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
Length = 109
Score = 40.1 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E N + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFNVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
+++ D Y +L + I+D G
Sbjct: 59 MVVYPDGVWYRNLDAASVRRIVDEHLAGGAPV 90
>gi|299068985|emb|CBJ40233.1| putative ferredoxin protein [Ralstonia solanacearum CMR15]
Length = 109
Score = 40.1 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFKVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
+++ D Y +L + I+D G
Sbjct: 59 MVVYPDGVWYRNLDAASVRRIVDEHLAGGTPV 90
>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
[Dictyoglomus thermophilum H-6-12]
gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
[Dictyoglomus thermophilum H-6-12]
Length = 596
Score = 40.1 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ RAH+ +C C+ G E ++ + ++ + E C G C P+
Sbjct: 1 MPERAHILICAGAACISAGEESFKSALERELKEAGIY----DEVKVIETGCFGTCDLGPV 56
Query: 150 VMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
+ I + Y L P+ ++I+ + G+
Sbjct: 57 MAIYPEGTFYIRLKPQDAKDIVHEHLLKGR 86
>gi|78213488|ref|YP_382267.1| putative ferredoxin like protein [Synechococcus sp. CC9605]
gi|78197947|gb|ABB35712.1| putative ferredoxin like protein [Synechococcus sp. CC9605]
Length = 120
Score = 40.1 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 92 TRAHVQVCGTTPCMLRGC------EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + T ++ ++ + +G + + +C C
Sbjct: 5 SHHLLLCATATKAKCCDSALGAQTWNALKSIVRELDLE-NAARPEGIVLRSKADCLRVCE 63
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
P++++ D Y D++P+R++ II+ GQ
Sbjct: 64 RGPILLVWPDGIWYSDVSPDRVKRIIEQHIIGQQPV 99
>gi|46395074|gb|AAS91671.1| 2Fe2S ferredoxin [Clostridium beijerinckii]
Length = 102
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCR------NKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ H+ VC + C + G +K + + K ++ R+ + C G C
Sbjct: 5 KHHIFVCAS--CRVNGMQKGMCYSKDSVKVVQKFMEEVEERDLINEVMVTNTGCLGVCNK 62
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDAFSTG 175
P+V++ + Y ++ E +E I++ G
Sbjct: 63 GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93
>gi|282900705|ref|ZP_06308647.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
gi|281194505|gb|EFA69460.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
Length = 188
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
A + VC + C+ G + L+ + + L + E CQ AC AP
Sbjct: 101 SKENIAKIMVCQKSACLKHGGKSLLANLEKTLCDRGLLDK----VKIEHTNCQKACRTAP 156
Query: 149 M--VMIGKDTYEDLTPERLEEIID 170
+M+G++ Y+ L PE + ++
Sbjct: 157 NCILMLGEEQYKKLEPEAIASLLQ 180
>gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis]
Length = 541
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
++ C C+ + + ++ + +N + V C C P+V
Sbjct: 17 EKPVQIRCCVAAGCLSANS----QAVKERLEETVTAKNLTAKVEVRGVGCMRLCCQGPLV 72
Query: 151 MI----------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
+ K YE +TP+ I+ A G+ T++ G
Sbjct: 73 EVRSQEESQQFPQKKLYEKVTPDDAPSIVTAV-NGEETTVKQG 114
>gi|71907117|ref|YP_284704.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB]
gi|71846738|gb|AAZ46234.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB]
Length = 109
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +GC + + ++ + + C G C P V++ + Y +
Sbjct: 23 SCQEKGCGQTWQAFSDEFTTR---NLWASGFALTNTGCLGPCHLGPSVLVYPEGIMYTGV 79
Query: 161 TPERLEEIIDA 171
PE + IID
Sbjct: 80 KPEDVGTIIDE 90
>gi|297627550|ref|YP_003689313.1| hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923315|emb|CBL57915.1| Hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 263
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
P R H+ VC C +G +++E + ++ + + ++ C C AP
Sbjct: 179 PPPFRRHLLVCCGVRCNAQGSREVVESM-VRTAKELGVVHDEVLIT--RTLCLFPCNQAP 235
Query: 149 MVMIGKD--TYEDLTPERLEEII 169
+V+ D +TP + EI+
Sbjct: 236 VVVSYPDNQWRGGVTPAQAAEIV 258
>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
16795]
gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
16795]
Length = 628
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + + VCG T C ++IE + +I + L ++ C G C
Sbjct: 27 HTDAIPDKRDILVCGGTGCTSSDSLQIIENLKAEIEKAGLSDHA----MVHLTGCFGFCA 82
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQ 176
P+V + D Y + PE EI+ +
Sbjct: 83 MGPIVKVYPDNVFYVHVKPEDAAEIVQSHIANN 115
>gi|90416647|ref|ZP_01224577.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207]
gi|90331400|gb|EAS46636.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207]
Length = 124
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 87 LSPVGTRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
R H+ +C C E + +I ++ + DG + +VEC C
Sbjct: 14 RKIHSYRQHLLICTAGKCAPAEQTSDAWEYLKRRI-RELELLDVDGGVYRSKVECLRICR 72
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+++ D Y TPE +E I+
Sbjct: 73 QGPIMVSYPDGTWYHSCTPEVIERILQE 100
>gi|57234137|ref|YP_181864.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195]
gi|57224585|gb|AAW39642.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195]
Length = 100
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 90 VGTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
H+ VC + C +G L+ N+I + + C
Sbjct: 2 KTPDYHILVCNSFRVNGDPQGICNRKGAADLLGYLENEI------IDRGLNVLVSSTGCL 55
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQ 176
+C + P ++I Y ++ +L+ I+DA GQ
Sbjct: 56 KSCEHGPAMVIYPPGWWYGEVDTAKLDIILDALEDGQ 92
>gi|33863432|ref|NP_894992.1| hypothetical protein PMT1162 [Prochlorococcus marinus str. MIT
9313]
gi|33640881|emb|CAE21337.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 115
Score = 39.7 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 93 RAHVQVCGTT----PCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGACVN 146
H+ +C T C + +I +G + +V+C C +
Sbjct: 6 SHHLLLCATANKAACCSADVGNASWANLKKQIKHHDLENIDRPEGVVLRSKVDCLRICND 65
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDAFSTGQGD----TIRPGPQIDRI 189
P+++I D Y +TPER+E I+ G IR PQ R
Sbjct: 66 GPILLIWPDGIWYGGVTPERIESIVKEHVLGGQPIEAWIIRRTPQQQRH 114
>gi|326333064|ref|ZP_08199315.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1]
gi|325949138|gb|EGD41227.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1]
Length = 223
Score = 39.7 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMIG 153
V +C C +G E++ I D L CQ C AP+ V
Sbjct: 134 VLICRGPRCTAKGSEEVARAV---ILGAMEAGLGDDDLLITHTGCQFPCNQAPVLSVQPD 190
Query: 154 KDTYEDLTPERLEEII-DAFSTGQG 177
Y ++ I+ D G+
Sbjct: 191 DVWYGNVEAAAARVIVRDHLDGGRP 215
>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
sticklandii DSM 519]
gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
sticklandii]
Length = 625
Score = 39.7 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ VCG T CM +KLI+ +I + L + ++ C G C
Sbjct: 26 DNIQNTEYREILVCGGTGCMSSQSQKLIDNLNAEIAKAGLSDKVNAHIT----GCFGFCE 81
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIID 170
P+V + D Y + PE E++
Sbjct: 82 QGPIVKVFPDDVFYVQVAPEDAAELVK 108
>gi|300693525|ref|YP_003749498.1| ferredoxin protein [Ralstonia solanacearum PSI07]
gi|299075562|emb|CBJ34855.1| putative ferredoxin protein [Ralstonia solanacearum PSI07]
Length = 109
Score = 39.7 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
HV +C C G E E + Q + C C P+
Sbjct: 2 RTHHKHVLMCTGPRCTQDGAEA--EALFKVLGQTI-DACEGLRVKRTRTHCFAVCKQGPL 58
Query: 150 VMIGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISSAPA 194
+++ D Y +L + I+D + GQ R + P
Sbjct: 59 MVVYPDGVWYRNLDTASVRRIVDEHLAGGQPVEDRIFHRTGLGDVEPE 106
>gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 551
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
I+ +A ++ + +FY + + +A V C + CM G E +
Sbjct: 31 PQDIKEIAKKHNLGVSTLHGAESFYEFLRPAHREKKAFV--CNGSACMCAG---TQEKLK 85
Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII--DAFSTG 175
+ + +K C G C + Y E++++I+ +
Sbjct: 86 DTLKEKLGDDKVGEMF------CLGHCYENNAFHYDGENYAGKDIEKIDQILKGEDIKQE 139
Query: 176 Q 176
+
Sbjct: 140 K 140
>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Clostridium cellulolyticum H10]
gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Clostridium cellulolyticum H10]
Length = 597
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VC T C K+I+ + + D + + C G C P+V++
Sbjct: 5 RAHVLVCAGTGCTSSNSLKIIDEMESLLVSN----RLDSEVQIVKTGCFGLCAEGPIVVV 60
Query: 153 GKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + ++EI++ G+
Sbjct: 61 YPEGAMYTRVEISDVKEIVEEHLLKGR 87
>gi|254251301|ref|ZP_04944619.1| Ferredoxin [Burkholderia dolosa AUO158]
gi|124893910|gb|EAY67790.1| Ferredoxin [Burkholderia dolosa AUO158]
Length = 105
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 QHHVFFCLNQRDPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y + ++EI+++ G
Sbjct: 64 EEGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGN 98
>gi|323345998|gb|EGA80295.1| Thi13p [Saccharomyces cerevisiae Lalvin QA23]
Length = 238
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 13 GEFGKIQIDELTKHYGMKPEDYTAV---RCGMNVAKYIIEGKIDAGIGIECMQ------Q 63
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ ++ + L +++ C G C ++ I D + PE++ + + A
Sbjct: 64 VELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIK 123
Query: 174 T 174
Sbjct: 124 K 124
>gi|157363820|ref|YP_001470587.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermotoga lettingae TMO]
gi|157314424|gb|ABV33523.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermotoga lettingae TMO]
Length = 99
Score = 39.7 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++VC + C L+G K+++ + +K G+L C G C + V I
Sbjct: 27 LIRVCMGSSCHLKGSYKIVQKIEQ-LRKKYPEIQLYGSL------CFGRCSDGICVEIDG 79
Query: 155 DTYEDLTPERLEEIIDAFS 173
Y + + +E+II+
Sbjct: 80 KLYTHVDDKNIEKIIEEAK 98
>gi|158335830|ref|YP_001517004.1| ferredoxin, 2Fe-2S [Acaryochloris marina MBIC11017]
gi|158306071|gb|ABW27688.1| ferredoxin, 2Fe-2S, putative [Acaryochloris marina MBIC11017]
Length = 134
Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
R T C + + ++ + L + +D + + C C
Sbjct: 21 AKIQRHIFICADQTVDKCCDKAASIEAWTYLKKRLKELGLDQPTDSCVFRTKANCLRVCQ 80
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+++I D Y TP +E II
Sbjct: 81 QGPIIVIYPDGVWYHSATPPVIERIIQE 108
>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Clostridium thermocellum ATCC 27405]
gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
Length = 597
Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VCG T C K+I +I + + + C G C P++++
Sbjct: 5 RAHVLVCGGTGCTSSNSNKIITELEEQIARNGIQ----NEVKVVRTGCFGLCAEGPIMVV 60
Query: 153 GKD--TYEDLTPERLEEIIDA 171
+ Y + E ++EI++
Sbjct: 61 YPEGAMYTMVKVEDVKEIVEE 81
>gi|56750651|ref|YP_171352.1| ferredoxin-like protein [Synechococcus elongatus PCC 6301]
gi|56685610|dbj|BAD78832.1| ferredoxin like protein [Synechococcus elongatus PCC 6301]
Length = 130
Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVN 146
R T C + E + ++ + L R G + + C C
Sbjct: 20 DRHLFLCADQTKPLRCDRDRSLESWEYLKRRLRELDLDRPDTGKPLVFRTKANCLRVCQE 79
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQG 177
P++++ + Y +TPE +E I+ + GQ
Sbjct: 80 GPILLVYPEGIWYGRVTPEAIERILQEHLLGGQP 113
>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
Length = 624
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGAC 144
+ + VC T C+ G ++ E + D ++ ++ C G C
Sbjct: 22 EKIKILVCSGTGCIASGSLEIYEEMLRLMKKEGLNCSVNLEEEPHDSSIGMKKSGCHGFC 81
Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
P++ I Y + E +EII+ GQ
Sbjct: 82 EMGPLLRIEPWGYLYIKVKVEDCKEIIEETIKKGQ 116
>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
mobilis]
Length = 609
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
V VC C+ + + R+KI + +E CQG C PM+ I
Sbjct: 17 TVLVCCGPGCLANDSPAIAKALRSKI--DEAGLDVKVHPLIKETGCQGLCEKGPMIRIVP 74
Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDT 179
Y ++ +E I++ +G+
Sbjct: 75 DDIAYYKVSLNDVEAIVEKTLRSGEVIP 102
>gi|53803626|ref|YP_114709.1| hypothetical protein MCA2292 [Methylococcus capsulatus str. Bath]
gi|53757387|gb|AAU91678.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 107
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VC C G + + + + + + V C C + P+V I
Sbjct: 7 HLLVCTGPRCTTNGESQALFDSLGEKFRAAGIDQGELRVKRTRVSCFATCKSGPLVCIQP 66
Query: 155 D--TYEDLTPERLEEIIDA 171
D Y D+T L+ II
Sbjct: 67 DGVWYYDVTEANLDRIIRE 85
>gi|296805036|ref|XP_002843345.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238845947|gb|EEQ35609.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 492
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 33/175 (18%)
Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
L+ + P +S S ++ RYP ++ + +I A++ V + +
Sbjct: 152 LSPNDRAPLGRLWSTTSI--FADICGRYPEAKERGKLISTSFTARDLMEIVDAVEDDGLL 209
Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
++Y VL V ++ + ++
Sbjct: 210 RYWGLSYGTVLGA----------TVAAMFPDRIDRIVMDGVVNFHDYYNAYDVELWAD-- 257
Query: 126 HRNSDGTLSWEEVEC---QGACVNAPMVMIGKDTYEDLTPERLE----EIIDAFS 173
+D S +C C A + DLT + LE +++D
Sbjct: 258 ---TDKVFSAFLEQCVESPNECALA---------HPDLTAQDLEASMYKLLDDIK 300
>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
Length = 597
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC C+ C + ++ + + + E C G C P+V+I
Sbjct: 7 HVLVCAGAGCISSDC----KAVQSALIANIQAQGLKDEIKVVETGCMGPCDLGPVVLIFP 62
Query: 155 D--TYEDLTPERLEEII-DAFSTGQ 176
D Y L PE +I+ + G+
Sbjct: 63 DGVFYRKLKPEDTADIVTEHLLKGK 87
>gi|75910163|ref|YP_324459.1| hypothetical protein Ava_3959 [Anabaena variabilis ATCC 29413]
gi|75703888|gb|ABA23564.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 188
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLS-PVGTRAHVQVCGTTPCMLRGCEKLIE 114
++ + ++ ++ F + P A + VC + C+ RG E L+
Sbjct: 62 INIYGTCKLNRYTGTIKLKAYQVIPFTSNPDQCLPSPPPAKIMVCQKSGCVKRGGEGLLS 121
Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIGKDTYEDLTPERLEEIIDAF 172
+ + L ++ E CQ C +AP ++M+GK Y+ + PE + +++ +
Sbjct: 122 ELEKTLCDRGLLDK----VTIEHTGCQKRCSSAPNCVLMLGKKKYKKIHPEAIASLLENY 177
>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
Length = 597
Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
RAHV VC T C K+++ + L + + C G C P+V++
Sbjct: 5 RAHVLVCAGTGCTSSNSLKIMDEMEALLASNGLES----EVKIVKTGCFGLCAEGPIVVV 60
Query: 153 GKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + +EI++ G+
Sbjct: 61 YPEGAMYTRVEVSDAKEIVEEHLLKGR 87
>gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
Length = 645
Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ V+VC T C +G ++++ K+ + +G + C C +P V
Sbjct: 567 EEKRTVKVCLGTSCYTKGSYEILK----KLVDYVKENDMEGKIEVLGTFCVENCGASPNV 622
Query: 151 MIGKDTYEDLTPERLEEIIDAFSTG 175
++ L+ E++++ S
Sbjct: 623 VVDGKI---LSEATFEKVLEELSKN 644
>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
culture clone BF]
Length = 595
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
H+ +C T C+ ++ ++I + L + C G C P++++
Sbjct: 6 HILICRGTACVSSESIEVQRELEDQIKSRGLEE----QVRVVHTGCFGFCARGPVMVVLP 61
Query: 153 GKDTYEDLTPERLEEIIDA 171
Y ++ E + EII++
Sbjct: 62 QGTLYCEVRVEDVGEIIES 80
>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
Length = 624
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPL----HRNSDGTLSWEEVECQGACVNAP--M 149
+ VC T C +G K+ E R + + + + + C G C + P +
Sbjct: 28 IYVCVGTGCAAKGSIKVYEELRRIFKENNVKANLQKLEEKEERVRKTGCCGRCSSGPWVI 87
Query: 150 VMIGKDTYEDLTPERLEEIIDA-FSTGQG 177
VM Y ++ PE ++EI + G+
Sbjct: 88 VMPYGYFYSEVKPEDVKEIYEETILKGRP 116
>gi|303248864|ref|ZP_07335113.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
gi|302489733|gb|EFL49666.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
Length = 80
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
+ + +C + C RG +K + + + L + + C+ C P + I
Sbjct: 2 KHEIVICMGSSCFARGNKKHLLMIEQYLADHGLSES----VVLTGSRCEDQCTTGPNIRI 57
Query: 153 GKDTYEDLTPERLEEII 169
Y ++ ERL E++
Sbjct: 58 DGQLYGEINGERLMELL 74
>gi|124005441|ref|ZP_01690282.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134]
gi|123989263|gb|EAY28841.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134]
Length = 108
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
V VC + C +G + R + C G C
Sbjct: 1 MSNKLNLPPKTVLVCTGSKCGSKGGNNHYKSLRAMT----RSAGKKDEVQIIRTACSGNC 56
Query: 145 VNAPMV--MIGKDTYEDLTPERLEEIIDAF 172
AP+V M Y + +++ ++
Sbjct: 57 KMAPLVGIMPKNKWYGQVNNDKVVKLFGKL 86
>gi|330945791|gb|EGH47199.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. pisi str.
1704B]
Length = 56
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58
Q F+ SE + + Y R +A I L Q++ GWV
Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPD 51
>gi|221069458|ref|ZP_03545563.1| ferredoxin-like protein [Comamonas testosteroni KF-1]
gi|220714481|gb|EED69849.1| ferredoxin-like protein [Comamonas testosteroni KF-1]
Length = 118
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L G + + C+ K K G + + C C P+ ++ + Y +
Sbjct: 31 CCALHGAKAGFDHCKRK--VKEEGLAGKGQVRVNKAGCLDRCAGGPVAVVYPEAVWYTFI 88
Query: 161 TPERLEEIIDA-FSTGQ 176
++EI+++ G+
Sbjct: 89 DDSDIDEIVESHLKNGK 105
>gi|15612930|ref|NP_241233.1| hypothetical protein BH0367 [Bacillus halodurans C-125]
gi|10172980|dbj|BAB04086.1| BH0367 [Bacillus halodurans C-125]
Length = 129
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ T+ HV +C + C G E+L R +I K L D + C G
Sbjct: 1 MATWNLTKTKHHVLICNGSSCNKAGAEQLTRSIRAEIMAKGL----DPIIHTTRTLCNGR 56
Query: 144 CVN-APMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
C + ++ Y++++ E +D+ +G+ + + + P G T L
Sbjct: 57 CQDKCVLITYPSGHWYKEMSSEDAPRFVDSLLSGRRVEEKISHTFNGEAFEPTEG-TVL 114
>gi|310779196|ref|YP_003967529.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926]
gi|309748519|gb|ADO83181.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926]
Length = 102
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 91 GTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC ++ C+ + +I+ +I + + G + C
Sbjct: 3 KPKHHIFVCSSSRINGQQKGYCLQKESVTIIQNFMEEIDDR----DLSGEIMVTNTGCLA 58
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
C P+V++ + Y +TP+ +EEI+D+ G
Sbjct: 59 ICDKGPIVIVYPEGVWYGSVTPDDVEEIMDSHIEGGKPV 97
>gi|296132219|ref|YP_003639466.1| Sucraseferredoxin family protein [Thermincola sp. JR]
gi|296030797|gb|ADG81565.1| Sucraseferredoxin family protein [Thermincola potens JR]
Length = 102
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ H+ VC ++ C + +L+E +I R + C
Sbjct: 2 NKPKYHIFVCTSSRPTGQQKGFCHAKASVELMEAFMEEIE----ERGLGSEVFVTNTGCL 57
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGD 178
G C P+V++ D Y +T + +EEI++ G
Sbjct: 58 GICEKGPIVIVYPDNVWYGAVTVDDVEEIMEEHIEGGRP 96
>gi|325679206|ref|ZP_08158797.1| hypothetical protein CUS_5482 [Ruminococcus albus 8]
gi|324109135|gb|EGC03360.1| hypothetical protein CUS_5482 [Ruminococcus albus 8]
Length = 80
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V VC + C L+G +++E + I + D + C G C V +
Sbjct: 2 KVTVCIGSSCHLKGSRQVVEQLQYLIAK---EDLGDK-VKLGGTFCMGKCQQGVCVTVDD 57
Query: 155 DTYEDLTPERLEEIIDA 171
+ Y ++PE + E +
Sbjct: 58 EFYS-VSPETVGEFFEK 73
>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Desulfotomaculum reducens MI-1]
Length = 600
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ + G C G K++E + +I +D + + V C G
Sbjct: 1 MKNIDNNTPKVVCICAGG--CTSSGSLKILERFQTEI---EQRGLADKIV-VKPVGCHGF 54
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQG 177
C P+V + + Y ++ + ++ + + G
Sbjct: 55 CEQGPIVTVEPEKLFYTRVSENDVPALVVSIAKGSP 90
>gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina]
Length = 536
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V+VC C G + + ++ + + V C G C P+V +
Sbjct: 24 VRVCLAASCQSSGAVPVFDALVAELGDT------KPSCKVKGVGCMGLCSAGPLVAVADR 77
Query: 156 --------TYEDLTPERLEEIIDAF 172
Y D+T + E+I+ +
Sbjct: 78 EADLQGSVLYRDVTADDAEDIVASI 102
>gi|212640009|ref|YP_002316529.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
gi|212561489|gb|ACJ34544.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
Length = 123
Score = 39.3 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ GT+ HV +C CM +G E++ + R++I + LH + + C G
Sbjct: 4 MATWNLQGTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHTH----VHTTRTRCNGR 59
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
C +A +V++ + Y + + +I+ G+
Sbjct: 60 CEDACVVIVYPEGIWYRTIDEQVGRDIVRKHVKDGE 95
>gi|186474979|ref|YP_001856449.1| putative ferredoxin [Burkholderia phymatum STM815]
gi|184191438|gb|ACC69403.1| putative ferredoxin [Burkholderia phymatum STM815]
Length = 107
Score = 39.3 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C +++ E + + K L G + + C C
Sbjct: 6 KHHVFFCLNQREPGASRPSCANCNAQEMQEYAKKR--VKQLGLAGPGQVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P +++ + Y + ++EI+++ + G+
Sbjct: 64 EEGPTIVVYPEGVWYTYIDKTDIDEIVESHLANGK 98
>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
17393]
gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
17393]
Length = 635
Score = 39.3 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ +CG T C + E + + + + D C G C P+V
Sbjct: 41 TEHLQILICGGTGCKASDSHIIAERLQQALERNNIANKVD----VITTGCFGFCEKGPIV 96
Query: 151 MI--GKDTYEDLTPERLEEII-DAFSTGQG 177
I Y + P+ +E++ + G+
Sbjct: 97 KIIPDNTFYTQVVPDDADEVVREHIIGGRK 126
>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
Length = 629
Score = 39.3 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSP-VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR- 127
M I E Q ++ V +C T C+ G + + + + P
Sbjct: 2 MKKIENREALGQIRQTSREQMNKSKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEV 61
Query: 128 -------NSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEI 168
+ DG + ++ C G C P++ I Y + E EEI
Sbjct: 62 HFGPEIAHGDGEIGIKKSGCHGFCEMGPLMRIEPQGILYTKVKLEDCEEI 111
>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
Length = 629
Score = 39.3 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSP-VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR- 127
M I E Q ++ V +C T C+ G + + + + P
Sbjct: 2 MKKIENREALGQIRQTSREQMNKSKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEV 61
Query: 128 -------NSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEI 168
+ DG + ++ C G C P++ I Y + E EEI
Sbjct: 62 HFGPEIAHGDGEIGIKKSGCHGFCEMGPLMRIEPQGILYTKVKLEDCEEI 111
>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
Length = 597
Score = 39.3 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ + + VC T CM K+++ + + +K + + + C G C P+
Sbjct: 1 MDYKNTILVCAGTGCMSSSSLKILKRLEDLMAEKGILEQTK----IVKTGCFGLCSVGPI 56
Query: 150 VMIGKD--TYEDLTPERLEEII-DAFSTGQ 176
V++ + Y + E + I+ + G+
Sbjct: 57 VIVYPEGAFYAHVQEEDADRIVNEHLIGGK 86
>gi|307611585|emb|CBX01267.1| hypothetical protein LPW_29651 [Legionella pneumophila 130b]
Length = 105
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G E+ + ++K+ + G + + C G C + P ++I + Y
Sbjct: 22 CCANSGGEEFFDFMKSKLL--EFDLHGPGKIRVSKSGCLGRCSSGPCIVIYPEGVWYTYS 79
Query: 161 TPERLEEIID-AFSTGQGDTI 180
+ E +E+II G+
Sbjct: 80 SFEDIEQIIKYHLIDGKIVAP 100
>gi|260219751|emb|CBA26595.1| Ferredoxin, 2Fe-2S [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 116
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C ++ + C+ K + G + + C C P+ ++ + Y +
Sbjct: 29 CCAHHNAQEGFDRCKQL--VKEAGLSGPGQVRVNKAGCLDRCAAGPVAVVYPEAVWYTFV 86
Query: 161 TPERLEEIIDA-FSTGQ 176
+ +EEI+++ G+
Sbjct: 87 DAQDIEEIVESHLKNGK 103
>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
195]
gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
195]
Length = 640
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC T C G KL++ R ++ ++ L + D +E C G C +V+I
Sbjct: 27 CITVCCGTGCRALGSVKLVDAFRAELAKQGLESSVD----IKETGCHGFCEKGSVVVIYP 82
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
Y + PE +++ TG+
Sbjct: 83 QNICYFHVKPEDAADVVAKTIKTGE 107
>gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
Length = 574
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
S G R ++ VCG T C+ +K+++ + + + C G C
Sbjct: 24 HRSAPGPRMNIMVCGGTGCLSSDSDKVVKNLELILKARGYA----DEVKVVRTGCFGFCE 79
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+V I D Y ++P+ ++I+D
Sbjct: 80 QGPIVKIEPDNVFYVRVSPKDAKDIVDE 107
>gi|75910726|ref|YP_325022.1| hypothetical protein Ava_4529 [Anabaena variabilis ATCC 29413]
gi|75704451|gb|ABA24127.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 219
Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 52 QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK 111
+ G V+ A V+A + + A T+ P +A + VC + CM RG +
Sbjct: 74 KTGKVTLKAEAVMAARTETSPAVKQLPAMENTKP--KPDKAKATILVCQKSDCMKRGGKA 131
Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VMIGKDTYEDLTPERLEEIID 170
L + + + L ++ + C C P VM K Y + +++ ++++
Sbjct: 132 LCQALEATLSDRGLE----DQVTIKGTGCMKNCKAGPNLVMPDKTRYTRIQADQVPQLMN 187
Query: 171 A 171
Sbjct: 188 K 188
>gi|188591034|ref|YP_001795634.1| hypothetical protein RALTA_A0242 [Cupriavidus taiwanensis LMG
19424]
gi|170937928|emb|CAP62912.1| conserved hypothetical protein; putative FERREDOXIN 2FE-2S
[Cupriavidus taiwanensis LMG 19424]
Length = 106
Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ HV C C + + E + + ++ +G + + C C
Sbjct: 6 QHHVFFCLNQREAGENCCANYNAKAMQEYAKKR-CKELGIAGGEGRVRINKAGCLNRCEL 64
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + ++EIID+ G+
Sbjct: 65 GPVLVVYPEAIWYTYVDEHDIDEIIDSHLLKGKP 98
>gi|113866330|ref|YP_724819.1| ferredoxin [Ralstonia eutropha H16]
gi|113525106|emb|CAJ91451.1| Ferredoxin [Ralstonia eutropha H16]
Length = 106
Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 93 RAHVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ HV C C + ++ K ++ +G + + C C
Sbjct: 6 QHHVFFCLNQREAGENCCANHNAQAMQEYAKKRCKELGIAGGEGRVRINKAGCLNRCELG 65
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
P++++ + Y + ++EIID+ G+
Sbjct: 66 PVLVVYPEAIWYTFVDEHDIDEIIDSHLMKGKP 98
>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 628
Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V +CG T C + E + + + + C G C P+V+I +
Sbjct: 38 VMICGGTGCTSSDSMFIAEAFEQAVASQGIQDK----IEIVRTGCFGLCELGPVVIIYPE 93
Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
Y + + + EI+D G+
Sbjct: 94 EVFYNRVKVKDVAEIVDKHLLQGK 117
>gi|315187126|gb|EFU20883.1| hypothetical protein SpithDRAFT_0491 [Spirochaeta thermophila DSM
6578]
Length = 91
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV-----N 146
++ + VC T C + G L+ R+ + + WE C C
Sbjct: 2 SKIRITVCVGTACYVMGGADLL-ALRDALPPEWAPHLE-----WEGTPCLNHCREFGTER 55
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP V++ + +TPERL+ I G
Sbjct: 56 APFVLVDGNLLAGVTPERLKAEIARLIAG 84
>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
Length = 597
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V +CG T C G K+ + + +I + L + C G C P++++ +
Sbjct: 6 VLICGGTGCTSSGSVKIAKRLQEEIDKNGLT----DEVMVVRTGCFGLCALGPIMIVYPE 61
Query: 156 --TYEDLTPERLEEII-DAFSTGQ 176
Y + E + EI+ + G+
Sbjct: 62 GTFYSMVKEEDIAEIVSEHLLKGR 85
>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 320
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC T C+ + + E R+KIH + +++ + C G C P+V I
Sbjct: 6 KIYVCCGTGCIAKNSMSIFEEFRDKIH--EMEIDAEVSAKLTSSVCSGICDKGPVVKIYP 63
Query: 155 D-TYEDLTPERLEEIID 170
+ TY + + +EEII
Sbjct: 64 NITYYGVKIKDVEEIIQ 80
>gi|295675326|ref|YP_003603850.1| putative ferredoxin [Burkholderia sp. CCGE1002]
gi|295435169|gb|ADG14339.1| putative ferredoxin [Burkholderia sp. CCGE1002]
Length = 107
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ HV C C + + E + + K L G + + C C
Sbjct: 6 KHHVFFCLNQRDPGAERPSCANCNAQAMQEYAKKR--VKQLGLAGPGQVRINKAGCLDRC 63
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P +++ + Y + ++EI+++ G+
Sbjct: 64 ELGPALVVYPEAVWYTYVDESDIDEIVESHLVNGK 98
>gi|264676433|ref|YP_003276339.1| ferredoxin [Comamonas testosteroni CNB-2]
gi|262206945|gb|ACY31043.1| ferredoxin-like protein [Comamonas testosteroni CNB-2]
Length = 118
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L G + + C+ K K G + + C C P+ ++ + Y +
Sbjct: 31 CCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNKAGCLDRCAGGPVAVVYPEAVWYTFI 88
Query: 161 TPERLEEIIDA-FSTGQ 176
++EI+++ G+
Sbjct: 89 DDSDIDEIVESHLKNGK 105
>gi|158334978|ref|YP_001516150.1| hypothetical protein AM1_1815 [Acaryochloris marina MBIC11017]
gi|158305219|gb|ABW26836.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 186
Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
+++C + C RG K++ + D + + + C G C P +V+
Sbjct: 110 KIRICQKSSCRKRGSRKVLTALNTALQTSGR----DKEIQLQPMGCVGKCKAGPNLVVLP 165
Query: 153 GKDTYEDLTPERLEEIIDA 171
K Y + P+ + I+
Sbjct: 166 DKTRYTRVKPKNITHILQQ 184
>gi|270158044|ref|ZP_06186701.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968]
gi|289163688|ref|YP_003453826.1| ferredoxin 2fe-2s protein [Legionella longbeachae NSW150]
gi|269990069|gb|EEZ96323.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968]
gi|288856861|emb|CBJ10672.1| putative ferredoxin 2fe-2s protein [Legionella longbeachae NSW150]
Length = 105
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G E+ + ++++ L + G + + C G C + P ++I + Y
Sbjct: 21 CCANSGGEEFFDYIKSRLL--ELEMHGPGKVRISKTGCLGRCSSGPCIVIYPEGVWYTYS 78
Query: 161 TPERLEEIIDA 171
+ ++EII+
Sbjct: 79 SFADIDEIIEK 89
>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
Length = 595
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
R + +CG T C G EK+ + +I +D + C G C P+
Sbjct: 2 NKIRTQLMLCGGTGCDSTGSEKVRQALVREI---ERQGLAD-EVEIVVTGCNGFCAVGPV 57
Query: 150 VMIGKD--TYEDLTPERLEEIIDA 171
+++ + Y+ + PE E+++
Sbjct: 58 MVVQPEGIFYQKIQPEDAPELVEE 81
>gi|218247247|ref|YP_002372618.1| iron-sulfur cluster-binding protein-like protein [Cyanothece sp.
PCC 8801]
gi|218167725|gb|ACK66462.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
PCC 8801]
Length = 182
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L + + VC + C RG E L + K+ + L + + C C N
Sbjct: 97 LPENTDKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLG----DQVEIKLTGCLKQCKN 152
Query: 147 AP--MVMIGKDTYEDLTPERLEEIIDA 171
P +V+ K Y + P +++++++
Sbjct: 153 GPNVVVLPDKARYSQVHPRQVDKLLEK 179
>gi|307718916|ref|YP_003874448.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM
6192]
gi|306532641|gb|ADN02175.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM
6192]
Length = 91
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV-----N 146
++ + VC T C + G L+ R+ + + WE C C
Sbjct: 2 SKIRITVCVGTACYVMGGADLL-ALRDALPPEWASHLE-----WEGTPCLNHCREFGTER 55
Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTG 175
AP V++ + +TPERL+ I G
Sbjct: 56 APFVLVDGNLLAGVTPERLKAEIARLIAG 84
>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 594
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
+ +CG T CM ++L E + L + L+ C G C P+V M
Sbjct: 5 KIYICGGTGCMSSKSKRLKENIEAILASNHLEDKVEVRLT----GCFGFCEKGPIVKIMP 60
Query: 153 GKDTYEDLTPERLEEIID 170
Y ++ P EI++
Sbjct: 61 DNTFYTEVNPRDAIEIVE 78
>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
Length = 594
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
+ +CG T CM ++L E + L + L+ C G C P+V M
Sbjct: 5 KIYICGGTGCMSSKSKRLKENIEAILASNHLEDKVEVRLT----GCFGFCEKGPIVKIMP 60
Query: 153 GKDTYEDLTPERLEEIID 170
Y ++ P EI++
Sbjct: 61 DNTFYTEVNPRDAIEIVE 78
>gi|257061417|ref|YP_003139305.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802]
gi|256591583|gb|ACV02470.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802]
Length = 182
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L + + VC + C RG E L + K+ + L + + C C N
Sbjct: 97 LPENTDKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLG----DQVEIKLTGCLKQCKN 152
Query: 147 AP--MVMIGKDTYEDLTPERLEEIIDA 171
P +V+ K Y + P +++++++
Sbjct: 153 GPNVVVLPDKARYSQVHPRQVDKLLEK 179
>gi|167950510|ref|ZP_02537584.1| Ferredoxin-like protein [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 110
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
R H+ C C + ++ + L G + C C +
Sbjct: 5 RHHLFFCTNQRDDGHPCCGRFNAAGQCGYLKQRVKELELELAGPGGVRVNIAGCLDRCEH 64
Query: 147 APMVMIGKD--TYEDLTPERLEEIID-AFSTGQ 176
P+++I + Y + + L+EI+ G+
Sbjct: 65 GPVLVIYPEAVWYTYVDRDDLDEILQRHLIDGE 97
>gi|167626932|ref|YP_001677432.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|241667508|ref|ZP_04755086.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254876054|ref|ZP_05248764.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|167596933|gb|ABZ86931.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|254842075|gb|EET20489.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 118
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ C C K E + ++ + L + +G + + C C
Sbjct: 15 DNIEKHIFLCCDQERQKCCAGDVSLKSWEYLKKRL--QELKLSQNGHIYRSKTYCLRVCQ 72
Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDA-FSTGQ 176
N P +V Y TPE LE+II G+
Sbjct: 73 NGPIAVVQPDNVWYHSCTPEVLEKIIQKHLIGGK 106
>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
aciditrophicus SB]
gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
aciditrophicus SB]
Length = 642
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ + +C + C+ G ++I + +I ++ L D + C G C
Sbjct: 20 RRDPDKPCISICAGSGCVASGALEVIAAFKAEIEKQGLAATVD----TKGTGCPGFCERG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P+V+I + Y + PE + EII
Sbjct: 76 PVVVIYPEEICYLQVMPEDVPEIISQ 101
>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Spirochaeta smaragdinae DSM 11293]
gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Spirochaeta smaragdinae DSM 11293]
Length = 595
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ ++ VCG T C +++ +N I + D T+ + C G C P+
Sbjct: 1 MAFTNYILVCGGTGCESSKSDQI---FKNLIAECEAQGLKD-TVQVVKTGCFGFCEQGPI 56
Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171
V I Y ++PE +E+I
Sbjct: 57 VKILPEDSFYVRVSPEDAKELISE 80
>gi|86609166|ref|YP_477928.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557708|gb|ABD02665.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 149
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 94 AHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--ECQGACVNA- 147
T C + + +++I + L S G+L C AC A
Sbjct: 35 HLFLCADQTKPKCCEKAVGLEAWDYLKSRIKELNLEIGSGGSLRVHRTKANCLRACDYAV 94
Query: 148 --PMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
P++++ G Y +TPE +EEI+ G +
Sbjct: 95 PGPVLLVYPGGFWYHSVTPEVVEEILQKHILGGIPVVE 132
>gi|224368088|ref|YP_002602251.1| Thx [Desulfobacterium autotrophicum HRM2]
gi|223690804|gb|ACN14087.1| Thx [Desulfobacterium autotrophicum HRM2]
Length = 108
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ H+ VC + C + + N+I + L C
Sbjct: 2 EKPKHHILVCASFRPSGEPKGKCHRKNSMDFLPYIENEIIDRGLEGVI-----VSSTCCL 56
Query: 142 GACVNAPMVMIGKD--TYEDLTPER-LEEIIDAFSTG 175
C P+++I + Y ++T E ++EI+DA G
Sbjct: 57 KLCDEGPILVIYPENIWYGNVTSEDAIDEILDALEDG 93
>gi|254416932|ref|ZP_05030680.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
7420]
gi|196176296|gb|EDX71312.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
7420]
Length = 207
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+ Q SP T+A V VC + C RG K+ +V N + + N D ++ ++
Sbjct: 96 QYEKLLQPSPQKTKASVMVCKKSSCRKRGAAKVHQVMNNTLRDR----NLDDQVAIKDTG 151
Query: 140 CQGACVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
C C P + M K Y + PE + ++D + Q
Sbjct: 152 CMKQCKKGPCMVVMPDKARYNKVAPEDVPTLVDKHFGSKLKPEANVSQR 200
>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
bemidjiensis Bem]
gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
[Geobacter bemidjiensis Bem]
Length = 636
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 70 MAYIRV-LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M I+ E+ F + + +C + C G EK+ + ++ L
Sbjct: 1 MPRIKSPAELEAFRKAILAKRDDKKPCITLCSGSACHATGSEKVADAILAELESHGLKDQ 60
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEII 169
D C G C P+V++ + +Y + PE + EI+
Sbjct: 61 VD----IRRTGCHGFCEQGPIVVVYPEGISYLKVKPEDVCEIV 99
>gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
14796]
gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
14796]
Length = 537
Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H VC T C+ G ++I + + + E C G+C P +++
Sbjct: 7 HALVCAGTQCLAAGGNSFKNALEDEIKKH----DLTNEVIVVETGCMGSCQLGPRMVVYP 62
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y L PE +EI++
Sbjct: 63 EGIMYTKLKPEDGKEIVEE 81
>gi|317132513|ref|YP_004091827.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3]
gi|315470492|gb|ADU27096.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3]
Length = 103
Score = 38.9 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + HV VC + C G ++ + I + D ++ C
Sbjct: 3 MDLKHHVFVCTSCRQNGTQKGKCFANGANDVVMKFQEVIDDE--DIRDDVMVT--NCGCF 58
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEII 169
G C N +V + D Y+ +T + +EEI+
Sbjct: 59 GLCDNGVVVAVYPDGVFYKHVTVDDVEEIV 88
>gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
Length = 533
Score = 38.9 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ T+ ++ C C+ E + + I L + V C C
Sbjct: 12 KSREKQTKIRIRCCSAAGCLSSEGETVKKNLTTAIAAAGLEEK----VEVCGVGCMKFCG 67
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDAFST 174
P+V + YE +TP+++ +I+
Sbjct: 68 RGPLVAVDDRNQLYEFVTPDQVGDIVKKLQK 98
>gi|119356570|ref|YP_911214.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
gi|119353919|gb|ABL64790.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
Length = 102
Score = 38.9 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVE---CQGACV 145
+ H+ VCG+ +G + I + + P + D +S V C C
Sbjct: 3 KPKHHIFVCGSF--RAQGTPQGICHKKESLSLIPYFESELSDRGMSDVAVSATGCLNICE 60
Query: 146 NAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
P+V+I + Y ++ E+++EI+DA G+
Sbjct: 61 KGPVVVIYPENFWYGEVDSEEKVDEILDALEEGE 94
>gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
proteobacterium NaphS2]
gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
proteobacterium NaphS2]
Length = 540
Score = 38.9 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
VC T C G E+++ + +I + T+ ++ C G C P+V+I +
Sbjct: 8 LVCLGTGCQSGGAEEVLSSLKEEID----RLSLGETVQVKQTGCHGFCQRGPLVVIEPEG 63
Query: 156 -TYEDLTPERLEEIIDAFSTGQGDT 179
Y ++ + + EI + G+
Sbjct: 64 IFYSKVSLDDVSEIAKSLLPGEPPV 88
>gi|218295408|ref|ZP_03496221.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus
aquaticus Y51MC23]
gi|218244040|gb|EED10566.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus
aquaticus Y51MC23]
Length = 367
Score = 38.9 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
P G H+ +C C RG L+ + + C G
Sbjct: 268 APGRHPHGPFTHLLLCTGEDCRERGALGLLRRLEEDLRDLGP------WVQLTPTPCLGR 321
Query: 144 CVNAPMVMIGKD--TYEDLTPERL 165
C P+++ + Y L+PE
Sbjct: 322 CGKGPVLIAYPEGVVYGGLSPEDA 345
>gi|325972703|ref|YP_004248894.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy]
gi|324027941|gb|ADY14700.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy]
Length = 86
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V++C + C RG + ++ + + +D + C G C P + IG
Sbjct: 5 VVELCLGSSCFARGNSQTLQALEAYLKE---EGLADRVALVGHL-CLGNCAKGPNLRIGS 60
Query: 155 DTYEDLTPERLEEII 169
+TY L + +I
Sbjct: 61 ETYSGLDTASVLALI 75
>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
Length = 627
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQK----PLHRNSDGTLSWEEVE---CQGACVNA 147
+ VC T C+ G K+ E + I +K + + + V C G C
Sbjct: 26 RILVCAGTGCVANGSLKIYEKLKKMISEKGLLAEVELVKEVSHEGIGVNISGCHGFCQMG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEIID 170
P+V Y + E +EEI++
Sbjct: 86 PLVRFEPSGLLYVKVKEEDVEEIVN 110
>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
Length = 596
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
RAHV VCG T C G +++ ++ + L + E C G C + P+V
Sbjct: 3 HIRAHVLVCGGTGCKANGSKEIQLTFARELQKFGLQ----DEVMVVETGCHGFCEHGPLV 58
Query: 151 MIGKD--TYEDLTPERLEEIIDA 171
++ + Y + PE ++ I++
Sbjct: 59 IVYPEGTFYCSVKPENVKTIVEE 81
>gi|288960155|ref|YP_003450495.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
gi|288912463|dbj|BAI73951.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
Length = 110
Score = 38.9 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +G L + KI +D + C G C P++++ + Y
Sbjct: 28 SCAAKGAHPLWQRLDQKI---QGQGLTD--IGMAMTGCLGFCSAGPLMVVYPEGIWYRPE 82
Query: 161 TPERLEEIIDA 171
TPE ++EI+D+
Sbjct: 83 TPEDIDEIVDS 93
>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Acetohalobium arabaticum DSM 5501]
Length = 600
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VC T C G ++ N + + + G + + C G C P+V+I ++
Sbjct: 7 VLVCSGTSCFSSGGPEIY----NNLLENLEEKGLTGEVKLVQTGCFGFCEKGPIVVIYQE 62
Query: 156 ------TYEDLTPERLEEIIDA 171
Y + PE + I++
Sbjct: 63 DNPGGIFYCQVEPEDAQRIVEE 84
>gi|293376712|ref|ZP_06622935.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325845175|ref|ZP_08168483.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1]
gi|292644669|gb|EFF62756.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325488771|gb|EGC91172.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1]
Length = 122
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
T G V V T + G ++ N+++Q+ L + +
Sbjct: 14 TLKNLQLRDHEGKEVRVVVGMGTCGISAGARPVLNELVNEVNQRHLE-----HVVITQTG 68
Query: 140 CQGACVNAPMV----MIGKDTYEDLTPERLEE-IIDAFSTGQ 176
C G C PM GK TY +TPE++++ +++ G
Sbjct: 69 CIGMCTYEPMFDVFDAFGKTTYVHMTPEKVKKVVLEHLVNGN 110
>gi|281356044|ref|ZP_06242537.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
gi|281317413|gb|EFB01434.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
Length = 86
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C + C RG E+ I V + + + LS CQ C + P V+I
Sbjct: 5 KIVICLGSSCFARGNEENIRVVEAYLAENSYRDEVEVELS--GTLCQARCADGPNVIIDG 62
Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
TY + P + +++ + G
Sbjct: 63 VTYSKVDPGVMLDLL------RKTLPPRG 85
>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
DSM 5476]
gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
DSM 5476]
Length = 628
Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VCG T C EK+I + ++ +K + + C G C P++++ +
Sbjct: 39 VLVCGGTGCTSSNAEKIISTLKEEL-EKQGLTDE---VQVVRTGCFGLCALGPIMIVYPE 94
Query: 156 --TYEDLTPERLEEIIDA-FSTG 175
Y + E + EI++ G
Sbjct: 95 GSFYSMVKVEDIPEIVEQHLKNG 117
>gi|302391320|ref|YP_003827140.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
gi|302203397|gb|ADL12075.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
Length = 118
Score = 38.9 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
+ +L + + +T + G +++ V ++ ++ + ++ +
Sbjct: 13 QAKEEMKLRDNDEEIRINIPMSTCGISAGAREVLNVISEELDRQEID-----NVTLNQRG 67
Query: 140 CQGACVNAPMVMIGKD-----TYEDLTPERLEEIIDA 171
C G C P+V + + TY ++TPE II+
Sbjct: 68 CIGLCHYEPIVEVKESDQEVVTYGNITPEGARRIIEE 104
>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile 630]
gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-66c26]
gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile CIP 107932]
gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-63q42]
gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile ATCC 43255]
gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-76w55]
gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-97b34]
gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-37x79]
gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
[Clostridium difficile QCD-23m63]
gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile CD196]
gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile R20291]
gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile QCD-32g58]
gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
HymB-like [Clostridium difficile]
gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile CD196]
gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
[Clostridium difficile R20291]
gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
Length = 628
Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
R + VC T C +++ N+I + + +S C G C
Sbjct: 29 KENVLRRELLVCCDTGCTSSNSLEIVSELENEIKKSGIQDK----VSVRLTGCFGFCAQG 84
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P+V + D Y + P E+I+ +
Sbjct: 85 PIVKVYPDNVFYVKVEPSDAEKIVQS 110
>gi|126656491|ref|ZP_01727752.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110]
gi|126622177|gb|EAZ92884.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110]
Length = 198
Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
Q + + +CG + C RG KL ++ + + ++ E+ CQ C
Sbjct: 106 PQGKTCPKKGKILLCGKSDCAKRGGRKLHQLLEQTL----CNLGLQDHVTIEKTSCQKRC 161
Query: 145 VNAPM--VMIGKDTYEDLTPERLEEIIDA 171
AP +M GK + P+ + E+++
Sbjct: 162 GKAPNLILMPGKAKHSKADPKNIAELLEE 190
>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
[Pelotomaculum thermopropionicum SI]
gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
[Pelotomaculum thermopropionicum SI]
Length = 650
Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
V VC T C + L + + +I+++ L N + + C G C P+VM+ G
Sbjct: 35 VMVCSGTACTSADSQILRQALQEEIYKRGLEEN----IKLFKTGCFGFCQQGPIVMVHPG 90
Query: 154 KDTYEDLTPERLEEIIDA-FSTGQ 176
Y + PE ++++A G+
Sbjct: 91 GVFYCQVRPEDTGKLVEAHLVNGR 114
>gi|172035462|ref|YP_001801963.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142]
gi|171696916|gb|ACB49897.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142]
Length = 198
Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +CG + C RG KL ++ + + ++ E+ CQ C
Sbjct: 106 PRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTL----CNLGLQDHVTIEKTSCQKRC 161
Query: 145 VNAPM--VMIGKDTYEDLTPERLEEIIDA 171
AP +M GK + P+ + E+++
Sbjct: 162 GKAPNLILMPGKAKHSKANPKNIAELLEE 190
>gi|116748456|ref|YP_845143.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB]
gi|116697520|gb|ABK16708.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB]
Length = 106
Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAP 148
H+ VC + + + + I + G C C P
Sbjct: 2 RKPDHHILVCASFRGTEAKGKCIKKESLQLISYLEEELDDRGINAMVSSTGCLKLCEQGP 61
Query: 149 MVMIGKD--TYEDLTPER-LEEIIDAFSTGQG 177
++++ Y +T E ++EI+DA G+
Sbjct: 62 IMVVYPQGYWYRSVTDENAVDEILDALEEGKP 93
>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Spirochaeta thermophila DSM 6578]
Length = 595
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
V +CG T C +++ + ++ + + + + C G C P+V +
Sbjct: 7 VLICGGTGCESNKSDQVYRNLLGLLEKEGISSD----IQVVKTGCFGFCEQGPIVKVLPE 62
Query: 154 KDTYEDLTPERLEEII-DAFSTGQGDT 179
+ Y + PE EEI+ + G+ T
Sbjct: 63 ESFYVQVKPEDAEEIVKEHLIKGRPVT 89
>gi|323138486|ref|ZP_08073555.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242]
gi|322396282|gb|EFX98814.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242]
Length = 112
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C+ G + L + + K+ +P+ +S C G C P++++ + Y
Sbjct: 30 SCVSAGGKPLWDRLQAKLTAQPIP-----DVSITATGCLGFCRAGPLMVVYPEGVWYTPR 84
Query: 161 TPERLEEIIDA 171
T ++EII +
Sbjct: 85 TEADIDEIIQS 95
>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 622
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
H+ + T + G ++E + + + + +V C G C P V I
Sbjct: 28 HILIGTATCGKVAGAMSVLEAVEATLQRLGIEAD------ITQVGCFGMCYAEPTVDIAL 81
Query: 154 ----KDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ +Y +TPE+ +I+ + G
Sbjct: 82 PGQPRISYGYMTPEKATRVIEDYIAGGDPRP 112
>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
6192]
gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
6192]
Length = 595
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
V +CG T C +++ + ++ + + + + C G C P+V +
Sbjct: 7 VLICGGTGCESNKSDQVYRNLLGLLEKEGISSD----VQVVKTGCFGFCEQGPIVKVLPE 62
Query: 154 KDTYEDLTPERLEEII-DAFSTGQGDT 179
+ Y + PE EEI+ + G+ T
Sbjct: 63 ESFYVQVKPEDAEEIVKEHLIKGRPVT 89
>gi|312880917|ref|ZP_07740717.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
gi|310784208|gb|EFQ24606.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
Length = 99
Score = 38.5 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
G + + C G C AP++ Y +T +L++++
Sbjct: 56 GKVQVAKTSCLGDCAGAPVLEFRGQVYSRMTEGKLKDLLRKAK 98
>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
Length = 636
Score = 38.5 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ + +C + C G EK+ + ++ L D C G C
Sbjct: 20 KRDDKKPCITLCSGSACHATGSEKVADAILAELESHGLKDQVD----IRRTGCHGFCEQG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P+V++ + +Y + PE + EI+
Sbjct: 76 PIVVVYPEGISYLKVKPEDVCEIV 99
>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Ilyobacter polytropus DSM 2926]
gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Ilyobacter polytropus DSM 2926]
Length = 598
Score = 38.5 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 9/96 (9%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ +++ T + G + L + + ++ ++ C G C
Sbjct: 15 YQKSENEKTLIKISMATCGITAGADTLYDFFKEELEREGNASIK-----LVSTGCMGLCH 69
Query: 146 NAPMVMI-----GKDTYEDLTPERLEEIIDAFSTGQ 176
+ P + + + + ++ + E+I+ +
Sbjct: 70 SEPTIEVTIPGQQPEIFGNVDLPKAEKILKDIKYKK 105
>gi|162448515|ref|YP_001610882.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56']
gi|161159097|emb|CAN90402.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56']
Length = 395
Score = 38.5 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 33/175 (18%)
Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA----------YI 73
V+ S YP ++++ P L R+ EG + A + A +
Sbjct: 210 EQVDRFSSTYP--WIRASLAPHLGRSSALEGLIDERARQAFAGEAPLPCDTCMYRTALPG 267
Query: 74 RVLEIATFYTQFQLSPVGTRA---------------HVQVCGTTPCMLRGCEKLIEVCRN 118
E+ HV VCG C+ RG L+E R
Sbjct: 268 LAREVGGLKAMLYSVRHTLTHTQASNHPHAHRSLRKHVLVCGNADCVDRGSLALLESVRR 327
Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
+ C G C P V + D Y + E +++++
Sbjct: 328 L----VKQAGQQQQIRVTRTSCMGRCGEGPTVAVYPDGVWYRGVRDEDAKDLVEE 378
>gi|264678018|ref|YP_003277925.1| hypothetical protein CtCNB1_1883 [Comamonas testosteroni CNB-2]
gi|262208531|gb|ACY32629.1| hypothetical protein CtCNB1_1883 [Comamonas testosteroni CNB-2]
Length = 285
Score = 38.5 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ HV C C +G L + Q P + + CQ C +
Sbjct: 171 QVPEHQHHVLWCVGPRCAAKGAVALWPQLARTVQQNP---LLKKQVMLLQTSCQYPCNHG 227
Query: 148 PMVMIGKD--TYEDLTPERLEEII 169
P+++ + Y + +E ++
Sbjct: 228 PLMIAYPEGVWYGPMDATTIEPVL 251
>gi|266619057|ref|ZP_06111992.1| conserved domain protein [Clostridium hathewayi DSM 13479]
gi|288869440|gb|EFD01739.1| conserved domain protein [Clostridium hathewayi DSM 13479]
Length = 79
Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++I + + + L D S+ C G CVN V +
Sbjct: 2 RVTICIGSACHLKGSREIIAQLQQLVKENHLESKVDLNGSF----CSGNCVNGVCVTVDG 57
Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
+ L PE +E D G+
Sbjct: 58 QLFS-LKPEDTKEFFDKEIKGR 78
>gi|260436757|ref|ZP_05790727.1| ferredoxin [Synechococcus sp. WH 8109]
gi|260414631|gb|EEX07927.1| ferredoxin [Synechococcus sp. WH 8109]
Length = 129
Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 92 TRAHVQVCGTTPCMLRGC------EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ + T ++ +++ + +G + + +C C
Sbjct: 5 SHHLLLCATATKAKCCDSALGAQTWNELKSVVRELNLE-NPERPEGIVLRSKADCLRVCE 63
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDT 179
P++++ + Y +++P+R++ IID GQ
Sbjct: 64 RGPILLVWPEGIWYANVSPDRIKRIIDEHIIGQQPI 99
>gi|124022573|ref|YP_001016880.1| ferredoxin [Prochlorococcus marinus str. MIT 9303]
gi|123962859|gb|ABM77615.1| Ferredoxin [Prochlorococcus marinus str. MIT 9303]
Length = 139
Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 93 RAHVQVCGTT----PCMLRGCEKLIEVCRNKIH--QKPLHRNSDGTLSWEEVECQGACVN 146
H+ +C T C + I +G + +V+C C +
Sbjct: 30 SHHLLLCATPNKAACCSAAVGNASWANLKKLIKQLDLENIDRPEGVVLRSKVDCLRICND 89
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDAFSTGQGD----TIRPGPQIDRI 189
P+++I D Y +TPER+E I+ G IR PQ R
Sbjct: 90 GPILLIWPDGIWYGGVTPERIESIVREHVLGGQPIEAWIIRRTPQQQRH 138
>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
Length = 640
Score = 38.5 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+R + VC T C G KL++ R+++ ++ L D +E C G C
Sbjct: 20 KQSASRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLENQVD----IKETGCHGFCEKG 75
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGGLT 198
+V+I Y + E ++I+ TI+ G ++R + + PA G
Sbjct: 76 SVVVIYPQNICYFHVKSEDAADVIE-------KTIKTGELVERLLYADPATGEK 122
>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
Length = 634
Score = 38.5 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC C+ G +I + ++ L ++ + C G C P+VMI
Sbjct: 27 CISVCAGAGCLASGAADVIAAFKTELEFHNLTT----EVNTKGTGCPGFCERGPIVMIYP 82
Query: 155 D--TYEDLTPERLEEIIDAFSTGQG 177
+ Y + PE + EI+ +
Sbjct: 83 EEICYLQVKPEDVPEIVSHTIKEKK 107
>gi|145590144|ref|YP_001156741.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048550|gb|ABP35177.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 102
Score = 38.5 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 90 VGTRAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ H+ C C L E +N+ K L + G + + C
Sbjct: 1 MSFSHHLFFCLNQRSNGEDCCDRHNAFALFEYAKNR--VKELGLSGPGKIRVNKAGCLDR 58
Query: 144 CVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQG 177
C + P++++ Y + + +EEII + G+
Sbjct: 59 CADGPVMVVYPQGVWYTLVDQDDVEEIIQSHLINGRP 95
>gi|17228092|ref|NP_484640.1| hypothetical protein all0596 [Nostoc sp. PCC 7120]
gi|17129942|dbj|BAB72554.1| all0596 [Nostoc sp. PCC 7120]
Length = 219
Score = 38.5 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
P +A + VC + CM RG + L + + + L ++ + C C
Sbjct: 108 KPEKAKATILVCQKSDCMKRGGKALCQALEATLSDRGLE----DQVTIKGTGCMKNCKAG 163
Query: 148 PM-VMIGKDTYEDLTPERLEEIIDA 171
P VM K Y + +++ ++++
Sbjct: 164 PNLVMPDKTRYTRIQADQVPKLMNK 188
>gi|57864802|gb|AAW56977.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
Length = 198
Score = 38.5 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + + +CG + C RG KL ++ + + ++ E+ CQ C
Sbjct: 106 PRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTL----CNLGLQDHVTIEKTSCQKRC 161
Query: 145 VNAPM--VMIGKDTYEDLTPERLEEIIDA 171
AP +M GK + P+ + E+++
Sbjct: 162 GKAPNLILMPGKAKHSKANPKNIAELLEE 190
>gi|258514318|ref|YP_003190540.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771]
gi|257778023|gb|ACV61917.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771]
Length = 102
Score = 38.5 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLT 161
C + ++ R +I R G + C G C P+V++ + Y +
Sbjct: 24 CHTKAGVDILNNFREEIE----ERGLGGEVFISNTGCFGLCEQGPIVVVYPENVWYGAVV 79
Query: 162 PERLEEIIDAFSTG 175
P+ +EEI+D G
Sbjct: 80 PDDVEEIMDEHIEG 93
>gi|289209468|ref|YP_003461534.1| ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix]
gi|288945099|gb|ADC72798.1| putative ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix]
Length = 101
Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TY 157
C G ++ +++ K + + G + C C P+ ++ + Y
Sbjct: 17 DGNCCEDHGATEMRAYAKDR--AKAMGIHGKGQVRVNTAGCLDRCNEGPVAVVYPEGVWY 74
Query: 158 EDLTPERLEEIIDA-FSTGQ 176
++EI++ G+
Sbjct: 75 TYHDERDIDEILEEHLKNGR 94
>gi|54298699|ref|YP_125068.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris]
gi|148358555|ref|YP_001249762.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby]
gi|53752484|emb|CAH13916.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris]
gi|148280328|gb|ABQ54416.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby]
Length = 105
Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G E+ + ++K+ + G + + C G C + P ++I + Y
Sbjct: 22 CCANSGGEEFFDFMKSKLL--EFDLHGPGKVRVSKSGCLGRCSSGPCIVIYPEGVWYTYS 79
Query: 161 TPERLEEIID-AFSTGQGDTI 180
+ E +E+II G+
Sbjct: 80 SFEDIEQIIKYHLIDGEIVEP 100
>gi|218439826|ref|YP_002378155.1| ferredoxin [Cyanothece sp. PCC 7424]
gi|218172554|gb|ACK71287.1| Ferredoxin-like protein [Cyanothece sp. PCC 7424]
Length = 178
Score = 38.5 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142
R T C + E + ++ + N+ G + + C
Sbjct: 36 KKIERHLFLCSDQTKPKCCPKQEGLDAWEYLKRRLKELNLDRPTENNPGCIFRTKANCLR 95
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C P++++ D Y + TPE +E II
Sbjct: 96 VCTAGPILLVYPDGVWYRNATPEVIERIIQE 126
>gi|54295549|ref|YP_127964.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens]
gi|53755381|emb|CAH16877.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens]
Length = 105
Score = 38.5 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G E+ + ++K+ + G + + C G C + P ++I + Y
Sbjct: 22 CCANSGGEEFFDFMKSKLL--EFDLHGPGKIRVSKSGCLGRCSSGPCIVIYPEGVWYTYS 79
Query: 161 TPERLEEIID-AFSTGQGDTI 180
+ E +E+II G+
Sbjct: 80 SFEDIEQIIRYHLIDGKIVAP 100
>gi|50553002|ref|XP_503911.1| YALI0E13662p [Yarrowia lipolytica]
gi|49649780|emb|CAG79504.1| YALI0E13662p [Yarrowia lipolytica]
Length = 347
Score = 38.5 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
+P F F+EE +N+ S + +S VIP LM Q ++ +++
Sbjct: 163 HRGAVKPKEFEFTEE---KINKNFSNFSAWHQRSKVIPELMEETRQGKCTDEKLVKRLSD 219
>gi|326201390|ref|ZP_08191262.1| ferredoxin [Clostridium papyrosolvens DSM 2782]
gi|325988958|gb|EGD49782.1| ferredoxin [Clostridium papyrosolvens DSM 2782]
Length = 123
Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
Q + V V T + G ++ +I+++ L ++ C G
Sbjct: 16 NQLSVRSNEKGIKVVVAMATCGIAAGARPVMNKFIEEINKRNLE-----NVTVSITGCIG 70
Query: 143 ACVNAPMVMIGKD-----TYEDLTPERLEE-IIDAFSTGQGDT-IRPGPQID 187
C P+V I TY ++TPE+ E +++ G T + G Q
Sbjct: 71 VCKMEPVVEILDKDDKKVTYVNMTPEKAERVVLEHIVNGNVCTDLTIGAQEG 122
>gi|167750543|ref|ZP_02422670.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702]
gi|167656469|gb|EDS00599.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702]
gi|291530238|emb|CBK95823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
70/3]
gi|291557050|emb|CBL34167.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
V10Sc8a]
Length = 82
Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ +C + C L+G K+IE+ ++ I H D ++ C G C + + I +
Sbjct: 4 ISICVGSSCHLKGSYKIIELAKDYIA---NHNIGDK-VNLGAAFCLGRCTDGVTIKIDDE 59
Query: 156 TYEDLTPERLEEIIDA 171
+ ++I D
Sbjct: 60 IICGVNENNFQQIFDE 75
>gi|89902562|ref|YP_525033.1| ferredoxin-like protein [Rhodoferax ferrireducens T118]
gi|89347299|gb|ABD71502.1| Ferredoxin-like [Rhodoferax ferrireducens T118]
Length = 127
Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
E F+ + C ++ + C+ + K
Sbjct: 18 PPKSYYERHVFFCLNERKNGEP----------CCAQYQAQQAFDHCKTQ--VKAAGLAGP 65
Query: 131 GTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
G + + C C P++++ + Y L ++EI+ + GQ
Sbjct: 66 GQVRVNKAGCMDRCAAGPVLVVYPEAVWYTYLDNADIDEIVASHLKNGQ 114
>gi|118496732|ref|YP_897782.1| ferredoxin [Francisella tularensis subsp. novicida U112]
gi|194324039|ref|ZP_03057814.1| hypothetical protein FTE_0407 [Francisella tularensis subsp.
novicida FTE]
gi|208779997|ref|ZP_03247340.1| hypothetical protein FTG_1000 [Francisella novicida FTG]
gi|254372098|ref|ZP_04987591.1| hypothetical protein FTCG_01239 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254375245|ref|ZP_04990725.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548]
gi|118422638|gb|ABK89028.1| ferredoxin [Francisella novicida U112]
gi|151569829|gb|EDN35483.1| hypothetical protein FTCG_01239 [Francisella novicida GA99-3549]
gi|151572963|gb|EDN38617.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548]
gi|194321936|gb|EDX19419.1| hypothetical protein FTE_0407 [Francisella tularensis subsp.
novicida FTE]
gi|208744001|gb|EDZ90302.1| hypothetical protein FTG_1000 [Francisella novicida FTG]
gi|328676187|gb|AEB27057.1| Ferredoxin, 2Fe-2S [Francisella cf. novicida Fx1]
Length = 117
Score = 38.5 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ C C K E + ++ + L + +G + + C C
Sbjct: 15 DNIQKHIFLCCDQERQKCCAGDVSLKAWEYLKKRL--QELGLSQNGHIYRTKTYCLRICQ 72
Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDA 171
N P +V Y TPE LEEII
Sbjct: 73 NGPIAVVHPDNVWYHSCTPEVLEEIIQK 100
>gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
MP104C]
gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
MP104C]
Length = 656
Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-------CQGACVNA 147
VC T C+L G ++ + + ++ + + E + C G C
Sbjct: 28 RFLVCAGTGCVLGGALEVYQEFVRLLKERGCPTSVELLFEGRETDAGAAYSGCHGFCQLG 87
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
P+V Y +T + EII + + + R+ G SL + +
Sbjct: 88 PLVRFEPKGIFYTQVTAADVPEIITT-ALDKNTVVE------RLLYQNPDGSKSLREED 139
>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
Length = 624
Score = 38.5 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP----LHRNSDGTLSWEEVECQG 142
+ VC T C G K+ + I +K + D + + C G
Sbjct: 19 REQRLKDKSIYVCVGTGCTANGSRKVYKKFVEVIRKKGLDVKVETIDDESDVVRKTGCCG 78
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C P+V I + TY + + +EEI++
Sbjct: 79 LCSLGPLVKIMPEGITYSHVRLDDVEEIVEK 109
>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
Length = 618
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
G + + +C + C G + E ++ + L + L+ C
Sbjct: 16 KNLVAQHKDGNKKLISLCSGSGCGAYGTASVYESLVAELKKAGLSDLVEVRLT----GCH 71
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIID-AFSTGQ 176
G C P+++I + Y + P+ + EI++ G+
Sbjct: 72 GFCEKGPIMVIHPEGIFYPQVKPDMIPEIVEMTLKNGE 109
>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
Length = 599
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAPMVMIG 153
V VC T C G ++E + + SD +S + C G C N P+V I
Sbjct: 5 VLVCCGTGCRANGSLLVLEA----LQKAARKHKSDIEVSPLIKSTGCNGFCENGPIVKIE 60
Query: 154 --KDTYEDLTPERLEEIIDA 171
+Y + PE + II
Sbjct: 61 PADISYYKVKPEDADSIIKD 80
>gi|310826465|ref|YP_003958822.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612]
gi|308738199|gb|ADO35859.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612]
Length = 132
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 131 GTLSWEEVECQGACVNAPMVMIGK-----DTYEDLTPERLEEIIDA-FSTGQ 176
++ + C G C P+V + TY +TPE+++ I+D G+
Sbjct: 60 KDVTVAQTGCIGVCRLEPIVEVYNPEGEKVTYVKMTPEKVQRIVDEHLKNGK 111
>gi|50306179|ref|XP_453051.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642184|emb|CAH01902.1| KLLA0C19085p [Kluyveromyces lactis]
Length = 340
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
G + I+ + M + ++ + CM
Sbjct: 115 GEFGKIQIDELTKHYGMKPTDYEAV---RCGMNVAKYIIEGKIDAGVGIECMQ------Q 165
Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
+ +K L +E+ C G C ++ I D + P ++++ ++A
Sbjct: 166 VQLEEYLKEKGRDPKDAKMLRIDELACLGCCCFCTILYIANDKFLAENPVKVKKFLNAIK 225
Query: 174 T 174
Sbjct: 226 K 226
>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
16795]
gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
16795]
Length = 622
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVE---CQGACVN 146
T + +C T C+ G + + + + + +G + EV+ C G C
Sbjct: 22 ATPIRILICAGTGCISGGSQFIYDKMKELVGDNENVEVKFEGHVPHPEVKKSGCHGFCEM 81
Query: 147 APMVMIG--KDTYEDLTPERLEEIIDAFSTGQG 177
P++ I Y + PE EEI + +
Sbjct: 82 GPLMRIEPLNILYVKVQPEDCEEIYNETIKNRK 114
>gi|86157642|ref|YP_464427.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C]
gi|220917843|ref|YP_002493147.1| ferredoxin [Anaeromyxobacter dehalogenans 2CP-1]
gi|85774153|gb|ABC80990.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C]
gi|219955697|gb|ACL66081.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-1]
Length = 112
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV VC C +G E R + + R + C AC
Sbjct: 4 RHHVFVCENHRDPSDPRGACGNKGS----EAIRAALKAEVARRGLKAQVRVNGAGCLDAC 59
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIID 170
P +++ + Y ++P + EI++
Sbjct: 60 AFGPSIVVYPEGVWYGHVSPADVPEIVE 87
>gi|260830832|ref|XP_002610364.1| hypothetical protein BRAFLDRAFT_72434 [Branchiostoma floridae]
gi|229295729|gb|EEN66374.1| hypothetical protein BRAFLDRAFT_72434 [Branchiostoma floridae]
Length = 3018
Score = 38.1 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
+ ++E+ Q +++ A E I +Y S + A+I + ++ A++
Sbjct: 629 KDISEKMLQADEGKITQQLAKETQIENIEKYKYSNKE-AIIARMTDVKKHLYRFPSLAVD 687
Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
+A + V E + H+ V + LR
Sbjct: 688 CLALSSHIEPTTVWETIEQMKNKKTISPNNAHHLTVLTSISAELR 732
>gi|197123053|ref|YP_002135004.1| ferredoxin [Anaeromyxobacter sp. K]
gi|196172902|gb|ACG73875.1| putative ferredoxin [Anaeromyxobacter sp. K]
Length = 112
Score = 38.1 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
R HV VC C +G E R + + R + C AC
Sbjct: 4 RHHVFVCENHRDPSDPRGACGNKGS----EAIRAALKAEVARRGLKAQVRVNSAGCLDAC 59
Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIID 170
P +++ + Y ++P + EI++
Sbjct: 60 AFGPSIVVYPEGVWYGHVSPADVPEIVE 87
>gi|168017648|ref|XP_001761359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687365|gb|EDQ73748.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 629
Score = 38.1 bits (87), Expect = 0.81, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++VC C G ++++ + I LS +C G C +AP V +
Sbjct: 533 KIEVCTVGKCRRGGSQEILAAFQESI-------PESSNLSATSCKCMGKCKSAPNVRVKN 585
Query: 155 -----DTYEDLTPERLEEIID 170
+ ++ E ++ +++
Sbjct: 586 SDGISQLHSHVSAEDVDTLLE 606
>gi|159029412|emb|CAO90788.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 191
Score = 38.1 bits (87), Expect = 0.82, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+A V +C + C G ++ + + + +K L ++ + C C
Sbjct: 96 TPAKAKKATVLICQKSDCWKNGGARVCQRLESSLEEKGLGEA----VNIKLTGCLKQCKK 151
Query: 147 AP--MVMIGKDTYEDLTPERLEEIID 170
P +VM K Y + P+ + +I+
Sbjct: 152 GPNLVVMPDKKHYNQVAPQDVPSLIE 177
>gi|148257146|ref|YP_001241731.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. BTAi1]
gi|146409319|gb|ABQ37825.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. BTAi1]
Length = 120
Score = 38.1 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHV-QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
M+ V E + QL + Q P G + + R
Sbjct: 1 MSETDVAEADDAFELPQLYKYHAFVCLTQRPPGHPRGSCGALGVQPLWDRLTKTIEAQRL 60
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+D ++ C G C PM+++ D Y PE ++EI+++ F G+
Sbjct: 61 TDIGVTA--AGCFGFCSAGPMMVVYPDGIWYRPTKPEDIDEIVESHFKQGK 109
>gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
Length = 630
Score = 38.1 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
E+ + ++ V V T M G K+ + ++I +K L
Sbjct: 4 FELLRAEAKQRIDEKQGTTLVCVGVATCSMASGALKVKDAFISEIQRKELDAR------V 57
Query: 136 EEVECQGACVNAPMVMIGKD-----TYEDLTPERLEEIIDAFSTGQGD 178
EV C G C P+V+I K Y L + +E +++ F
Sbjct: 58 MEVGCMGHCYAEPLVLIKKPGFPALLYGKLDEDLVERLVEDFLANDDP 105
>gi|218439690|ref|YP_002378019.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424]
gi|218172418|gb|ACK71151.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424]
Length = 104
Score = 38.1 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ + V VC + C+++G K++ + + G CQG C
Sbjct: 1 MKSNNPQRCVMVCQHSSCIVQGSAKILLAFQLADLPDDTFVMASG--------CQGQCST 52
Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIR 181
+P V I + Y + + + +I++ GQ T +
Sbjct: 53 SPTVRIIPDETWYYRVQLDDVNKIVEQHLKAGQPVTEK 90
>gi|152993856|ref|YP_001359577.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1]
gi|151425717|dbj|BAF73220.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1]
Length = 124
Score = 38.1 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
C+ + + ++ + + Q + + GT+ + C C P++++ G Y L
Sbjct: 26 SCVSQNDPESQQLFQ-HLAQSLMMKGIIGTVQPIQTGCLNRCQQGPVMLVEPGHTMYVGL 84
Query: 161 TPERLEEIIDA 171
T E+++ IID
Sbjct: 85 TKEKIDRIIDE 95
>gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
Pelagibacter ubique HTCC1062]
Length = 509
Score = 38.1 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
M + +FY + S +A V C + CM G ++ + K+ +K
Sbjct: 1 MGVSTIHGAESFYEFLRPSHREKKAFV--CNGSACMCAGTQEP---LKKKLQEKLGDDKV 55
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
C G C + Y ++++II
Sbjct: 56 GEMF------CLGHCYENNAFHYDGENYAGNDINKIDQIIK 90
>gi|283850224|ref|ZP_06367513.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B]
gi|283574250|gb|EFC22221.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B]
Length = 103
Score = 38.1 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
L V V+ C +G L+ + + D C C
Sbjct: 7 RYLINVCASFRVKGEAKGICHKKGSHNLLGYF------EEGILDRDIDARVVSTGCMKQC 60
Query: 145 VNAP--MVMIGKDTYEDLT-PERLEEIIDAFSTGQ 176
P +VM Y + ++++E++DA G+
Sbjct: 61 EEGPIVVVMPENWWYRGIDSEDKVDELLDALENGE 95
>gi|77551736|gb|ABA94533.1| Glycosyl transferase family 8 protein, expressed [Oryza sativa
Japonica Group]
gi|125577723|gb|EAZ18945.1| hypothetical protein OsJ_34484 [Oryza sativa Japonica Group]
Length = 548
Score = 38.1 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANILDMA 71
++E+A +E ISR PP L Q+Q + S + L +
Sbjct: 91 TDENAAEADERISRSPPGTK-----EKLWMMQDQLIMAKAYLQFASLHGSAHLVRELKLR 145
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ + + ++ P ++ T + K+
Sbjct: 146 IKEIERVISHFSSSSRVPTSALQKIRAMEMTLSKAQRAYPHCSHMTAKL 194
>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
Length = 631
Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VC T C ++ + +I Q N + + + C G C P+V+I
Sbjct: 42 HVLVCAGTGCTSSKSPQIQKKFEEQIEQN----NLNDEVKIVKTGCFGFCEAGPIVVIYP 97
Query: 155 D--TYEDLTPERLEEIIDA 171
+ Y + E +E I+
Sbjct: 98 EGTFYSHIKVEDVERIVKE 116
>gi|301631537|ref|XP_002944854.1| PREDICTED: ferredoxin, 2Fe-2S-like [Xenopus (Silurana) tropicalis]
Length = 113
Score = 37.8 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 84 QFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
+P + H+ C C G ++ E C+ + K L + G + +
Sbjct: 1 MSDTTPPYFQRHIFFCLNERANGEACCAQYGAQQAFEHCKAQ--AKALGLSGPGKVRVNK 58
Query: 138 VECQGACVNAPMVMIGKD--TYEDLTPERLEEII-DAFSTGQ-GDTIRPGPQIDR 188
C C P+ ++ + Y + ++EI+ GQ + +R P++ R
Sbjct: 59 AGCLDRCAAGPVAVVYPEGVWYSYVDTSDIDEIVTTHLRDGQVVERLRTPPELGR 113
>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
Length = 628
Score = 37.8 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--------NSDGTLSWEEVECQ 141
++ V +C T C+ G + + + + P + DG + ++ C
Sbjct: 22 EDSKCRVLICAGTGCLAGGSGDIYKRMCELVEENPDVEVHFGEEIAHGDGEIGIKKSGCH 81
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEI 168
G C P++ I Y + E +EI
Sbjct: 82 GFCEMGPLMRIEPQGILYTKVQLEDCDEI 110
>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
Length = 606
Score = 37.8 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV +CG T C + ++++ + D + C G C P+V++
Sbjct: 7 HVLICGGTGCTSSKS----KEIKHELVNHLVRLGLDKEVQVVMTGCFGLCEAGPIVIVYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + I + G+
Sbjct: 63 EGTFYSKVQVSDAVRIAEEHLLKGR 87
>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
10507]
gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
10507]
Length = 623
Score = 37.8 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEV----CRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
V VC T CM G +K+ + C++ K + L + CQG C
Sbjct: 22 SYTCRVLVCSGTGCMASGAQKIYDEMSLLCKDLEGVKIEMQKDLPHLGVVKTGCQGLCEL 81
Query: 147 APMVMIGKDTYE--DLTPERLEEIIDA 171
P++ I Y+ + PE EI++
Sbjct: 82 GPLMRIEPYNYQYVKVQPEDCREIVEK 108
>gi|220935951|ref|YP_002514850.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7]
gi|219997261|gb|ACL73863.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7]
Length = 101
Score = 37.8 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TY 157
C G ++ + + K L G + C C P+ ++ + Y
Sbjct: 17 DGNCCENYGASQIRAYAKQR--AKELGITGKGGVRVNTAGCLDRCNEGPVAVVYPEGVWY 74
Query: 158 EDLTPERLEEIIDA 171
+ + +EEI+
Sbjct: 75 TYVDEQDVEEILQE 88
>gi|220922132|ref|YP_002497433.1| hypothetical protein Mnod_2147 [Methylobacterium nodulans ORS 2060]
gi|219946738|gb|ACL57130.1| protein of unknown function DUF1636 [Methylobacterium nodulans ORS
2060]
Length = 118
Score = 37.8 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 20/101 (19%)
Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM------IGK 154
T C ++H + + E VEC C P +
Sbjct: 8 CTTCRAESDPPDGPRAGARLHATLAETLAGEGVRVEPVECLSVCKR-PCTVAVSSPGRWT 66
Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
Y DL P I G + R ++AP G
Sbjct: 67 YVYGDLDPASAPAI---LRDG----------LSRYTAAPDG 94
>gi|166368041|ref|YP_001660314.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa
NIES-843]
gi|166090414|dbj|BAG05122.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa
NIES-843]
Length = 184
Score = 37.8 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+A V +C + C G ++ + + + +K L ++ + C C P
Sbjct: 91 AKAKKATVLICQKSDCWKNGGARVCQRLESGLEEKGLGEA----VNIKLTGCLKQCKKGP 146
Query: 149 --MVMIGKDTYEDLTPERLEEIID 170
+VM K Y + P+ + +I+
Sbjct: 147 NLVVMPDKKHYNQVAPQDVPSLIE 170
>gi|328675283|gb|AEB27958.1| Ferredoxin, 2Fe-2S [Francisella cf. novicida 3523]
Length = 117
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ C C K E + ++ L + +G + + C C
Sbjct: 15 NNIQKHIFLCCDQERQKCCAGDISLKAWEYLKKRLL--ELGLSQNGHIYRTKTYCLRICQ 72
Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDA 171
N P +V Y TPE LEEII
Sbjct: 73 NGPIAVVHPDNVWYHSCTPEVLEEIIQK 100
>gi|291521597|emb|CBK79890.1| Ferredoxin [Coprococcus catus GD/7]
Length = 124
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ + H++V G NK+ + ++ D + + C G C
Sbjct: 18 VNMREDDSSNHIRVVVGMA--TCGIASGARPVLNKLAEDVQAKHLDNVI-VTQTGCIGLC 74
Query: 145 VNAPMVMIG-----KDTYEDLTPERLEEIIDA 171
P+V + K TY +TPE+ +E+++
Sbjct: 75 QYEPIVEVYEPGKEKVTYIKMTPEKADEVVEQ 106
>gi|325982320|ref|YP_004294722.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212]
gi|325531839|gb|ADZ26560.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212]
Length = 102
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCR----NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ HV C C K K L + + C C P
Sbjct: 5 QYHVFFCTNQRDGGAKCCNNFCAQELRDYAKQRIKSLRLDGKKRIRINNAGCLDRCNEGP 64
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
+++I + Y + E ++EIID
Sbjct: 65 VIVIYPEETWYTYIDQEDIDEIIDE 89
>gi|125535002|gb|EAY81550.1| hypothetical protein OsI_36716 [Oryza sativa Indica Group]
Length = 548
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVANILDMA 71
++E+A +E ISR PP L Q+Q + S + L +
Sbjct: 91 TDENAAEADERISRSPPGAK-----EKLWMMQDQLIMAKAYLQFASLHGSAHLVRELKLR 145
Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
+ + + ++ P ++ T + K+
Sbjct: 146 IKEIERVISHFSSSSRVPTSALQKIRAMEMTLSKAQRAYPHCSHMTAKL 194
>gi|158421927|ref|YP_001523219.1| ferredoxin [Azorhizobium caulinodans ORS 571]
gi|158328816|dbj|BAF86301.1| ferredoxin [Azorhizobium caulinodans ORS 571]
Length = 117
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G + L E +I + C G C P++++ + Y+
Sbjct: 35 SCGAAGAQPLWERLGKQI-----EATGQRDIVMTATGCMGFCQAGPIMVVYPEGVWYQPR 89
Query: 161 TPERLEEII 169
TPE ++EI+
Sbjct: 90 TPEDVDEIV 98
>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
27021]
Length = 624
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVECQGACVNAP 148
+ +C T C+ G + E + +K D T+ ++ C G C P
Sbjct: 26 ILICAGTGCVAGGSLDIYEEFIKLMKEKEINCEVSLEKEPHDETVGIKKSGCHGFCEMGP 85
Query: 149 MVMIGK--DTYEDLTPERLEEIIDA 171
+V I Y + PE EI++
Sbjct: 86 LVRIEPFGYLYIKVKPEDCAEILEK 110
>gi|239628145|ref|ZP_04671176.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518291|gb|EEQ58157.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 79
Score = 37.8 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++I + + + L D C G C + V +
Sbjct: 2 KVTICIGSACHLKGSREIIAKLQKLVAENGLSDQVD----LNGAFCTGNCDHGVCVTVEG 57
Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
+ Y L PE EE + G+
Sbjct: 58 ELYS-LKPEDTEEFFENEIKGR 78
>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
27725]
gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
27725]
Length = 594
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
+ +CG T C+ +++ + I + + C G C P+V I
Sbjct: 6 KILICGGTGCLSSKSDEIKKNLEKCIAE-----YDIKDIEVVLTGCFGFCEKGPIVKIIP 60
Query: 153 GKDTYEDLTPERLEEIID-AFSTGQG 177
Y ++ PE EEII G+
Sbjct: 61 ENTFYIEVKPEDAEEIIKVDIIEGKK 86
>gi|224373698|ref|YP_002608070.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH]
gi|223589008|gb|ACM92744.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH]
Length = 111
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
C+ G E L + + K+ + + + C C P++M+ G+ Y DL
Sbjct: 25 SCVREGKEDLFQFTQQKMMEMGIDPMVN---WIVPTGCLNRCNFGPVMMVEPGQYMYVDL 81
Query: 161 TPERLEEIIDAFSTGQGDT 179
E++E+I+ G
Sbjct: 82 DKEKIEKILKEHIIGGNPV 100
>gi|119899657|ref|YP_934870.1| ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
gi|119672070|emb|CAL95984.1| probable ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
Length = 108
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +GC ++ + + + + C G C+ P V++ D Y +
Sbjct: 23 SCQQKGCGEVHQAF---LEAFQARNLWN-EFAVTNTGCLGPCMAGPSVLVYPDAVMYGGV 78
Query: 161 TPERLEEIIDA 171
T + IID
Sbjct: 79 TAADVGTIIDE 89
>gi|126331781|ref|XP_001372368.1| PREDICTED: similar to Gamma-aminobutyric acid (GABA) A receptor,
alpha 4 [Monodelphis domestica]
Length = 555
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 122 QKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
++P S G + + C AC+N P K+ E L PE I+D+ G + +
Sbjct: 6 KEPGTTMSSGVSFTLLHFLCLAACLNEPPGDPQKE--EKLRPENFTRILDSLLDGYDNRL 63
Query: 181 RPG 183
RPG
Sbjct: 64 RPG 66
>gi|302037414|ref|YP_003797736.1| sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii]
gi|300605478|emb|CBK41811.1| Sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii]
Length = 393
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 83 TQFQLSPVGTRA-HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
T + A HV VC C RG LI R + + + C
Sbjct: 289 TMPHVHAHRPLAKHVLVCVNADCADRGSVTLIATLRRLLKDAGREVD----IKVTRTLCM 344
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
G C P V + D Y + E++D
Sbjct: 345 GRCGEGPTVAVYPDGIWYRGVQETDARELVDE 376
>gi|188584740|ref|YP_001916285.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349427|gb|ACB83697.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 124
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
V V T + G +++ +++++ L ++ + C G C N
Sbjct: 24 RKTNENMVIVGMGTCGIAAGAREVMNALLEELNKRSL-----KEITVTQTGCIGMCENEV 78
Query: 149 MVMIGKD-----TYEDLTPERLEEII-DAFSTGQ 176
+V + K TY ++TPE + I+ D G+
Sbjct: 79 LVDVKKQGEERITYGNVTPEDIPRIVNDHLINGK 112
>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
Length = 626
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
+ + VCG T C +I +N+I + D C G C P
Sbjct: 30 NKNMKRSILVCGGTGCHASKSLDVISTLKNEIKNAGIENEVD----VISTGCFGFCEKGP 85
Query: 149 MVMI--GKDTYEDLTPERLEEII 169
+V + Y ++T E+ + I+
Sbjct: 86 IVKVVPDNVFYVEVTAEKAKLIV 108
>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
Length = 623
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN- 128
M + E+ F+ S + V VCG T C+ G ++ + + I ++ L
Sbjct: 1 MRINSIEELINTSKIFKNSLEQQQKQVLVCGGTGCVAGGALEVYDEIKRLIEERGLLAQV 60
Query: 129 ----SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIID-AFSTGQG 177
+ + ++ C G C P+V I D Y + E +EI++ G+
Sbjct: 61 ELYEEERGIGVKKSGCHGFCEAGPLVRIEPDQFLYLKVKREDCKEIVETTLIDGKP 116
>gi|328855830|gb|EGG04954.1| hypothetical protein MELLADRAFT_108006 [Melampsora larici-populina
98AG31]
Length = 2039
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 29/134 (21%), Gaps = 6/134 (4%)
Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
+ + V + + E + +
Sbjct: 108 IPITTLPKVGPSFSLVKAQGEEAVEYGQ--NRRGKPCGHVFEKGEGVYHCSDCGLDTTCA 165
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV---MIGKDTYEDLTPERLEEIIDAF 172
+K H D S C I + +LT E EE +
Sbjct: 166 LCSKCFHASDHVGHDVIYSIHTTGCGCCDCGDTEAWKTEINCKYHSNLTLEEKEEALKKL 225
Query: 173 STGQGDTIRPGPQI 186
+ + + PG +
Sbjct: 226 EEDKLNEV-PGSKK 238
>gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
Length = 606
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H++ C + C G E L + + + ++ + V C C P+V + +
Sbjct: 5 HLRCCAASGCRSAGAEALRSAL---LAARDQLGGAADAVTIKPVGCLRLCGRGPLVALDR 61
Query: 155 ----------DTYEDLTPERLEEIIDA 171
+ Y DLTP + +++A
Sbjct: 62 TGEAPGTASTELYADLTPAQAPALLEA 88
>gi|182680473|ref|YP_001834619.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636356|gb|ACB97130.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC
9039]
Length = 110
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
CM RG + L E K+ K L +S C C P++++ + Y
Sbjct: 28 SCMERGAQPLWERLGQKLEAKQLP-----GVSMTMTGCLSFCQAGPLMVVYPEGIWYHPE 82
Query: 161 TPERLEEIIDA 171
PE ++EI+ +
Sbjct: 83 KPEDIDEIVQS 93
>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
Length = 624
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVECQGACVNAP 148
V VC T C+ G + E R + +K L + + + + C G C P
Sbjct: 26 RVSVCAGTGCLAGGSLEFYERLRAIVAEKGLLVDVRLEKEPEHGIGVHKSGCHGFCEMGP 85
Query: 149 MVMIGK--DTYEDLTPERLEEIID 170
+V I Y + PE EEI +
Sbjct: 86 IVRIEPAGYLYLRVKPEDAEEIAE 109
>gi|99082773|ref|YP_614927.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040]
gi|99039053|gb|ABF65665.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040]
Length = 239
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 30/132 (22%)
Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLE------------IATFYTQFQLS--------- 88
Q E W+ AA A + +A+ Q
Sbjct: 71 QSLENWLPGAAGAWCAQQNGVPPEVFFASSPEHDDDVIRAVASAEVSLQRVVDRPRGEIG 130
Query: 89 -----PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
P + H+ VC C L+ L + +++I + C
Sbjct: 131 KGWDLPPPHQHHLLVCTGPRCHLKDAPNLADHLKSEI----RRAGLGDSCLVTTTGCVFP 186
Query: 144 CVNAPMVMIGKD 155
C P+++
Sbjct: 187 CNAGPVIVHYPR 198
>gi|146342244|ref|YP_001207292.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. ORS278]
gi|146195050|emb|CAL79075.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. ORS278]
Length = 120
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G + L + I R +D ++ C G C PM+++ D Y
Sbjct: 38 SCGALGVQPLWDRLTKTI---EAQRLTDVGVTA--AGCFGFCSAGPMMVVYPDGIWYRPT 92
Query: 161 TPERLEEIIDA-FSTGQ 176
PE ++EI+++ F G+
Sbjct: 93 KPEDIDEIVESHFKQGK 109
>gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Desulfatibacillum alkenivorans AK-01]
gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like)
[Desulfatibacillum alkenivorans AK-01]
Length = 1044
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR--NKIHQKPLHRNSDGTLSWE 136
T Q + T+A + + + + + + + +
Sbjct: 4 LTSIGQMEWLRNKTQAALSQARNVIHVCMTGCRAYGAAEVLQSLQDEVKRQGMEKEVEVR 63
Query: 137 EVECQGACVNAPMVMIGK--DTYEDLTPERLEEI----------IDAFSTGQGDTIRP 182
C G C AP++ + Y+++ PE EI ID + + T +P
Sbjct: 64 STGCHGFCARAPVIALDPLGVQYQEVGPEDAAEIIGQTIKQNRLIDRLAYKEPKTNKP 121
>gi|147676362|ref|YP_001210577.1| hypothetical protein PTH_0027 [Pelotomaculum thermopropionicum SI]
gi|146272459|dbj|BAF58208.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 93
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+Q+C + C LRG ++IE I H D + + C C + + IG
Sbjct: 3 VIQICVGSSCFLRGSREVIETVEKLI----NHYRLDDVVVLKGSFCMEHCNDGVTLKIGD 58
Query: 155 DTYEDLTPERLEEIIDA 171
T+ + E + + +
Sbjct: 59 KTFTGVNRESITGLFEK 75
>gi|225405725|ref|ZP_03760914.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme
DSM 15981]
gi|225042749|gb|EEG52995.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme
DSM 15981]
Length = 104
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
+ + V +C + C L+G ++IE + + Q L D S
Sbjct: 7 IFGVTPESRLTIKKRRKLGMKVTICIGSACHLKGSREIIEKLQQLVAQNGLSGKVDLNGS 66
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
+ C G C + V + + L PE EE
Sbjct: 67 F----CSGNCDHGVCVTVEDQLFS-LKPEDTEE 94
>gi|150020393|ref|YP_001305747.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermosipho melanesiensis BI429]
gi|149792914|gb|ABR30362.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
[Thermosipho melanesiensis BI429]
Length = 74
Score = 37.4 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+++C + C L+G +++ + ++ K L C G C + + I
Sbjct: 2 RIRICMGSSCHLKGAYDVVKKIK-ELDIKNLKLYGSL--------CFGKCESGINIEIDG 52
Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
+ ++PE ++EI+ F +
Sbjct: 53 ELVSHVSPENVQEIVKKFMKER 74
>gi|125571728|gb|EAZ13243.1| hypothetical protein OsJ_03166 [Oryza sativa Japonica Group]
Length = 375
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
RL EE + +F F++ES W++ +IS R I L AQ + +
Sbjct: 25 RLKEEMLEDPAFEFTDESLQWIDRIISLTYECRW----IKELRVAQSATKMLDYNVLGGK 80
Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
N ++ I ++ + C
Sbjct: 81 CNR-GISVIDSFKMLKGTDVLNKEETFLACTLGWC 114
>gi|296272233|ref|YP_003654864.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299]
gi|296096408|gb|ADG92358.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299]
Length = 120
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
N + QK + + G + C G C P++++ G Y L+ E++++I++
Sbjct: 37 LYNYLAQKMMEKGLMGPVQAIRTSCLGRCQMGPVLLVEPGHTMYCKLSKEKIDKIVEE 94
>gi|198284910|ref|YP_002221231.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667590|ref|YP_002427591.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198249431|gb|ACH85024.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519803|gb|ACK80389.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 105
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C G + + K H K L + + + C G C P+ ++ D Y +
Sbjct: 23 ACNNSGIAEEVFHA-AKQHAKALGIHGEKQVRVNRCGCLGRCDEGPIAVVYPDAVWYTYV 81
Query: 161 TPERLEEIIDA-FSTG 175
+ + EI+++ G
Sbjct: 82 DADDIREIVESHLRDG 97
>gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
Length = 667
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
V VC CM RG E++++ I + G++ E C C
Sbjct: 580 IYKPDQKGNIKVSVCFGNSCMQRGSEEILKHI---ISFVENGKYK-GSVGIEVSMCLEKC 635
Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
P+V + T E T + EE I
Sbjct: 636 FRGPVVKVANQTLEHCTTKAAEEAIQE 662
>gi|147920060|ref|YP_686183.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I]
gi|110621579|emb|CAJ36857.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I]
Length = 102
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLT 161
C + ++++ +I + L G + C G C P+V++ D Y+ +T
Sbjct: 24 CHSKAGVEVLQKFMEEIEMRELG----GEVFVNNTGCFGICEKGPIVVVYPDNVWYKSVT 79
Query: 162 PERLEEIIDAFSTG 175
+ + EII++ G
Sbjct: 80 SDDVTEIIESHIEG 93
>gi|299530595|ref|ZP_07044013.1| ferredoxin-like protein [Comamonas testosteroni S44]
gi|298721418|gb|EFI62357.1| ferredoxin-like protein [Comamonas testosteroni S44]
Length = 118
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C L G + + C+ K K G + + C C P+ ++ + Y +
Sbjct: 31 CCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNKAGCLDRCAGGPVAVVYPEAVWYTFI 88
Query: 161 TPERLEEIIDA-FSTGQ 176
++EI+++ G+
Sbjct: 89 DDSDIDEIVESHLKHGK 105
>gi|124514247|gb|EAY55761.1| probable ferredoxin [Leptospirillum rubarum]
gi|206602859|gb|EDZ39340.1| Probable ferredoxin [Leptospirillum sp. Group II '5-way CG']
Length = 86
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181
+ + + C C PMV++ + Y + + + +++ G+ R
Sbjct: 22 EKDILVTKTGCLDQCEYGPMVLLYPEGTWYSGMDEKSVRTLVEQIRDGKELLPR 75
>gi|78776534|ref|YP_392849.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251]
gi|78497074|gb|ABB43614.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251]
Length = 124
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
C+ + L + K+ ++ + GT+ C C + P++++ G Y L
Sbjct: 25 SCVTPQTQDLFQHLAQKLMKEGVM----GTIQPIRTSCLSRCSSGPVMLVEPGHFMYAAL 80
Query: 161 TPERLEEIIDA-FSTGQ 176
T E+++ I++ G+
Sbjct: 81 TKEKIDRIVEEHLIGGK 97
>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
Length = 597
Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
H+ VCG C GC ++ R + +K + + + C G C P+V++
Sbjct: 7 HLLVCGGEGCTSSGCNEVHGAFREAMRKKKIE----DEIKIVQTGCHGYCEKGPLVVVYP 62
Query: 155 D--TYEDLTPERLEEII-DAFSTGQGDT 179
+ Y + + EI+ + G+ T
Sbjct: 63 EGVMYNRVGVKDASEIVNEHLVKGKPVT 90
>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
Length = 624
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIH-------QKPLHRNSDGTLSWEEVECQGACVNA 147
+ VC T C+ G ++ + I + D ++ ++ C G C
Sbjct: 25 KILVCAGTGCVSSGALEIFDRLAELISQNGLDCQVELEKEPHDKSIGMKKSGCHGFCEMG 84
Query: 148 PMVMIGKD--TYEDLTPERLEEIID 170
P++ I + Y + + EEI+D
Sbjct: 85 PLIRIEPEGYLYTKVKLQDCEEIVD 109
>gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
Length = 549
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
L A+ ++ + + + +++ + V ATFY + V C + C+
Sbjct: 22 LAEARSEKKGLDQEVMHQISDEYLVGNANVYGAATFYDFLNPEQSNKKVFV--CAGSACL 79
Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
L G + + + Q S EV C G C
Sbjct: 80 LAG---TQQALQQTLEQHFDPT------SIGEVYCLGRC 109
>gi|160940740|ref|ZP_02088082.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC
BAA-613]
gi|158436260|gb|EDP14027.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC
BAA-613]
Length = 79
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++I + + + L D C G C + V +
Sbjct: 2 KVTICIGSACHLKGSREIISKLQKLVDENGLSDKVD----LNGAFCSGNCDHGVCVTVEG 57
Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
+ Y L PE EE + G+
Sbjct: 58 ELYS-LKPEDTEEFFENEIKGR 78
>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
BAA-613]
gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
BAA-613]
Length = 624
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL---HRNSDG-TLSWEEVECQ 141
+ G + VC T C+ G + R + D + + CQ
Sbjct: 17 RDRKDGYTCRILVCAGTGCVATGSLDVYSQLRELCKEDEGIRVELEKDVPHIGIVKSGCQ 76
Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDA 171
G C P+V I Y + PE EEI++
Sbjct: 77 GFCELGPLVRIEPQHCQYVKVQPEDCEEIVEK 108
>gi|254423540|ref|ZP_05037258.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335]
gi|196191029|gb|EDX85993.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335]
Length = 250
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
+ VC + C RG +L+ + L + + CQ C AP +M
Sbjct: 170 RILVCHKSGCNKRGGRQLVSALEQALQTYQLQDR----VEIQYTGCQKCCSKAPGLTIMP 225
Query: 153 GKDTYEDLTPERLEEIIDA 171
GK Y L P+ L +I+
Sbjct: 226 GKHRYYGLNPQDLPSLIEK 244
>gi|307720219|ref|YP_003891359.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294]
gi|306978312|gb|ADN08347.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294]
Length = 124
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEI 168
+ + QK + GT+ C C P++++ G Y LT E++++I
Sbjct: 29 PATQDLFQYLAQKLMQEGIMGTVQPIRTSCMNRCSAGPVMLVEPGHTMYAGLTKEKIDKI 88
Query: 169 IDA 171
I
Sbjct: 89 ISE 91
>gi|22297704|ref|NP_680951.1| putative ferredoxin [Thermosynechococcus elongatus BP-1]
gi|22293881|dbj|BAC07713.1| tlr0160 [Thermosynechococcus elongatus BP-1]
Length = 135
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147
R T C + E + ++ + +G + + C C
Sbjct: 19 QRHLFLCADQTKPLCCDKAVGLEAWEYLKKRLKELGLDQPRPEGCIFRTKANCLRVCQQG 78
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ D Y TP +E +I
Sbjct: 79 PILVVYPDGVWYHSATPAVIERVIQE 104
>gi|189346210|ref|YP_001942739.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
gi|189340357|gb|ACD89760.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
Length = 102
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVE---CQGACV 145
+ H+ VC + +G + I + + P + D +S V C C
Sbjct: 3 KPKHHIFVCASF--RAQGAPQGICHKKESLGLIPYLESELSDRGMSDVAVSATACLNLCE 60
Query: 146 NAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
P+V++ + Y ++ ++++EI+DA G+
Sbjct: 61 KGPVVVVYPENFWYGEIDSEDKIDEILDALEEGE 94
>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
Length = 576
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE--DLTPERLEEIIDAFST 174
L + D +E C G C P++ I + Y + PE + I++ +
Sbjct: 20 MDELEQIKDIQFEYEITGCIGMCHLEPIMEIHDNGEMYRFVKVMPEDVRPILEDYKN 76
>gi|212212920|ref|YP_002303856.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212]
gi|212011330|gb|ACJ18711.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212]
Length = 132
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
C T C + + + ++ L +G + + C C
Sbjct: 19 EKIRHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICC 76
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+ ++ D Y TP +E II
Sbjct: 77 QGPIAVVYPDGIWYHSCTPAVIERIIQE 104
>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 626
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-------NSDGTLSWEEVECQGACVNAP 148
+ +CG T C+ G K+ + + I Q+ L D ++ ++ C G C P
Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
++ I + Y + E EEI++
Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111
>gi|193213270|ref|YP_001999223.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
gi|193086747|gb|ACF12023.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
Length = 102
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGTLSWEEVE---CQGACV 145
+ H+ VC + G + I + + P +D +S V C C
Sbjct: 3 KPKHHIFVCASF--RAAGAPQGICHKKEALGLIPYLESELADRGMSDTAVSATACLNLCE 60
Query: 146 NAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
P+V++ + Y ++ ++++EI+DA G+
Sbjct: 61 KGPVVVVYPENFWYGEIDSEDKIDEILDALEEGE 94
>gi|110637215|ref|YP_677422.1| 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406]
gi|110279896|gb|ABG58082.1| possible 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406]
Length = 84
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
+ +C + C + R + + + + ++EC C +AP V
Sbjct: 10 IFICDGSKCGR------HKEVRKHLKEAIKEHHLKDRVEIFKMECSDRCKHAPVLCVQPA 63
Query: 154 KDTYEDLTPERLEEIIDAF 172
+ Y ++T ++II
Sbjct: 64 NEWYSEVTLRDADKIITDL 82
>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum E3 str. Alaska E43]
gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum E3 str. Alaska E43]
Length = 626
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-------NSDGTLSWEEVECQGACVNAP 148
+ +CG T C+ G K+ + + I Q+ L D ++ ++ C G C P
Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
++ I + Y + E EEI++
Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111
>gi|300866263|ref|ZP_07110974.1| putative ferredoxin [Oscillatoria sp. PCC 6506]
gi|300335734|emb|CBN56134.1| putative ferredoxin [Oscillatoria sp. PCC 6506]
Length = 155
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 89 PVGTRAHVQVCGTTP--CMLRGCEKLIEVCRNKIH----QKPLHRNSDGTLSWEEVECQG 142
+ + T P C + + ++ KP + C
Sbjct: 40 QIERHIFICADQTVPKCCDKEASLEAWNYLKKRLQELKLDKPSGDRPSCIFRTK-ANCLR 98
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C N P+++I D Y ++TP +E I+
Sbjct: 99 VCSNGPIMVIYPDGVWYRNVTPPIIERILQE 129
>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
Length = 598
Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C EK+I ++ L + + C G C P+V++
Sbjct: 7 HVLVCGGTGCTSSNSEKIISEFNVQLANNNLQ----NEVKIVKTGCFGLCAQGPIVVVYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + E ++EI + G+
Sbjct: 63 EGAMYTMVKVEDIKEITEEHLLKGR 87
>gi|325281878|ref|YP_004254420.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM
20712]
gi|324313687|gb|ADY34240.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM
20712]
Length = 80
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+++C + C RG +EV + I + L +S+ C+ C + P++ I +
Sbjct: 4 IKICLGSSCYSRGNNVHLEVIKKYIAENHLEA----EISFSGHLCEELCSSGPILRIDEK 59
Query: 156 TYEDLTPERLEEIIDA 171
Y+++ L +I+
Sbjct: 60 VYKEVNLSGLYKILQE 75
>gi|332529903|ref|ZP_08405854.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624]
gi|332040600|gb|EGI76975.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624]
Length = 113
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C E C+ + + G + + C C P+ ++ + Y +
Sbjct: 26 SCGDHQAEAAFAHCKKQ--VHEAGLSGKGQVRVNKAGCLDRCAGGPVAVVYPEETWYTYV 83
Query: 161 TPERLEEIIDA-FSTGQ 176
+ ++EI+++ G+
Sbjct: 84 DLKDIDEIVESHLKQGK 100
>gi|29653927|ref|NP_819619.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493]
gi|153209536|ref|ZP_01947432.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177']
gi|154706703|ref|YP_001424820.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111]
gi|161831414|ref|YP_001596517.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331]
gi|165923931|ref|ZP_02219763.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334]
gi|212218791|ref|YP_002305578.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154]
gi|29541190|gb|AAO90133.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493]
gi|120575329|gb|EAX31953.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177']
gi|154355989|gb|ABS77451.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111]
gi|161763281|gb|ABX78923.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331]
gi|165916623|gb|EDR35227.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334]
gi|212013053|gb|ACJ20433.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154]
Length = 132
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
C T C + + + ++ L +G + + C C
Sbjct: 19 EKIRHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICC 76
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P+ ++ D Y TP +E II
Sbjct: 77 QGPIAVVYPDGIWYHSCTPAVIERIIQE 104
>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
B str. Eklund 17B]
gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
botulinum B str. Eklund 17B]
Length = 626
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-------NSDGTLSWEEVECQGACVNAP 148
+ +CG T C+ G K+ + + I Q+ L D ++ ++ C G C P
Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
++ I + Y + E EEI++
Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111
>gi|120586949|ref|YP_961294.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120564363|gb|ABM30106.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris DP4]
Length = 100
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 91 GTRAHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
H+ VC + C+ +G L+ +I + L C
Sbjct: 3 KPDHHILVCMSFRGLEPKGTCIRKGAPDLVAHLDAEIAARGL------NAFVSTTGCLQF 56
Query: 144 CVNAPMVMIGK--DTYEDLTPER-LEEIIDAFSTGQG 177
C P++++ Y + E ++ I+DA G+
Sbjct: 57 CDKGPVLVVYPQGHWYGGVDDEDAIDAILDALEAGEP 93
>gi|323355906|gb|EGA87717.1| Thi11p [Saccharomyces cerevisiae VL3]
Length = 213
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ ++ + L +++ C G C ++ I D + PE++ + +
Sbjct: 14 CMQQVELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFL 73
Query: 170 DAFST 174
A
Sbjct: 74 KAIKK 78
>gi|169828909|ref|YP_001699067.1| putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41]
gi|168993397|gb|ACA40937.1| Putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41]
Length = 173
Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + G + H+ +C + CM + E++ + R++I + L D + C
Sbjct: 49 HKMTTWNLEGMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCN 104
Query: 142 GACVNAPMVMIGK--DTYEDLTPERLEEIIDAF 172
G C +A +V+ + Y + E ++
Sbjct: 105 GRCKDACVVIAYPQGNWYRVPSTEHARTLVQDL 137
>gi|259145781|emb|CAY79044.1| Thi13p [Saccharomyces cerevisiae EC1118]
Length = 317
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ ++ + L +++ C G C ++ I D + PE++ + +
Sbjct: 139 CMQQVELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFL 198
Query: 170 DAFST 174
A
Sbjct: 199 KAIKK 203
>gi|218442113|ref|YP_002380442.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
PCC 7424]
gi|218174841|gb|ACK73574.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
PCC 7424]
Length = 193
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 47/149 (31%), Gaps = 13/149 (8%)
Query: 32 RYPPSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF--- 85
+ P Q A++P G + ++ ++ ++ +
Sbjct: 43 KLPKDLRQDLDPAIMPGCWVEVNGFGKLCSKTGKLKLKAEEVRPTSAEQVKEPCPKVEEC 102
Query: 86 -QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ A + VC + C +G + + + + L + + C C
Sbjct: 103 NKAKTKKATASILVCQKSDCWKKGGKAMCQAIETCLRDNGLTDK----VQVKLTGCLKRC 158
Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
P +++ K Y + P+ + +++
Sbjct: 159 SKGPNMVVLPDKTNYTRVRPDEIPILLEK 187
>gi|78187393|ref|YP_375436.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273]
gi|78167295|gb|ABB24393.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273]
Length = 102
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 91 GTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC + C + LI +++ + + + C
Sbjct: 3 KPKHHIFVCASFRAQGAPQGICRKKESLSLIPYFESELADRGMTDVA-----VSATACLN 57
Query: 143 ACVNAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
C P+V+I + Y ++ ++++EI+DA G+
Sbjct: 58 LCEKGPIVVIYPENFWYGEVDSEDKVDEILDALEEGE 94
>gi|194334440|ref|YP_002016300.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271]
gi|194312258|gb|ACF46653.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271]
Length = 103
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVE---CQGAC 144
H+ VC + +G + I + + P + D ++ V C C
Sbjct: 2 EKPSHHILVCASF--RAQGTPQGICHKKESLSLIPYLESELSDRDMTDVVVSATGCLNVC 59
Query: 145 VNAPMVMIG--KDTYEDLT-PERLEEIIDAFSTGQ 176
P+V++ Y ++ E+++EI+DA G+
Sbjct: 60 EKGPIVVVYPENHWYGEIDSEEKIDEILDALEEGE 94
>gi|217076869|ref|YP_002334585.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B]
gi|217036722|gb|ACJ75244.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B]
Length = 75
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+++C + C L+G +++E + +++ + + C G C N + I
Sbjct: 2 VIKICMGSSCHLKGSYEVVEKIK-EMNLEGVKLYGSL--------CFGKCANGINIEIDG 52
Query: 155 DTYEDLTPERLEEIIDA-FSTGQ 176
+TP+ ++E I+ G
Sbjct: 53 VLISSVTPDNVKEKIEKFLKEGN 75
>gi|119494760|ref|ZP_01624781.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106]
gi|119452002|gb|EAW33231.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106]
Length = 189
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148
G +A + VC + C +G + + + + ++ ++ C C P
Sbjct: 109 GKKAQILVCDKSDCRKKGG----SHLCSALETAVQEQGLEEHVTIKKTGCLKRCKAGPNV 164
Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171
++M K Y ++ + L ++I
Sbjct: 165 VMMPDKTRYSRVSAKELPKLIAK 187
>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
Length = 627
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNA 147
+ VC T C+ G K+ + I + + S ++ C G C
Sbjct: 26 RILVCAGTGCVANGSLKVYAALKRMIEEKGLLTSVELVEEVSHEGIAVNISGCHGFCQMG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEIID 170
P+V Y + E EEI++
Sbjct: 86 PLVRFEPSGLLYCKVKEEDAEEIVN 110
>gi|284053605|ref|ZP_06383815.1| Ferredoxin-like protein [Arthrospira platensis str. Paraca]
gi|291565676|dbj|BAI87948.1| ferredoxin-like protein [Arthrospira platensis NIES-39]
Length = 150
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQ-KPLHRNSD--GTLSWEEVECQGACV 145
R T C + +N++ + +D G + + C C
Sbjct: 36 QRHIFLCADQTHPKCCSKSASIESWNYLKNRLKELNLDRPTADHPGCIFRTKANCLRVCC 95
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
P++++ D Y TPE +E II
Sbjct: 96 QGPILVVYPDGVWYRSATPEVIERIIQE 123
>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
Length = 626
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ VCG C G + LI+ I ++ + + V C G C
Sbjct: 31 HTNPKEKQIVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P V++ + Y + ++ I+D
Sbjct: 86 PNVVVYPEGIFYTRVKLSDVKNIVDK 111
>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
Length = 626
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ VCG C G + LI+ I ++ + + V C G C
Sbjct: 31 HTNPKEKQIVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P V++ + Y + ++ I+D
Sbjct: 86 PNVVVYPEGIFYTRVKLSDVKNIVDK 111
>gi|328952093|ref|YP_004369427.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109]
gi|328452417|gb|AEB08246.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109]
Length = 111
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVNA 147
H+ VC + + + + + + + G + C C
Sbjct: 12 EKPEYHIFVCMSFRGLEPKGKCIRKNAQELLSYLESELADRGMNNVMVSTTGCLKLCDKG 71
Query: 148 PMVMI--GKDTYEDLTPE-RLEEIIDAFSTG 175
P+V++ Y + E ++ I+DA G
Sbjct: 72 PVVVVYPNGYWYAGVDGEGAVDAILDALENG 102
>gi|171060902|ref|YP_001793251.1| ferredoxin-like protein [Leptothrix cholodnii SP-6]
gi|170778347|gb|ACB36486.1| ferredoxin-like protein [Leptothrix cholodnii SP-6]
Length = 131
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGT--TPCMLRGCEKLIEVCRNKIHQKPLHRN 128
+ ++++Y + + C + + C+ + K
Sbjct: 16 PPPTIEIMSSYY------QRHIFFCLNQRDNGQSSCADFPAQAAFDHCKKQ--VKAAGLA 67
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
G + + C C P+ ++ + Y + ++EI+++ GQ
Sbjct: 68 GPGQVRVNKAGCLDRCAGGPVAVVYPEAVWYSFVDNSDIDEIVESHLKNGQ 118
>gi|118359489|ref|XP_001012984.1| hypothetical protein TTHERM_00322830 [Tetrahymena thermophila]
gi|89294751|gb|EAR92739.1| hypothetical protein TTHERM_00322830 [Tetrahymena thermophila
SB210]
Length = 577
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAV----------IPLLMRAQEQEG 54
+ + FQP + F E + ++ S+YP + + A IP
Sbjct: 358 KKYKINFQPDAMKFD-EVLDEIKKIYSKYPNNEQKIAQQMIYLYSLEKIPFYKLINTTLN 416
Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFY 82
++ A I V+ M I + + A F
Sbjct: 417 TLNEALILVM-----MPLIELFQTAIFK 439
>gi|113955308|ref|YP_730132.1| ferredoxin [Synechococcus sp. CC9311]
gi|113882659|gb|ABI47617.1| Ferredoxin [Synechococcus sp. CC9311]
Length = 111
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRG------CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
+S + + T ++ ++ + S+G + +V+C
Sbjct: 1 MSQRISHHLLLCATPTKAKCCDPEIGAASWDALKRQVRELDLE-NPSRSEGIVLRSKVDC 59
Query: 141 QGACVNAPMVMIGKD--TYEDLTPERLEEIID-AFSTGQG 177
C P++++ D Y +TPER+ I+ GQ
Sbjct: 60 LRICDQGPILLVWPDGTWYRGVTPERISSILQRHIIQGQP 99
>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
ATCC 9817]
gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
ATCC 9817]
Length = 592
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
+ +CG T C+ + + E ++ ++ ++ C G C P+V +
Sbjct: 4 KILICGGTGCLSSKSKDIKENLEKELKERNINDVE-----VVLTGCFGFCEKGPIVKVVP 58
Query: 153 GKDTYEDLTPERLEEIID 170
+ Y ++ PE ++I++
Sbjct: 59 ANNFYIEVKPEDAKKIVE 76
>gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum]
Length = 1059
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 118 NKIHQKPLHRNSDGTL--SWEEVECQGACVNAP-----MVMIGKDTYEDLTPERLEEIID 170
KIH + L + + C G C N P + + TY +TPE +E I+
Sbjct: 21 KKIHDEVLRVVAKKHYPVTVHPTGCVGMCHNEPLLDVQVAGRSRVTYTQVTPESVEGILK 80
Query: 171 A 171
A
Sbjct: 81 A 81
>gi|254412920|ref|ZP_05026692.1| hypothetical protein MC7420_2080 [Microcoleus chthonoplastes PCC
7420]
gi|196180084|gb|EDX75076.1| hypothetical protein MC7420_2080 [Microcoleus chthonoplastes PCC
7420]
Length = 180
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIH----QKPLHRNSDGTLSWEEVECQ 141
R + T C + + + ++ +P + C
Sbjct: 22 NQIQRHVLLCADQTKPKCCSKQASLDSWDYLKTRLKQLKLDQPTQERPSCIFRTK-ANCL 80
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C + P++++ D Y + TPE +E II
Sbjct: 81 RVCASGPILVVYPDGVWYRNATPEVIERIIQE 112
>gi|119509521|ref|ZP_01628669.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414]
gi|119465927|gb|EAW46816.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414]
Length = 110
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
I+ Q P V+VC C +G K++ + ++
Sbjct: 4 ISQSSKSPQADPNSAARCVRVCQNRTCKKQGAAKVLAAFATFLVPD---------VTVTA 54
Query: 138 VECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C G C N PMV++ D Y + P+ + +++
Sbjct: 55 SGCLGQCGNGPMVLVLPDMVWYSGVRPDEVPLVVEQ 90
>gi|196228397|ref|ZP_03127264.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus
Ellin428]
gi|196227800|gb|EDY22303.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus
Ellin428]
Length = 168
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
++VC C G ++L + + + ++ L GT+ E C C P
Sbjct: 93 IRVCNKKNCWRNGGKELWDALEDTLARQGLT----GTIPLEGAHCLDHCKRGPNAEWRGH 148
Query: 156 TYEDLTPERLEEII 169
+ TP E I+
Sbjct: 149 DFHHCTPRDAERIV 162
>gi|302387730|ref|YP_003823552.1| hypothetical protein Closa_3402 [Clostridium saccharolyticum WM1]
gi|302198358|gb|ADL05929.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 79
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++I ++ ++ D + C G CVN V +
Sbjct: 2 RVTICIGSACHLKGSREIIA----QLQTLVKEQHLDDKVDLNGSFCCGDCVNGVCVTVDG 57
Query: 155 DTYEDLTPERLEEIIDA 171
Y L PE E D
Sbjct: 58 QLYS-LKPEDTREFFDK 73
>gi|332712123|ref|ZP_08432051.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L]
gi|332348929|gb|EGJ28541.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L]
Length = 185
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+A + VC + C RG + + + + L + +E C C +
Sbjct: 101 KTPTRKASILVCQKSSCRKRGGQAVCNAIASSLKDHGLE----DQVKIKETGCLKQCKHG 156
Query: 148 P--MVMIGKDTYEDLTPERLEEIID 170
P ++M K Y ++ P+++ +I+
Sbjct: 157 PNLVMMPDKARYSEVAPQQIPTLIE 181
>gi|187251664|ref|YP_001876146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Elusimicrobium minutum Pei191]
gi|186971824|gb|ACC98809.1| Glucose-inhibited division protein [Elusimicrobium minutum Pei191]
Length = 587
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
F E +++I P SAV +L+ + ++ V + + I +
Sbjct: 512 DRFKKDAEKLAQADKII--IPEGFDPSAVKGILIESSQKLKKVRPQTLGQASRIPGVTPA 569
Query: 74 RVLEIATFYTQFQLSPVG 91
+ +A +++LS
Sbjct: 570 DIQLLAVHIERYRLSKNK 587
>gi|86607084|ref|YP_475847.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
gi|86555626|gb|ABD00584.1| putative iron-sulfur cluster-binding protein [Synechococcus sp.
JA-3-3Ab]
Length = 184
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
V VC + C RG +++ + + P G V C C P V+
Sbjct: 101 VVLVCQKSDCCRRGAMAVMQALQAHLAAYPETIRVQG------VGCMKDCKRGPNVVFLP 154
Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
K Y ++P+ + ++ P
Sbjct: 155 DKARYSGVSPQGIPALLQRHFPLADPVPSP 184
>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
Length = 598
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
HV VCG T C K+I+ + L + + C G C P+V++
Sbjct: 7 HVLVCGGTGCASSDSFKMIDEFDEAFKKYGLE----KEVKLVKTGCFGLCEAGPIVIVYP 62
Query: 155 D--TYEDLTPERLEEIIDA-FSTGQ 176
+ Y + ++ I + G+
Sbjct: 63 EGAFYSHVKLSDIDRITEEHLLKGR 87
>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
Length = 596
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ VCG T C E++IE R + Q L C G C P+V +
Sbjct: 5 TNYILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKM 59
Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQG 177
Y + P +EI+ + G+
Sbjct: 60 IPDNTFYVQVQPSDADEIVREHLVKGRK 87
>gi|121603112|ref|YP_980441.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2]
gi|120592081|gb|ABM35520.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2]
Length = 123
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 78 IATFYTQFQLSPVGTRA--HVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
AT T + + H+ C C +G ++ + C++ K
Sbjct: 4 AATQTTSSDAAKPDSYYERHIFFCLNQRTGEPCCADQGAQQAFDRCKSL--VKAAGLAGP 61
Query: 131 GTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
G + + C C P+ ++ + Y + ++EI+++ GQ
Sbjct: 62 GKVRVNKAGCLDRCAGGPVAVVYPEAVWYSYVDASDIDEIVESHLLNGQ 110
>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
Length = 596
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ VCG T C E++IE R + Q L C G C P+V +
Sbjct: 5 TNYILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKM 59
Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQG 177
Y + P +EI+ + G+
Sbjct: 60 IPDNTFYVQVQPSDADEIVREHLVKGRK 87
>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
Length = 596
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ VCG T C E++IE R + Q L C G C P+V +
Sbjct: 5 TNYILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKM 59
Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQG 177
Y + P +EI+ + G+
Sbjct: 60 IPDNTFYVQVQPSDADEIVREHLVKGRK 87
>gi|207345761|gb|EDZ72475.1| YFL058Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 184
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ ++ + L +++ C G C ++ I D + PE++ + +
Sbjct: 20 CMQQVELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFL 79
Query: 170 DAFST 174
A
Sbjct: 80 KAIKK 84
>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
Length = 597
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
V VC T C + LI+ R +I + +S C G C P V I D
Sbjct: 6 VLVCAGTGCSIGNSGALIDAFRTEIKS----MGLESEVSVLRTGCLGLCGVGPNVSIYPD 61
Query: 156 --TYEDLTPERLEEII-DAFSTGQG 177
Y+ + E ++EI+ + F G+
Sbjct: 62 NIIYKSVKVEDVKEIVMEHFYKGRP 86
>gi|21674473|ref|NP_662538.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
gi|21647662|gb|AAM72880.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
Length = 100
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 91 GTRAHVQVCGTTPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
HV VC R ++ ++++ + + G + C G C P
Sbjct: 8 PYIVHVFVCTNDRGGERKSCADNNSQLVKDQLKKAVDGKGWKGKVRVSTSGCMGVCGEGP 67
Query: 149 MVMIGKD--TYEDLTPERLEEII 169
VMI + ++P+ ++ ++
Sbjct: 68 NVMIYPQKLWFSRVSPDDVDAVL 90
>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
Length = 595
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
H+ +C T C+ ++ + I + C G C P+++I
Sbjct: 6 HILICHGTACVSSESREVYKALEKAID----EAGLADQVRILHTGCFGFCARGPIILIHP 61
Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQ 176
G Y +++ ++EI++ G
Sbjct: 62 GGVMYCEVSVGDVKEIVEEHIKKGN 86
>gi|282890777|ref|ZP_06299297.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499370|gb|EFB41669.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 121
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C + E + ++ K LH + G + + +C C P+V++ D Y
Sbjct: 34 CCQPAEGLESWEYLKTRL--KELHLSELGGIYRSKADCLRVCKKGPIVVVYPDGIWYHSC 91
Query: 161 TPERLEEII-DAFSTGQGDT 179
TPE LE II + G+
Sbjct: 92 TPEVLERIIQEHLIQGRPVK 111
>gi|159468552|ref|XP_001692438.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278151|gb|EDP03916.1| predicted protein [Chlamydomonas reinhardtii]
Length = 119
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 18/99 (18%)
Query: 87 LSPVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVEC 140
R T C K + + + + + + C
Sbjct: 9 RLATPGRHLFLCSDQTVAKCCSKADGIKSWDYLKKRCKELGLEGGEVP----FWRTKANC 64
Query: 141 QGACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171
C P+ ++ + Y TPE LE I+
Sbjct: 65 LRVCAMGPVAVVYPEQARACACVYYHSCTPEVLERILQE 103
>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 639
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
L + + +++ G + + + +K + + + C G C
Sbjct: 17 LKKLKPKNKIRISVGLA--TCGISVGGALLYDLLEKKIKEFGLENKVELSKTGCIGFCKE 74
Query: 147 APMVMIGKD-----TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
P+V I +TPE ++EI+ + + + QID+
Sbjct: 75 EPIVNIKIPGKAIVVLHRVTPEDVDEILKTIADDEYKFPKVFFQIDKW 122
>gi|303246370|ref|ZP_07332649.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ]
gi|302492080|gb|EFL51955.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ]
Length = 103
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIGKDTYEDL 160
C +G L+ + + C C P +VM Y +
Sbjct: 25 ICHKKGSHNLMGYF------EEGVLDRGIDARIVSTGCMKQCEEGPIVVVMPENWWYRGI 78
Query: 161 T-PERLEEIIDAFSTGQ 176
++++EI+DA G+
Sbjct: 79 DSEDKVDEILDALENGE 95
>gi|150388474|ref|YP_001318523.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
gi|149948336|gb|ABR46864.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
Length = 129
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
++ E + S + V T + G +I ++ + +
Sbjct: 12 KIREEVQQGMDLRKSEDEKHIKIMVGMATCGIAAGARDTFNTLLEEIDKRKM-----KNV 66
Query: 134 SWEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEII-DAFSTGQ 176
+V C G C + P+V + Y + E+ EII G+
Sbjct: 67 YLVQVGCMGYCHDEPIVQVNAPGASPVLYGHINQEKAIEIIGKHIEKGE 115
>gi|302339760|ref|YP_003804966.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293]
gi|301636945|gb|ADK82372.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293]
Length = 93
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ + HV VC T C RG +L+E R + K + + E +
Sbjct: 1 MGEHQQKEAKMHVSVCMGTNCTFRGASQLMETLRAEEGIKDHCIIEEMSCPDELCD---H 57
Query: 144 CVNAPMVMIGKDTYEDLTPERL-EEIIDAFSTGQGD 178
+P+V I D PE + +E+ +
Sbjct: 58 SRRSPVVKIDDDYVMQAKPEAILDEVYKRIRDNREP 93
>gi|307154991|ref|YP_003890375.1| hypothetical protein Cyan7822_5219 [Cyanothece sp. PCC 7822]
gi|306985219|gb|ADN17100.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length = 96
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C C G ++ E+ + N + +V C G C N PMV+I
Sbjct: 8 KVLICCNRTCRKSGSSRIFEIFK---------TNPIPEVEVIKVGCLGECGNGPMVLILP 58
Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIR 181
+ Y + P+ + II G
Sbjct: 59 EEIWYWQVQPDEVSMIIQKHLRGHSPIKT 87
>gi|330505811|ref|YP_004382680.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01]
gi|328920097|gb|AEB60928.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01]
Length = 230
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
+ +C C +G L + R ++ + +G + +CQ C P
Sbjct: 131 PPHAQRLLLCNGPRCTRKGALGLWKTLRQRL-KAAGRLECEGGVHITRSQCQFPCDLGPT 189
Query: 150 VMIGK--DTYEDLTPERLEEIIDA-FSTGQGDT 179
+ + Y + ++D G+
Sbjct: 190 ASLYPQGEWYGIRDEAAVIRLVDERLVAGRALP 222
>gi|145220156|ref|YP_001130865.1| ferredoxin, 2Fe-2S [Prosthecochloris vibrioformis DSM 265]
gi|145206320|gb|ABP37363.1| ferredoxin, 2Fe-2S [Chlorobium phaeovibrioides DSM 265]
Length = 102
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVE---CQGACV 145
+ H+ VC + +G + I + + P + D +S V C C
Sbjct: 3 KPKHHIFVCASF--RAQGAPQGICHKKESLSLIPYFESELADRGMSDVAVSATACLNLCE 60
Query: 146 NAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
P+V+I + Y ++ E+++EI+DA G+
Sbjct: 61 KGPIVVIYPENFWYGEVNSEEKVDEILDALEEGE 94
>gi|125972952|ref|YP_001036862.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC
27405]
gi|256005708|ref|ZP_05430664.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium
thermocellum DSM 2360]
gi|281417162|ref|ZP_06248182.1| conserved hypothetical protein [Clostridium thermocellum JW20]
gi|125713177|gb|ABN51669.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC
27405]
gi|255990339|gb|EEU00465.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium
thermocellum DSM 2360]
gi|281408564|gb|EFB38822.1| conserved hypothetical protein [Clostridium thermocellum JW20]
gi|316940812|gb|ADU74846.1| hypothetical protein Clo1313_1790 [Clostridium thermocellum DSM
1313]
Length = 81
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV-NAPMVMIGK 154
+++C + C L+G +I ++ I +K LH D ++ C C N V +
Sbjct: 4 IKICVGSSCHLKGSYNVINEFQHLIEEKALHDKIDIKATF----CMKQCQKNGVAVEVNN 59
Query: 155 DTYEDLTPERLEE 167
+ + L PE EE
Sbjct: 60 EIFGVL-PEAAEE 71
>gi|91786159|ref|YP_547111.1| ferredoxin-like protein [Polaromonas sp. JS666]
gi|91695384|gb|ABE42213.1| Ferredoxin-like protein [Polaromonas sp. JS666]
Length = 124
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C ++ + C+++ K G + + C C P+ ++ + Y +
Sbjct: 37 SCANHQAQEGFDRCKSQ--VKAAGLAGPGKVRVNKAGCLDRCAGGPVAVVYPEAVWYSYV 94
Query: 161 TPERLEEIIDA-FSTGQ 176
++EI+++ GQ
Sbjct: 95 DAHDIDEIVESHLKNGQ 111
>gi|293374978|ref|ZP_06621273.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325843327|ref|ZP_08167910.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1]
gi|292646388|gb|EFF64403.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325489356|gb|EGC91729.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1]
Length = 84
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+++C + C L+G ++I++ ++ I + L + ++ C G C A VM
Sbjct: 3 TIKICVGSSCHLKGSYEVIQIFQSLIEKHQLQEVLELRAAF----CLGHCTEAVSVMGPN 58
Query: 155 DTYEDLTPERLEEIIDA 171
+ ++P+ E++ +A
Sbjct: 59 EEVLAVSPDDAEKLFEA 75
>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
Length = 626
Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ VCG C G + LI+ I ++ + + V C G C
Sbjct: 31 HTNPKEKQIVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETG 85
Query: 148 PMVMIGKD--TYEDLTPERLEEIIDA 171
P V++ + Y + ++ I+D
Sbjct: 86 PNVVVYPEGIFYTRVKLSDVKSIVDK 111
>gi|323346934|gb|EGA81212.1| Thi11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 210
Score = 36.2 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
+ ++ + L +++ C G C ++ I D + PE++ + +
Sbjct: 32 CMQQVELEEYLAKQGRPASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFL 91
Query: 170 DAFST 174
A
Sbjct: 92 KAIKK 96
>gi|309389846|gb|ADO77726.1| hypothetical protein Hprae_1599 [Halanaerobium praevalens DSM 2228]
Length = 82
Score = 36.2 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C + C L+G EK+IE+ + +I G+ CQG C + I
Sbjct: 4 IIICVGSSCHLKGSEKVIEIFKEEIKKHNLDQVEISGSF------CQGNCTEGVNIEING 57
Query: 155 DTYEDLTPERLEEIIDA 171
E + E +EI
Sbjct: 58 QKIEAVNEENAQEIFKK 74
>gi|149925916|ref|ZP_01914179.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105]
gi|149825204|gb|EDM84415.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105]
Length = 103
Score = 36.2 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD- 155
Q C C K K L N G + + C C P++++ +
Sbjct: 14 QRPNNESC-CADCHASAAHAHAKERIKKLGLNGQGKIRMNKAGCLDRCDEGPVMVVYPEG 72
Query: 156 -TYEDLTPERLEEIIDA 171
Y + ++EIID+
Sbjct: 73 VWYTYVDISDVDEIIDS 89
>gi|254458740|ref|ZP_05072164.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1]
gi|207084506|gb|EDZ61794.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1]
Length = 124
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
C+ + L + K+ Q+ + GT+ C C + P++++ G Y L
Sbjct: 25 SCVTPQTQDLFQYLATKLMQEGIM----GTVQPIRTSCMNRCSSGPIMLVEPGHTMYAGL 80
Query: 161 TPERLEEIIDA 171
T E++++II
Sbjct: 81 TKEKIDKIISE 91
>gi|166367039|ref|YP_001659312.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843]
gi|166089412|dbj|BAG04120.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843]
Length = 99
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ V VC + C+++G +L+ + + + + G CQG C +P V
Sbjct: 4 PQKRFVMVCQHSSCLVQGASELLLAWQTAALPEDVIVMTSG--------CQGQCSTSPTV 55
Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQG 177
I + Y + PE + +I++ GQ
Sbjct: 56 RIIPEETWYCRVKPEDVNQIVEEHLKNGQP 85
>gi|116784081|gb|ABK23206.1| unknown [Picea sitchensis]
Length = 339
Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
++VC + C G E L+ +I++ + + + +C G C NAP V +
Sbjct: 241 VIKVCMSGKCKKSGSEMLLGAFEERINKSGIGFD----VEAVGCKCMGKCRNAPSVRVQT 296
Query: 155 D-------TYEDLTPERLEEIIDA---FSTGQGDTIRPG 183
+ + + ++ I+ + Q + + G
Sbjct: 297 EEDVGKGVMHMGVNIGDIDLILAQHFGLNLQQPPSPKEG 335
>gi|159030120|emb|CAO91012.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 99
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ V VC + C+++G +L+ + + + + G CQG C +P V
Sbjct: 4 PQKRFVMVCQHSSCLVQGASELLLAWQTAALPEDVIVMTSG--------CQGQCSTSPTV 55
Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQG 177
I + Y + PE + +I++ GQ
Sbjct: 56 RIIPEETWYCRVKPEDVNQIVEEHLKNGQP 85
>gi|304439875|ref|ZP_07399769.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371614|gb|EFM25226.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 92
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 95 HVQVCGTTPCMLRGCEKLI---EVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146
V VC + C + G ++ E N++ S L +C C
Sbjct: 2 KVTVCMGSRCTMMGANQIYDQLEYIANELCGPESELCSSKNLELNISKCLNLCKGENERK 61
Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFSTG 175
AP+V+I + + TP+ + E++++A
Sbjct: 62 APIVVIDDEIVYNATPQVVSEKVMEALRQD 91
>gi|268609784|ref|ZP_06143511.1| Resolvase domain protein [Ruminococcus flavefaciens FD-1]
Length = 517
Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPE 163
C G C N+ G + P + + ED +
Sbjct: 337 CACCGYAMHFNHCANRKGVVYHRFIDYGKFTLNGCP-------TPPIQLKPRQVEDAVLQ 389
Query: 164 RLEEIIDAFSTGQGDTIRP 182
+++ I+ + + +P
Sbjct: 390 EMQKRIEQLKIAKREDSKP 408
>gi|194335513|ref|YP_002017307.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
gi|194307990|gb|ACF42690.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
Length = 100
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + AHV VC + ++ ++K+ Q + G + C
Sbjct: 1 MQKQREMPYVAHVFVCTNDRGGEKKSCADNNSQLTKDKLKQAVDEKGWKGKVRISTSGCM 60
Query: 142 GACVNA--PMVMIGKDTYEDLTPERLEEIIDAF 172
G C N M+ K + + P+ ++EI+ A
Sbjct: 61 GLCGNGSHVMIYPQKVWFSGVLPDDVDEIVSAI 93
>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
Length = 596
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
++ VCG T C E++IE R + Q L C G C P+V +
Sbjct: 5 TNYILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKM 59
Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQG 177
Y + P +EI+ + G+
Sbjct: 60 IPDNTFYVQVQPSDTDEIVREHLVKGRK 87
>gi|21674360|ref|NP_662425.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
gi|21647538|gb|AAM72767.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
Length = 102
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 91 GTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ VC + C + LI +++ + + + C
Sbjct: 3 KPKHHIFVCASFRAQGAPQGMCHKKESLNLIPYLESELADRGMSDVA-----VSATACLN 57
Query: 143 ACVNAPMVMIGKD--TYEDLT-PERLEEIIDAFSTGQ 176
C P++++ + Y ++ ++++EI+DA GQ
Sbjct: 58 LCEKGPVLVVYPENFWYGEIDSEDKVDEILDALEEGQ 94
>gi|258513530|ref|YP_003189752.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans
DSM 771]
gi|257777235|gb|ACV61129.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans
DSM 771]
Length = 119
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
+ V V T + G + ++ +I K + ++ + C GAC
Sbjct: 18 ISIRERKQEITVNVSMGTCGIAAGARETMKTLIEEISSKNI-----KDIALTQTGCLGAC 72
Query: 145 VNAPMVMIG----KDTYEDLTPERLEEIID-AFSTGQ 176
P+V I K TY ++ E+ +I++ G+
Sbjct: 73 QQEPLVQIQKGGEKVTYINVDQEKARQIVNRHLLEGK 109
>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit beta (hymB-like); putative signal
peptide [Candidatus Cloacamonas acidaminovorans]
gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
hydrogenase), subunit beta (hymB-like); putative signal
peptide [Candidatus Cloacamonas acidaminovorans]
Length = 589
Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156
C + G +++ ++ ++ C G C P+V G
Sbjct: 12 SCGVAAGAQEVYLALEQYLNANSRPVI------LKKTACIGMCFEEPIVQFVGSELGSIH 65
Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179
PE + I++ + G+
Sbjct: 66 IGKANPETITHILEDYIAGKTPA 88
>gi|268611939|ref|ZP_06145666.1| Resolvase domain protein [Ruminococcus flavefaciens FD-1]
Length = 517
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPE 163
C G C N+ G + P + + ED +
Sbjct: 337 CACCGYAMHFNHCANRKGVVYHRFIDYGKFTLNGCP-------TPPIQLKPRQVEDAVLK 389
Query: 164 RLEEIIDAFSTGQGDTIRP 182
+++ I+ + + +P
Sbjct: 390 EMQKRIEQLKIAKREDSKP 408
>gi|302879930|ref|YP_003848494.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans
ES-2]
gi|302582719|gb|ADL56730.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans
ES-2]
Length = 103
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
G+ C G +K + +NK+ ++ ++ C C P+++I +
Sbjct: 17 DGSDCCGNHGAQKARDYVKNKV-KELGISARGNSIRINSAGCLDRCDEGPVLVIYPEGVW 75
Query: 157 YEDLTPERLEEII-DAFSTGQ 176
Y + L+EII + G+
Sbjct: 76 YTFIDESDLDEIIAEHLQHGR 96
>gi|300114570|ref|YP_003761145.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113]
gi|299540507|gb|ADJ28824.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113]
Length = 104
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
R HV C C + + K K L + C C
Sbjct: 7 RYHVFFCTNQRDDGRPCCQNHDALAIRNYAKEK--VKALGLARRRQVRINTAGCLNRCAQ 64
Query: 147 APMVMIGKD--TYEDLTPERLEEII-DAFSTGQG 177
P +++ + Y T + ++EII + GQ
Sbjct: 65 GPAMVVYPEGTWYTYTTRKDIDEIITEHLMNGQP 98
>gi|296134041|ref|YP_003641288.1| ferredoxin [Thermincola sp. JR]
gi|296032619|gb|ADG83387.1| ferredoxin [Thermincola potens JR]
Length = 138
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--- 153
Q T G + ++ D V C+GAC P+V +
Sbjct: 46 QPRITVGMGTCGIKAGARHVFQAFGEELKQVGCDAV--LVPVGCKGACSYEPLVEVKLPG 103
Query: 154 --KDTYEDLTPERLEEIIDAFSTGQGDT 179
Y ++ PE+++ I+ +
Sbjct: 104 LPTVLYGNVDPEKVKHIVRQHLMKKQPV 131
>gi|307153358|ref|YP_003888742.1| hypothetical protein Cyan7822_3525 [Cyanothece sp. PCC 7822]
gi|306983586|gb|ADN15467.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length = 194
Score = 35.8 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
A + VC + C +G + + + + + L + + C C P
Sbjct: 108 RKPAASILVCQKSDCWKKGGKDMCQAIESCLKDNGLE----DQVQVKRTGCLKRCSKGPN 163
Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171
++I K Y + P+ + +++
Sbjct: 164 MIILPDKANYTRVKPQEIPVLLEK 187
>gi|126661123|ref|ZP_01732203.1| hypothetical protein CY0110_09560 [Cyanothece sp. CCY0110]
gi|126617599|gb|EAZ88388.1| hypothetical protein CY0110_09560 [Cyanothece sp. CCY0110]
Length = 174
Score = 35.8 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQ---KPLHRNSDGTLSWEEVECQGACV 145
R T C + + + ++ + + + + C C+
Sbjct: 41 QRHLFLCADQTKPKCCSKVTSLEAWDYLKRRLKELKLDQVTETQPSCIFRTKANCLRVCM 100
Query: 146 NAPMVMIGKD--TYEDLTPERLEEIIDA 171
+ P++++ D Y TPE +E II
Sbjct: 101 DGPILVVYPDGVWYRQATPEVIERIIQE 128
>gi|284038859|ref|YP_003388789.1| ferredoxin [Spirosoma linguale DSM 74]
gi|283818152|gb|ADB39990.1| ferredoxin-like protein [Spirosoma linguale DSM 74]
Length = 120
Score = 35.8 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C +L++ + + ++ L + + C AC P +++ + Y ++
Sbjct: 39 SCGEAHGNELVDAFKAALAERGLL----KEMRAQRTGCLDACAFGPTLVVYPEGTYYGNV 94
Query: 161 TPERLEEIIDA 171
+ EI+D+
Sbjct: 95 QLSDVAEIVDS 105
>gi|303239625|ref|ZP_07326150.1| ferredoxin [Acetivibrio cellulolyticus CD2]
gi|302592796|gb|EFL62519.1| ferredoxin [Acetivibrio cellulolyticus CD2]
Length = 122
Score = 35.8 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 133 LSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEII-DAFSTGQ 176
++ C G C P+V I K TY +TPE+ I+ + G+
Sbjct: 61 VTVTMTGCIGVCRLEPVVEIIDKDGNKVTYVKMTPEKAARIVAEHIVNGR 110
>gi|119513294|ref|ZP_01632334.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414]
gi|119462057|gb|EAW43054.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414]
Length = 218
Score = 35.8 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
+ P + + VC + CM RG + + + + + L ++ + C C
Sbjct: 111 KTKPAKNKETILVCQKSDCMKRGGKAVCQALEAALSNRGLE----DQVTIKGTGCMKKCK 166
Query: 146 NAPMVMIGKDT-YEDLTPERLEEIIDAFSTGQGDTIRP 182
P +++ T Y + ++ I+D + +P
Sbjct: 167 AGPNIVMPDKTRYSRIPSTQVPAIMDKHFADIREEEQP 204
>gi|303242582|ref|ZP_07329059.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302589886|gb|EFL59657.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 80
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++IE +N I L + C CVN V IG
Sbjct: 2 KVAICIGSSCHLKGSRQIIEQLQNMIAANNLEEK----IELCGAFCMKNCVNGVSVTIGD 57
Query: 155 DTYEDLTPERLEEIID 170
+ + +TPE + +
Sbjct: 58 ELFS-VTPENAKNFFE 72
>gi|188585465|ref|YP_001917010.1| conserved hypothetical protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350152|gb|ACB84422.1| conserved hypothetical protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 77
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
+ VC + C L+G +I K+ +K N + + C G C A V +
Sbjct: 3 INVCVGSACHLKGAYDVINSIEKKLEEK----NLTDKVELKAAFCLGECTKAVSVKVDDG 58
Query: 156 TYEDLTPERLEEIIDA 171
L E +E+ I+
Sbjct: 59 PVHSLALEDVEDFIEK 74
>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
Length = 573
Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
+ ++ + D +S + C G C P++++ D Y + + + EI++ G+
Sbjct: 4 LREELKKQGLDEEVSVVQTGCHGLCALGPIMIVYPDATFYAMVKEDDIPEIVEEHLLKGR 63
Query: 177 G 177
Sbjct: 64 P 64
>gi|312135113|ref|YP_004002451.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis
OL]
gi|311775164|gb|ADQ04651.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis
OL]
Length = 129
Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 131 GTLSWEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEII-DAFSTGQG 177
++ + C G C P+V + K TY +TPE++ +++ + G+
Sbjct: 61 KNVTVVQTGCIGLCKYEPIVEVYEPNKEKVTYVRMTPEKVVKVVTEHLVNGKP 113
>gi|172035595|ref|YP_001802096.1| ferredoxin-like protein [Cyanothece sp. ATCC 51142]
gi|171697049|gb|ACB50030.1| ferredoxin-like protein [Cyanothece sp. ATCC 51142]
Length = 172
Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 89 PVGTRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQ---KPLHRNSDGTLSWEEVECQG 142
R T C + + + ++ + + + + C
Sbjct: 36 NQIQRHLFLCADQTKPKCCPKATSLEAWDYLKRRLKELKLDQVTEAKPSCIFRTKANCLR 95
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
C++ P++++ D Y TPE +E II
Sbjct: 96 VCMDGPILVLYPDGVWYRQATPEVIERIIQE 126
>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
Length = 622
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG----TLSWEEVECQGA 143
V VCG T C+ G K+ E + G + C G
Sbjct: 18 KKQSADCRVLVCGGTGCLASGSGKIYEKLKELTKDHTGVEVKIGEEIAHTKVMKSGCHGF 77
Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168
C P+V I Y + E EEI
Sbjct: 78 CEMGPLVRIEPYNYLYIKVKLEDCEEI 104
>gi|91070005|gb|ABE10931.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC3046]
Length = 113
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 107 RGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPE 163
+K E + + + + + + +C C N P++++ D YE ++PE
Sbjct: 22 NEGQKTWECLKKTLKKFENDPCTKNVHILRSKADCLRICKNGPILLVWPDGIWYEKVSPE 81
Query: 164 RLEEII-DAFSTGQG 177
++ EI G+
Sbjct: 82 KISEIFTSHIINGKP 96
>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
flavoprotein [Halanaerobium praevalens DSM 2228]
Length = 601
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ R+HV +C T C+ G + L E ++ K + G + E C G C
Sbjct: 1 MKDSIYRSHVLICTGTGCVSSGAKTLEESLEEELAAK----DLSGEIKIVETGCHGFCEK 56
Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA-FSTGQ 176
P++++ + Y ++ E + EI++ G+
Sbjct: 57 GPIMIVYPEGVFYCEVQAEDVPEIVEEHLLKGR 89
>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 604
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 134 SWEEVECQGACVNAPMVMIGKD----TYEDLTPERLEEIIDA-FSTGQG 177
S +E C G C P+V + + Y D+ ++ ++II+ GQ
Sbjct: 34 SVQETGCVGMCFKEPLVEVIDNEGRFIYGDVDEKKAQQIIEDHLDNGQP 82
>gi|123968851|ref|YP_001009709.1| ferredoxin [Prochlorococcus marinus str. AS9601]
gi|123198961|gb|ABM70602.1| Ferredoxin [Prochlorococcus marinus str. AS9601]
Length = 113
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 107 RGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPE 163
+K E + + + + + + +C C N P+++I D YE ++PE
Sbjct: 22 NEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVCKNGPILLIWPDGIWYEKVSPE 81
Query: 164 RLEEII-DAFSTGQG 177
++ EI G+
Sbjct: 82 KISEIFTSHIINGKP 96
>gi|302871902|ref|YP_003840538.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574761|gb|ADL42552.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis
OB47]
Length = 129
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 131 GTLSWEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEII-DAFSTGQG 177
++ + C G C P+V + K TY +TPE++ I+ + G+
Sbjct: 61 KNITVVQTGCIGLCKYEPIVEVYEPNKEKVTYVKMTPEKVTRIVAEHLVNGKP 113
>gi|119356125|ref|YP_910769.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
gi|119353474|gb|ABL64345.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
Length = 100
Score = 35.4 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + AHV VC + ++ + ++ Q + G + C
Sbjct: 1 MQKQREMPYVAHVFVCTNDRGGEKKSCADNNSQLTKARLKQAVDEKGWRGKVRISTSGCM 60
Query: 142 GACVNA--PMVMIGKDTYEDLTPERLEEIIDAF 172
G C N M+ K + + P+ ++EI+ A
Sbjct: 61 GLCSNGSHVMIYPQKVWFSGVLPDDVDEIVSAI 93
>gi|193214739|ref|YP_001995938.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110]
gi|193088216|gb|ACF13491.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110]
Length = 102
Score = 35.4 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 91 GTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ H+ +C + C + +L++ +++ + + + C
Sbjct: 3 KPKHHLLICASFRAGGTPQGICYKKESLQLMQYLEDELSDRGMT-----DVMISTTGCLN 57
Query: 143 ACVNAPMVMIGKD--TYEDL-TPERLEEIIDAFSTGQGDT 179
C P++++ + Y + E ++EI+DA GQ
Sbjct: 58 VCERGPIIVVYPEGYWYGQIENEEMIDEILDALEEGQAKE 97
>gi|302387720|ref|YP_003823542.1| hypothetical protein Closa_3392 [Clostridium saccharolyticum WM1]
gi|302198348|gb|ADL05919.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 125
Score = 35.4 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEI 168
+ + S + C G C P+V I K TY +TPE+ EE+
Sbjct: 50 LSNLVQENHMTDRFSVTQTGCIGLCQYEPIVEILEPGKDKITYIKMTPEKAEEV 103
>gi|125995227|dbj|BAF47142.1| hypothetical protein [Gloeothece sp. KO68DGA]
Length = 197
Score = 35.4 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
+ + +C + C RG +L + + + + ++ E+ CQ C A
Sbjct: 106 KTCPKKGKILLCNKSDCAKRGGRELYQTLQKTL----CNLGLQDHVTIEKTSCQKRCGKA 161
Query: 148 PM--VMIGKDTYEDLTPERLEEIIDA 171
P +M GK P+ + E+++
Sbjct: 162 PNLILMPGKARLSKPNPKTISELLED 187
>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[Ruminococcus sp. SR1/5]
Length = 623
Score = 35.4 bits (80), Expect = 5.4, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLH 126
M+ + ++ + + + G V VC T C+ G +K+ E I +
Sbjct: 1 MSITSMEDLKNKQAEVKKNLDGYTCRVLVCSGTGCIASGAQKIYEEMSRLCEGIEGVAVE 60
Query: 127 RNSDG-TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
D + + CQG C P++ I Y + + EI++
Sbjct: 61 MQKDVPHVGIVKTGCQGLCELGPLMRIEPYDYQYVHVQVDDCREIVEK 108
>gi|115378568|ref|ZP_01465723.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1]
gi|310820735|ref|YP_003953093.1| NADH dehydrogenase I chain f [Stigmatella aurantiaca DW4/3-1]
gi|115364440|gb|EAU63520.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1]
gi|309393807|gb|ADO71266.1| NADH dehydrogenase I chain F [Stigmatella aurantiaca DW4/3-1]
Length = 118
Score = 35.4 bits (80), Expect = 5.4, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 26/102 (25%)
Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
R + VC C G + + ++ Q+ L C G C P V+
Sbjct: 2 KRYRLSVCKGMDCKANGSNAVFAAAQEELTQRGLAPR----CEAYRGGCYGFCHMGPNVV 57
Query: 152 IGKD----------------------TYEDLTPERLEEIIDA 171
I +D Y + PER+ +I
Sbjct: 58 IREDTGRKKDPLSPEDYQLMGWPGEVYYSRMNPERMRRVIAE 99
>gi|91070078|gb|ABE11003.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC612]
Length = 113
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 107 RGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPE 163
+K E + + + + + + +C C N P++++ D YE ++PE
Sbjct: 22 NEGQKTWECLKKTLKKFQNDPCTKNVHILRSKADCLRICKNGPILLVWPDGIWYEKVSPE 81
Query: 164 RLEEII-DAFSTGQG 177
++ EI G+
Sbjct: 82 KISEIFTSHIINGRP 96
>gi|144899663|emb|CAM76527.1| ferredoxin 2fe-2s [Magnetospirillum gryphiswaldense MSR-1]
Length = 113
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG E L + + +K + G + C C P+++I + Y
Sbjct: 30 SCAARGSEPLRDYLKAAAKKKGV-----GGVRVNAAGCLDRCELGPVLVIYPEGIWYGFN 84
Query: 161 TPERLEEIID 170
+ E ++EIID
Sbjct: 85 SREDIDEIID 94
>gi|119485426|ref|ZP_01619754.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106]
gi|119457182|gb|EAW38308.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106]
Length = 99
Score = 35.4 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
V VC C +G +++ + D + E C G C N PMV+I
Sbjct: 8 KVLVCQNRTCRKQGSAQVLAAFQA-------EPIPD--VGIEATGCLGQCGNGPMVIILP 58
Query: 153 GKDTYEDLTPERLEEIID 170
+ Y + PE + I++
Sbjct: 59 EEVWYNRIQPEEVPTIVE 76
>gi|186680959|ref|YP_001864155.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc
punctiforme PCC 73102]
gi|186463411|gb|ACC79212.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc
punctiforme PCC 73102]
Length = 180
Score = 35.4 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MV 150
+A + VC C+ RG + L+ + + L ++ E CQ C +AP ++
Sbjct: 100 KARIMVCQKGGCLKRGGKGLLSDLEKTLCDRGLLDK----VTIEHTSCQKCCNSAPNCVL 155
Query: 151 MIGKDTYEDLTPERLEEIIDA 171
+GK Y+++ P+ + ++++
Sbjct: 156 HLGKKKYKNIHPDAIASLLES 176
>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 573
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 130 DGTLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
D + E C G C P+V++ + Y + PE + EI++
Sbjct: 14 DREVMLVETGCHGMCEMGPVVVVYPEGAFYCRVMPEDVPEIVEE 57
>gi|283782440|ref|YP_003373195.1| ferredoxin-like protein [Pirellula staleyi DSM 6068]
gi|283440893|gb|ADB19335.1| ferredoxin-like protein [Pirellula staleyi DSM 6068]
Length = 112
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 93 RAHVQVCGTTPC--MLRGCEKL--IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
H+ +C RG + E ++ ++ R G + C C P
Sbjct: 5 THHIFICTNQREKGHKRGSCDVDGEERLKSAFKKELDRRGLKGEVRANSAGCLDQCELGP 64
Query: 149 MVMIGKD--TYEDLTPERLEEIIDA 171
+++I Y ++ + + +II+
Sbjct: 65 VIVIYPQAIWYGNVQVKDVPKIIEE 89
>gi|33861699|ref|NP_893260.1| hypothetical protein PMM1143 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640067|emb|CAE19602.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 109
Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 109 CEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKD--TYEDLTPERL 165
K E + + +S + +V+C C N P+++I D YE ++PE++
Sbjct: 24 GNKTWECLKKTLKNYENDSSSRNIQIMRSKVDCLRICKNGPILLIWPDGIWYEKVSPEKV 83
Query: 166 EEI 168
EI
Sbjct: 84 SEI 86
>gi|302337815|ref|YP_003803021.1| hypothetical protein Spirs_1300 [Spirochaeta smaragdinae DSM 11293]
gi|301635000|gb|ADK80427.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 83
Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+++C + C +RG L+ + + L ++ + C C P V+I
Sbjct: 2 TIEICMGSSCYVRGNRDLLAALEQFLETEGL----SDRVALKGCLCTDCCGQGPNVIIDG 57
Query: 155 DTYEDLTPERLEEII 169
+ Y + P + +++
Sbjct: 58 EIYHEAAPGSIIDLL 72
>gi|226355612|ref|YP_002785352.1| DNA topoisomerase [Deinococcus deserti VCD115]
gi|226317602|gb|ACO45598.1| putative DNA topoisomerase (topoisomerase I) [Deinococcus deserti
VCD115]
Length = 966
Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APAGGLT 198
++LTPER EI++ G+ + G R +S PA G +
Sbjct: 829 DNLTPERALEILEE--RGKEPKKKAGKSPSRKASVKPAAGKS 868
>gi|291523454|emb|CBK81747.1| NADH dehydrogenase subunit E [Coprococcus catus GD/7]
Length = 79
Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ +C + C L+G +I+ I ++ L + + C G C N V I
Sbjct: 2 TITICIGSSCHLKGSRTIIQKLEELITERQL----NDKIELNGSFCMGECSNGVCVKIND 57
Query: 155 DTYEDLTPERL 165
+ + ++PE +
Sbjct: 58 ELFS-VSPETV 67
>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Clostridium cellulolyticum H10]
gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
[Clostridium cellulolyticum H10]
Length = 623
Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----CQGACVNAPM 149
V VC T C+ G ++ + I++K L + + E + C G C P+
Sbjct: 26 KVLVCAGTGCVAGGSLEIYNRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEMGPL 85
Query: 150 VMIGKD--TYEDLTPERLEEIIDA 171
V I + Y + E EEI++
Sbjct: 86 VRIEPENYLYLRVQIEDCEEIVNK 109
>gi|126652145|ref|ZP_01724327.1| cobalamin biosynthesis protein [Bacillus sp. B14905]
gi|126591053|gb|EAZ85164.1| cobalamin biosynthesis protein [Bacillus sp. B14905]
Length = 123
Score = 35.1 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
+ G + H+ +C + CM + E++ + R++I + L D + C G
Sbjct: 1 MTTWNLEGMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCNGR 56
Query: 144 CVNAPMVMIGK--DTYEDLTPERLEEIIDAF 172
C +A +V+ + Y + E ++
Sbjct: 57 CKDACVVIAYPQGNWYRVPSTEHARTLVQDL 87
>gi|313889054|ref|ZP_07822712.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312844927|gb|EFR32330.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 90
Score = 35.1 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 95 HVQVCGTTPCMLRGC---EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146
V +C C L G +E ++ + S L E C C
Sbjct: 2 KVTICMGARCTLMGANAIYDAVEYLQDHLCGPESELCSAENLEVEFAHCLNYCKIHNNEA 61
Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFS 173
+P+V++ + T + + +IID
Sbjct: 62 SPVVIVDDEIMLKATAQEVSAKIIDKLR 89
>gi|33865231|ref|NP_896790.1| putative ferredoxin like protein [Synechococcus sp. WH 8102]
gi|33638915|emb|CAE07212.1| putative ferredoxin like protein [Synechococcus sp. WH 8102]
Length = 114
Score = 35.1 bits (79), Expect = 6.7, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 93 RAHVQVCGTT----PCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGACVN 146
H+ +C T C + I + +G + +V+C C
Sbjct: 7 SHHLLLCATPTKAKCCDPNTGLATWNELKRLIKELGLENSDRPEGVVLRSKVDCLRICDK 66
Query: 147 APMVMIGKD--TYEDLTPERLEE 167
P++++ D Y D+T E++E
Sbjct: 67 GPILVVWPDGIWYTDVTTEKIEA 89
>gi|186686526|ref|YP_001869722.1| hypothetical protein Npun_F6517 [Nostoc punctiforme PCC 73102]
gi|186468978|gb|ACC84779.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 110
Score = 35.1 bits (79), Expect = 6.8, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
+ + V+VC C +G K+ D ++ C
Sbjct: 8 SNFPIIDQPSSSRCVRVCQNRTCKKQGAAKVFAAFTAL-------PIPD--VTVTASSCL 58
Query: 142 GACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
G C N PMV++ D Y + P + +I+
Sbjct: 59 GQCGNGPMVLVLPDMVWYSGVKPHEVSLLIEN 90
>gi|114776823|ref|ZP_01451866.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1]
gi|114552909|gb|EAU55340.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1]
Length = 105
Score = 35.1 bits (79), Expect = 7.0, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
+ H +C C L+ + ++ + L + C G C P++
Sbjct: 8 PYKRHAIMCCGKSCGEN--LPLLNYLKKRVAEAGLIMGDPDAVRVNRAGCLGVCCEGPIM 65
Query: 151 MIGKD--TYEDLTPERLEEII-DAFSTGQ 176
++ + Y L ++ I+ + F G+
Sbjct: 66 VVHPEGVWYCHLDEAGIDRIVNEHFRGGK 94
>gi|67922918|ref|ZP_00516415.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501]
gi|67855268|gb|EAM50530.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501]
Length = 197
Score = 35.1 bits (79), Expect = 7.0, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIG 153
+ +C + C RG +KL V I + + ++ ++ CQ C AP + M G
Sbjct: 116 ILICNKSDCAKRGGKKLYGVLEKTIS----NLGLEKHVTIQKTGCQKRCGKAPNMILMPG 171
Query: 154 KDTYEDLTPERLEEIIDA--FSTGQG 177
+ + P+ + +++ ++G+
Sbjct: 172 RSKHSKPNPKNIAGLLEEHYITSGKK 197
>gi|332701929|ref|ZP_08422017.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay]
gi|332552078|gb|EGJ49122.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay]
Length = 103
Score = 35.1 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK--DTYEDLT 161
C +G L++ + + + DG + C C + P++++ Y+ +
Sbjct: 25 CHKKGSTGLLQYIEEGLLDRGI----DGLVCA--TGCMKQCDDGPIMVVYPQGHWYKAVD 78
Query: 162 PE-RLEEIIDAFSTGQ 176
E +++EI+DA G+
Sbjct: 79 SEGKIDEILDACENGE 94
>gi|225568914|ref|ZP_03777939.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM
15053]
gi|225162413|gb|EEG75032.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM
15053]
Length = 81
Score = 35.1 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
VQ+C + C LRG E +++ + ++ L + S+ C GAC V IG+
Sbjct: 2 KVQICIGSSCHLRGSETIVKTFNRLLKEEKLEAQVELCGSF----CMGACSKGVSVKIGE 57
Query: 155 DTYEDLTPERLEE 167
+ Y + PE E+
Sbjct: 58 NIY-HVKPEDAED 69
>gi|312127641|ref|YP_003992515.1| hypothetical protein Calhy_1429 [Caldicellulosiruptor
hydrothermalis 108]
gi|312793479|ref|YP_004026402.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876006|ref|ZP_07735995.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311777660|gb|ADQ07146.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
gi|311797204|gb|EFR13544.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
6A]
gi|312180619|gb|ADQ40789.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 129
Score = 35.1 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 131 GTLSWEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEII-DAFSTGQG 177
++ + C G C P+V + K TY +TPE++ +++ + G+
Sbjct: 61 KNVTVVQTGCIGLCKYEPIVEVYEPNKEKVTYVKMTPEKVLKVVAEHLVNGKP 113
>gi|323706139|ref|ZP_08117708.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323534583|gb|EGB24365.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 81
Score = 35.1 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
+ VC + C L+G +I + I + D + + C G C+ A V I
Sbjct: 2 VITVCVGSSCHLKGSYDVINKLKEMIK---NYGIEDK-VELKADFCMGNCLRAVSVKIDD 57
Query: 155 DTYEDLTPERLEEIIDAFSTGQGD 178
+ P +E+ + G+
Sbjct: 58 GKCLSVKPNNVEKFFKEYVLGELK 81
>gi|296533445|ref|ZP_06896028.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
gi|296266225|gb|EFH12267.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
Length = 117
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--TYEDL 160
C RG E ++ + + G + + C C P+++I + Y
Sbjct: 30 SCAARGS----EALKDYMKARAKELGLKG-IRVNQAGCLDRCEFGPVIVIYPEGIWYRAE 84
Query: 161 TPERLEEIIDA 171
T E ++EI+ A
Sbjct: 85 TREDVDEILQA 95
>gi|328469265|gb|EGF40211.1| MerR family transcriptional regulator [Vibrio parahaemolyticus
10329]
Length = 270
Score = 34.7 bits (78), Expect = 8.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
+ +++RYP S VI L AQ Q
Sbjct: 236 AKQVEAFKALLARYPEQVQCSEVIEKLHLAQTQ 268
>gi|260901114|ref|ZP_05909509.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AQ4037]
gi|308109396|gb|EFO46936.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AQ4037]
Length = 270
Score = 34.7 bits (78), Expect = 8.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
+ +++RYP S VI L AQ Q
Sbjct: 236 AKQVEAFKALLARYPEQVQCSEVIEKLHLAQTQ 268
>gi|153835932|ref|ZP_01988599.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AQ3810]
gi|149750686|gb|EDM61431.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AQ3810]
Length = 270
Score = 34.7 bits (78), Expect = 8.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
+ +++RYP S VI L AQ Q
Sbjct: 236 AKQVEAFKALLARYPEQVQCSEVIEKLHLAQTQ 268
>gi|28901327|ref|NP_800982.1| MerR family transcriptional regulator [Vibrio parahaemolyticus RIMD
2210633]
gi|260362884|ref|ZP_05775753.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
K5030]
gi|260880172|ref|ZP_05892527.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AN-5034]
gi|260895289|ref|ZP_05903785.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
Peru-466]
gi|28809874|dbj|BAC62815.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
RIMD 2210633]
gi|308085785|gb|EFO35480.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
Peru-466]
gi|308092619|gb|EFO42314.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
AN-5034]
gi|308112120|gb|EFO49660.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
K5030]
Length = 270
Score = 34.7 bits (78), Expect = 8.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
+ +++RYP S VI L AQ Q
Sbjct: 236 AKQVEAFKALLARYPEQVQCSEVIEKLHLAQTQ 268
>gi|298708046|emb|CBJ30399.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 274
Score = 34.7 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
V VC T C G ++ R G + E CQG C P ++
Sbjct: 44 TVHVCTNTSCRKAGSRWTVDTFRA--------FAPPGDIKVLETGCQGRCGLGPNILTRP 95
Query: 153 GKDTYEDL-TPERLEEIID 170
++ Y + P + II+
Sbjct: 96 SEEVYNGVAQPATVAAIIE 114
>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
27755]
gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
27755]
Length = 625
Score = 34.7 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEV 138
Q + VCG T C+ G +K+ + G + ++
Sbjct: 17 QEKRNKETCKILVCGGTGCLAGGSDKIFDRFSELTAGMDHVEVRIGAEIAHGEHVGVKKS 76
Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
C G C P+V I Y + E EEI +
Sbjct: 77 GCHGFCEMGPLVRIEPYNYLYLKVKLEDCEEIFEK 111
>gi|160878254|ref|YP_001557222.1| hypothetical protein Cphy_0093 [Clostridium phytofermentans ISDg]
gi|160426920|gb|ABX40483.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
Length = 80
Score = 34.7 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C + C L+G ++I I + C G CV + +
Sbjct: 2 VVTICVGSSCHLKGSREIITRLETLIT----ENKLKSKVELNGAFCMGQCVKGVCIKLDG 57
Query: 155 DTYEDLTPERLE-----EIIDAF 172
+ + LTP+ + EI+
Sbjct: 58 EPFS-LTPKDTDSFFHGEILRRL 79
>gi|331669372|ref|ZP_08370218.1| conserved hypothetical protein [Escherichia coli TA271]
gi|331063040|gb|EGI34953.1| conserved hypothetical protein [Escherichia coli TA271]
Length = 750
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
++++F ES + +++ Y + V L + + + + + +
Sbjct: 265 ANWAFKFESMEKIAKILDNY---KPIDMVRASLWIFNDWDSDIEESIENAGGIFSSVEEM 321
Query: 74 RVLEIATFYTQFQLSPVGT-----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
R ++ Y LS V + EKL ++ I+ K
Sbjct: 322 RSEKLREIYFTLGLSGVKDLFQQVNNVFIAARHISALSLDEEKLNDLFVMLINNKKNIDE 381
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G L VEC GA + + K +TP+R +I+ +
Sbjct: 382 VCGLLMQYGVECFGAEWLNKIKVYFKQF--KITPDRAGKILASLRD 425
>gi|218696245|ref|YP_002403912.1| hypothetical protein EC55989_2910 [Escherichia coli 55989]
gi|218352977|emb|CAU98777.1| conserved hypothetical protein [Escherichia coli 55989]
Length = 1248
Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
++++F ES + +++ Y + V L + + + + + +
Sbjct: 763 ANWAFKFESMEKIAKILDNY---KPIDMVRASLWIFNDWDSDIEESIENAGGIFSSVEEM 819
Query: 74 RVLEIATFYTQFQLSPVGT-----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
R ++ Y LS V + EKL ++ I+ K
Sbjct: 820 RSEKLREIYFTLGLSGVKDLFQQVNNVFIAARHISALSLDEEKLNDLFVMLINNKKNIDE 879
Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
G L VEC GA + + K +TP+R +I+ +
Sbjct: 880 VCGLLMQYGVECFGAEWLNKIKVYFKQF--KITPDRAGKILASLRD 923
>gi|257463868|ref|ZP_05628254.1| hypothetical protein FuD12_08469 [Fusobacterium sp. D12]
Length = 73
Score = 34.7 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
EEV C G C P V I Y + E++E +
Sbjct: 37 LEEVRCFGQCKKGPNVKIDGQMYHFMDLEKVEWFLKK 73
>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
Length = 599
Score = 34.7 bits (78), Expect = 9.9, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
V +C T C+ +G ++ E + +I + L N++ + + C G C P++ I
Sbjct: 6 TVNICCGTGCLAKGSMEVYEEMKAQIAK--LGANAEVNVKLKATGCDGLCEKGPVLKIYP 63
Query: 155 D 155
D
Sbjct: 64 D 64
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.132 0.362
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,718,639,936
Number of Sequences: 14124377
Number of extensions: 63657773
Number of successful extensions: 297933
Number of sequences better than 10.0: 2769
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 783
Number of HSP's that attempted gapping in prelim test: 292558
Number of HSP's gapped (non-prelim): 2918
length of query: 218
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 85
effective length of database: 2,964,251,489
effective search space: 251961376565
effective search space used: 251961376565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 78 (34.7 bits)