BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] (218 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 218 Score = 454 bits (1169), Expect = e-130, Method: Compositional matrix adjust. Identities = 218/218 (100%), Positives = 218/218 (100%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA Sbjct: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI Sbjct: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 24.6 bits (52), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP-ERLEEIIDA 171 R DG L E+E N ++++G Y + ER I D+ Sbjct: 154 RKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS 199 >gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] Length = 345 Score = 23.1 bits (48), Expect = 4.0, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 13/16 (81%) Query: 159 DLTPERLEEIIDAFST 174 +++PE LE+IID F + Sbjct: 64 EISPEELEDIIDEFES 79 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 21.9 bits (45), Expect = 8.3, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 165 LEEIIDAFST-GQGDTIRPGPQIDRISSAPAGGLTS 199 L+ ++ F G+ +RPGP I PA G+ S Sbjct: 339 LKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKS 374 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.132 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,297 Number of Sequences: 1233 Number of extensions: 5172 Number of successful extensions: 14 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 5 length of query: 218 length of database: 328,796 effective HSP length: 70 effective length of query: 148 effective length of database: 242,486 effective search space: 35887928 effective search space used: 35887928 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 36 (18.5 bits)