BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (218 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 218

 Score =  454 bits (1169), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA
Sbjct: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI
Sbjct: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI
Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS
Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218


>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 433

 Score = 24.6 bits (52), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP-ERLEEIIDA 171
           R  DG L   E+E      N  ++++G   Y  +   ER   I D+
Sbjct: 154 RKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS 199


>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 345

 Score = 23.1 bits (48), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 159 DLTPERLEEIIDAFST 174
           +++PE LE+IID F +
Sbjct: 64  EISPEELEDIIDEFES 79


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 21.9 bits (45), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 165 LEEIIDAFST-GQGDTIRPGPQIDRISSAPAGGLTS 199
           L+ ++  F   G+   +RPGP I      PA G+ S
Sbjct: 339 LKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKS 374


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,297
Number of Sequences: 1233
Number of extensions: 5172
Number of successful extensions: 14
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 328,796
effective HSP length: 70
effective length of query: 148
effective length of database: 242,486
effective search space: 35887928
effective search space used: 35887928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)