Query gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 32
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 23:34:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780857.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4010 Uncharacterized protei 32.6 22 0.00056 18.5 1.3 23 7-29 10-32 (170)
2 pfam06940 DUF1287 Domain of un 26.2 32 0.00083 17.7 1.2 28 3-30 34-62 (164)
3 COG3738 Uncharacterized protei 19.8 55 0.0014 16.6 1.3 26 4-29 69-95 (200)
4 pfam08501 Shikimate_dh_N Shiki 13.0 69 0.0018 16.1 0.4 14 10-23 48-61 (83)
5 COG5579 Uncharacterized conser 11.9 63 0.0016 16.3 -0.0 27 2-28 76-102 (143)
6 TIGR03438 probable methyltrans 9.8 1.2E+02 0.0031 15.0 0.8 26 3-28 1-26 (301)
7 PRK11037 hypothetical protein; 9.2 1.4E+02 0.0035 14.7 0.9 19 2-20 21-39 (83)
8 TIGR03202 pucB xanthine dehydr 9.0 2E+02 0.0051 14.0 1.7 24 8-31 132-155 (190)
9 KOG1061 consensus 9.0 2.2E+02 0.0056 13.8 2.1 31 1-31 47-77 (734)
10 KOG3906 consensus 8.9 1.6E+02 0.0042 14.4 1.2 17 16-32 349-365 (399)
No 1
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.65 E-value=22 Score=18.49 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=17.5
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88511234742132999998653
Q gi|254780857|r 7 DVVNGMRGNDVEMPYKVFEDLRN 29 (32)
Q Consensus 7 dvvngmrgndvempykvfedlrn 29 (32)
.++.-.|..+++.|-.||||||-
T Consensus 10 El~teLr~Rg~~VP~~V~E~lRl 32 (170)
T COG4010 10 ELLTELRKRGVDVPTSVTEDLRL 32 (170)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999997588886889999999
No 2
>pfam06940 DUF1287 Domain of unknown function (DUF1287). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. This family is related to pfam00877.
Probab=26.17 E-value=32 Score=17.71 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=21.9
Q ss_pred HHHHHHH-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6998885-112347421329999986531
Q gi|254780857|r 3 EFCTDVV-NGMRGNDVEMPYKVFEDLRNY 30 (32)
Q Consensus 3 efctdvv-ngmrgndvempykvfedlrny 30 (32)
-.||||| -..|..+....-.|.||.++.
T Consensus 34 GVCTDVViRA~R~~g~DLQ~lVheDm~~n 62 (164)
T pfam06940 34 GVCTDVVIRAYRDQGYDLQKLVHEDMRKN 62 (164)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 74288999999984976899999999979
No 3
>COG3738 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=19.77 E-value=55 Score=16.63 Aligned_cols=26 Identities=35% Similarity=0.735 Sum_probs=22.1
Q ss_pred HHHHHH-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 998885-11234742132999998653
Q gi|254780857|r 4 FCTDVV-NGMRGNDVEMPYKVFEDLRN 29 (32)
Q Consensus 4 fctdvv-ngmrgndvempykvfedlrn 29 (32)
.|+||| ...|+.++...-.|.||.+.
T Consensus 69 VCsDVvIRAlR~q~vDLQk~VheDMk~ 95 (200)
T COG3738 69 VCSDVVIRALRSQQVDLQKLVHEDMKK 95 (200)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 308999999875353389998899999
No 4
>pfam08501 Shikimate_dh_N Shikimate dehydrogenase substrate binding domain. This domain is the substrate binding domain of shikimate dehydrogenase.
Probab=12.98 E-value=69 Score=16.15 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=11.8
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 11234742132999
Q gi|254780857|r 10 NGMRGNDVEMPYKV 23 (32)
Q Consensus 10 ngmrgndvempykv 23 (32)
.+.+|-.|.||||.
T Consensus 48 ~~~~G~nVT~P~K~ 61 (83)
T pfam08501 48 LGFRGLNVTIPHKE 61 (83)
T ss_pred CCCCEEEECHHHHH
T ss_conf 89987998889999
No 5
>COG5579 Uncharacterized conserved protein [Function unknown]
Probab=11.89 E-value=63 Score=16.34 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 469988851123474213299999865
Q gi|254780857|r 2 IEFCTDVVNGMRGNDVEMPYKVFEDLR 28 (32)
Q Consensus 2 iefctdvvngmrgndvempykvfedlr 28 (32)
+.-||+.||+.-|-..+--+.--.|+.
T Consensus 76 ~~ECt~~vn~v~grs~~~iFG~pddlK 102 (143)
T COG5579 76 LHECTGLVNQVQGRSIEEIFGPPDDLK 102 (143)
T ss_pred HHHHHHHHHHHCCCCHHHHCCCHHHHH
T ss_conf 999999999874888999748868878
No 6
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=9.78 E-value=1.2e+02 Score=15.02 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=21.8
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 69988851123474213299999865
Q gi|254780857|r 3 EFCTDVVNGMRGNDVEMPYKVFEDLR 28 (32)
Q Consensus 3 efctdvvngmrgndvempykvfedlr 28 (32)
+|-.||+.|+....-.+|-|.|-|-|
T Consensus 1 d~~~dv~~GL~~~~k~lp~k~~YD~~ 26 (301)
T TIGR03438 1 DLRRDVLAGLTQSPKTLPPKYFYDAR 26 (301)
T ss_pred CHHHHHHHHHCCCCCCCCCHHCCCCH
T ss_conf 96899988637799989807501562
No 7
>PRK11037 hypothetical protein; Provisional
Probab=9.17 E-value=1.4e+02 Score=14.74 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=14.1
Q ss_pred HHHHHHHHCCCCCCCCCCH
Q ss_conf 4699888511234742132
Q gi|254780857|r 2 IEFCTDVVNGMRGNDVEMP 20 (32)
Q Consensus 2 iefctdvvngmrgndvemp 20 (32)
|.--.|-..|||.++||-.
T Consensus 21 I~eHddyl~Gm~a~~Veqk 39 (83)
T PRK11037 21 IREHEDYLAGMRATGVEQK 39 (83)
T ss_pred HHHHHHHHCCCCCCCCEEE
T ss_conf 9977888543212651134
No 8
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=9.02 E-value=2e+02 Score=13.96 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.2
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 851123474213299999865313
Q gi|254780857|r 8 VVNGMRGNDVEMPYKVFEDLRNYS 31 (32)
Q Consensus 8 vvngmrgndvempykvfedlrnys 31 (32)
..+|.+||-|-.|-+.|+.|.+.+
T Consensus 132 ~~~g~~G~Pvlf~~~~f~~L~~l~ 155 (190)
T TIGR03202 132 SFKGKPRPPILFSKSLFPKLKALK 155 (190)
T ss_pred EECCCCCCCEEECHHHHHHHHHCC
T ss_conf 628963698897799999988378
No 9
>KOG1061 consensus
Probab=9.02 E-value=2.2e+02 Score=13.78 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=26.7
Q ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9469988851123474213299999865313
Q gi|254780857|r 1 MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYS 31 (32)
Q Consensus 1 miefctdvvngmrgndvempykvfedlrnys 31 (32)
|-..|.||++-|.-.|+|.---|+.-+.||.
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa 77 (734)
T KOG1061 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYA 77 (734)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 6765178873125377037778899998752
No 10
>KOG3906 consensus
Probab=8.87 E-value=1.6e+02 Score=14.38 Aligned_cols=17 Identities=53% Similarity=0.614 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 42132999998653139
Q gi|254780857|r 16 DVEMPYKVFEDLRNYSS 32 (32)
Q Consensus 16 dvempykvfedlrnyss 32 (32)
.|.-.||||-||-|.|.
T Consensus 349 TvSDRYKVFlDLFNLST 365 (399)
T KOG3906 349 TVSDRYKVFLDLFNLST 365 (399)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 54357899999862254
Done!