Query gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 32
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:01:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780857.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 16.0 56 0.0024 15.6 1.8 19 11-29 1-19 (75)
2 3dxe_B Amyloid beta A4 protein 14.9 35 0.0015 16.5 0.5 22 8-29 13-35 (35)
3 1cl8_A Protein (endonuclease); 9.1 1.3E+02 0.0055 13.8 2.0 20 12-31 137-156 (276)
4 2zyz_A Putative uncharacterize 6.2 1.5E+02 0.0063 13.5 1.1 17 13-29 17-34 (116)
5 2bw2_A Bypass of forespore C; 5.9 1.9E+02 0.0082 13.0 1.8 27 6-32 114-140 (140)
6 3m92_A Protein YCIN; DUF2498, 5.5 1.3E+02 0.0057 13.8 0.5 18 2-19 43-60 (107)
7 3ajv_B TRNA-splicing endonucle 4.6 2.4E+02 0.01 12.5 1.3 15 16-30 94-108 (186)
8 2k9p_A Pheromone alpha factor 4.5 2.2E+02 0.0094 12.7 1.0 18 14-31 1-18 (80)
9 3ia4_A Dihydrofolate reductase 4.3 1.2E+02 0.005 14.0 -0.5 21 10-30 12-32 (162)
10 2d5c_A AROE, shikimate 5-dehyd 4.3 1.4E+02 0.0058 13.7 -0.1 20 4-23 46-65 (263)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.01 E-value=56 Score=15.55 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=15.3
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 1234742132999998653
Q gi|254780857|r 11 GMRGNDVEMPYKVFEDLRN 29 (32)
Q Consensus 11 gmrgndvempykvfedlrn 29 (32)
||.|..-+.-+.||+|||.
T Consensus 1 ~~~~~s~q~d~qvlh~Lrq 19 (75)
T 2dae_A 1 GSSGSSGQIDFQVLHDLRQ 19 (75)
T ss_dssp CCCSCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 9877665121999999998
No 2
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=14.89 E-value=35 Score=16.53 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=16.3
Q ss_pred HHCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 8511234742132-999998653
Q gi|254780857|r 8 VVNGMRGNDVEMP-YKVFEDLRN 29 (32)
Q Consensus 8 vvngmrgndvemp-ykvfedlrn 29 (32)
-+..|.-|.-|-| ||-||...|
T Consensus 13 H~a~MQ~nGYENPTYkyfe~~qn 35 (35)
T 3dxe_B 13 HLSKMQQNGYENPTYKFFEQMQN 35 (35)
T ss_dssp HHHHHHHTCEECHHHHHHHHC--
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 99999862676716899987439
No 3
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=9.09 E-value=1.3e+02 Score=13.79 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 23474213299999865313
Q gi|254780857|r 12 MRGNDVEMPYKVFEDLRNYS 31 (32)
Q Consensus 12 mrgndvempykvfedlrnys 31 (32)
-+||.+|-.+|-+..+|||-
T Consensus 137 aaGNAIER~~KNi~e~~n~m 156 (276)
T 1cl8_A 137 AAGNAIERSHKNISEIANFM 156 (276)
T ss_dssp CCCCGGGGHHHHHHHHHHHT
T ss_pred HCCCHHHHHHCCHHHHHHHH
T ss_conf 31108888642699999998
No 4
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA processing, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=6.15 E-value=1.5e+02 Score=13.52 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=11.3
Q ss_pred CCCCC-CCHHHHHHHHHH
Q ss_conf 34742-132999998653
Q gi|254780857|r 13 RGNDV-EMPYKVFEDLRN 29 (32)
Q Consensus 13 rgndv-empykvfedlrn 29 (32)
||+.. ++-|.|+.|||+
T Consensus 17 ~~s~~d~l~~~VYrDLR~ 34 (116)
T 2zyz_A 17 RGSHMDVLQEQVFKDLKS 34 (116)
T ss_dssp ----CCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 574036789999999997
No 5
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=5.86 E-value=1.9e+02 Score=12.99 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.3
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 888511234742132999998653139
Q gi|254780857|r 6 TDVVNGMRGNDVEMPYKVFEDLRNYSS 32 (32)
Q Consensus 6 tdvvngmrgndvempykvfedlrnyss 32 (32)
..+-+|++-++.+--+.+.|+++.|+.
T Consensus 114 e~L~~GI~~~s~eEa~~iLE~~~syAg 140 (140)
T 2bw2_A 114 KNLLKGIPFRTKAEFEDVIEHMKTYSG 140 (140)
T ss_dssp HHHHHCCSCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999889862999999999997676409
No 6
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=5.46 E-value=1.3e+02 Score=13.75 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 469988851123474213
Q gi|254780857|r 2 IEFCTDVVNGMRGNDVEM 19 (32)
Q Consensus 2 iefctdvvngmrgndvem 19 (32)
|.--.|...||+.++||-
T Consensus 43 I~~HeDyl~GM~a~~Veq 60 (107)
T 3m92_A 43 IREHEDTLAGIEATGVTQ 60 (107)
T ss_dssp HHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHCCCEECEEEE
T ss_conf 986687746634140344
No 7
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix}
Probab=4.58 E-value=2.4e+02 Score=12.55 Aligned_cols=15 Identities=33% Similarity=0.704 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 421329999986531
Q gi|254780857|r 16 DVEMPYKVFEDLRNY 30 (32)
Q Consensus 16 dvempykvfedlrny 30 (32)
+...-|.||.|||+-
T Consensus 94 ~F~~~y~VY~dLr~r 108 (186)
T 3ajv_B 94 RFSMLYNIYRDLRER 108 (186)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 289999999999978
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=4.45 E-value=2.2e+02 Score=12.70 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 474213299999865313
Q gi|254780857|r 14 GNDVEMPYKVFEDLRNYS 31 (32)
Q Consensus 14 gndvempykvfedlrnys 31 (32)
||+-..++..++++-|.+
T Consensus 1 gn~t~vtF~~l~~~v~~~ 18 (80)
T 2k9p_A 1 GNGSTITFDELQGLVNST 18 (80)
T ss_dssp CCCCCSCTHHHHHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHH
T ss_conf 998475699999999724
No 9
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Probab=4.31 E-value=1.2e+02 Score=14.00 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=15.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 112347421329999986531
Q gi|254780857|r 10 NGMRGNDVEMPYKVFEDLRNY 30 (32)
Q Consensus 10 ngmrgndvempykvfedlrny 30 (32)
||.-|.+-.||++.=|||+.+
T Consensus 12 n~~IG~~~~lPW~~~~Dl~~F 32 (162)
T 3ia4_A 12 NRVIGLDNKMPWHLPAELQLF 32 (162)
T ss_dssp GGEEEBTTBCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHH
T ss_conf 994868996274188999999
No 10
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: SKM; 1.65A {Thermus thermophilus HB8} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=4.30 E-value=1.4e+02 Score=13.71 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=13.6
Q ss_pred HHHHHHCCCCCCCCCCHHHH
Q ss_conf 99888511234742132999
Q gi|254780857|r 4 FCTDVVNGMRGNDVEMPYKV 23 (32)
Q Consensus 4 fctdvvngmrgndvempykv 23 (32)
|....-.+.+|-.|.||||.
T Consensus 46 ~i~~~~~~~~G~~VT~P~K~ 65 (263)
T 2d5c_A 46 RLKEVRRAFRGVNLTLPLKE 65 (263)
T ss_dssp HHHHHHHHCSEEEECTTCTT
T ss_pred HHHHHHHCCCCEEECHHHHH
T ss_conf 99999847776384688999
Done!