RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62] (32 letters) >gnl|CDD|36279 KOG1061, KOG1061, KOG1061, Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]. Length = 734 Score = 25.7 bits (56), Expect = 3.3 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 1 MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32 + DVV M+ D+E+ V+ L NY+ Sbjct: 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK 78 >gnl|CDD|33770 COG4010, COG4010, Uncharacterized protein conserved in archaea [Function unknown]. Length = 170 Score = 24.2 bits (52), Expect = 7.5 Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 6 TDVVNGMRGNDVEMPYKVFEDLR 28 +++ +R V++P V EDLR Sbjct: 9 VELLTELRKRGVDVPTSVTEDLR 31 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.139 0.416 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 389,476 Number of extensions: 8442 Number of successful extensions: 20 Number of sequences better than 10.0: 1 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 2 Length of query: 32 Length of database: 6,263,737 Length adjustment: 7 Effective length of query: 25 Effective length of database: 6,112,474 Effective search space: 152811850 Effective search space used: 152811850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.3 bits)