RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780857|ref|YP_003065270.1| hypothetical protein
CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62]
         (32 letters)



>gnl|CDD|36279 KOG1061, KOG1061, KOG1061, Vesicle coat complex AP-1/AP-2/AP-4,
          beta subunit [Intracellular trafficking, secretion, and
          vesicular transport].
          Length = 734

 Score = 25.7 bits (56), Expect = 3.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1  MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32
          +     DVV  M+  D+E+   V+  L NY+ 
Sbjct: 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK 78


>gnl|CDD|33770 COG4010, COG4010, Uncharacterized protein conserved in archaea
          [Function unknown].
          Length = 170

 Score = 24.2 bits (52), Expect = 7.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 6  TDVVNGMRGNDVEMPYKVFEDLR 28
           +++  +R   V++P  V EDLR
Sbjct: 9  VELLTELRKRGVDVPTSVTEDLR 31


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 389,476
Number of extensions: 8442
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 32
Length of database: 6,263,737
Length adjustment: 7
Effective length of query: 25
Effective length of database: 6,112,474
Effective search space: 152811850
Effective search space used: 152811850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)