RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62] (32 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.8 bits (64), Expect = 0.33 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 7/25 (28%) Query: 13 RGNDVEMPYKVF-----EDLRNYSS 32 D+++P V+ DLR S Sbjct: 451 NAKDIQIP--VYDTFDGSDLRVLSG 473 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.139 0.416 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 285,965 Number of extensions: 5818 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 1 Length of query: 32 Length of database: 5,693,230 Length adjustment: 6 Effective length of query: 26 Effective length of database: 5,547,766 Effective search space: 144241916 Effective search space used: 144241916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.4 bits)