BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780857|ref|YP_003065270.1| hypothetical protein
CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62]
         (32 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 32

 Score = 69.3 bits (168), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32
          MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS
Sbjct: 1  MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32


>gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 175

 Score = 24.6 bits (52), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 3  EFCTDVVNGMRGNDVEMPYKVFEDLR 28
          ++CT+V++ +R  D     KV EDL+
Sbjct: 47 QYCTNVIDSVRERDYLSQKKVLEDLQ 72


>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 176

 Score = 20.4 bits (41), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 10 NGMRGNDVEMPYKVFEDLRNYSS 32
          N + G+   MP+K+  DL+ + S
Sbjct: 15 NNVIGSCGGMPWKISSDLKRFKS 37


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,435
Number of Sequences: 1233
Number of extensions: 341
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 32
length of database: 328,796
effective HSP length: 6
effective length of query: 26
effective length of database: 321,398
effective search space:  8356348
effective search space used:  8356348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)