BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62] (32 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780857|ref|YP_003065270.1| hypothetical protein CLIBASIA_03760 [Candidatus Liberibacter asiaticus str. psy62] Length = 32 Score = 69.3 bits (168), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 32/32 (100%), Positives = 32/32 (100%) Query: 1 MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32 MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS Sbjct: 1 MIEFCTDVVNGMRGNDVEMPYKVFEDLRNYSS 32 >gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] Length = 175 Score = 24.6 bits (52), Expect = 0.29, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 3 EFCTDVVNGMRGNDVEMPYKVFEDLR 28 ++CT+V++ +R D KV EDL+ Sbjct: 47 QYCTNVIDSVRERDYLSQKKVLEDLQ 72 >gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 20.4 bits (41), Expect = 5.8, Method: Composition-based stats. Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 10 NGMRGNDVEMPYKVFEDLRNYSS 32 N + G+ MP+K+ DL+ + S Sbjct: 15 NNVIGSCGGMPWKISSDLKRFKS 37 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,435 Number of Sequences: 1233 Number of extensions: 341 Number of successful extensions: 3 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of query: 32 length of database: 328,796 effective HSP length: 6 effective length of query: 26 effective length of database: 321,398 effective search space: 8356348 effective search space used: 8356348 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 31 (16.5 bits)