HHsearch alignment for GI: 254780858 and conserved domain: COG1726
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion].
Probab=96.61 E-value=0.052 Score=33.55 Aligned_cols=203 Identities=16% Similarity=0.252 Sum_probs=131.0
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC--CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999826989999999983977687571124556874235--65688619998576778486004899986258999999
Q gi|254780858|r 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 (425)
Q Consensus 32 l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~--~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~ 109 (425)
T Consensus 107 ~~~L~~l~~eeV~~~l~~sGLw--------talrtRPFsk~p~p~s~p~~iFvnamDt~Plaadp~vvi~~~s~~F~~Gl 178 (447)
T COG1726 107 LEQLAQLSLEEVRKNLIESGLW--------TALRTRPFSKVPAPDSTPRAIFVNAMDTNPLAADPEVVIAEFSEAFVVGL 178 (447)
T ss_pred HHHHHHCCHHHHHHHHHHHHHH--------HHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8887222699999887760378--------88751888778899988066433301379899973869988888999899
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999718363899815551789999999999998689977676788664069974575100110788998630899986
Q gi|254780858|r 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 (425)
Q Consensus 110 ~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~P 189 (425)
T Consensus 179 ~vlsrL~~~k--~~vcka~~~~----~~~~~-----------------~~~~~~h~f~GPhPaGl~gtHIHfi~------ 229 (447)
T COG1726 179 TVLSRLFGLK--HHVCKAAGTL----PPQEL-----------------LSNAHLHEFSGPHPAGLPGTHIHFIA------ 229 (447)
T ss_pred HHHHHHHCCE--EEEECCCCCC----CCHHH-----------------HCCEEEEECCCCCCCCCCCCEEEEEC------
T ss_conf 9999872661--8998056778----98122-----------------03503664268788898754057751------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHH
Q ss_conf 8889986227830378500028999999999960568886338987743047642678-878726893589879999998
Q gi|254780858|r 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 (425)
Q Consensus 190 r~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~ 268 (425)
T Consensus 230 ----pv~~~k~Vw----~-inyQDViaIG~LF~tG~l~----------~erVvaLAGp~v~~prlvrT~~GAsls~L~~- 289 (447)
T COG1726 230 ----PVGATKVVW----T-INYQDVIAIGKLFLTGELL----------TERVVALAGPQVNKPRLVRTVLGASLSQLTA- 289 (447)
T ss_pred ----CCCCCEEEE----E-EEHHHHHHHHHHHHCCEEE----------HHHHEECCCCCCCCCEEEEEECCCCHHHHCC-
T ss_conf ----245752799----9-5235455535452113320----------3200100367778853798632677888501-
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 6155678711004898524565653210
Q gi|254780858|r 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 (425)
Q Consensus 269 ~~GG~~~~~~~~kav~~GG~~~g~l~~~ 296 (425)
T Consensus 290 --~~l~~g~nr---lISGsvL~G~~~~~ 312 (447)
T COG1726 290 --GELKSGENR---LISGSVLTGRLAKG 312 (447)
T ss_pred --CCCCCCCCE---EEECCCCCCCCCCC
T ss_conf --355589721---88357556710168