HHsearch alignment for GI: 254780858 and conserved domain: COG1894
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=1142.99 Aligned_cols=415 Identities=60% Similarity=1.039 Sum_probs=407.2
Q ss_pred CCCHHHH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHH-HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 9620343-67551787677989999779989999998-269899999999839776875711245568742356568861
Q gi|254780858|r 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 (425)
Q Consensus 1 ~~~~~~r-~~~~~~~~~~~~l~~y~~~ggy~~l~~~l-~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~ 78 (425)
T Consensus 5 ~~~~~~r~~~~~~~~~~~~~l~~y~a~ggy~~l~kal~~m~p~~II~~Vk~SGLRGRGGAGFpTGlKWsfm~k~~~~~-k 83 (424)
T COG1894 5 FLKNQDRITFRNLGDPDPWSLDEYLARGGYEGLRKALTEMGPDEIIEEVKESGLRGRGGAGFPTGLKWSFMPKATSDQ-K 83 (424)
T ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCC-E
T ss_conf 010003579985579985549999854749999999986598999999987177777877787775211012478896-4
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 99985767784860048999862589999999999971836389981555178999999999999868997767-67886
Q gi|254780858|r 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGY 157 (425)
Q Consensus 79 yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~ 157 (425)
T Consensus 84 ylvcNADE~ePGTfkDR~ime~dPH~LIEGm~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~~GlLGknilGSgf 163 (424)
T COG1894 84 YLVCNADEGEPGTFKDRLIMEGDPHLLIEGMIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYAAGLLGKNILGSGF 163 (424)
T ss_pred EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89984898997522137877059478888899999984453368997333099999999999999980856655568875
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCC
Q ss_conf 64069974575100110788998630899986888998622783037850002899999999996056888633898774
Q gi|254780858|r 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 (425)
Q Consensus 158 ~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~ 237 (425)
T Consensus 164 dfdl~vh~GAGAYICGEETALl~SLEGkrg~PR~KPPfPa~~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s~ 243 (424)
T COG1894 164 DFDLYVHHGAGAYICGEETALLESLEGKRGQPRLKPPFPATSGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNSR 243 (424)
T ss_pred CEEEEEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44899952776324052889888742778999999898644576689855402110020289998638999844888899
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 30476426788787268935898799999986155678711004898524565653210024563342201103873466
Q gi|254780858|r 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 (425)
Q Consensus 238 Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGs 317 (425)
T Consensus 244 GTKlf~~sG~V~~pg~~E~pmG~tlrelie~~aGG~r~G~-~lKAv~pGG~s~~~l~~~~~d-~pmDydsl~~~gs~lGt 321 (424)
T COG1894 244 GTKLFSLSGHVKNPGLYEVPMGTTLRELIEDYAGGVRGGW-KLKAVQPGGPSGPCLPEELLD-TPMDYDSLAKAGSMLGT 321 (424)
T ss_pred CCEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCCCC-EEEEEEECCCCCCCCCHHHHC-CCCCHHHHHHHCCCCCC
T ss_conf 8347886111268863772178859999999568867883-468996289876667888837-87677889860546676
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 51799428652899999999999876279988523028999999999982899989999999999862236667765024
Q gi|254780858|r 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 (425)
Q Consensus 318 g~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a 397 (425)
T Consensus 322 ggiiV~d~~~~mv~~~~~~~~F~~~ESCGkCtPCReGt~w~~~il~ri~~G~~~~~dl~~L~~l~~~i~g~s~CalG~~a 401 (424)
T COG1894 322 GGIIVMDDSTCMVKAARRLSEFYKHESCGKCTPCREGTGWMVRILERLVRGEGQPEDLDLLEDLCNQIKGKTFCALGDAA 401 (424)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 42899847500999999999985367688887866873789999999984888866799999997242774233227655
Q ss_pred HHHHHHHHHHCHHHHHHHHHH
Q ss_conf 799999986388999999865
Q gi|254780858|r 398 AWPIQGLIKNFRPLIEERIDQ 418 (425)
Q Consensus 398 ~~pv~s~l~~F~dEfe~hI~~ 418 (425)
T Consensus 402 ~~Pv~s~lr~Fr~E~~~~i~~ 422 (424)
T COG1894 402 AWPVQSALRHFRDEFEAHIKV 422 (424)
T ss_pred CHHHHHHHHHCHHHHHHHHCC
T ss_conf 046899998678999976304