HHsearch alignment for GI: 254780858 and conserved domain: COG4656
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion].
Probab=100.00 E-value=0 Score=330.41 Aligned_cols=330 Identities=22% Similarity=0.341 Sum_probs=246.0
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 67798999977998999999826989999999983977687571124556874235656886199985767784860048
Q gi|254780858|r 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 (425)
Q Consensus 16 ~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr 95 (425)
T Consensus 101 ~~d~~~~w~e~~p~~~~~---~~s~e~Lle~I~qAGIvg~gga~fpT~~Kl~~~----~~ki~~LIinaaecEp~~~~d~ 173 (529)
T COG4656 101 QGDGLDQWIELQPIEDFE---GASPEELLEKIKQAGIVGLGGAGFPTAVKLQAG----CKKIETLIINAAECEPYITADD 173 (529)
T ss_pred CCCCHHHHHHCCCCCCHH---HCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC----CCCEEEEEEEHHCCCCCCCHHH
T ss_conf 575154442037774032---279999999999809564377778614442554----0300036663100576643768
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99986258999999999997183638998155517899999999999986899776767886640699745751001107
Q gi|254780858|r 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEE 175 (425)
Q Consensus 96 ~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeE 175 (425)
T Consensus 174 ~LM~e~a~eI~~Gi~il~~i~~~~~~vIaied~kp~ai~~l~~a~~~~---------------~~i~I~~lp~kYP~g~~ 238 (529)
T COG4656 174 RLMREHAEEIVKGIQILRKILKPKEVVIAIEDNKPEAIAALRAALFGD---------------RDIKIHVLPTKYPSGGE 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCC---------------CCEEEEECCCCCCCCHH
T ss_conf 999998999999999999751650479987459778899999974358---------------74499976777898218
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEE
Q ss_conf 889986308999868889986227830378500028999999999960568886338987743047642678-8787268
Q gi|254780858|r 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254 (425)
Q Consensus 176 tali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~ 254 (425)
T Consensus 239 k~li~~ltgr~-vP~g~--lp~~vgv-----lv~NV~T~~aV~~AIv~~~Pl----------ier~vTltG~av~~p~nv 300 (529)
T COG4656 239 KQLIKILTGRE-VPKGG--LPSDVGV-----LVQNVGTAYAVKRAIVDGKPL----------IERVVTLTGDAVKRPKNV 300 (529)
T ss_pred HHHHHHHHCCC-CCCCC--CCCCCCE-----EEECHHHHHHHHHHHHCCCCE----------EEEEEEEECCCCCCCCEE
T ss_conf 88999974883-88888--8864457-----983558899999998659971----------799998514121688608
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 93589879999998615567871100489852456565321002456334220110387346651799428652899999
Q gi|254780858|r 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 (425)
Q Consensus 255 evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~ 334 (425)
T Consensus 301 ~VrIGTP~~~lL~-~~G~~~~~~~~---vi~gGPmmG~~l~-~ld-~PV----------tK~t~~Ll~~~~~e~~~~~~~ 364 (529)
T COG4656 301 WVRIGTPVSQLLN-EAGGIDTKPYR---VIMGGPMMGFKLP-TLD-APV----------TKTTNGLLALTKKELLEPIKE 364 (529)
T ss_pred EEECCCCHHHHHH-HCCCCCCCCCE---EEECCCCCCCCCC-CCC-CCE----------ECCCCEEEECCCCCCCCCCHH
T ss_conf 9977894999999-74897678751---7846875564144-567-764----------614443784373234663010
Q ss_pred HHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHH
Q ss_conf 9999998762799885230289--99999999982899989999999999862236667765024799999986388999
Q gi|254780858|r 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 (425)
Q Consensus 335 ~~~~F~a~ESCGkCtPCR~Gt~--~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEf 412 (425)
T Consensus 365 q--------sCi~C~~C~d~CP~~Llp~ql~~~a~~--~~~~e~~~~~l~dCIE-Cg~Ca~vCPs~ipl---vq~~r~~K 430 (529)
T COG4656 365 Q--------SCIRCSLCADACPVNLLPQQLYWFAKG--EQHDEEEEHNLLDCIE-CGACAYVCPSNIPL---VQYFRQEK 430 (529)
T ss_pred H--------CCCCHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH-HCCCHHCCCCCCCH---HHHHHHHH
T ss_conf 1--------150477787747512588886677654--2456888877665255-07311007777888---99999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780858|r 413 EER 415 (425)
Q Consensus 413 e~h 415 (425)
T Consensus 431 a~i 433 (529)
T COG4656 431 AEI 433 (529)
T ss_pred HHH
T ss_conf 999