HHsearch alignment for GI: 254780858 and conserved domain: PRK05035
>PRK05035 electron transport complex protein RnfC; Provisional.
Probab=100.00 E-value=0 Score=403.56 Aligned_cols=316 Identities=22% Similarity=0.295 Sum_probs=242.5
Q ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82698999999998397768757112455687423565688619998576778486004899986258999999999997
Q gi|254780858|r 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 (425)
Q Consensus 36 l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a 115 (425)
T Consensus 129 ~~~~~~el~~~I~~AGIvGlGGAgFPT~vKL~p----~~~~idtLIINgaECEPYIT~DdrLM~E~a~eIi~Gi~Il~~~ 204 (725)
T PRK05035 129 RSLSREELIERIRQAGIAGLGGAGFPTAIKLQP----GGDKIETLIINGAECEPYITADDRLMRERADEILEGIRILAHI 204 (725)
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCC----CCCCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 448999999999975943468888861131268----8887758997351356424016999988899999999999998
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 18363899815551789999999999998689977676788664069974575100110788998630899986888998
Q gi|254780858|r 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 (425)
Q Consensus 116 ~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~ 195 (425)
T Consensus 205 l~~~~~iIgIEdNKPeAI~al~~a~~~~---------------~~i~V~~lptkYPqGgEKqLI~~lTGre-VP~G~--l 266 (725)
T PRK05035 205 LQPKEVLIGIEDNKPEAIAALRAALAGA---------------DDIRVRVIPTKYPSGGEKQLIQILTGKE-VPSGG--R 266 (725)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHCCC---------------CCEEEEECCCCCCCCHHHHHHHHHHCCC-CCCCC--C
T ss_conf 3998799998389899999999974669---------------9859998178799948999999994974-68999--8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 6227830378500028999999999960568886338987743047642678-878726893589879999998615567
Q gi|254780858|r 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 (425)
Q Consensus 196 p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG~~ 274 (425)
T Consensus 267 PadvGv-----vv~NVgTa~AI~~Av~~G~PLi----------eRvVTVTG~av~~P~N~~v~iGTPv~~Ll~-~~Gg~~ 330 (725)
T PRK05035 267 PADIGV-----LMQNVGTAYAIKRAVIDGEPLI----------ERVVTLTGEAVARPGNVWARLGTPVRHLLN-QAGFKP 330 (725)
T ss_pred CCCCCE-----EEECHHHHHHHHHHHHCCCCEE----------EEEEEEECCCCCCCCEEEEECCCCHHHHHH-HCCCCC
T ss_conf 765665-----9866899999999997499746----------899997467548997289979995999999-749988
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-CCCC
Q ss_conf 871100489852456565321002456334220110387346651799428652899999999999876279988-5230
Q gi|254780858|r 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT-PCRE 353 (425)
Q Consensus 275 ~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCt-PCR~ 353 (425)
T Consensus 331 ~~~~k---vImGGPMMG~~l~~-ld-vPV----------~K~Tn~ILa~~~~e~~~~~-----~e~~CIRCG~Cv~aCP~ 390 (725)
T PRK05035 331 DADQR---VIMGGPMMGFTLPD-LD-VPV----------VKTTNCLLAPSATELPPPP-----PEQACIRCGACADACPA 390 (725)
T ss_pred CCCCE---EEECCCCCCCCCCC-CC-CCC----------EECCEEEEECCHHHCCCCC-----CCCCCCCCCHHHHHCCC
T ss_conf 88875---88458975762788-99-870----------3054069962877748888-----88777525136763899
Q ss_pred HH-HHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 28-99999999998289998999999999--986223666776502479999998638899999986
Q gi|254780858|r 354 GT-GWMMRVMERLVKGIAQKREIDLLYEV--SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 (425)
Q Consensus 354 Gt-~~l~~il~~i~~G~a~~~Dl~~L~~l--a~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~ 417 (425)
T Consensus 391 ~LlPqqL~w~---ak----~~~~dka~~~~l~DCIE-CG~CaYVCPS~IPLVqYyR~aK~eI~~~~~ 449 (725)
T PRK05035 391 SLLPQQLYWF---AK----AEEHDKAEEHNLFDCIE-CGACAYVCPSNIPLVQYYRQAKAEIRAIEQ 449 (725)
T ss_pred CCCHHHHHHH---HH----CCCHHHHHHCCCCCCCC-CCCCCEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7779999999---87----67799998679963600-287762689888489999999999999999