HHsearch alignment for GI: 254780858 and conserved domain: PRK05352
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional.
Probab=99.86 E-value=1.1e-20 Score=159.44 Aligned_cols=297 Identities=17% Similarity=0.233 Sum_probs=190.0
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98269899999999839776875711245568742356568861999857677848600489998625899999999999
Q gi|254780858|r 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 (425)
Q Consensus 35 ~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~ 114 (425)
T Consensus 111 ~~~ls~e~i~~~L~~sGl----w~~~rqRP-f~~ia-~p~~~P~~IfIna~d~~Pl~~d~~~il~~~~~~f~~Gi~iL~k 184 (448)
T PRK05352 111 LASLSREQVKENLLESGL----WTALRTRP-FSKVP-APDSTPRAIFVTAMDTNPLAADPEVIIAEQSEAFQAGLTVLAR 184 (448)
T ss_pred HHHCCHHHHHHHHHHCCC----CCCCCCCC-CCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 435699999999986698----62225645-55368-9878876599976568878889799998779999999999998
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 71836389981555178999999999999868997767678866406997457510011078899863089998688899
Q gi|254780858|r 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 (425)
Q Consensus 115 a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP 194 (425)
T Consensus 185 Lt~-~~v~l~~~~~~~~~~~~----------------------~~~v~~~~~~GphPaG~~g~~Ih~i~----------- 230 (448)
T PRK05352 185 LTE-GKVHVCKADGAALPGEN----------------------LANVEVHEFAGPHPAGLVGTHIHFLD----------- 230 (448)
T ss_pred HCC-CCEEEEECCCCCCCCCC----------------------CCCEEEEEECCCCCCCCHHHHEEEEC-----------
T ss_conf 618-97699954897654223----------------------57728998179899998132044676-----------
Q ss_pred CCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 86227830378500--028999999999960568886338987743047642678-878726893589879999998615
Q gi|254780858|r 195 FPANVGLYGCPTTV--NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCG 271 (425)
Q Consensus 195 ~p~~~Gl~g~PT~V--~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~G 271 (425)
T Consensus 231 -Pi~~g~-----~VW~i~~qdVi~Ig~~~~~G~----------~~~~RvVtv~G~~v~~P~~~~t~iGa~v~~ll~---g 291 (448)
T PRK05352 231 -PVSAGK-----TVWTIGYQDVIAIGKLFLTGE----------LYTERVVALAGPAVKKPRLVRTRLGASLSELTA---G 291 (448)
T ss_pred -CCCCCC-----EEEECCHHHHHHHHHHHHCCC----------CCCEEEEEEECCCCCCCCEEEEECCCCHHHHHC---C
T ss_conf -888777-----469715888999999997498----------676589997368667883599968971999966---7
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC--HHHHH----------HHHHH-
Q ss_conf 567871100489852456565321002456334220110387346651799428652--89999----------99999-
Q gi|254780858|r 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD--IIKAI----------WRLSV- 338 (425)
Q Consensus 272 G~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~--iv~~~----------~~~~~- 338 (425)
T Consensus 292 ~~~~~~~--R-iIsG~vL~G~~~~~~--~~~LG~----------y~~qvtvipe~~~~e~~Gw~~Pg~~k~S~~~~~~S~ 356 (448)
T PRK05352 292 ELKAGEV--R-VISGSVLSGRTASGP--HAYLGR----------YHNQVSVLPEGREREFFGWLRPGSNKFSITRTYLSH 356 (448)
T ss_pred CCCCCCE--E-EEECCCCCCEECCCC--CCCCCC----------CCCEEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEH
T ss_conf 7777870--6-995676434151577--775345----------554226603787121101335788765412145400
Q ss_pred HHH-H-----------H----HCCCCC---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHC-CCCCCCCCHH
Q ss_conf 998-7-----------6----279988---523028999999999982899989999999999--8622-3666776502
Q gi|254780858|r 339 FYK-H-----------E----SCGQCT---PCREGTGWMMRVMERLVKGIAQKREIDLLYEVS--KNIE-GRTICALGDA 396 (425)
Q Consensus 339 F~a-~-----------E----SCGkCt---PCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la--~~i~-~~S~C~lG~~ 396 (425)
T Consensus 357 l~~~~~~~~~t~~nG~~Ra~I~~g~~e~v~P~di~P~qL~---ka~~~-----~d~e~~e~lGi~e~~eED~alcsyvCp 428 (448)
T PRK05352 357 LFKKKLFNFTTSTNGSERAMVPIGNYERVMPLDILPTLLL---RALIA-----GDTDEAQALGALELDEEDLALCTFVCP 428 (448)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCHHHHH---HHHHC-----CCHHHHHHCCCCCCCHHHCCEEEEECC
T ss_conf 1467767875666886443788674764278856899999---99870-----699999875990338536414645888
Q ss_pred HHHHHHHHHHHCHHHHH
Q ss_conf 47999999863889999
Q gi|254780858|r 397 AAWPIQGLIKNFRPLIE 413 (425)
Q Consensus 397 a~~pv~s~l~~F~dEfe 413 (425)
T Consensus 429 SK~e~~~i~r~~L~~~~ 445 (448)
T PRK05352 429 GKYEYGPILRDCLDRIE 445 (448)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 61248999999999997