HHsearch alignment for GI: 254780858 and conserved domain: TIGR01936
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=96.97 E-value=0.0059 Score=39.89 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=156.0
Q ss_pred HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC--CCCCCEEEEEECCCCCCCCCCCHHHHHHHHH------HHHHH
Q ss_conf 269899999999839776875711245568742356--5688619998576778486004899986258------99999
Q gi|254780858|r 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPH------TLIEG 108 (425)
Q Consensus 37 ~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~--~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~------~vieG 108 (425)
T Consensus 112 ~Ls~~~~~~~l~~sGLw~~--------~k~RPFd~va~p~~~p~~iFi~a~Dt~Plap~~~~~~~~~s~~E~G~Y~f~~G 183 (466)
T TIGR01936 112 TLSAEQIKELLLESGLWTA--------LKQRPFDIVATPDSSPRDIFITAADTRPLAPDPEVVLAEFSEKEEGYYAFVAG 183 (466)
T ss_pred HCCHHHHHHHHHHHHHHHH--------HHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 0378999999874005767--------65088888866888722057730057689988023352245543413566789
Q ss_pred HHHHHHHHC-CCEEEEEE-CCCCHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 999999718-36389981-55517899-9999999999868997767678866406997457510011078899863089
Q gi|254780858|r 109 CVIASFAIG-AHCAFIYV-RGEFIRER-ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 (425)
Q Consensus 109 ~~i~a~a~g-A~~~~I~i-r~ey~~~~-~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~ 185 (425)
T Consensus 184 ~~alakL~~G~~k~~~~~k~~~~~lP~~e~~----------------------~~~~~~~~~GPhPaG~~g~hIh~~~-- 239 (466)
T TIGR01936 184 LDALAKLFTGSLKVHVCKKADRLSLPTQELL----------------------SNAEIHTVSGPHPAGLPGTHIHFIA-- 239 (466)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCHHHC----------------------CCEEEEEEECCCCCCCCCEEEEEEC--
T ss_conf 9999987279964279970488757721210----------------------6615899526658986230345304--
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCC--EEEEECCCCC
Q ss_conf 99868889986227-830378500028999999999960568886338987743047642678-8787--2689358987
Q gi|254780858|r 186 KGQPRLKPPFPANV-GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYP--CTVEESMSIT 261 (425)
Q Consensus 186 r~~Pr~kPP~p~~~-Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~P--g~~evp~Gt~ 261 (425)
T Consensus 240 --------Pi~~~~~~Vw----~-l~~qDvi~iG~LfltG~~~~~----------rviaLAG~~~~~~~RryVrt~~GA~ 296 (466)
T TIGR01936 240 --------PIGAEKEVVW----T-LNYQDVIAIGKLFLTGELLTE----------RVIALAGPAVKKPLRRYVRTTKGAN 296 (466)
T ss_pred --------CCCCCCCEEE----E-EEEEEEEEECCHHHCCEEEEE----------EEEEEECCCCCCCCCCEEEEECCCC
T ss_conf --------3258863589----8-741132320102212243115----------6777306401113466278723776
Q ss_pred HHHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9999998615567-871100489852456565321002456334220110387346651799428652899999999
Q gi|254780858|r 262 FDELIEKHCGGIR-GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 (425)
Q Consensus 262 l~eli~~~~GG~~-~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~ 337 (425)
T Consensus 297 l~~l~~~~--~~~k~~~~r---~IsG~vLtG~~~~~~~~-PyLG---~r-------~~qisvl~eg~d~~E~F~~~~ 357 (466)
T TIGR01936 297 LSQLLPGE--LTSKEGENR---LISGSVLTGRLAKKEEA-PYLG---RR-------DLQISVLPEGDDKRELFGWLR 357 (466)
T ss_pred HHHHCCCC--CCCCCCCCE---EEECCCCCCCCCCCCCC-CCCC---CC-------CCEEEEECCCCCCHHHHHHHH
T ss_conf 68822433--553357725---88678776723366788-7265---20-------144666268797403466676