HHsearch alignment for GI: 254780858 and conserved domain: TIGR01945
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=100.00 E-value=0 Score=433.27 Aligned_cols=318 Identities=22% Similarity=0.363 Sum_probs=248.4
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99826989999999983977687571124556874235656886199985767784860048999862589999999999
Q gi|254780858|r 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 (425)
Q Consensus 34 ~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a 113 (425)
T Consensus 118 ~~~~l~~~~i~~~I~~AGIvGlGGAtFPthvKL~~pp---~~~~~~LIiNGAECEPYlT~DdrLMrEra~eI~~GI~I~~ 194 (444)
T TIGR01945 118 DESSLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPP---EKKVELLIINGAECEPYLTCDDRLMRERAEEIIQGIRILL 194 (444)
T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC---CCCCEEEEEECEECCCCCCCCCHHHHCCHHHHHHHHHHHH
T ss_conf 7331487999999997086556755201011038586---5521078980433386546142233317578999999999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97183638998155517899999999999986899776767886640699745751001107889986308999868889
Q gi|254780858|r 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 (425)
Q Consensus 114 ~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kP 193 (425)
T Consensus 195 ~~L~~~~~viGIEDNKpeAI~al~~a~~~~~--------~P---t~~i~v~vlpTkYPqGgEKQLI~~lTgr-eVPsG~- 261 (444)
T TIGR01945 195 KILGVKKVVIGIEDNKPEAIAALKKALEGYP--------KP---TKNIKVRVLPTKYPQGGEKQLIKALTGR-EVPSGG- 261 (444)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHCCC--------CC---CCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCC-
T ss_conf 9718986999865795799999999860278--------88---7754788841228986078899998345-078888-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 986227830378500028999999999960568886338987743047642678-8787268935898799999986155
Q gi|254780858|r 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 (425)
Q Consensus 194 P~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG 272 (425)
T Consensus 262 -LP~d~Gv-----vvqNVGT~~Ai~~Av~~G~PL----------ieRvVTVtG~~i~~P~N~~v~IGTPV~~~l~-~cGg 324 (444)
T TIGR01945 262 -LPADIGV-----VVQNVGTAFAIKEAVVNGKPL----------IERVVTVTGDAIRRPKNLWVLIGTPVSDILA-HCGG 324 (444)
T ss_pred -CCHHCCE-----EEECHHHHHHHHHHHHCCCCC----------EEEEEEEECCCCCCCCCEEEECCCCHHHHHH-HCCC
T ss_conf -8312144-----456067899999998678961----------2566875141327887668855885799998-7187
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHH-HHHHHHHHHHCCCCC-C
Q ss_conf 67871100489852456565321002456334220110387346651799428652899999-999999876279988-5
Q gi|254780858|r 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW-RLSVFYKHESCGQCT-P 350 (425)
Q Consensus 273 ~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~-~~~~F~a~ESCGkCt-P 350 (425)
T Consensus 325 ~~~~~~r---~i~GGPMMG~al~-~~~-vPv----------~KGtsGiLal~~~----E~~~~~~~--~~CIRCg~Cv~~ 383 (444)
T TIGR01945 325 FREKTER---LIMGGPMMGLALP-SLD-VPV----------TKGTSGILALDKE----ELTEPKPE--KPCIRCGKCVNV 383 (444)
T ss_pred CCCCCCC---EEEECCCCCCCCC-CCC-CCE----------EECCCCEECCCCC----CCCCCCCC--CCCCCHHCCCCC
T ss_conf 7577887---5740786676578-888-667----------7225400035701----16787466--788440010155
Q ss_pred CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHCHHHHH
Q ss_conf 23028-999999999982899989999999999--8622366677650247999999863889999
Q gi|254780858|r 351 CREGT-GWMMRVMERLVKGIAQKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 (425)
Q Consensus 351 CR~Gt-~~l~~il~~i~~G~a~~~Dl~~L~~la--~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe 413 (425)
T Consensus 384 CPm~L~P~~L~~~-------A~~~~~d~~~~~~L~DCIECG-~C~Y~CPs~iPLV~Y~R~aK~~~~ 441 (444)
T TIGR01945 384 CPMGLLPQQLNWL-------AKADEFDEAAEHNLMDCIECG-SCSYVCPSNIPLVQYIRQAKAKLR 441 (444)
T ss_pred CCCCCHHHHHHHH-------HHHHHHHHHHHCCCCEEEECC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6744227999987-------531016889963881466125-665428775258999988789861