HHsearch alignment for GI: 254780858 and conserved domain: pfam05896
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=93.38 E-value=0.69 Score=25.95 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=96.9
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCHHH--HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98269899999999839776875711245--5687423565688619998576778486004899986258999999999
Q gi|254780858|r 35 ILEKGRDWIINEVKASGLRGRGGAGFSTG--MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 (425)
Q Consensus 35 ~l~~~~~~ii~~v~~sgl~GrGGAgFPt~--~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~ 112 (425)
T Consensus 110 ~~~ls~e~i~~~Ll~sGlW-------~~~rqRPf~~ia-~p~~~P~aIFIsa~dt~PLa~D~~~il~~~~~~F~~Gl~~L 181 (257)
T pfam05896 110 LSSLSREAVKENLLESGLW-------TALRTRPFSKVA-APDSTPKAIFVTAMDTNPLAADPEVIIAEQEEAFQAGLTAL 181 (257)
T ss_pred HHHCCHHHHHHHHHHCCCH-------HHHHCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3247999999999866970-------675426464569-99897787999803588888997999876599999999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99718363899815551789999999999998689977676788664069974575100110788998630899986888
Q gi|254780858|r 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 (425)
Q Consensus 113 a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~k 192 (425)
T Consensus 182 ~kLt~g-~v~l~~~~~~~~~~~~----------------------~~~v~~~~f~GPHPAGnvG~hIh~i~--------- 229 (257)
T pfam05896 182 SKLTDG-KVHVCKAPGAALPLAD----------------------LKGVELHEFSGPHPAGLVGTHIHFID--------- 229 (257)
T ss_pred HHHCCC-CEEEEECCCCCCCCCC----------------------CCCEEEEEECCCCCCCCHHHHEEECC---------
T ss_conf 997299-7799938998776556----------------------68769999559988978455123426---------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99862278303785000289999999999605
Q gi|254780858|r 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 (425)
Q Consensus 193 PP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G 224 (425)
T Consensus 230 Pi-n~~~~VW-----ti~~qdVi~IG~lf~tG 255 (257)
T pfam05896 230 PV-NAGKTVW-----TIGYQDVIAIGKLFLTG 255 (257)
T ss_pred CC-CCCCEEE-----EECHHHHHHHHHHHHCC
T ss_conf 89-8886179-----97699999999998738