HHsearch alignment of GI: 254780858 and MMDB domain: 3i9v_1_1-237

>3i9v_1 (1:1-237) NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1*
Probab=100.00  E-value=0  Score=451.53  Aligned_cols=223  Identities=52%  Similarity=0.899  Sum_probs=215.2

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r    4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV   82 (425)
Q Consensus         4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~   82 (425)
                      .+++++.+....++.+|++|.+.++|+.+.+.+. +++++++++|++||||||||||||||+||+++++.. ..++||||
T Consensus        13 i~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~aGlvG~GGAgFPt~~K~~~~~~~~-~~~~~liv   91 (237)
T 3i9v_1           13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC   91 (237)
T ss_dssp             CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC-CCCEEEEE
T ss_conf             64698851799998889999977999999999870899999999998098747666162446677453567-99628997


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf             5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r   83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI  161 (425)
Q Consensus        83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i  161 (425)
                      ||+||||++|+||+||+++||+||||+.|+++++||++++|||+++|++++++|++||+|++.++++|.| .+++++++|
T Consensus        92 N~~EcEP~l~~D~~ll~~~p~~ii~G~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~e~~~~~~~g~~~~~~~~~~~i  171 (237)
T 3i9v_1           92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL  171 (237)
T ss_dssp             ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf             26779732047899999869999999999998745554899964430667999999999998748866544588877238


Q ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHH
Q ss_conf             997457510011078899863089998688899862278303785000289999999999605688
Q gi|254780858|r  162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW  227 (425)
Q Consensus       162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~  227 (425)
                      +|+.++++||||||++||++++|++..||.|||+|+++|+|+.||+|||+||+++++.++++|++|
T Consensus       172 ~V~~~~~~Yp~GeE~~Li~~l~G~~~~p~~~~p~~~~~gv~n~~T~v~n~etl~~~~~~i~~G~~w  237 (237)
T 3i9v_1          172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADW  237 (237)
T ss_dssp             EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCHH
T ss_conf             998568632015125789987187366688778873314346764022199999888998519436