HHsearch alignment of GI: 254780858 and MMDB domain: 3i9v_1_1-237
>3i9v_1 (1:1-237) NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1*
Probab=100.00 E-value=0 Score=451.53 Aligned_cols=223 Identities=52% Similarity=0.899 Sum_probs=215.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 (425)
Q Consensus 4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~ 82 (425)
.+++++.+....++.+|++|.+.++|+.+.+.+. +++++++++|++||||||||||||||+||+++++.. ..++||||
T Consensus 13 i~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~aGlvG~GGAgFPt~~K~~~~~~~~-~~~~~liv 91 (237)
T 3i9v_1 13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC 91 (237)
T ss_dssp CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC-CCCEEEEE
T ss_conf 64698851799998889999977999999999870899999999998098747666162446677453567-99628997
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf 5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 (425)
Q Consensus 83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i 161 (425)
||+||||++|+||+||+++||+||||+.|+++++||++++|||+++|++++++|++||+|++.++++|.| .+++++++|
T Consensus 92 N~~EcEP~l~~D~~ll~~~p~~ii~G~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~e~~~~~~~g~~~~~~~~~~~i 171 (237)
T 3i9v_1 92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL 171 (237)
T ss_dssp ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf 26779732047899999869999999999998745554899964430667999999999998748866544588877238
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHH
Q ss_conf 997457510011078899863089998688899862278303785000289999999999605688
Q gi|254780858|r 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 (425)
Q Consensus 162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~ 227 (425)
+|+.++++||||||++||++++|++..||.|||+|+++|+|+.||+|||+||+++++.++++|++|
T Consensus 172 ~V~~~~~~Yp~GeE~~Li~~l~G~~~~p~~~~p~~~~~gv~n~~T~v~n~etl~~~~~~i~~G~~w 237 (237)
T 3i9v_1 172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADW 237 (237)
T ss_dssp EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCHH
T ss_conf 998568632015125789987187366688778873314346764022199999888998519436