HHsearch alignment of GI: 254780858 and MMDB domain: 3i9v_1_335-438

>3i9v_1 (1:335-438) NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1*
Probab=99.97  E-value=1.4e-30  Score=225.78  Aligned_cols=98  Identities=36%  Similarity=0.830  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             52899999999999876279988523028-99999999998289998999999999986223666776502479999998
Q gi|254780858|r  327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI  405 (425)
Q Consensus       327 ~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt-~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l  405 (425)
                      +||+++++++++||++||||||||||+|| +|+.++|++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+|
T Consensus         1 v~~v~~~~~~~~F~~~ESCGqCtPCR~Gt~~~~~~il~~i~~G~~~~~dl~~l~~i~~~i~~~s~C~lg~~a~~~v~s~l   80 (104)
T 3i9v_1            1 VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSL   80 (104)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             04999999876306777689997838887999999999999679998999999999976158882879667899999999


Q ss_pred             HHCHHHHHHHHHHHCCCCCC
Q ss_conf             63889999998651899999
Q gi|254780858|r  406 KNFRPLIEERIDQYHRCNFQ  425 (425)
Q Consensus       406 ~~F~dEfe~hI~~~~rCp~~  425 (425)
                      ++|||||++||++ ++||..
T Consensus        81 ~~F~~efe~~i~~-~~~~~~   99 (104)
T 3i9v_1           81 RHFKDQYLALARE-KRPVPR   99 (104)
T ss_dssp             HHHHHHHHHHHHT-TCCCCC
T ss_pred             HHHHHHHHHHHHC-CCCCCC
T ss_conf             9869999999865-899997