HHsearch alignment of GI: 254780858 and MMDB domain: 3i9v_1_335-438
>3i9v_1 (1:335-438) NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1*
Probab=99.97 E-value=1.4e-30 Score=225.78 Aligned_cols=98 Identities=36% Similarity=0.830 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52899999999999876279988523028-99999999998289998999999999986223666776502479999998
Q gi|254780858|r 327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 (425)
Q Consensus 327 ~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt-~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l 405 (425)
+||+++++++++||++||||||||||+|| +|+.++|++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+|
T Consensus 1 v~~v~~~~~~~~F~~~ESCGqCtPCR~Gt~~~~~~il~~i~~G~~~~~dl~~l~~i~~~i~~~s~C~lg~~a~~~v~s~l 80 (104)
T 3i9v_1 1 VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSL 80 (104)
T ss_dssp SCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 04999999876306777689997838887999999999999679998999999999976158882879667899999999
Q ss_pred HHCHHHHHHHHHHHCCCCCC
Q ss_conf 63889999998651899999
Q gi|254780858|r 406 KNFRPLIEERIDQYHRCNFQ 425 (425)
Q Consensus 406 ~~F~dEfe~hI~~~~rCp~~ 425 (425)
++|||||++||++ ++||..
T Consensus 81 ~~F~~efe~~i~~-~~~~~~ 99 (104)
T 3i9v_1 81 RHFKDQYLALARE-KRPVPR 99 (104)
T ss_dssp HHHHHHHHHHHHT-TCCCCC
T ss_pred HHHHHHHHHHHHC-CCCCCC
T ss_conf 9869999999865-899997