HHsearch results for GI: 254780858 and protein with PDBid: 3i9v_1

>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=100.00  E-value=0  Score=924.42  Aligned_cols=414  Identities=45%  Similarity=0.830  Sum_probs=394.2

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r    4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV   82 (425)
Q Consensus         4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~   82 (425)
                      .++.+|+|.+..++++|++|+++|||++|+|+++ |+|++++++|++||||||||||||||+||+++++.. .+++||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~y~~~ggy~~~~~~l~~~~p~~ii~~i~~aGl~GrGGAgFPT~vK~~~~~~~~-~~~~~vii   91 (438)
T 3i9v_1           13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC   91 (438)
T ss_dssp             CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC-CCCCEEEE
T ss_conf             42498852799997789999976999999999871899999999998198757767470547777355668-99858999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf             5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r   83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI  161 (425)
Q Consensus        83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i  161 (425)
                      ||+||||++||||+||+++||+|||||+|+++++||+++|||||+||++++++|++||++++++|+||+| ++++++++|
T Consensus        92 Ng~EcEP~~~kD~~Lm~~~p~~vieG~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~~a~~~g~lg~~~~g~~~~~~i  171 (438)
T 3i9v_1           92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL  171 (438)
T ss_dssp             ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             68678623441399997778999999999999858875899823035999999999999988748656545688887207


Q ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEE
Q ss_conf             99745751001107889986308999868889986227830378500028999999999960568886338987743047
Q gi|254780858|r  162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL  241 (425)
Q Consensus       162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl  241 (425)
                      +|++++++|||||||+||+|+||+|+.||.|||||+++|+|++||+||||||+++|+.|+++|.+||+++|++.++|||+
T Consensus       172 ~V~~~~~~Yp~GeE~aLi~al~G~r~~pr~~pP~p~~~Gl~~~pt~v~NVeT~~~v~~ii~~G~~~~~~~gt~~~~Gtkl  251 (438)
T 3i9v_1          172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKL  251 (438)
T ss_dssp             EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEE
T ss_conf             99978984235789999998639757999999975321223787366529999987899984969885348778997179


Q ss_pred             EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf             6426788787268935898799999986155678711004898524565653210--02456334220110387346651
Q gi|254780858|r  242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDYDGLKEMGSGLGTAA  319 (425)
Q Consensus       242 ~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~~~l~~~Gs~LGsg~  319 (425)
                      +||||+|++|++||||+|||++|||+.++|+..   .+++++++||+++++++..  .+| +|+||+++.+.|+++||++
T Consensus       252 ~tvsG~V~~P~~~evp~Gt~l~eli~~~gG~~~---~~~~~v~~gG~~~~~~~~~~~~~d-~p~~~~~l~~~g~~lgtg~  327 (438)
T 3i9v_1          252 YQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSYEHLQAKGSMLGTGG  327 (438)
T ss_dssp             EEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCSTTTTGGGSSCCSSSE
T ss_pred             EEECCCCCCCEEEEECCCCCHHHHHHHHCCCCC---CCCEEEEECCCCCCCCCCHHHHCC-CCCCHHHHHHCCCEECCCC
T ss_conf             971576368806996798728999998658766---674399956877664321012126-7674677986297303676


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             7994286528999999999998762799885230289-999999999828999899999999998622366677650247
Q gi|254780858|r  320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA  398 (425)
Q Consensus       320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~  398 (425)
                      |+|+|+++||++.+.++++||++||||||+|||+|++ ++.++++++..|+++.+|+++|+++++.|..+|+|+|++.++
T Consensus       328 iivl~~~~~~v~~~~~~~~f~a~ESCgqC~pCr~G~p~~l~~il~~i~~g~~~~~dl~~l~~l~~~i~~~s~C~~~~~a~  407 (438)
T 3i9v_1          328 VILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAV  407 (438)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             32578301489999999875047778999584888699999999999967999899999999997614998267977889


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf             9999998638899999986518999
Q gi|254780858|r  399 WPIQGLIKNFRPLIEERIDQYHRCN  423 (425)
Q Consensus       399 ~pv~s~l~~F~dEfe~hI~~~~rCp  423 (425)
                      +|+.|+|++|++||++|+++ +||-
T Consensus       408 ~pl~s~lr~F~~Ef~a~~~~-kr~~  431 (438)
T 3i9v_1          408 WPVKGSLRHFKDQYLALARE-KRPV  431 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf             99999999989999999974-8999