HHsearch results for GI: 254780858 and protein with PDBid: 3i9v_1
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=100.00 E-value=0 Score=924.42 Aligned_cols=414 Identities=45% Similarity=0.830 Sum_probs=394.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 (425)
Q Consensus 4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~ 82 (425)
.++.+|+|.+..++++|++|+++|||++|+|+++ |+|++++++|++||||||||||||||+||+++++.. .+++||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~y~~~ggy~~~~~~l~~~~p~~ii~~i~~aGl~GrGGAgFPT~vK~~~~~~~~-~~~~~vii 91 (438)
T 3i9v_1 13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC 91 (438)
T ss_dssp CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC-CCCCEEEE
T ss_conf 42498852799997789999976999999999871899999999998198757767470547777355668-99858999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf 5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 (425)
Q Consensus 83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i 161 (425)
||+||||++||||+||+++||+|||||+|+++++||+++|||||+||++++++|++||++++++|+||+| ++++++++|
T Consensus 92 Ng~EcEP~~~kD~~Lm~~~p~~vieG~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~~a~~~g~lg~~~~g~~~~~~i 171 (438)
T 3i9v_1 92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL 171 (438)
T ss_dssp ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf 68678623441399997778999999999999858875899823035999999999999988748656545688887207
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEE
Q ss_conf 99745751001107889986308999868889986227830378500028999999999960568886338987743047
Q gi|254780858|r 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 (425)
Q Consensus 162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl 241 (425)
+|++++++|||||||+||+|+||+|+.||.|||||+++|+|++||+||||||+++|+.|+++|.+||+++|++.++|||+
T Consensus 172 ~V~~~~~~Yp~GeE~aLi~al~G~r~~pr~~pP~p~~~Gl~~~pt~v~NVeT~~~v~~ii~~G~~~~~~~gt~~~~Gtkl 251 (438)
T 3i9v_1 172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKL 251 (438)
T ss_dssp EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEE
T ss_conf 99978984235789999998639757999999975321223787366529999987899984969885348778997179
Q ss_pred EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf 6426788787268935898799999986155678711004898524565653210--02456334220110387346651
Q gi|254780858|r 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDYDGLKEMGSGLGTAA 319 (425)
Q Consensus 242 ~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~~~l~~~Gs~LGsg~ 319 (425)
+||||+|++|++||||+|||++|||+.++|+.. .+++++++||+++++++.. .+| +|+||+++.+.|+++||++
T Consensus 252 ~tvsG~V~~P~~~evp~Gt~l~eli~~~gG~~~---~~~~~v~~gG~~~~~~~~~~~~~d-~p~~~~~l~~~g~~lgtg~ 327 (438)
T 3i9v_1 252 YQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSYEHLQAKGSMLGTGG 327 (438)
T ss_dssp EEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCSTTTTGGGSSCCSSSE
T ss_pred EEECCCCCCCEEEEECCCCCHHHHHHHHCCCCC---CCCEEEEECCCCCCCCCCHHHHCC-CCCCHHHHHHCCCEECCCC
T ss_conf 971576368806996798728999998658766---674399956877664321012126-7674677986297303676
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 7994286528999999999998762799885230289-999999999828999899999999998622366677650247
Q gi|254780858|r 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 (425)
Q Consensus 320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~ 398 (425)
|+|+|+++||++.+.++++||++||||||+|||+|++ ++.++++++..|+++.+|+++|+++++.|..+|+|+|++.++
T Consensus 328 iivl~~~~~~v~~~~~~~~f~a~ESCgqC~pCr~G~p~~l~~il~~i~~g~~~~~dl~~l~~l~~~i~~~s~C~~~~~a~ 407 (438)
T 3i9v_1 328 VILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAV 407 (438)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 32578301489999999875047778999584888699999999999967999899999999997614998267977889
Q ss_pred HHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 9999998638899999986518999
Q gi|254780858|r 399 WPIQGLIKNFRPLIEERIDQYHRCN 423 (425)
Q Consensus 399 ~pv~s~l~~F~dEfe~hI~~~~rCp 423 (425)
+|+.|+|++|++||++|+++ +||-
T Consensus 408 ~pl~s~lr~F~~Ef~a~~~~-kr~~ 431 (438)
T 3i9v_1 408 WPVKGSLRHFKDQYLALARE-KRPV 431 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 99999999989999999974-8999