HHSEARCH alignment of GI: 254780858 and SCOP domain: d2fug11

Alignment
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=99.96  E-value=6.9e-31  Score=225.21  Aligned_cols=93  Identities=35%  Similarity=0.860  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             6528999999999998762799885230289-999999999828999899999999998622366677650247999999
Q gi|254780858|r  326 STDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGL  404 (425)
Q Consensus       326 ~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~  404 (425)
                      .+|||++++++++||++||||||||||+||. |+.+++++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+
T Consensus         1 ~v~~v~~~~~~~~F~~~ESCGkC~PCR~Gt~~~~~~il~~i~~G~~~~~dl~~L~~i~~~m~~~s~C~lg~~a~~pv~s~   80 (105)
T d2fug11           1 RVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGS   80 (105)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSCCHHHHHCCCCCHHHHHHHHTBTCCCHHHHHHHHHHHHHHHSCCSSTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             96699999999999731358999860401999999999999938998778999999998635787580217449999999


Q ss_pred             HHHCHHHHHHHHHH
Q ss_conf             86388999999865
Q gi|254780858|r  405 IKNFRPLIEERIDQ  418 (425)
Q Consensus       405 l~~F~dEfe~hI~~  418 (425)
                      |+||||||++||++
T Consensus        81 l~~F~~ef~a~i~~   94 (105)
T d2fug11          81 LRHFKDQYLALARE   94 (105)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99889999999873


SCOP domain information

class: All alpha proteins
fold: Bromodomain-like
superfamily: Nqo1C-terminal domain-like
family: Nqo1C-terminal domain-like
domain: NADH-quinone oxidoreductase chain 1, Nqo1
species: Thermus thermophilus [TaxId: 274]