HHSEARCH alignment of GI: 254780858 and SCOP domain: d2fug12

Alignment
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=593.12  Aligned_cols=235  Identities=51%  Similarity=0.903  Sum_probs=226.3

Q ss_pred             HHHH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             0343-675517876779899997799899999982-69899999999839776875711245568742356568861999
Q gi|254780858|r    4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV   81 (425)
Q Consensus         4 ~~~r-~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv   81 (425)
                      ++.| +|+|.+..++++|++|+++|||++|+|+++ |+|++|+++|++||||||||||||||+||+++++.. ..++|||
T Consensus         6 k~~~vi~~~~~~~~~~~l~~Y~~~GGY~~l~kal~~~~pe~ii~~v~~sgL~GrGGAgFPt~~Kw~~~~~~~-~~~~yvV   84 (243)
T d2fug12           6 RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLI   84 (243)
T ss_dssp             TCTTCCCCSSCCCSCCSHHHHHTTTTTHHHHHHHHHSCHHHHHHHHHTTTCBCTTSSCCBHHHHHHTSCSSS-CCCCEEE
T ss_pred             CHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHC-CCCEEEE
T ss_conf             054698842799999999999986999999999973999999999998544421456898514565230104-8860798


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf             85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r   82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD  160 (425)
Q Consensus        82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~  160 (425)
                      ||||||||++||||+||+++||+|||||+|+|+++||+++|||||+||++++++|++||++++++|+||++ ++++++++
T Consensus        85 vN~~E~EPg~~kDr~Ll~~~Ph~vieG~~iaa~avgA~~~~I~ir~e~~~ai~~l~~ai~~a~~~g~lg~~i~g~~~~~~  164 (243)
T d2fug12          85 CNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFD  164 (243)
T ss_dssp             EEECCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBSSTTSTTCCBE
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf             64578986344789999986999999999999973766389984446588999999999998776987766558899803


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
Q ss_conf             6997457510011078899863089998688899862278303785000289999999999605688863389877430
Q gi|254780858|r  161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT  239 (425)
Q Consensus       161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt  239 (425)
                      |+|++++++||||||||||+||||+|+.||.|||||+++||||+||+||||||+|+||.|+++|++||+++|+++++|.
T Consensus       165 i~v~~~~g~Yi~GEEtaLi~sleG~~~~pr~~pP~p~~~Gl~g~PTvV~NVeTla~v~~ii~~G~~~f~~~G~~~~~G~  243 (243)
T d2fug12         165 LHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM  243 (243)
T ss_dssp             EEEEECCSCGGGGSHHHHHHHHTTSCCCCCCSSSCTTTSBGGGBCEEEEEHHHHHHHHHHHHSCHHHHHSSBCSSCBSE
T ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             8999888753223047889986087067789999851357679988411799999999999976999995699999998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Nqo1 FMN-binding domain-like
superfamily: Nqo1 FMN-binding domain-like
family: Nqo1 FMN-binding domain-like
domain: NADH-quinone oxidoreductase chain 1, Nqo1
species: Thermus thermophilus [TaxId: 274]