HHSEARCH alignment of GI: 254780858 and SCOP domain: d2fug13

Alignment
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=99.90  E-value=1.1e-24  Score=183.31  Aligned_cols=83  Identities=43%  Similarity=0.639  Sum_probs=76.3

Q ss_pred             EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf             47642678878726893589879999998615567871100489852456565321-00245633422011038734665
Q gi|254780858|r  240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGLKEMGSGLGTA  318 (425)
Q Consensus       240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~-~~ld~~~ld~~~l~~~Gs~LGsg  318 (425)
                      |+|||||+|+|||+||+|+|||++|||+++|||+..   ++||+|+||+|+++|+. ++..++|||||++++.|++||||
T Consensus         1 Kl~slsG~V~~PGvyEvp~G~tl~elI~~~~GG~~~---~~kav~~GG~s~~~l~~~~~~ld~~ld~e~l~~~G~~lGsg   77 (84)
T d2fug13           1 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLE---PIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTG   77 (84)
T ss_dssp             EEEEEESSBSSCEEEEEETTCBHHHHHTTTTCCBSS---CEEEEECSCTTSCCEECCHHHHTCBCSTTTTTTTTSCCSTT
T ss_pred             CEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCC---CEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCE
T ss_conf             979970773378479981898999999986013555---43799968887776667588828857766698749567732


Q ss_pred             EEEEECC
Q ss_conf             1799428
Q gi|254780858|r  319 AVIVMDR  325 (425)
Q Consensus       319 ~iiV~de  325 (425)
                      +||||||
T Consensus        78 ~iiV~dE   84 (84)
T d2fug13          78 GVILIPE   84 (84)
T ss_dssp             EEEEEET
T ss_pred             EEEEECC
T ss_conf             8999678


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Nqo1 middle domain-like
family: Nqo1 middle domain-like
domain: NADH-quinone oxidoreductase chain 1, Nqo1
species: Thermus thermophilus [TaxId: 274]